RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for URGCP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000049680

Ensembl transcript IDs: ENSMUST00000053427.11, ENSMUST00000093362.12, ENSMUST00000118076.8, ENSMUST00000120306.8, ENSMUST00000140922.2, ENSMUST00000170116.8

Found 590 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CGGCCAGACCTACCAGCAGATCACCAGGGCACCTCTTGGTCATCCTaGGAGACCCAGGGAGCCAGGCCAGTAGAGGAGTGCAGTGGGCCC +
Preference number: 1 (lower is better)
Translates to: RPDLPADHQGTSWSS*ETQGARPVEECSGP
Trigger: GGGCCCACTGCACTCCTCTACTGGCCTGGCTCCCTGGGTCTCCCAGGATGACCAAGAGGTGCCCTGGTGATCTGCTGGTAGGTCTGGCCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR CCA 90 bp ATCCGCACACGGCCAGACCTACCAGCAGATCACCAGGGCACCTCTTaGTCATCCTGGGAGACCCAGGGAGCCAGGCCAGTAGAGGAGTGC +
Preference number: 1 (lower is better)
Translates to: IRTRPDLPADHQGTS*SSWETQGARPVEEC
Trigger: GCACTCCTCTACTGGCCTGGCTCCCTGGGTCTCCCAGGATGACCAAGAGGTGCCCTGGTGATCTGCTGGTAGGTCTGGCCGTGTGCGGAT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR GCA 90 bp ACTGGCCTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCAGGTaGCGGCCACAGCCTTACTGTCACAGCCTTACTGTCGTTACAGCC +
Preference number: 1 (lower is better)
Translates to: TGLHSMSSRHQPTPR*RPQPYCHSLTVVTA
Trigger: GGCTGTAACGACAGTAAGGCTGTGACAGTAAGGCTGTGGCCGGCACCTGGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR CCA 90 bp CTTCTTAACACTGTGAAGAGGAGGCCCGTCACCCCTGGCTGTCACTaGCCTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCAGGTG +
Preference number: 1 (lower is better)
Translates to: LLNTVKRRPVTPGCH*PSLHEQQAPANSQV
Trigger: CACCTGGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAGTGACAGCCAGGGGTGACGGGCCTCCTCTTCACAGTGTTAAGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR TCA 90 bp AGCACTTCCTGGGCACGGGTCAGAGAGCGCGTCATACACCGTACATaGGCGCAGTGCCATGGCAGTGCCTCACACTTTGCTGCACATCAC +
Preference number: 1 (lower is better)
Translates to: STSWARVRERVIHRT*AQCHGSASHFAAHH
Trigger: GTGATGTGCAGCAAAGTGTGAGGCACTGCCATGGCACTGCGCTCATGTACGGTGTATGACGCGCTCTCTGACCCGTGCCCAGGAAGTGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR GCA 90 bp TCTTGGTCATCCTGGGAGACCCAGGGAGCCAGGCCAGTAGAGGAGTaGAGTGGGCCCTTGGTTCAAGAAAGGGTTCCAGATCAGAGAGCG +
Preference number: 1 (lower is better)
Translates to: SWSSWETQGARPVEE*SGPLVQERVPDQRA
Trigger: CGCTCTCTGATCTGGAACCCTTTCTTGAACCAAGGGCCCACTGCACTCCTCTACTGGCCTGGCTCCCTGGGTCTCCCAGGATGACCAAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR CCA 90 bp GTCATCCTGGGAGACCCAGGGAGCCAGGCCAGTAGAGGAGTGCAGTaGGCCCTTGGTTCAAGAAAGGGTTCCAGATCAGAGAGCGCACAA +
Preference number: 1 (lower is better)
Translates to: VILGDPGSQASRGVQ*ALGSRKGSRSESAQ
Trigger: TTGTGCGCTCTCTGATCTGGAACCCTTTCTTGAACCAAGGGCCCACTGCACTCCTCTACTGGCCTGGCTCCCTGGGTCTCCCAGGATGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR CCA 90 bp CCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTTaGGACAACCTGAAACACCCCTGTCTGCCAGCAGCTACAGTGACT +
Preference number: 1 (lower is better)
Translates to: PSRLVHRGPVWSLLP*DNLKHPCLPAATVT
Trigger: AGTCACTGTAGCTGCTGGCAGACAGGGGTGTTTCAGGTTGTCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR CCA 90 bp GGCAGTGCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGCTaGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTTGGGACAACC +
Preference number: 1 (lower is better)
Translates to: GSASHFAAHHQNLPG*STEDLCGVCFLGTT
Trigger: GGTTGTCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGCACTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR CCA 90 bp ACGGGTCAGAGAGCGCGTCATACACCGTACATGAGCGCAGTGCCATaGCAGTGCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGG +
Preference number: 1 (lower is better)
Translates to: TGQRARHTPYMSAVP*QCLTLCCTSPKPSR
Trigger: CCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGCACTGCCATGGCACTGCGCTCATGTACGGTGTATGACGCGCTCTCTGACCCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR TCA 90 bp CTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATGGTGTCTCTaGGCTAGTCTGAGATTGCTTCTTAACACTGTGAAGAGGAGGCCC +
Preference number: 1 (lower is better)
Translates to: LTTPPRASGYSQWCL*ASLRLLLNTVKRRP
Trigger: GGGCCTCCTCTTCACAGTGTTAAGAAGCAATCTCAGACTAGCTCAGAGACACCATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR GCA 90 bp GGGGAGGACTCTAGCATGTATAGCAGACCCTCTCACGTCCTGCTGTaGAGGTGTTGCAGGCTAGCATTACCCTCCAGCAACCACAAAATG +
Preference number: 1 (lower is better)
Translates to: GEDSSMYSRPSHVLL*RCCRLALPSSNHKM
Trigger: CATTTTGTGGTTGCTGGAGGGTAATGCTAGCCTGCAACACCTGCACAGCAGGACGTGAGAGGGTCTGCTATACATGCTAGAGTCCTCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR CCA 90 bp CTTCAGGCAGAGGCTGCTGTCCTAAGCATGAGGACAATGAAGGCGTaGAGAGGCAGAACCTGCACACTACTGTCATTTGAGTATACATTC +
Preference number: 1 (lower is better)
Translates to: LQAEAAVLSMRTMKA*RGRTCTLLSFEYTF
Trigger: GAATGTATACTCAAATGACAGTAGTGTGCAGGTTCTGCCTCTCCACGCCTTCATTGTCCTCATGCTTAGGACAGCAGCCTCTGCCTGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR CCA 90 bp TGTGGACAGACCTCATGTAGAAAGAACGTTCTATCTTCTTGGAGATaGGGGGTCTTGCTGTATACCCAGACTGACCCTAAACTTTTGGAT +
Preference number: 1 (lower is better)
Translates to: CGQTSCRKNVLSSWR*GVLLYTQTDPKLLD
Trigger: ATCCAAAAGTTTAGGGTCAGTCTGGGTATACAGCAAGACCCCCCATCTCCAAGAAGATAGAACGTTCTTTCTACATGAGGTCTGTCCACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR GCA 90 bp GCTGTCCTAAGCATGAGGACAATGAAGGCGTGGAGAGGCAGAACCTaGACACTACTGTCATTTGAGTATACATTCAACTCATTAATTCAA +
Preference number: 1 (lower is better)
Translates to: AVLSMRTMKAWRGRT*TLLSFEYTFNSLIQ
Trigger: TTGAATTAATGAGTTGAATGTATACTCAAATGACAGTAGTGTGCAGGTTCTGCCTCTCCACGCCTTCATTGTCCTCATGCTTAGGACAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR TCA 90 bp AGTCAGTACACAACTTTATGGGATTGGTTTCCTTCCAGTTTTAGGTaGGTTCCAGAGATCAAATTCAAGTTGTTATGCTTTGCTGCAAGT +
Preference number: 1 (lower is better)
Translates to: SQYTTLWDWFPSSFR*VPEIKFKLLCFAAS
Trigger: ACTTGCAGCAAAGCATAACAACTTGAATTTGATCTCTGGAACTCACCTAAAACTGGAAGGAAACCAATCCCATAAAGTTGTGTACTGACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR CAA 90 bp CATCCGCACACGGCCAGACCTACCAGCAGATCACCAGGGCACCTCTaGGTCATCCTGGGAGACCCAGGGAGCCAGGCCAGTAGAGGAGTG +
Preference number: 2 (lower is better)
Translates to: HPHTARPTSRSPGHL*VILGDPGSQASRGV
Trigger: CACTCCTCTACTGGCCTGGCTCCCTGGGTCTCCCAGGATGACCAAGAGGTGCCCTGGTGATCTGCTGGTAGGTCTGGCCGTGTGCGGATG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR-3UTR GCA 90 bp TGGGAGACCCAGGGAGCCAGGCCAGTAGAGGAGTGCAGTGGGCCCTTGGTTCAAACCCAGAGGGCCGATTaGCAGGAGCTTTGTCATGGG +
Preference number: 2 (lower is better)
Translates to: WETQGARPVEECSGPLVQTQRAD*QELCHG
Trigger: CCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGT...TTGAACCAAGGGCCCACTGCACTCCTCTACTGGCCTGGCTCCCTGGGTCTCCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR-3UTR CCA 90 bp CAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGGTGCTGCGGGAGGCCCGTCACCCCTaGCTGTCACTGGCCTTCACT +
Preference number: 2 (lower is better)
Translates to: QSRGRQETHVTMCREVLREARHP*LSLAFT
Trigger: AGTGAAGGCCAGTGACAGCCAGGGGTGACGGGCCTC...CCGCAGCACCTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR GCA 90 bp GCCAATGAAGGAGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGCAGCCAACTCCCAGGTaGCGGCCACAGCCTTACTGT +
Preference number: 2 (lower is better)
Translates to: ANEGAATQRADCQELCHGQPTPR*RPQPYC
Trigger: ACAGTAAGGCTGTGGCCGGCACCTGGGAGTTGGCTG...CCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCTCCTTCATTGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR CCA 90 bp CCAATGAAGGAGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGTGAGGCCCGTCACCCCTaGCTGTCACTGGCCTTCACT +
Preference number: 2 (lower is better)
Translates to: PMKEQLPRGPIARSFVMGEARHP*LSLAFT
Trigger: AGTGAAGGCCAGTGACAGCCAGGGGTGACGGGCCTC...ACCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCTCCTTCATTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR CAA 90 bp TGGGAGACCCAGGGAGCCAGGCCAGTAGAGGAGTGCAGTGGGCCCTaGGTTCAAGAAAGGGTTCCAGATCAGAGAGCGCACAAGTACCCT +
Preference number: 2 (lower is better)
Translates to: WETQGARPVEECSGP*VQERVPDQRAHKYP
Trigger: AGGGTACTTGTGCGCTCTCTGATCTGGAACCCTTTCTTGAACCAAGGGCCCACTGCACTCCTCTACTGGCCTGGCTCCCTGGGTCTCCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR-3UTR CCA 90 bp CATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCGAGGCCCGTCACCCCTaGCTGTCACTGGCCTTCACT +
Preference number: 2 (lower is better)
Translates to: HHQNLPGWSTEDLCGVCFEARHP*LSLAFT
Trigger: AGTGAAGGCCAGTGACAGCCAGGGGTGACGGGCCTC...GAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR CCA 90 bp GCAGTGCCATGGCAGTGCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGGAGGCCCGTCACCCCTaGCTGTCACTGGCCTTCACT +
Preference number: 2 (lower is better)
Translates to: AVPWQCLTLCCTSPKPSREARHP*LSLAFT
Trigger: AGTGAAGGCCAGTGACAGCCAGGGGTGACGGGCCTC...CCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGCACTGCCATGGCACTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR CAA 90 bp ACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTaGGGACAACCTGAAACACCCCTGTCTGCCAGCAGCTACAGTGAC +
Preference number: 2 (lower is better)
Translates to: TFQAGPQRTCVESAS*GQPETPLSASSYSD
Trigger: GTCACTGTAGCTGCTGGCAGACAGGGGTGTTTCAGGTTGTCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR TCA 90 bp GAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATGGCTGGCCTTCACTCCATaGGCAGCAGGCACCAGCCAA +
Preference number: 2 (lower is better)
Translates to: EINLLLTTPPRASGYSQWLAFTP*AAGTSQ
Trigger: TTGGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAG...CCATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR TCA 90 bp GCAGTGCCATGGCAGTGCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGCCTTCACTCCATaGGCAGCAGGCACCAGCCAA +
Preference number: 2 (lower is better)
Translates to: AVPWQCLTLCCTSPKPSRLAFTP*AAGTSQ
Trigger: TTGGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAG...CCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGCACTGCCATGGCACTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR TCA 90 bp CAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGGTGCTGCGGTGCTTCTTAACACTGTaGAGAGGAGGCCCGTCACCC +
Preference number: 2 (lower is better)
Translates to: QSRGRQETHVTMCREVLRCFLTL*RGGPSP
Trigger: GGGTGACGGGCCTCCTCTTCACAGTGTTAAGAAGCA...CCGCAGCACCTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR TCA 90 bp AGGGTAACTGATGAGCACTTCCTGGGCACGGGTCAGAGAGCGCGTCATACACCGTGCCAGCAGCTACAGTaGCTAAGGGAGCTGTTCCCT +
Preference number: 2 (lower is better)
Translates to: RVTDEHFLGTGQRARHTPCQQLQ*LRELFP
Trigger: AGGGAACAGCTCCCTTAGTCACTGTAGCTGCTGGCA...CGGTGTATGACGCGCTCTCTGACCCGTGCCCAGGAAGTGCTCATCAGTTACCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR GCA 90 bp CCTCTTCAGGCAGAGGCTGCTGTCCTAAGCATGAGGACAATGAAGGCGTGGAGACAGCCAACTCCCAGGTaGCGGCCACAGCCTTACTGT +
Preference number: 2 (lower is better)
Translates to: PLQAEAAVLSMRTMKAWRQPTPR*RPQPYC
Trigger: ACAGTAAGGCTGTGGCCGGCACCTGGGAGTTGGCTG...TCTCCACGCCTTCATTGTCCTCATGCTTAGGACAGCAGCCTCTGCCTGAAGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR-3UTR GCA 90 bp AAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTTGGGACAGCCAACTCCCAGGTaGCGGCCACAGCCTTACTGT +
Preference number: 2 (lower is better)
Translates to: KTFQAGPQRTCVESASLGQPTPR*RPQPYC
Trigger: ACAGTAAGGCTGTGGCCGGCACCTGGGAGTTGGCTG...TCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR GCA 90 bp CAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGGTGCTGCGGGCAGTGCCATGGCAGTaGCTCACACTTTGCTGCACA +
Preference number: 2 (lower is better)
Translates to: QSRGRQETHVTMCREVLRAVPWQ*LTLCCT
Trigger: TGTGCAGCAAAGTGTGAGGCACTGCCATGGCACTGC...CCGCAGCACCTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR GCA 90 bp TGGGAGACCCAGGGAGCCAGGCCAGTAGAGGAGTGCAGTGGGCCCTTGGTTCAACAGTGGCTCCATTGCTaGACTTTTCAGAATGCTGGG +
Preference number: 2 (lower is better)
Translates to: WETQGARPVEECSGPLVQQWLHC*TFQNAG
Trigger: CCCAGCATTCTGAAAAGTGCAGCAATGGAGCCACTG...TTGAACCAAGGGCCCACTGCACTCCTCTACTGGCCTGGCTCCCTGGGTCTCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR-3UTR CCA 90 bp GCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCACCCCTGGCTGTCACTaGCCTTCACTCCATGAGCAG +
Preference number: 2 (lower is better)
Translates to: AAHHQNLPGWSTEDLCGVTPGCH*PSLHEQ
Trigger: CTGCTCATGGAGTGAAGGCCAGTGACAGCCAGGGGT...GACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR CCA 90 bp CAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGGTGCTGCGGCACAGAGGACCTGTGTaGAGTCTGCTTCCTTGGGAC +
Preference number: 2 (lower is better)
Translates to: QSRGRQETHVTMCREVLRHRGPV*SLLPWD
Trigger: GTCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTG...CCGCAGCACCTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR CCA 90 bp CCTCTTCAGGCAGAGGCTGCTGTCCTAAGCATGAGGACAATGAAGGCGTGGAGACTGATGAGCACTTCCTaGGCACGGGTCAGAGAGCGC +
Preference number: 2 (lower is better)
Translates to: PLQAEAAVLSMRTMKAWRLMSTS*ARVRER
Trigger: GCGCTCTCTGACCCGTGCCCAGGAAGTGCTCATCAG...TCTCCACGCCTTCATTGTCCTCATGCTTAGGACAGCAGCCTCTGCCTGAAGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR-3UTR TCA 90 bp CAGTGCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGACTGGCCTTCACTCCATaGGCAGCAGGCACCAGCCAA +
Preference number: 2 (lower is better)
Translates to: QCLTLCCTSPKPSRLVHRLAFTP*AAGTSQ
Trigger: TTGGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAG...TCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGCACTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR TCA 90 bp AAGAAAGGGTTCCAGATCAGAGAGCGCACAAGTACCCTGGAACCAAGGGCACCTCTGGCCTTCACTCCATaGGCAGCAGGCACCAGCCAA +
Preference number: 2 (lower is better)
Translates to: KKGFQIRERTSTLEPRAPLAFTP*AAGTSQ
Trigger: TTGGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAG...AGGTGCCCTTGGTTCCAGGGTACTTGTGCGCTCTCTGATCTGGAACCCTTTCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR-3UTR TCA 90 bp GCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCTTAACACTGTaGAGAGGAGGCCCGTCACCC +
Preference number: 2 (lower is better)
Translates to: AAHHQNLPGWSTEDLCGVCFLTL*RGGPSP
Trigger: GGGTGACGGGCCTCCTCTTCACAGTGTTAAGAAGCA...GACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR CCA 90 bp GATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATGGTGACCCCTGGCTGTCACTaGCCTTCACTCCATGAGCAG +
Preference number: 2 (lower is better)
Translates to: DQLTAYHPTPGLGLFSMVTPGCH*PSLHEQ
Trigger: CTGCTCATGGAGTGAAGGCCAGTGACAGCCAGGGGT...CACCATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR CCA 90 bp AGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGTAAGGAACAGAACCCCTGGCTGTCACTaGCCTTCACTCCATGAGCAG +
Preference number: 2 (lower is better)
Translates to: SSYPEGRLPGALSWVRNRTPGCH*PSLHEQ
Trigger: CTGCTCATGGAGTGAAGGCCAGTGACAGCCAGGGGT...TCTGTTCCTTACCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR CCA 90 bp CATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCACCCCTGGCTGTCACTaGCCTTCACTCCATGAGCAG +
Preference number: 2 (lower is better)
Translates to: HHQNLPGWSTEDLCGVCFTPGCH*PSLHEQ
Trigger: CTGCTCATGGAGTGAAGGCCAGTGACAGCCAGGGGT...GAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR TCA 90 bp TTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTGCTTCTTAACACTGTaGAGAGGAGGCCCGTCACCC +
Preference number: 2 (lower is better)
Translates to: LLHITKTFQAGPQRTCVECFLTL*RGGPSP
Trigger: GGGTGACGGGCCTCCTCTTCACAGTGTTAAGAAGCA...CTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR TCA 90 bp AAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTTGGGATGCTTCTTAACACTGTaGAGAGGAGGCCCGTCACCC +
Preference number: 2 (lower is better)
Translates to: KTFQAGPQRTCVESASLGCFLTL*RGGPSP
Trigger: GGGTGACGGGCCTCCTCTTCACAGTGTTAAGAAGCA...TCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR TCA 90 bp AGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGTAAGGAACAGATGCTTCTTAACACTGTaGAGAGGAGGCCCGTCACCC +
Preference number: 2 (lower is better)
Translates to: SSYPEGRLPGALSWVRNRCFLTL*RGGPSP
Trigger: GGGTGACGGGCCTCCTCTTCACAGTGTTAAGAAGCA...TCTGTTCCTTACCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR TCA 90 bp CTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGTGCCAGCAGCTACAGTaGCTAAGGGAGCTGTTCCCT +
Preference number: 2 (lower is better)
Translates to: LCCTSPKPSRLVHRGPVWCQQLQ*LRELFP
Trigger: AGGGAACAGCTCCCTTAGTCACTGTAGCTGCTGGCA...CCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR TCA 90 bp AAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTTGGGATGCCAGCAGCTACAGTaGCTAAGGGAGCTGTTCCCT +
Preference number: 2 (lower is better)
Translates to: KTFQAGPQRTCVESASLGCQQLQ*LRELFP
Trigger: AGGGAACAGCTCCCTTAGTCACTGTAGCTGCTGGCA...TCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR CCA 90 bp GGCAGATCAGAGATCCTGCAAAGTTTCAGGATTGCTTTTCTCATCCGCACACGGGAGGCCCGTCACCCCTaGCTGTCACTGGCCTTCACT +
Preference number: 2 (lower is better)
Translates to: GRSEILQSFRIAFLIRTREARHP*LSLAFT
Trigger: AGTGAAGGCCAGTGACAGCCAGGGGTGACGGGCCTC...CCGTGTGCGGATGAGAAAAGCAATCCTGAAACTTTGCAGGATCTCTGATCTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR-3UTR TCA 90 bp CCTGGAACCAAGGGCACCTTTGCTGAATCTAGTAAAAGGACAAGACACAGGAGACTGGCCTTCACTCCATaGGCAGCAGGCACCAGCCAA +
Preference number: 2 (lower is better)
Translates to: PGTKGTFAESSKRTRHRRLAFTP*AAGTSQ
Trigger: TTGGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAG...TCTCCTGTGTCTTGTCCTTTTACTAGATTCAGCAAAGGTGCCCTTGGTTCCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR-3UTR CCA 90 bp CAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGGTGCTGCGGCCAGGAGCTTTGTCATaGGTAAGGAACAGAGATCAA +
Preference number: 2 (lower is better)
Translates to: QSRGRQETHVTMCREVLRPGALS*VRNRDQ
Trigger: TTGATCTCTGTTCCTTACCCATGACAAAGCTCCTGG...CCGCAGCACCTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR CCA 90 bp TTTGCTGAATCTAGTAAAAGGACAAGACACAGGAGAGGTTCTCAGGCCATGGCCCTGATGAGCACTTCCTaGGCACGGGTCAGAGAGCGC +
Preference number: 2 (lower is better)
Translates to: FAESSKRTRHRRGSQAMALMSTS*ARVRER
Trigger: GCGCTCTCTGACCCGTGCCCAGGAAGTGCTCATCAG...GGCCATGGCCTGAGAACCTCTCCTGTGTCTTGTCCTTTTACTAGATTCAGCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR-3UTR CCA 90 bp ATCCTCCATCTCTCAAGTCCTGATACCACAGCTATGCACCACCATTCCCAGTATGGACCCAGAGCTGTATaGTGCTTAGGCCCTGCCCTC +
Preference number: 2 (lower is better)
Translates to: ILHLSSPDTTAMHHHSQYGPRAV*CLGPAL
Trigger: GAGGGCAGGGCCTAAGCACCATACAGCTCTGGGTCC...ATACTGGGAATGGTGGTGCATAGCTGTGGTATCAGGACTTGAGAGATGGAGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR-3UTR TCA 90 bp GCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCGTCTCTGAGCTAGTCTaGGATTGCTTCTTAACACTG +
Preference number: 2 (lower is better)
Translates to: AAHHQNLPGWSTEDLCGVVSELV*DCFLTL
Trigger: CAGTGTTAAGAAGCAATCTCAGACTAGCTCAGAGAC...GACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR CCA 90 bp GCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCCCAGGAGCTTTGTCATaGGTAAGGAACAGAGATCAA +
Preference number: 2 (lower is better)
Translates to: AAHHQNLPGWSTEDLCGVPGALS*VRNRDQ
Trigger: TTGATCTCTGTTCCTTACCCATGACAAAGCTCCTGG...GACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR TCA 90 bp CATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCGTCTCTGAGCTAGTCTaGGATTGCTTCTTAACACTG +
Preference number: 2 (lower is better)
Translates to: HHQNLPGWSTEDLCGVCFVSELV*DCFLTL
Trigger: CAGTGTTAAGAAGCAATCTCAGACTAGCTCAGAGAC...GAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR TCA 90 bp CTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGGTCTCTGAGCTAGTCTaGGATTGCTTCTTAACACTG +
Preference number: 2 (lower is better)
Translates to: LCCTSPKPSRLVHRGPVWVSELV*DCFLTL
Trigger: CAGTGTTAAGAAGCAATCTCAGACTAGCTCAGAGAC...CCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR GCA 90 bp AACTCACAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGGTGTGCCTCACACTTTGCTaGACATCACCAAAACCTTCC +
Preference number: 2 (lower is better)
Translates to: NSQSRGRQETHVTMCREVCLTLC*TSPKPS
Trigger: GGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGCA...CACCTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTGTGAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR GCA 90 bp GGCAGATCAGAGATCCTGCAAAGTTTCAGGATTGCTTTTCTCATCCGCACACGGATGGTGCTTAGGCCCTaGCCTCAAGCAACTCACAGT +
Preference number: 2 (lower is better)
Translates to: GRSEILQSFRIAFLIRTRMVLRP*PQATHS
Trigger: ACTGTGAGTTGCTTGAGGGCAGGGCCTAAGCACCAT...CCGTGTGCGGATGAGAAAAGCAATCCTGAAACTTTGCAGGATCTCTGATCTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR-3UTR GCA 90 bp CTAGTAAAAGGACAAGACACAGGAGAGGTTCTCAGGCCATGGCCTGACTTCTCTATGGTGCTTAGGCCCTaGCCTCAAGCAACTCACAGT +
Preference number: 2 (lower is better)
Translates to: LVKGQDTGEVLRPWPDFSMVLRP*PQATHS
Trigger: ACTGTGAGTTGCTTGAGGGCAGGGCCTAAGCACCAT...AGAGAAGTCAGGCCATGGCCTGAGAACCTCTCCTGTGTCTTGTCCTTTTACTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR-3UTR GCA 90 bp ATCCTCCATCTCTCAAGTCCTGATACCACAGCTATGCACCACCATTCCCAGTATTCTCACGTCCTGCTGTaGAGGTGTTGCAGGCTAGCA +
Preference number: 2 (lower is better)
Translates to: ILHLSSPDTTAMHHHSQYSHVLL*RCCRLA
Trigger: TGCTAGCCTGCAACACCTGCACAGCAGGACGTGAGA...ATACTGGGAATGGTGGTGCATAGCTGTGGTATCAGGACTTGAGAGATGGAGGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR-3UTR GCA 90 bp TTTGCTGAATCTAGTAAAAGGACAAGACACAGGAGAGGTTCTCAGGCCATGGCCTCTCACGTCCTGCTGTaGAGGTGTTGCAGGCTAGCA +
Preference number: 2 (lower is better)
Translates to: FAESSKRTRHRRGSQAMASHVLL*RCCRLA
Trigger: TGCTAGCCTGCAACACCTGCACAGCAGGACGTGAGA...GGCCATGGCCTGAGAACCTCTCCTGTGTCTTGTCCTTTTACTAGATTCAGCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR CAA 90 bp TTCCAGATCAGAGAGCGCACAAGTACCCTGGAACCAAGGGCACCTTaGCTGAATCTAGTAAAAGGACAAGACACAGGAGAGGTTCTCAGG +
Preference number: 2 (lower is better)
Translates to: FQIRERTSTLEPRAP*LNLVKGQDTGEVLR
Trigger: CCTGAGAACCTCTCCTGTGTCTTGTCCTTTTACTAGATTCAGCAAAGGTGCCCTTGGTTCCAGGGTACTTGTGCGCTCTCTGATCTGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR-3UTR CCA 90 bp CACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTCCAGGAGCTTTGTCATaGGTAAGGAACAGAGATCAA +
Preference number: 2 (lower is better)
Translates to: HFAAHHQNLPGWSTEDLCPGALS*VRNRDQ
Trigger: TTGATCTCTGTTCCTTACCCATGACAAAGCTCCTGG...ACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR CCA 90 bp GGCAGATCAGAGATCCTGCAAAGTTTCAGGATTGCTTTTCTCATCCGCACACGGAGGTGTAGATGTAGGTaGAGCAGGGCTCTGAAAGTG +
Preference number: 2 (lower is better)
Translates to: GRSEILQSFRIAFLIRTRRCRCR*SRALKV
Trigger: CACTTTCAGAGCCCTGCTCCACCTACATCTACACCT...CCGTGTGCGGATGAGAAAAGCAATCCTGAAACTTTGCAGGATCTCTGATCTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR-3UTR TCA 90 bp CTAGTAAAAGGACAAGACACAGGAGAGGTTCTCAGGCCATGGCCTGACTTCTCTCTGCTGAAGTCACCATaGAGGTACCATTTCCACTGT +
Preference number: 2 (lower is better)
Translates to: LVKGQDTGEVLRPWPDFSLLKSP*RYHFHC
Trigger: ACAGTGGAAATGGTACCTTCATGGTGACTTCAGCAG...AGAGAAGTCAGGCCATGGCCTGAGAACCTCTCCTGTGTCTTGTCCTTTTACTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR-3UTR GCA 90 bp GGCAGATCAGAGATCCTGCAAAGTTTCAGGATTGCTTTTCTCATCCGCACACGGAAACAGTGGCTCCATTaGTGCACTTTTCAGAATGCT +
Preference number: 2 (lower is better)
Translates to: GRSEILQSFRIAFLIRTRKQWLH*CTFQNA
Trigger: AGCATTCTGAAAAGTGCAGCAATGGAGCCACTGTTT...CCGTGTGCGGATGAGAAAAGCAATCCTGAAACTTTGCAGGATCTCTGATCTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR-3UTR CCA 90 bp GTCCCTGACCAAGTAACTGTCTCAAACAGTGGCTCCATTGCTGCACTTTTCAGACCAGGAGCTTTGTCATaGGTAAGGAACAGAGATCAA +
Preference number: 2 (lower is better)
Translates to: VPDQVTVSNSGSIAALFRPGALS*VRNRDQ
Trigger: TTGATCTCTGTTCCTTACCCATGACAAAGCTCCTGG...TCTGAAAAGTGCAGCAATGGAGCCACTGTTTGAGACAGTTACTTGGTCAGGGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR-3UTR CCA 90 bp CTAGTAAAAGGACAAGACACAGGAGAGGTTCTCAGGCCATGGCCTGACTTCTCTAACTGTCTCAAACAGTaGCTCCATTGCTGCACTTTT +
Preference number: 2 (lower is better)
Translates to: LVKGQDTGEVLRPWPDFSNCLKQ*LHCCTF
Trigger: AAAAGTGCAGCAATGGAGCCACTGTTTGAGACAGTT...AGAGAAGTCAGGCCATGGCCTGAGAACCTCTCCTGTGTCTTGTCCTTTTACTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR-3UTR GCA 90 bp GAATCAGCAAGTTATTTTAACATTCTAGGCAGATCAGAGATCCTGCAAAGTTTCCCCAGAGCTGTATGGTaGTTAGGCCCTGCCCTCAAG +
Preference number: 2 (lower is better)
Translates to: ESASYFNILGRSEILQSFPRAVW*LGPALK
Trigger: CTTGAGGGCAGGGCCTAAGCACCATACAGCTCTGGG...GAAACTTTGCAGGATCTCTGATCTGCCTAGAATGTTAAAATAACTTGCTGATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR-3UTR CCA 90 bp GAATCAGCAAGTTATTTTAACATTCTAGGCAGATCAGAGATCCTGCAAAGTTTCACCCCTGGCTGTCACTaGCCTTCACTCCATGAGCAG +
Preference number: 2 (lower is better)
Translates to: ESASYFNILGRSEILQSFTPGCH*PSLHEQ
Trigger: CTGCTCATGGAGTGAAGGCCAGTGACAGCCAGGGGT...GAAACTTTGCAGGATCTCTGATCTGCCTAGAATGTTAAAATAACTTGCTGATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR-3UTR CCA 90 bp ATCCTCCATCTCTCAAGTCCTGATACCACAGCTATGCACCACCATTCCCAGTATAACTGTCTCAAACAGTaGCTCCATTGCTGCACTTTT +
Preference number: 2 (lower is better)
Translates to: ILHLSSPDTTAMHHHSQYNCLKQ*LHCCTF
Trigger: AAAAGTGCAGCAATGGAGCCACTGTTTGAGACAGTT...ATACTGGGAATGGTGGTGCATAGCTGTGGTATCAGGACTTGAGAGATGGAGGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR-3UTR GCA 90 bp GAATCAGCAAGTTATTTTAACATTCTAGGCAGATCAGAGATCCTGCAAAGTTTCCAGTGGCTCCATTGCTaGACTTTTCAGAATGCTGGG +
Preference number: 2 (lower is better)
Translates to: ESASYFNILGRSEILQSFQWLHC*TFQNAG
Trigger: CCCAGCATTCTGAAAAGTGCAGCAATGGAGCCACTG...GAAACTTTGCAGGATCTCTGATCTGCCTAGAATGTTAAAATAACTTGCTGATTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR-3UTR CCA 90 bp GAATCAGCAAGTTATTTTAACATTCTAGGCAGATCAGAGATCCTGCAAAGTTTCCCAGGAGCTTTGTCATaGGTAAGGAACAGAGATCAA +
Preference number: 2 (lower is better)
Translates to: ESASYFNILGRSEILQSFPGALS*VRNRDQ
Trigger: TTGATCTCTGTTCCTTACCCATGACAAAGCTCCTGG...GAAACTTTGCAGGATCTCTGATCTGCCTAGAATGTTAAAATAACTTGCTGATTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR TCA 72 bp GCCCGTCACCCCTGGCTGTCACTGGCCTTCACTCCATaGGCAGCAGGCACCAGCCAACTCCCAGGTGCCGGC +
Preference number: 3 (lower is better)
Translates to: ARHPWLSLAFTP*AAGTSQLPGAG
Trigger: GCCGGCACCTGGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAGTGACAGCCAGGGGTGACGGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR CCA 72 bp CGGCCAGACCTACCAGCAGATCACCAGGGCACCTCTTaGTCATCCTGGGAGACCCAGGGAGCCAGGCCAGTA +
Preference number: 3 (lower is better)
Translates to: RPDLPADHQGTS*SSWETQGARPV
Trigger: TACTGGCCTGGCTCCCTGGGTCTCCCAGGATGACCAAGAGGTGCCCTGGTGATCTGCTGGTAGGTCTGGCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR CCA 72 bp CTACCAGCAGATCACCAGGGCACCTCTTGGTCATCCTaGGAGACCCAGGGAGCCAGGCCAGTAGAGGAGTGC +
Preference number: 3 (lower is better)
Translates to: LPADHQGTSWSS*ETQGARPVEEC
Trigger: GCACTCCTCTACTGGCCTGGCTCCCTGGGTCTCCCAGGATGACCAAGAGGTGCCCTGGTGATCTGCTGGTAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR GCA 72 bp CACTCCATGAGCAGCAGGCACCAGCCAACTCCCAGGTaGCGGCCACAGCCTTACTGTCACAGCCTTACTGTC +
Preference number: 3 (lower is better)
Translates to: HSMSSRHQPTPR*RPQPYCHSLTV
Trigger: GACAGTAAGGCTGTGACAGTAAGGCTGTGGCCGGCACCTGGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR GCA 72 bp TCCTGGGAGACCCAGGGAGCCAGGCCAGTAGAGGAGTaGAGTGGGCCCTTGGTTCAAGAAAGGGTTCCAGAT +
Preference number: 3 (lower is better)
Translates to: SWETQGARPVEE*SGPLVQERVPD
Trigger: ATCTGGAACCCTTTCTTGAACCAAGGGCCCACTGCACTCCTCTACTGGCCTGGCTCCCTGGGTCTCCCAGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR CCA 72 bp GGAGACCCAGGGAGCCAGGCCAGTAGAGGAGTGCAGTaGGCCCTTGGTTCAAGAAAGGGTTCCAGATCAGAG +
Preference number: 3 (lower is better)
Translates to: GDPGSQASRGVQ*ALGSRKGSRSE
Trigger: CTCTGATCTGGAACCCTTTCTTGAACCAAGGGCCCACTGCACTCCTCTACTGGCCTGGCTCCCTGGGTCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR-3UTR CAA 90 bp CAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGGTGCTGCGGTACCCAGAGGGCCGATaGCCAGGAGCTTTGTCATGG +
Preference number: 3 (lower is better)
Translates to: QSRGRQETHVTMCREVLRYPEGR*PGALSW
Trigger: CCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTA...CCGCAGCACCTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR CAA 90 bp AGGGTAACTGATGAGCACTTCCTGGGCACGGGTCAGAGAGCGCGTCATACACCGGTGGAGTCTGCTTCCTaGGGACAACCTGAAACACCC +
Preference number: 3 (lower is better)
Translates to: RVTDEHFLGTGQRARHTPVESAS*GQPETP
Trigger: GGGTGTTTCAGGTTGTCCCAAGGAAGCAGACTCCAC...CGGTGTATGACGCGCTCTCTGACCCGTGCCCAGGAAGTGCTCATCAGTTACCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR CCA 72 bp CTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTTaGGACAACCTGAAACACCCCTGTCTGCCAGCAGCT +
Preference number: 3 (lower is better)
Translates to: LVHRGPVWSLLP*DNLKHPCLPAA
Trigger: AGCTGCTGGCAGACAGGGGTGTTTCAGGTTGTCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTGGACCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR CAA 90 bp CTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGTACCCAGAGGGCCGATaGCCAGGAGCTTTGTCATGG +
Preference number: 3 (lower is better)
Translates to: LCCTSPKPSRLVHRGPVWYPEGR*PGALSW
Trigger: CCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTA...CCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR GCA 72 bp CAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTaGCGTGAGGTGCTGCGGAAGGATGACAGTGCTGGA +
Preference number: 3 (lower is better)
Translates to: QSRGRQETHVTM*REVLRKDDSAG
Trigger: TCCAGCACTGTCATCCTTCCGCAGCACCTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR CCA 72 bp CCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTaGAGTCTGCTTCCTTGGGACAACCTGAAACACCCC +
Preference number: 3 (lower is better)
Translates to: PKPSRLVHRGPV*SLLPWDNLKHP
Trigger: GGGGTGTTTCAGGTTGTCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR TCA 72 bp GCAACTCACAGTCTAGGGGCAGACAGGAAACACACGTaGCAATGTGCCGTGAGGTGCTGCGGAAGGATGACA +
Preference number: 3 (lower is better)
Translates to: ATHSLGADRKHT*QCAVRCCGRMT
Trigger: TGTCATCCTTCCGCAGCACCTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTGTGAGTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR CCA 72 bp AGAGCGCGTCATACACCGTACATGAGCGCAGTGCCATaGCAGTGCCTCACACTTTGCTGCACATCACCAAAA +
Preference number: 3 (lower is better)
Translates to: RARHTPYMSAVP*QCLTLCCTSPK
Trigger: TTTTGGTGATGTGCAGCAAAGTGTGAGGCACTGCCATGGCACTGCGCTCATGTACGGTGTATGACGCGCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR CAA 90 bp GGCAGATCAGAGATCCTGCAAAGTTTCAGGATTGCTTTTCTCATCCGCACACGGCCTGCTGTGCAGGTGTaGCAGGCTAGCATTACCCTC +
Preference number: 3 (lower is better)
Translates to: GRSEILQSFRIAFLIRTRPAVQV*QASITL
Trigger: GAGGGTAATGCTAGCCTGCAACACCTGCACAGCAGG...CCGTGTGCGGATGAGAAAAGCAATCCTGAAACTTTGCAGGATCTCTGATCTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR GCA 72 bp AGCTTTGTCATGGGTAAGGAACAGAGATCAACTTACTaGTTACCACCCCACCCCGGGCCTCGGGTTATTCTC +
Preference number: 3 (lower is better)
Translates to: SFVMGKEQRSTY*LPPHPGPRVIL
Trigger: GAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTCTGTTCCTTACCCATGACAAAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR CAA 90 bp AGCAACTCACAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGCGATTGCCAGGAGCTTaGTCATGGGTAAGGAACAGA +
Preference number: 3 (lower is better)
Translates to: SNSQSRGRQETHVTMCRERLPGA*SWVRNR
Trigger: TCTGTTCCTTACCCATGACAAAGCTCCTGGCAATCG...CTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTGTGAGTTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR-3UTR CAA 90 bp CCTGGAACCAAGGGCACCTTTGCTGAATCTAGTAAAAGGACAAGACACAGGAGATACCCAGAGGGCCGATaGCCAGGAGCTTTGTCATGG +
Preference number: 3 (lower is better)
Translates to: PGTKGTFAESSKRTRHRRYPEGR*PGALSW
Trigger: CCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTA...TCTCCTGTGTCTTGTCCTTTTACTAGATTCAGCAAAGGTGCCCTTGGTTCCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR TCA 72 bp CCACCCCGGGCCTCGGGTTATTCTCAATGGTGTCTCTaGGCTAGTCTGAGATTGCTTCTTAACACTGTGAAG +
Preference number: 3 (lower is better)
Translates to: PPRASGYSQWCL*ASLRLLLNTVK
Trigger: CTTCACAGTGTTAAGAAGCAATCTCAGACTAGCTCAGAGACACCATTGAGAATAACCCGAGGCCCGGGGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR CCA 72 bp AGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATaGGTAAGGAACAGAGATCAACTTACTGCTTACCAC +
Preference number: 3 (lower is better)
Translates to: SYPEGRLPGALS*VRNRDQLTAYH
Trigger: GTGGTAAGCAGTAAGTTGATCTCTGTTCCTTACCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR CCA 72 bp GTTTTATTATTAGCAGGTGTGCTTACAGTGTGTACATaGGGGGCGGTGACGTGGCACGTATGGAGTCAGTAC +
Preference number: 3 (lower is better)
Translates to: VLLLAGVLTVCT*GAVTWHVWSQY
Trigger: GTACTGACTCCATACGTGCCACGTCACCGCCCCCCATGTACACACTGTAAGCACACCTGCTAATAATAAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR-3UTR CAA 90 bp ATCCTCCATCTCTCAAGTCCTGATACCACAGCTATGCACCACCATTCCCAGTATCGATTGCCAGGAGCTTaGTCATGGGTAAGGAACAGA +
Preference number: 3 (lower is better)
Translates to: ILHLSSPDTTAMHHHSQYRLPGA*SWVRNR
Trigger: TCTGTTCCTTACCCATGACAAAGCTCCTGGCAATCG...ATACTGGGAATGGTGGTGCATAGCTGTGGTATCAGGACTTGAGAGATGGAGGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR-3UTR CAA 90 bp CTAGTAAAAGGACAAGACACAGGAGAGGTTCTCAGGCCATGGCCTGACTTCTCTCAAACAGTGGCTCCATaGCTGCACTTTTCAGAATGC +
Preference number: 3 (lower is better)
Translates to: LVKGQDTGEVLRPWPDFSQTVAP*LHFSEC
Trigger: GCATTCTGAAAAGTGCAGCAATGGAGCCACTGTTTG...AGAGAAGTCAGGCCATGGCCTGAGAACCTCTCCTGTGTCTTGTCCTTTTACTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR TCA 72 bp TTATGTAGCTCTGGCTATCCTAGACCTGCTTGGCTTTaGACATCCAGAGACACCTGTCTCTGCCTCCTTAGT +
Preference number: 3 (lower is better)
Translates to: LCSSGYPRPAWL*TSRDTCLCLLS
Trigger: ACTAAGGAGGCAGAGACAGGTGTCTCTGGATGTTCAAAGCCAAGCAGGTCTAGGATAGCCAGAGCTACATAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR GCA 72 bp AGCATGAGGACAATGAAGGCGTGGAGAGGCAGAACCTaGACACTACTGTCATTTGAGTATACATTCAACTCA +
Preference number: 3 (lower is better)
Translates to: SMRTMKAWRGRT*TLLSFEYTFNS
Trigger: TGAGTTGAATGTATACTCAAATGACAGTAGTGTGCAGGTTCTGCCTCTCCACGCCTTCATTGTCCTCATGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR CCA 72 bp ACCTCATGTAGAAAGAACGTTCTATCTTCTTGGAGATaGGGGGTCTTGCTGTATACCCAGACTGACCCTAAA +
Preference number: 3 (lower is better)
Translates to: TSCRKNVLSSWR*GVLLYTQTDPK
Trigger: TTTAGGGTCAGTCTGGGTATACAGCAAGACCCCCCATCTCCAAGAAGATAGAACGTTCTTTCTACATGAGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR-3UTR CAA 90 bp GTCCCTGACCAAGTAACTGTCTCAAACAGTGGCTCCATTGCTGCACTTTTCAGAGCACACTACTGTCATTaGAGTATACATTCAACTCAT +
Preference number: 3 (lower is better)
Translates to: VPDQVTVSNSGSIAALFRAHYCH*SIHSTH
Trigger: ATGAGTTGAATGTATACTCAAATGACAGTAGTGTGC...TCTGAAAAGTGCAGCAATGGAGCCACTGTTTGAGACAGTTACTTGGTCAGGGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CCCGTCACCCCTGGCTGTCACTGGCCTTCACTCCATGAGCAGCAGGCACCAGCCCAGAAGCAGTCCCACTaGCGGCGGGCCGGGCTGAGG +
Preference number: 4 (lower is better)
Translates to: PVTPGCHWPSLHEQQAPAQKQSH*RRAGLR
Trigger: CCTCAGCCCGGCCCGCCGCCAGTGGGACTGCTTCTG...GGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAGTGACAGCCAGGGGTGACGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp CTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCAGGTGCCGGCCACAGCCTCTCAGCTCGGCCCGGTaGTTCTCTGGGGGCTCCGGG +
Preference number: 4 (lower is better)
Translates to: LHSMSSRHQPTPRCRPQPLSSAR*FSGGSG
Trigger: CCCGGAGCCCCCAGAGAAGCACCGGGCCGAGCTGAG...AGGCTGTGGCCGGCACCTGGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CCCGTCACCCCTGGCTGTCACTGGCCTTCACTCCATGAGCAGCAGGCACCAGCCCACAGCGGCCATGGGTaGCGCTCCATGCCACAAGGC +
Preference number: 4 (lower is better)
Translates to: PVTPGCHWPSLHEQQAPAHSGHG*RSMPQG
Trigger: GCCTTGTGGCATGGAGCGCCACCCATGGCCGCTGTG...GGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAGTGACAGCCAGGGGTGACGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CCCCTGGCTGTCACTGGCCTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCAGGCTCCGGAGGGGCTaGAACCACCACGTCCGCACA +
Preference number: 4 (lower is better)
Translates to: PLAVTGLHSMSSRHQPTPRLRRG*NHHVRT
Trigger: TGTGCGGACGTGGTGGTTCCAGCCCCTCCGGAGCCT...GGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAGTGACAGCCAGGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GTCACTGGCCTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCAGGTGCCGGCCTGAGGTGGGCTCCTaGCCATTCTGCTGCACCCGG +
Preference number: 4 (lower is better)
Translates to: VTGLHSMSSRHQPTPRCRPEVGS*PFCCTR
Trigger: CCGGGTGCAGCAGAATGGCCAGGAGCCCACCTCAGG...CCGGCACCTGGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAGTGAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CCCCTGGCTGTCACTGGCCTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCCTCTGGAGGCTGTCTTaGCCGTGGCTGGCCAAGCCG +
Preference number: 4 (lower is better)
Translates to: PLAVTGLHSMSSRHQPTPLWRLS*PWLAKP
Trigger: CGGCTTGGCCAGCCACGGCCAAGACAGCCTCCAGAG...GGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAGTGACAGCCAGGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCAGGTGCCGGCCACAGCCTGCCACACCCGGGAAGTaGGCAAAGCGCCTCTGGCCA +
Preference number: 4 (lower is better)
Translates to: LHSMSSRHQPTPRCRPQPATPGK*AKRLWP
Trigger: TGGCCAGAGGCGCTTTGCCCACTTCCCGGGTGTGGC...AGGCTGTGGCCGGCACCTGGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp GCCAATGAAGGAGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGCTCAGCTCGGCCCGGTaGTTCTCTGGGGGCTCCGGG +
Preference number: 4 (lower is better)
Translates to: ANEGAATQRADCQELCHGLSSAR*FSGGSG
Trigger: CCCGGAGCCCCCAGAGAAGCACCGGGCCGAGCTGAG...CCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCTCCTTCATTGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp AGGGTAACTGATGAGCACTTCCTGGGCACGGGTCAGAGAGCGCGTCATACACCGCTCAGCTCGGCCCGGTaGTTCTCTGGGGGCTCCGGG +
Preference number: 4 (lower is better)
Translates to: RVTDEHFLGTGQRARHTPLSSAR*FSGGSG
Trigger: CCCGGAGCCCCCAGAGAAGCACCGGGCCGAGCTGAG...CGGTGTATGACGCGCTCTCTGACCCGTGCCCAGGAAGTGCTCATCAGTTACCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp CCCGTCACCCCTGGCTGTCACTGGCCTTCACTCCATGAGCAGCAGGCACCAGCCATGGGTGGCGCTCCATaGCACAAGGCTGGGATGTGC +
Preference number: 4 (lower is better)
Translates to: PVTPGCHWPSLHEQQAPAMGGAP*HKAGMC
Trigger: GCACATCCCAGCCTTGTGGCATGGAGCGCCACCCAT...GGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAGTGACAGCCAGGGGTGACGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CCCGTCACCCCTGGCTGTCACTGGCCTTCACTCCATGAGCAGCAGGCACCAGCCGGCTCCGGGACCCACTaGAGCTGGCAGAACTCTCTT +
Preference number: 4 (lower is better)
Translates to: PVTPGCHWPSLHEQQAPAGSGTH*SWQNSL
Trigger: AAGAGAGTTCTGCCAGCTCCAGTGGGTCCCGGAGCC...GGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAGTGACAGCCAGGGGTGACGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR CAA 72 bp ACGGCCAGACCTACCAGCAGATCACCAGGGCACCTCTaGGTCATCCTGGGAGACCCAGGGAGCCAGGCCAGT +
Preference number: 4 (lower is better)
Translates to: TARPTSRSPGHL*VILGDPGSQAS
Trigger: ACTGGCCTGGCTCCCTGGGTCTCCCAGGATGACCAAGAGGTGCCCTGGTGATCTGCTGGTAGGTCTGGCCGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp CTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCAGGTGCCGGCCACAGCCTGGGAGTCCTGGAGGGTaGGCTTCTGTGCCTGGTATG +
Preference number: 4 (lower is better)
Translates to: LHSMSSRHQPTPRCRPQPGSPGG*ASVPGM
Trigger: CATACCAGGCACAGAAGCTCACCCTCCAGGACTCCC...AGGCTGTGGCCGGCACCTGGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp CTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCAGGTGCCGGCCACAGCCTCCCATCGAACAGGGATaGTCAGGGTGGCCCCATCGA +
Preference number: 4 (lower is better)
Translates to: LHSMSSRHQPTPRCRPQPPIEQG*SGWPHR
Trigger: TCGATGGGGCCACCCTGAGCATCCCTGTTCGATGGG...AGGCTGTGGCCGGCACCTGGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp GTCACTGGCCTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCAGGTGCCGGATGGGTGGCGCTCCATaGCACAAGGCTGGGATGTGC +
Preference number: 4 (lower is better)
Translates to: VTGLHSMSSRHQPTPRCRMGGAP*HKAGMC
Trigger: GCACATCCCAGCCTTGTGGCATGGAGCGCCACCCAT...CCGGCACCTGGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAGTGAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCAGGTGCCGGCCACAGCCTCGTCCAGCACCATGGTaGTGTTCCTGGCTTCGGCGT +
Preference number: 4 (lower is better)
Translates to: LHSMSSRHQPTPRCRPQPRPAPW*CSWLRR
Trigger: ACGCCGAAGCCAGGAACACCACCATGGTGCTGGACG...AGGCTGTGGCCGGCACCTGGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCAGGTGCCGGCCACAGCCTGCACGTCCAGCACCATaGTGGTGTTCCTGGCTTCGG +
Preference number: 4 (lower is better)
Translates to: LHSMSSRHQPTPRCRPQPARPAP*WCSWLR
Trigger: CCGAAGCCAGGAACACCACCATGGTGCTGGACGTGC...AGGCTGTGGCCGGCACCTGGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CCAATGAAGGAGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGTCAGAAGCAGTCCCACTaGCGGCGGGCCGGGCTGAGG +
Preference number: 4 (lower is better)
Translates to: PMKEQLPRGPIARSFVMGQKQSH*RRAGLR
Trigger: CCTCAGCCCGGCCCGCCGCCAGTGGGACTGCTTCTG...ACCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCTCCTTCATTGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp TTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTTGGGACAACCTCAGAAGCAGTCCCACTaGCGGCGGGCCGGGCTGAGG +
Preference number: 4 (lower is better)
Translates to: FQAGPQRTCVESASLGQPQKQSH*RRAGLR
Trigger: CCTCAGCCCGGCCCGCCGCCAGTGGGACTGCTTCTG...AGGTTGTCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp TGGGAGACCCAGGGAGCCAGGCCAGTAGAGGAGTGCAGTGGGCCCTTGGTTCAACCTGGACCCCTGAGGTaGGCTCCTGGCCATTCTGCT +
Preference number: 4 (lower is better)
Translates to: WETQGARPVEECSGPLVQPGPLR*APGHSA
Trigger: AGCAGAATGGCCAGGAGCCCACCTCAGGGGTCCAGG...TTGAACCAAGGGCCCACTGCACTCCTCTACTGGCCTGGCTCCCTGGGTCTCCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GCCAATGAAGGAGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGTGGGCAAAGCGCCTCTaGCCAGCGGGCAGCCTCCCT +
Preference number: 4 (lower is better)
Translates to: ANEGAATQRADCQELCHGWAKRL*PAGSLP
Trigger: AGGGAGGCTGCCCGCTGGCCAGAGGCGCTTTGCCCA...CCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCTCCTTCATTGGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp CCCGTCACCCCTGGCTGTCACTGGCCTTCACTCCATGAGCAGCAGGCACCAGCCAGGTCCTTGGGAACCTaGGGAGCCCAGTTCTTCATG +
Preference number: 4 (lower is better)
Translates to: PVTPGCHWPSLHEQQAPARSLGT*GAQFFM
Trigger: CATGAAGAACTGGGCTCCTCAGGTTCCCAAGGACCT...GGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAGTGACAGCCAGGGGTGACGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp CCCCTGGCTGTCACTGGCCTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCCTGCAGAAAGGTGTCTaGAGACAGCAGGAGGGCGCA +
Preference number: 4 (lower is better)
Translates to: PLAVTGLHSMSSRHQPTPLQKGV*RQQEGA
Trigger: TGCGCCCTCCTGCTGTCTTCAGACACCTTTCTGCAG...GGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAGTGACAGCCAGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp CTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCAGGTGCCGGCCACAGCCTTCACAGCCCAGGTCCTaGCTGAAGCCCTCAGCTACA +
Preference number: 4 (lower is better)
Translates to: LHSMSSRHQPTPRCRPQPSQPRS*LKPSAT
Trigger: TGTAGCTGAGGGCTTCAGTCAGGACCTGGGCTGTGA...AGGCTGTGGCCGGCACCTGGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp CTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCAGGTGCCGGCCACAGCCTAGGCCAAGGCCCCACTaGTCAAACCCCCAGAGTCTA +
Preference number: 4 (lower is better)
Translates to: LHSMSSRHQPTPRCRPQPRPRPH*SNPQSL
Trigger: TAGACTCTGGGGGTTTGATCAGTGGGGCCTTGGCCT...AGGCTGTGGCCGGCACCTGGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp GTCACTGGCCTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCAGGTGCCGGAGGCCAAGGCCCCACTaGTCAAACCCCCAGAGTCTA +
Preference number: 4 (lower is better)
Translates to: VTGLHSMSSRHQPTPRCRRPRPH*SNPQSL
Trigger: TAGACTCTGGGGGTTTGATCAGTGGGGCCTTGGCCT...CCGGCACCTGGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAGTGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp CCCCTGGCTGTCACTGGCCTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCCATCTCAGGAAGTACTaGCTCTCACTCGGGGAGGGG +
Preference number: 4 (lower is better)
Translates to: PLAVTGLHSMSSRHQPTPHLRKY*LSLGEG
Trigger: CCCCTCCCCGAGTGAGAGGCAGTACTTCCTGAGATG...GGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAGTGACAGCCAGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CCCCTGGCTGTCACTGGCCTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCATCTGCAGGGAGTCCTaGAGGGTGAGCTTCTGTGCC +
Preference number: 4 (lower is better)
Translates to: PLAVTGLHSMSSRHQPTPICRES*RVSFCA
Trigger: GGCACAGAAGCTCACCCTCCAGGACTCCCTGCAGAT...GGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAGTGACAGCCAGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CCCGTCACCCCTGGCTGTCACTGGCCTTCACTCCATGAGCAGCAGGCACCAGCCACGGCATTGAGCAGCTaGGACTTGGAGTTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: PVTPGCHWPSLHEQQAPATALSS*DLELLL
Trigger: CAGCAGCAACTCCAAGTCCCAGCTGCTCAATGCCGT...GGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAGTGACAGCCAGGGGTGACGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGGTGCTGCGGCCTGAGGTGGGCTCCTaGCCATTCTGCTGCACCCGG +
Preference number: 4 (lower is better)
Translates to: QSRGRQETHVTMCREVLRPEVGS*PFCCTR
Trigger: CCGGGTGCAGCAGAATGGCCAGGAGCCCACCTCAGG...CCGCAGCACCTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp TGGGAGACCCAGGGAGCCAGGCCAGTAGAGGAGTGCAGTGGGCCCTTGGTTCAAGGTGAGAAGGGTCTCTaGAGGCTGTCTTGGCCGTGG +
Preference number: 4 (lower is better)
Translates to: WETQGARPVEECSGPLVQGEKGL*RLSWPW
Trigger: CCACGGCCAAGACAGCCTCCAGAGACCCTTCTCACC...TTGAACCAAGGGCCCACTGCACTCCTCTACTGGCCTGGCTCCCTGGGTCTCCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp TTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTTGGGACAACCTTGGGCAAAGCGCCTCTaGCCAGCGGGCAGCCTCCCT +
Preference number: 4 (lower is better)
Translates to: FQAGPQRTCVESASLGQPWAKRL*PAGSLP
Trigger: AGGGAGGCTGCCCGCTGGCCAGAGGCGCTTTGCCCA...AGGTTGTCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CAACTCCCAGGTGCCGGCCACAGCCTTACTGTCACAGCCTTACTGTCGTTACAGTGGGCAAAGCGCCTCTaGCCAGCGGGCAGCCTCCCT +
Preference number: 4 (lower is better)
Translates to: QLPGAGHSLTVTALLSLQWAKRL*PAGSLP
Trigger: AGGGAGGCTGCCCGCTGGCCAGAGGCGCTTTGCCCA...CTGTAACGACAGTAAGGCTGTGACAGTAAGGCTGTGGCCGGCACCTGGGAGTTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp ACCAGCCAACTCCCAGGTGCCGGCCACAGCCTTACTGTCACAGCCTTACTGTCGCAGGGATGCTCAGGGTaGCCCCATCGACCAGCTCCA +
Preference number: 4 (lower is better)
Translates to: TSQLPGAGHSLTVTALLSQGCSG*PHRPAP
Trigger: TGGAGCTGGTCGATGGGGCCACCCTGAGCATCCCTG...CGACAGTAAGGCTGTGACAGTAAGGCTGTGGCCGGCACCTGGGAGTTGGCTGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp CAGTGCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGACTCAGCTCGGCCCGGTaGTTCTCTGGGGGCTCCGGG +
Preference number: 4 (lower is better)
Translates to: QCLTLCCTSPKPSRLVHRLSSAR*FSGGSG
Trigger: CCCGGAGCCCCCAGAGAAGCACCGGGCCGAGCTGAG...TCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGCACTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp AAGAAAGGGTTCCAGATCAGAGAGCGCACAAGTACCCTGGAACCAAGGGCACCTCTCAGCTCGGCCCGGTaGTTCTCTGGGGGCTCCGGG +
Preference number: 4 (lower is better)
Translates to: KKGFQIRERTSTLEPRAPLSSAR*FSGGSG
Trigger: CCCGGAGCCCCCAGAGAAGCACCGGGCCGAGCTGAG...AGGTGCCCTTGGTTCCAGGGTACTTGTGCGCTCTCTGATCTGGAACCCTTTCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp ACCAGCCAACTCCCAGGTGCCGGCCACAGCCTTACTGTCACAGCCTTACTGTCGGCACGTCCAGCACCATaGTGGTGTTCCTGGCTTCGG +
Preference number: 4 (lower is better)
Translates to: TSQLPGAGHSLTVTALLSARPAP*WCSWLR
Trigger: CCGAAGCCAGGAACACCACCATGGTGCTGGACGTGC...CGACAGTAAGGCTGTGACAGTAAGGCTGTGGCCGGCACCTGGGAGTTGGCTGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CCAATGAAGGAGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGTAGGCTCCGGAGGGGCTaGAACCACCACGTCCGCACA +
Preference number: 4 (lower is better)
Translates to: PMKEQLPRGPIARSFVMGRLRRG*NHHVRT
Trigger: TGTGCGGACGTGGTGGTTCCAGCCCCTCCGGAGCCT...ACCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCTCCTTCATTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CAGAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATCAGAAGCAGTCCCACTaGCGGCGGGCCGGGCTGAGG +
Preference number: 4 (lower is better)
Translates to: QRSTYCLPPHPGPRVILNQKQSH*RRAGLR
Trigger: CCTCAGCCCGGCCCGCCGCCAGTGGGACTGCTTCTG...ATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp AGGGTAACTGATGAGCACTTCCTGGGCACGGGTCAGAGAGCGCGTCATACACCGCCCAGGATGAACTCCTaGACCCCTGAGGTGGGCTCC +
Preference number: 4 (lower is better)
Translates to: RVTDEHFLGTGQRARHTPPRMNS*TPEVGS
Trigger: GGAGCCCACCTCAGGGGTCCAGGAGTTCATCCTGGG...CGGTGTATGACGCGCTCTCTGACCCGTGCCCAGGAAGTGCTCATCAGTTACCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp AAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTTGGGATGGGCAAAGCGCCTCTaGCCAGCGGGCAGCCTCCCT +
Preference number: 4 (lower is better)
Translates to: KTFQAGPQRTCVESASLGWAKRL*PAGSLP
Trigger: AGGGAGGCTGCCCGCTGGCCAGAGGCGCTTTGCCCA...TCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGGTGCTGCGGCAGGGATGCTCAGGGTaGCCCCATCGACCAGCTCCA +
Preference number: 4 (lower is better)
Translates to: QSRGRQETHVTMCREVLRQGCSG*PHRPAP
Trigger: TGGAGCTGGTCGATGGGGCCACCCTGAGCATCCCTG...CCGCAGCACCTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCAGGTGCCGGCCACAGCCTTCCTGTCTCTTGGTTTaGGGCTGGGAACAGGCAGGT +
Preference number: 4 (lower is better)
Translates to: LHSMSSRHQPTPRCRPQPSCLLV*GWEQAG
Trigger: ACCTGCCTGTTCCCAGCCCCAAACCAAGAGACAGGA...AGGCTGTGGCCGGCACCTGGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CCCCTGGCTGTCACTGGCCTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCTCCTGTCTCTTGGTTTaGGGCTGGGAACAGGCAGGT +
Preference number: 4 (lower is better)
Translates to: PLAVTGLHSMSSRHQPTPSCLLV*GWEQAG
Trigger: ACCTGCCTGTTCCCAGCCCCAAACCAAGAGACAGGA...GGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAGTGACAGCCAGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GCCAATGAAGGAGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGCCTGCTCAGGTCGCTTaGCGGATCCAGGAGCTGCCT +
Preference number: 4 (lower is better)
Translates to: ANEGAATQRADCQELCHGPAQVA*RIQELP
Trigger: AGGCAGCTCCTGGATCCGCCAAGCGACCTGAGCAGG...CCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCTCCTTCATTGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp TGGGAGACCCAGGGAGCCAGGCCAGTAGAGGAGTGCAGTGGGCCCTTGGTTCAATCCATGCCACAAGGCTaGGATGTGCCAGACGTGCTG +
Preference number: 4 (lower is better)
Translates to: WETQGARPVEECSGPLVQSMPQG*DVPDVL
Trigger: CAGCACGTCTGGCACATCCCAGCCTTGTGGCATGGA...TTGAACCAAGGGCCCACTGCACTCCTCTACTGGCCTGGCTCCCTGGGTCTCCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp AGGGTAACTGATGAGCACTTCCTGGGCACGGGTCAGAGAGCGCGTCATACACCGGGGAGTCCTGGAGGGTaGGCTTCTGTGCCTGGTATG +
Preference number: 4 (lower is better)
Translates to: RVTDEHFLGTGQRARHTPGSPGG*ASVPGM
Trigger: CATACCAGGCACAGAAGCTCACCCTCCAGGACTCCC...CGGTGTATGACGCGCTCTCTGACCCGTGCCCAGGAAGTGCTCATCAGTTACCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp GCCAATGAAGGAGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGGGGAGTCCTGGAGGGTaGGCTTCTGTGCCTGGTATG +
Preference number: 4 (lower is better)
Translates to: ANEGAATQRADCQELCHGGSPGG*ASVPGM
Trigger: CATACCAGGCACAGAAGCTCACCCTCCAGGACTCCC...CCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCTCCTTCATTGGC
60% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp GTCACTGGCCTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCAGGTGCCGGAGTGGGAGTGCAAACTaGCAGAGGGACATCTTCAGC +
Preference number: 4 (lower is better)
Translates to: VTGLHSMSSRHQPTPRCRSGSAN*QRDIFS
Trigger: GCTGAAGATGTCCCTCTGTCAGTTTGCACTCCCACT...CCGGCACCTGGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAGTGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp CTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCAGGTGCCGGCCACAGCCTAGTGGGAGTGCAAACTaGCAGAGGGACATCTTCAGC +
Preference number: 4 (lower is better)
Translates to: LHSMSSRHQPTPRCRPQPSGSAN*QRDIFS
Trigger: GCTGAAGATGTCCCTCTGTCAGTTTGCACTCCCACT...AGGCTGTGGCCGGCACCTGGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp CCCCTGGCTGTCACTGGCCTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCAAATTGAGGTCCCGATaGCAGAAGCAGTCCCACTGG +
Preference number: 4 (lower is better)
Translates to: PLAVTGLHSMSSRHQPTPKLRSR*QKQSHW
Trigger: CCAGTGGGACTGCTTCTGGCATCGGGACCTCAATTT...GGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAGTGACAGCCAGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp ACCAGCCAACTCCCAGGTGCCGGCCACAGCCTTACTGTCACAGCCTTACTGTCGCATCTCAGGAAGTACTaGCTCTCACTCGGGGAGGGG +
Preference number: 4 (lower is better)
Translates to: TSQLPGAGHSLTVTALLSHLRKY*LSLGEG
Trigger: CCCCTCCCCGAGTGAGAGGCAGTACTTCCTGAGATG...CGACAGTAAGGCTGTGACAGTAAGGCTGTGGCCGGCACCTGGGAGTTGGCTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp AGGGTAACTGATGAGCACTTCCTGGGCACGGGTCAGAGAGCGCGTCATACACCGCCCATCGAACAGGGATaGTCAGGGTGGCCCCATCGA +
Preference number: 4 (lower is better)
Translates to: RVTDEHFLGTGQRARHTPPIEQG*SGWPHR
Trigger: TCGATGGGGCCACCCTGAGCATCCCTGTTCGATGGG...CGGTGTATGACGCGCTCTCTGACCCGTGCCCAGGAAGTGCTCATCAGTTACCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp ACCAGCCAACTCCCAGGTGCCGGCCACAGCCTTACTGTCACAGCCTTACTGTCGATCTGCAGGGAGTCCTaGAGGGTGAGCTTCTGTGCC +
Preference number: 4 (lower is better)
Translates to: TSQLPGAGHSLTVTALLSICRES*RVSFCA
Trigger: GGCACAGAAGCTCACCCTCCAGGACTCCCTGCAGAT...CGACAGTAAGGCTGTGACAGTAAGGCTGTGGCCGGCACCTGGGAGTTGGCTGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GCCAATGAAGGAGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGCGTCCAGCACCATGGTaGTGTTCCTGGCTTCGGCGT +
Preference number: 4 (lower is better)
Translates to: ANEGAATQRADCQELCHGRPAPW*CSWLRR
Trigger: ACGCCGAAGCCAGGAACACCACCATGGTGCTGGACG...CCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCTCCTTCATTGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCAGGCCAGGCCTCTaGAGGCACGTCCAGCACCAT +
Preference number: 4 (lower is better)
Translates to: AAHHQNLPGWSTEDLCGVCRPGL*RHVQHH
Trigger: ATGGTGCTGGACGTGCCTCCAGAGGCCTGGCCTGCA...GACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACAGGCTCCGGAGGGGCTaGAACCACCACGTCCGCACA +
Preference number: 4 (lower is better)
Translates to: ASHFAAHHQNLPGWSTEDRLRRG*NHHVRT
Trigger: TGTGCGGACGTGGTGGTTCCAGCCCCTCCGGAGCCT...GTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp TCATGGGTAAGGAACAGAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCAGGCTCCGGAGGGGCTaGAACCACCACGTCCGCACA +
Preference number: 4 (lower is better)
Translates to: SWVRNRDQLTAYHPTPGLRLRRG*NHHVRT
Trigger: TGTGCGGACGTGGTGGTTCCAGCCCCTCCGGAGCCT...GAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTCTGTTCCTTACCCATGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp TGGGAGACCCAGGGAGCCAGGCCAGTAGAGGAGTGCAGTGGGCCCTTGGTTCAACAAACGTGGGCACCCTaGACAGGACCACACTGTCTT +
Preference number: 4 (lower is better)
Translates to: WETQGARPVEECSGPLVQQTWAP*TGPHCL
Trigger: AAGACAGTGTGGTCCTGTCCAGGGTGCCCACGTTTG...TTGAACCAAGGGCCCACTGCACTCCTCTACTGGCCTGGCTCCCTGGGTCTCCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp AGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGTAAGGAACAGACCTGAGGTGGGCTCCTaGCCATTCTGCTGCACCCGG +
Preference number: 4 (lower is better)
Translates to: SSYPEGRLPGALSWVRNRPEVGS*PFCCTR
Trigger: CCGGGTGCAGCAGAATGGCCAGGAGCCCACCTCAGG...TCTGTTCCTTACCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp ATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCCCTGAGGTGGGCTCCTaGCCATTCTGCTGCACCCGG +
Preference number: 4 (lower is better)
Translates to: ITKTFQAGPQRTCVESASPEVGS*PFCCTR
Trigger: CCGGGTGCAGCAGAATGGCCAGGAGCCCACCTCAGG...GGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCCCTGGACCCCTGAGGTaGGCTCCTGGCCATTCTGCT +
Preference number: 4 (lower is better)
Translates to: AAHHQNLPGWSTEDLCGVPGPLR*APGHSA
Trigger: AGCAGAATGGCCAGGAGCCCACCTCAGGGGTCCAGG...GACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CCAATGAAGGAGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGTCCCAGGATGAACTCCTaGACCCCTGAGGTGGGCTCC +
Preference number: 4 (lower is better)
Translates to: PMKEQLPRGPIARSFVMGPRMNS*TPEVGS
Trigger: GGAGCCCACCTCAGGGGTCCAGGAGTTCATCCTGGG...ACCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCTCCTTCATTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp AAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTTGGGACTCTGGAGGCTGTCTTaGCCGTGGCTGGCCAAGCCG +
Preference number: 4 (lower is better)
Translates to: KTFQAGPQRTCVESASLGLWRLS*PWLAKP
Trigger: CGGCTTGGCCAGCCACGGCCAAGACAGCCTCCAGAG...TCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTCTGGAGGCTGTCTTaGCCGTGGCTGGCCAAGCCG +
Preference number: 4 (lower is better)
Translates to: ASHFAAHHQNLPGWSTEDLWRLS*PWLAKP
Trigger: CGGCTTGGCCAGCCACGGCCAAGACAGCCTCCAGAG...GTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCGCCACACCCGGGAAGTaGGCAAAGCGCCTCTGGCCA +
Preference number: 4 (lower is better)
Translates to: HHQNLPGWSTEDLCGVCFATPGK*AKRLWP
Trigger: TGGCCAGAGGCGCTTTGCCCACTTCCCGGGTGTGGC...GAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGGCCACACCCGGGAAGTaGGCAAAGCGCCTCTGGCCA +
Preference number: 4 (lower is better)
Translates to: LCCTSPKPSRLVHRGPVWATPGK*AKRLWP
Trigger: TGGCCAGAGGCGCTTTGCCCACTTCCCGGGTGTGGC...CCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp TTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGGCCACACCCGGGAAGTaGGCAAAGCGCCTCTGGCCA +
Preference number: 4 (lower is better)
Translates to: LLHITKTFQAGPQRTCVEATPGK*AKRLWP
Trigger: TGGCCAGAGGCGCTTTGCCCACTTCCCGGGTGTGGC...CTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CAACTCCCAGGTGCCGGCCACAGCCTTACTGTCACAGCCTTACTGTCGTTACAGCAGGGATGCTCAGGGTaGCCCCATCGACCAGCTCCA +
Preference number: 4 (lower is better)
Translates to: QLPGAGHSLTVTALLSLQQGCSG*PHRPAP
Trigger: TGGAGCTGGTCGATGGGGCCACCCTGAGCATCCCTG...CTGTAACGACAGTAAGGCTGTGACAGTAAGGCTGTGGCCGGCACCTGGGAGTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCAGGTGCCGGCCACAGCCTCTCTTGGTTTGGGGCTaGGAACAGGCAGGTCATGAA +
Preference number: 4 (lower is better)
Translates to: LHSMSSRHQPTPRCRPQPLLVWG*EQAGHE
Trigger: TTCATGACCTGCCTGTTCCCAGCCCCAAACCAAGAG...AGGCTGTGGCCGGCACCTGGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp TGGGAGACCCAGGGAGCCAGGCCAGTAGAGGAGTGCAGTGGGCCCTTGGTTCAATCCTGTCTCTTGGTTTaGGGCTGGGAACAGGCAGGT +
Preference number: 4 (lower is better)
Translates to: WETQGARPVEECSGPLVQSCLLV*GWEQAG
Trigger: ACCTGCCTGTTCCCAGCCCCAAACCAAGAGACAGGA...TTGAACCAAGGGCCCACTGCACTCCTCTACTGGCCTGGCTCCCTGGGTCTCCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp TTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGCACAGCGGCCATGGGTaGCGCTCCATGCCACAAGGC +
Preference number: 4 (lower is better)
Translates to: LLHITKTFQAGPQRTCVEHSGHG*RSMPQG
Trigger: GCCTTGTGGCATGGAGCGCCACCCATGGCCGCTGTG...CTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GCAGTGCCATGGCAGTGCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGCACAGCGGCCATGGGTaGCGCTCCATGCCACAAGGC +
Preference number: 4 (lower is better)
Translates to: AVPWQCLTLCCTSPKPSRHSGHG*RSMPQG
Trigger: GCCTTGTGGCATGGAGCGCCACCCATGGCCGCTGTG...CCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGCACTGCCATGGCACTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR CAA 72 bp GCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTaGGGACAACCTGAAACACCCCTGTCTGCCAGCAGC +
Preference number: 4 (lower is better)
Translates to: AGPQRTCVESAS*GQPETPLSASS
Trigger: GCTGCTGGCAGACAGGGGTGTTTCAGGTTGTCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp GCCAATGAAGGAGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGGTGCCTGCAGCTTCCTaGGGAAATGCCAGGGAAGGT +
Preference number: 4 (lower is better)
Translates to: ANEGAATQRADCQELCHGVPAAS*GNAREG
Trigger: ACCTTCCCTGGCATTTCCTCAGGAAGCTGCAGGCAC...CCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCTCCTTCATTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp AGGGTAACTGATGAGCACTTCCTGGGCACGGGTCAGAGAGCGCGTCATACACCGGTGCCTGCAGCTTCCTaGGGAAATGCCAGGGAAGGT +
Preference number: 4 (lower is better)
Translates to: RVTDEHFLGTGQRARHTPVPAAS*GNAREG
Trigger: ACCTTCCCTGGCATTTCCTCAGGAAGCTGCAGGCAC...CGGTGTATGACGCGCTCTCTGACCCGTGCCCAGGAAGTGCTCATCAGTTACCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp GTCACTGGCCTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCAGGTGCCGGACCTTCACCAGGACGTaGGAGTGGTCTATCTTCAAC +
Preference number: 4 (lower is better)
Translates to: VTGLHSMSSRHQPTPRCRTFTRT*EWSIFN
Trigger: GTTGAAGATAGACCACTCTCACGTCCTGGTGAAGGT...CCGGCACCTGGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAGTGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp CCCCTGGCTGTCACTGGCCTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCAGCCTTAGAAACGCATaGAGAACAGCTGGTGGGATG +
Preference number: 4 (lower is better)
Translates to: PLAVTGLHSMSSRHQPTPSLRNA*RTAGGM
Trigger: CATCCCACCAGCTGTTCTTCATGCGTTTCTAAGGCT...GGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAGTGACAGCCAGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp TGGGAGACCCAGGGAGCCAGGCCAGTAGAGGAGTGCAGTGGGCCCTTGGTTCAAAAATTGAGGTCCCGATaGCAGAAGCAGTCCCACTGG +
Preference number: 4 (lower is better)
Translates to: WETQGARPVEECSGPLVQKLRSR*QKQSHW
Trigger: CCAGTGGGACTGCTTCTGGCATCGGGACCTCAATTT...TTGAACCAAGGGCCCACTGCACTCCTCTACTGGCCTGGCTCCCTGGGTCTCCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp CCCCTGGCTGTCACTGGCCTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCCTCCATCCGGTCCTTTaGCTTCTGACACTCCTCAAA +
Preference number: 4 (lower is better)
Translates to: PLAVTGLHSMSSRHQPTPLHPVL*LLTLLK
Trigger: TTTGAGGAGTGTCAGAAGGCAAAGGACCGGATGGAG...GGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAGTGACAGCCAGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp CTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCAGGTGCCGGCCACAGCCTCTCCATCCGGTCCTTTaGCTTCTGACACTCCTCAAA +
Preference number: 4 (lower is better)
Translates to: LHSMSSRHQPTPRCRPQPLHPVL*LLTLLK
Trigger: TTTGAGGAGTGTCAGAAGGCAAAGGACCGGATGGAG...AGGCTGTGGCCGGCACCTGGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp CCAATGAAGGAGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGTATGGGTGGCGCTCCATaGCACAAGGCTGGGATGTGC +
Preference number: 4 (lower is better)
Translates to: PMKEQLPRGPIARSFVMGMGGAP*HKAGMC
Trigger: GCACATCCCAGCCTTGTGGCATGGAGCGCCACCCAT...ACCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCTCCTTCATTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCGCACGTCCAGCACCATaGTGGTGTTCCTGGCTTCGG +
Preference number: 4 (lower is better)
Translates to: AAHHQNLPGWSTEDLCGVARPAP*WCSWLR
Trigger: CCGAAGCCAGGAACACCACCATGGTGCTGGACGTGC...GACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATGGTGTGCAGGCCAGGCCTCTaGAGGCACGTCCAGCACCAT +
Preference number: 4 (lower is better)
Translates to: DQLTAYHPTPGLGLFSMVCRPGL*RHVQHH
Trigger: ATGGTGCTGGACGTGCCTCCAGAGGCCTGGCCTGCA...CACCATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp ATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTGCAGGCCAGGCCTCTaGAGGCACGTCCAGCACCAT +
Preference number: 4 (lower is better)
Translates to: ITKTFQAGPQRTCVESASCRPGL*RHVQHH
Trigger: ATGGTGCTGGACGTGCCTCCAGAGGCCTGGCCTGCA...GGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CCCCTGGCTGTCACTGGCCTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCATCGGGCAACACAAGTaGGAGTGCAAACTGACAGAG +
Preference number: 4 (lower is better)
Translates to: PLAVTGLHSMSSRHQPTPIGQHK*ECKLTE
Trigger: CTCTGTCAGTTTGCACTCCCACTTGTGTTGCCCGAT...GGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAGTGACAGCCAGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp ACCAGCCAACTCCCAGGTGCCGGCCACAGCCTTACTGTCACAGCCTTACTGTCGCAAACGTGGGCACCCTaGACAGGACCACACTGTCTT +
Preference number: 4 (lower is better)
Translates to: TSQLPGAGHSLTVTALLSQTWAP*TGPHCL
Trigger: AAGACAGTGTGGTCCTGTCCAGGGTGCCCACGTTTG...CGACAGTAAGGCTGTGACAGTAAGGCTGTGGCCGGCACCTGGGAGTTGGCTGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCGGCTCCGGGACCCACTaGAGCTGGCAGAACTCTCTT +
Preference number: 4 (lower is better)
Translates to: AAHHQNLPGWSTEDLCGVGSGTH*SWQNSL
Trigger: AAGAGAGTTCTGCCAGCTCCAGTGGGTCCCGGAGCC...GACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp AACTCACAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGGTGCCTGAGGTGGGCTCCTaGCCATTCTGCTGCACCCGG +
Preference number: 4 (lower is better)
Translates to: NSQSRGRQETHVTMCREVPEVGS*PFCCTR
Trigger: CCGGGTGCAGCAGAATGGCCAGGAGCCCACCTCAGG...CACCTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTGTGAGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp ATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCCCTGGACCCCTGAGGTaGGCTCCTGGCCATTCTGCT +
Preference number: 4 (lower is better)
Translates to: ITKTFQAGPQRTCVESASPGPLR*APGHSA
Trigger: AGCAGAATGGCCAGGAGCCCACCTCAGGGGTCCAGG...GGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp TTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGCCCAGGATGAACTCCTaGACCCCTGAGGTGGGCTCC +
Preference number: 4 (lower is better)
Translates to: LLHITKTFQAGPQRTCVEPRMNS*TPEVGS
Trigger: GGAGCCCACCTCAGGGGTCCAGGAGTTCATCCTGGG...CTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCCCAGGATGAACTCCTaGACCCCTGAGGTGGGCTCC +
Preference number: 4 (lower is better)
Translates to: ASHFAAHHQNLPGWSTEDPRMNS*TPEVGS
Trigger: GGAGCCCACCTCAGGGGTCCAGGAGTTCATCCTGGG...GTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GCAGTGCCATGGCAGTGCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGCCCAGGATGAACTCCTaGACCCCTGAGGTGGGCTCC +
Preference number: 4 (lower is better)
Translates to: AVPWQCLTLCCTSPKPSRPRMNS*TPEVGS
Trigger: GGAGCCCACCTCAGGGGTCCAGGAGTTCATCCTGGG...CCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGCACTGCCATGGCACTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CAGTGCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGACTCTGGAGGCTGTCTTaGCCGTGGCTGGCCAAGCCG +
Preference number: 4 (lower is better)
Translates to: QCLTLCCTSPKPSRLVHRLWRLS*PWLAKP
Trigger: CGGCTTGGCCAGCCACGGCCAAGACAGCCTCCAGAG...TCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGCACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCGGTGAGAAGGGTCTCTaGAGGCTGTCTTGGCCGTGG +
Preference number: 4 (lower is better)
Translates to: AAHHQNLPGWSTEDLCGVGEKGL*RLSWPW
Trigger: CCACGGCCAAGACAGCCTCCAGAGACCCTTCTCACC...GACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp ACCAGCCAACTCCCAGGTGCCGGCCACAGCCTTACTGTCACAGCCTTACTGTCGGCCCCATTAGCAGTGTaGCCAAGGAAGCCTCCAGTT +
Preference number: 4 (lower is better)
Translates to: TSQLPGAGHSLTVTALLSAPLAV*PRKPPV
Trigger: AACTGGAGGCTTCCTTGGCCACACTGCTAATGGGGC...CGACAGTAAGGCTGTGACAGTAAGGCTGTGGCCGGCACCTGGGAGTTGGCTGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp TTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGCCTGCTCAGGTCGCTTaGCGGATCCAGGAGCTGCCT +
Preference number: 4 (lower is better)
Translates to: LLHITKTFQAGPQRTCVEPAQVA*RIQELP
Trigger: AGGCAGCTCCTGGATCCGCCAAGCGACCTGAGCAGG...CTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp TCATGGGTAAGGAACAGAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCCCTGCTCAGGTCGCTTaGCGGATCCAGGAGCTGCCT +
Preference number: 4 (lower is better)
Translates to: SWVRNRDQLTAYHPTPGLPAQVA*RIQELP
Trigger: AGGCAGCTCCTGGATCCGCCAAGCGACCTGAGCAGG...GAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTCTGTTCCTTACCCATGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CAGAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATCACAGCGGCCATGGGTaGCGCTCCATGCCACAAGGC +
Preference number: 4 (lower is better)
Translates to: QRSTYCLPPHPGPRVILNHSGHG*RSMPQG
Trigger: GCCTTGTGGCATGGAGCGCCACCCATGGCCGCTGTG...ATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CCCGTCACCCCTGGCTGTCACTGGCCTTCACTCCATGAGCAGCAGGCACCAGCCAGCTGCTGGATGTTTTaGTTCTGGTTGGACAAGCCA +
Preference number: 4 (lower is better)
Translates to: PVTPGCHWPSLHEQQAPASCWMF*FWLDKP
Trigger: TGGCTTGTCCAACCAGAACCAAAACATCCAGCAGCT...GGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAGTGACAGCCAGGGGTGACGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp CAACTCCCAGGTGCCGGCCACAGCCTTACTGTCACAGCCTTACTGTCGTTACAGGTGCCTGCAGCTTCCTaGGGAAATGCCAGGGAAGGT +
Preference number: 4 (lower is better)
Translates to: QLPGAGHSLTVTALLSLQVPAAS*GNAREG
Trigger: ACCTTCCCTGGCATTTCCTCAGGAAGCTGCAGGCAC...CTGTAACGACAGTAAGGCTGTGACAGTAAGGCTGTGGCCGGCACCTGGGAGTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp CCAATGAAGGAGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGTGTGCCTGCAGCTTCCTaGGGAAATGCCAGGGAAGGT +
Preference number: 4 (lower is better)
Translates to: PMKEQLPRGPIARSFVMGVPAAS*GNAREG
Trigger: ACCTTCCCTGGCATTTCCTCAGGAAGCTGCAGGCAC...ACCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCTCCTTCATTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp CAACTCCCAGGTGCCGGCCACAGCCTTACTGTCACAGCCTTACTGTCGTTACAGCTGCAGAAAGGTGTCTaGAGACAGCAGGAGGGCGCA +
Preference number: 4 (lower is better)
Translates to: QLPGAGHSLTVTALLSLQLQKGV*RQQEGA
Trigger: TGCGCCCTCCTGCTGTCTTCAGACACCTTTCTGCAG...CTGTAACGACAGTAAGGCTGTGACAGTAAGGCTGTGGCCGGCACCTGGGAGTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp CAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGGTGCTGCGGACTTGGAGTTGCTGCTaGCATCCATGCGCACGAAGG +
Preference number: 4 (lower is better)
Translates to: QSRGRQETHVTMCREVLRTWSCC*HPCARR
Trigger: CCTTCGTGCGCATGGATGTCAGCAGCAACTCCAAGT...CCGCAGCACCTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp CCCCTGGCTGTCACTGGCCTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCGGTAGGGACTCAGGATaGAGTAGTACTTTGTGGTTG +
Preference number: 4 (lower is better)
Translates to: PLAVTGLHSMSSRHQPTPGRDSG*SSTLWL
Trigger: CAACCACAAAGTACTACTTCATCCTGAGTCCCTACC...GGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAGTGACAGCCAGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp CCAATGAAGGAGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGTAGGCCAAGGCCCCACTaGTCAAACCCCCAGAGTCTA +
Preference number: 4 (lower is better)
Translates to: PMKEQLPRGPIARSFVMGRPRPH*SNPQSL
Trigger: TAGACTCTGGGGGTTTGATCAGTGGGGCCTTGGCCT...ACCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCTCCTTCATTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp TGGGAGACCCAGGGAGCCAGGCCAGTAGAGGAGTGCAGTGGGCCCTTGGTTCAAAGCCTTAGAAACGCATaGAGAACAGCTGGTGGGATG +
Preference number: 4 (lower is better)
Translates to: WETQGARPVEECSGPLVQSLRNA*RTAGGM
Trigger: CATCCCACCAGCTGTTCTTCATGCGTTTCTAAGGCT...TTGAACCAAGGGCCCACTGCACTCCTCTACTGGCCTGGCTCCCTGGGTCTCCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp ACCAGCCAACTCCCAGGTGCCGGCCACAGCCTTACTGTCACAGCCTTACTGTCGCTGTCAAAACTGATCTaGAGGGAGTCCTGGAGGGTG +
Preference number: 4 (lower is better)
Translates to: TSQLPGAGHSLTVTALLSLSKLI*RESWRV
Trigger: CACCCTCCAGGACTCCCTGCAGATCAGTTTTGACAG...CGACAGTAAGGCTGTGACAGTAAGGCTGTGGCCGGCACCTGGGAGTTGGCTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp GGTAAGGAACAGAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTCATCTCAGGAAGTACTaGCTCTCACTCGGGGAGGGG +
Preference number: 4 (lower is better)
Translates to: GKEQRSTYCLPPHPGPRVHLRKY*LSLGEG
Trigger: CCCCTCCCCGAGTGAGAGGCAGTACTTCCTGAGATG...AACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTCTGTTCCTTACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp TTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGCCCATCGAACAGGGATaGTCAGGGTGGCCCCATCGA +
Preference number: 4 (lower is better)
Translates to: LLHITKTFQAGPQRTCVEPIEQG*SGWPHR
Trigger: TCGATGGGGCCACCCTGAGCATCCCTGTTCGATGGG...CTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp CATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCCCATCGAACAGGGATaGTCAGGGTGGCCCCATCGA +
Preference number: 4 (lower is better)
Translates to: HHQNLPGWSTEDLCGVCFPIEQG*SGWPHR
Trigger: TCGATGGGGCCACCCTGAGCATCCCTGTTCGATGGG...GAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp AAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTTGGGAATGGGTGGCGCTCCATaGCACAAGGCTGGGATGTGC +
Preference number: 4 (lower is better)
Translates to: KTFQAGPQRTCVESASLGMGGAP*HKAGMC
Trigger: GCACATCCCAGCCTTGTGGCATGGAGCGCCACCCAT...TCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp AGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGTAAGGAACAGAATGGGTGGCGCTCCATaGCACAAGGCTGGGATGTGC +
Preference number: 4 (lower is better)
Translates to: SSYPEGRLPGALSWVRNRMGGAP*HKAGMC
Trigger: GCACATCCCAGCCTTGTGGCATGGAGCGCCACCCAT...TCTGTTCCTTACCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CCAATGAAGGAGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGTATCTGCAGGGAGTCCTaGAGGGTGAGCTTCTGTGCC +
Preference number: 4 (lower is better)
Translates to: PMKEQLPRGPIARSFVMGICRES*RVSFCA
Trigger: GGCACAGAAGCTCACCCTCCAGGACTCCCTGCAGAT...ACCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCTCCTTCATTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp TTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGCGTCCAGCACCATGGTaGTGTTCCTGGCTTCGGCGT +
Preference number: 4 (lower is better)
Translates to: LLHITKTFQAGPQRTCVERPAPW*CSWLRR
Trigger: ACGCCGAAGCCAGGAACACCACCATGGTGCTGGACG...CTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp TTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGGCACGTCCAGCACCATaGTGGTGTTCCTGGCTTCGG +
Preference number: 4 (lower is better)
Translates to: LLHITKTFQAGPQRTCVEARPAP*WCSWLR
Trigger: CCGAAGCCAGGAACACCACCATGGTGCTGGACGTGC...CTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATGGTGGCACGTCCAGCACCATaGTGGTGTTCCTGGCTTCGG +
Preference number: 4 (lower is better)
Translates to: DQLTAYHPTPGLGLFSMVARPAP*WCSWLR
Trigger: CCGAAGCCAGGAACACCACCATGGTGCTGGACGTGC...CACCATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp AGGGTAACTGATGAGCACTTCCTGGGCACGGGTCAGAGAGCGCGTCATACACCGCAAACGTGGGCACCCTaGACAGGACCACACTGTCTT +
Preference number: 4 (lower is better)
Translates to: RVTDEHFLGTGQRARHTPQTWAP*TGPHCL
Trigger: AAGACAGTGTGGTCCTGTCCAGGGTGCCCACGTTTG...CGGTGTATGACGCGCTCTCTGACCCGTGCCCAGGAAGTGCTCATCAGTTACCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp TTTGCTGAATCTAGTAAAAGGACAAGACACAGGAGAGGTTCTCAGGCCATGGCCCAGAAGCAGTCCCACTaGCGGCGGGCCGGGCTGAGG +
Preference number: 4 (lower is better)
Translates to: FAESSKRTRHRRGSQAMAQKQSH*RRAGLR
Trigger: CCTCAGCCCGGCCCGCCGCCAGTGGGACTGCTTCTG...GGCCATGGCCTGAGAACCTCTCCTGTGTCTTGTCCTTTTACTAGATTCAGCAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GCCAATGAAGGAGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGGGGACCCACTGGAGCTaGCAGAACTCTCTTTCAGCT +
Preference number: 4 (lower is better)
Translates to: ANEGAATQRADCQELCHGGTHWS*QNSLSA
Trigger: AGCTGAAAGAGAGTTCTGCCAGCTCCAGTGGGTCCC...CCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCTCCTTCATTGGC
58% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp ATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCGGCTCCGGGACCCACTaGAGCTGGCAGAACTCTCTT +
Preference number: 4 (lower is better)
Translates to: ITKTFQAGPQRTCVESASGSGTH*SWQNSL
Trigger: AAGAGAGTTCTGCCAGCTCCAGTGGGTCCCGGAGCC...GGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp AGCAACTCACAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGCCTGGACCCCTGAGGTaGGCTCCTGGCCATTCTGCT +
Preference number: 4 (lower is better)
Translates to: SNSQSRGRQETHVTMCREPGPLR*APGHSA
Trigger: AGCAGAATGGCCAGGAGCCCACCTCAGGGGTCCAGG...CTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTGTGAGTTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CAGAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATCCTGGACCCCTGAGGTaGGCTCCTGGCCATTCTGCT +
Preference number: 4 (lower is better)
Translates to: QRSTYCLPPHPGPRVILNPGPLR*APGHSA
Trigger: AGCAGAATGGCCAGGAGCCCACCTCAGGGGTCCAGG...ATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp AAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTTGGGAGGTGAGAAGGGTCTCTaGAGGCTGTCTTGGCCGTGG +
Preference number: 4 (lower is better)
Translates to: KTFQAGPQRTCVESASLGGEKGL*RLSWPW
Trigger: CCACGGCCAAGACAGCCTCCAGAGACCCTTCTCACC...TCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp TTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGGGTGAGAAGGGTCTCTaGAGGCTGTCTTGGCCGTGG +
Preference number: 4 (lower is better)
Translates to: LLHITKTFQAGPQRTCVEGEKGL*RLSWPW
Trigger: CCACGGCCAAGACAGCCTCCAGAGACCCTTCTCACC...CTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp AAGAAAGGGTTCCAGATCAGAGAGCGCACAAGTACCCTGGAACCAAGGGCACCTCAGGGATGCTCAGGGTaGCCCCATCGACCAGCTCCA +
Preference number: 4 (lower is better)
Translates to: KKGFQIRERTSTLEPRAPQGCSG*PHRPAP
Trigger: TGGAGCTGGTCGATGGGGCCACCCTGAGCATCCCTG...AGGTGCCCTTGGTTCCAGGGTACTTGTGCGCTCTCTGATCTGGAACCCTTTCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp AGCAACTCACAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGCAGGGATGCTCAGGGTaGCCCCATCGACCAGCTCCA +
Preference number: 4 (lower is better)
Translates to: SNSQSRGRQETHVTMCREQGCSG*PHRPAP
Trigger: TGGAGCTGGTCGATGGGGCCACCCTGAGCATCCCTG...CTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTGTGAGTTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GCCAATGAAGGAGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGTCCTGTCTCTTGGTTTaGGGCTGGGAACAGGCAGGT +
Preference number: 4 (lower is better)
Translates to: ANEGAATQRADCQELCHGSCLLV*GWEQAG
Trigger: ACCTGCCTGTTCCCAGCCCCAAACCAAGAGACAGGA...CCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCTCCTTCATTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp GCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCAGGGACAGCATCTCCTaGAGCCTGCTTCTCTCCACT +
Preference number: 4 (lower is better)
Translates to: AAHHQNLPGWSTEDLCGVRDSIS*SLLLST
Trigger: AGTGGAGAGAAGCAGGCTTCAGGAGATGCTGTCCCT...GACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp AACTCACAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGGTGGGGAGTCCTGGAGGGTaGGCTTCTGTGCCTGGTATG +
Preference number: 4 (lower is better)
Translates to: NSQSRGRQETHVTMCREVGSPGG*ASVPGM
Trigger: CATACCAGGCACAGAAGCTCACCCTCCAGGACTCCC...CACCTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTGTGAGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp TTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGGTGCCTGCAGCTTCCTaGGGAAATGCCAGGGAAGGT +
Preference number: 4 (lower is better)
Translates to: LLHITKTFQAGPQRTCVEVPAAS*GNAREG
Trigger: ACCTTCCCTGGCATTTCCTCAGGAAGCTGCAGGCAC...CTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp GCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGCAGAAAGGTGTCTaGAGACAGCAGGAGGGCGCA +
Preference number: 4 (lower is better)
Translates to: ASHFAAHHQNLPGWSTEDLQKGV*RQQEGA
Trigger: TGCGCCCTCCTGCTGTCTTCAGACACCTTTCTGCAG...GTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp GTCACTGGCCTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCAGGTGCCGGGTAGTACTTTGTGGTTaGCTCCTTCATGGAGTACAG +
Preference number: 4 (lower is better)
Translates to: VTGLHSMSSRHQPTPRCRVVLCG*LLHGVQ
Trigger: CTGTACTCCATGAAGGAGTCAACCACAAAGTACTAC...CCGGCACCTGGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAGTGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp AAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTTGGGATCACAGCCCAGGTCCTaGCTGAAGCCCTCAGCTACA +
Preference number: 4 (lower is better)
Translates to: KTFQAGPQRTCVESASLGSQPRS*LKPSAT
Trigger: TGTAGCTGAGGGCTTCAGTCAGGACCTGGGCTGTGA...TCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp CTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGGCCAAGGCCCCACTaGTCAAACCCCCAGAGTCTA +
Preference number: 4 (lower is better)
Translates to: LCCTSPKPSRLVHRGPVWRPRPH*SNPQSL
Trigger: TAGACTCTGGGGGTTTGATCAGTGGGGCCTTGGCCT...CCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp ATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCAGGCCAAGGCCCCACTaGTCAAACCCCCAGAGTCTA +
Preference number: 4 (lower is better)
Translates to: ITKTFQAGPQRTCVESASRPRPH*SNPQSL
Trigger: TAGACTCTGGGGGTTTGATCAGTGGGGCCTTGGCCT...GGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp AGGGTAACTGATGAGCACTTCCTGGGCACGGGTCAGAGAGCGCGTCATACACCGTGCGCAGCAGCTCAATaGGCTGCTGGATGTTTTGGT +
Preference number: 4 (lower is better)
Translates to: RVTDEHFLGTGQRARHTPCAAAQ*AAGCFG
Trigger: ACCAAAACATCCAGCAGCTCATTGAGCTGCTGCGCA...CGGTGTATGACGCGCTCTCTGACCCGTGCCCAGGAAGTGCTCATCAGTTACCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp GCCAATGAAGGAGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGTGCGCAGCAGCTCAATaGGCTGCTGGATGTTTTGGT +
Preference number: 4 (lower is better)
Translates to: ANEGAATQRADCQELCHGCAAAQ*AAGCFG
Trigger: ACCAAAACATCCAGCAGCTCATTGAGCTGCTGCGCA...CCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCTCCTTCATTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp GCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTCGGCGTTGAGTGCCTaGAGCTTCCTGAGGAAATGC +
Preference number: 4 (lower is better)
Translates to: AAHHQNLPGWSTEDLCGVSALSA*SFLRKC
Trigger: GCATTTCCTCAGGAAGCTGCAGGCACTCAACGCCGA...GACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp TTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGGGCTTCGGCGTTGAGTaGCTGCAGCTTCCTGAGGAA +
Preference number: 4 (lower is better)
Translates to: LLHITKTFQAGPQRTCVEGFGVE*LQLPEE
Trigger: TTCCTCAGGAAGCTGCAGGCACTCAACGCCGAAGCC...CTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp GCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACGGCTTCGGCGTTGAGTaGCTGCAGCTTCCTGAGGAA +
Preference number: 4 (lower is better)
Translates to: ASHFAAHHQNLPGWSTEDGFGVE*LQLPEE
Trigger: TTCCTCAGGAAGCTGCAGGCACTCAACGCCGAAGCC...GTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp AGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGTAAGGAACAGACATCTCAGGAAGTACTaGCTCTCACTCGGGGAGGGG +
Preference number: 4 (lower is better)
Translates to: SSYPEGRLPGALSWVRNRHLRKY*LSLGEG
Trigger: CCCCTCCCCGAGTGAGAGGCAGTACTTCCTGAGATG...TCTGTTCCTTACCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp TTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGGGCGGATCCAGGAGCTaGCTCCTGTCTCTTGGTTTG +
Preference number: 4 (lower is better)
Translates to: LLHITKTFQAGPQRTCVEGGSRS*LLSLGL
Trigger: CAAACCAAGAGACAGGAGGCAGCTCCTGGATCCGCC...CTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp AGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGTAAGGAACAGAGGCGGATCCAGGAGCTaGCTCCTGTCTCTTGGTTTG +
Preference number: 4 (lower is better)
Translates to: SSYPEGRLPGALSWVRNRGGSRS*LLSLGL
Trigger: CAAACCAAGAGACAGGAGGCAGCTCCTGGATCCGCC...TCTGTTCCTTACCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp ATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCGGCGGATCCAGGAGCTaGCTCCTGTCTCTTGGTTTG +
Preference number: 4 (lower is better)
Translates to: ITKTFQAGPQRTCVESASGGSRS*LLSLGL
Trigger: CAAACCAAGAGACAGGAGGCAGCTCCTGGATCCGCC...GGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CTAGTAAAAGGACAAGACACAGGAGAGGTTCTCAGGCCATGGCCTGACTTCTCTAGGCTCCGGAGGGGCTaGAACCACCACGTCCGCACA +
Preference number: 4 (lower is better)
Translates to: LVKGQDTGEVLRPWPDFSRLRRG*NHHVRT
Trigger: TGTGCGGACGTGGTGGTTCCAGCCCCTCCGGAGCCT...AGAGAAGTCAGGCCATGGCCTGAGAACCTCTCCTGTGTCTTGTCCTTTTACTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp TTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTTGGGACAACCTGGGACCCACTGGAGCTaGCAGAACTCTCTTTCAGCT +
Preference number: 4 (lower is better)
Translates to: FQAGPQRTCVESASLGQPGTHWS*QNSLSA
Trigger: AGCTGAAAGAGAGTTCTGCCAGCTCCAGTGGGTCCC...AGGTTGTCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CAACTCCCAGGTGCCGGCCACAGCCTTACTGTCACAGCCTTACTGTCGTTACAGGGGACCCACTGGAGCTaGCAGAACTCTCTTTCAGCT +
Preference number: 4 (lower is better)
Translates to: QLPGAGHSLTVTALLSLQGTHWS*QNSLSA
Trigger: AGCTGAAAGAGAGTTCTGCCAGCTCCAGTGGGTCCC...CTGTAACGACAGTAAGGCTGTGACAGTAAGGCTGTGGCCGGCACCTGGGAGTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp AGCAACTCACAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGGGCTCCGGGACCCACTaGAGCTGGCAGAACTCTCTT +
Preference number: 4 (lower is better)
Translates to: SNSQSRGRQETHVTMCREGSGTH*SWQNSL
Trigger: AAGAGAGTTCTGCCAGCTCCAGTGGGTCCCGGAGCC...CTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTGTGAGTTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CAGAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATGGTGAGAAGGGTCTCTaGAGGCTGTCTTGGCCGTGG +
Preference number: 4 (lower is better)
Translates to: QRSTYCLPPHPGPRVILNGEKGL*RLSWPW
Trigger: CCACGGCCAAGACAGCCTCCAGAGACCCTTCTCACC...ATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCGCCCCATTAGCAGTGTaGCCAAGGAAGCCTCCAGTT +
Preference number: 4 (lower is better)
Translates to: AAHHQNLPGWSTEDLCGVAPLAV*PRKPPV
Trigger: AACTGGAGGCTTCCTTGGCCACACTGCTAATGGGGC...GACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GGTAAGGAACAGAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTGCCCCATTAGCAGTGTaGCCAAGGAAGCCTCCAGTT +
Preference number: 4 (lower is better)
Translates to: GKEQRSTYCLPPHPGPRVAPLAV*PRKPPV
Trigger: AACTGGAGGCTTCCTTGGCCACACTGCTAATGGGGC...AACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTCTGTTCCTTACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp TTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTTGGGACAACCTTCCTGTCTCTTGGTTTaGGGCTGGGAACAGGCAGGT +
Preference number: 4 (lower is better)
Translates to: FQAGPQRTCVESASLGQPSCLLV*GWEQAG
Trigger: ACCTGCCTGTTCCCAGCCCCAAACCAAGAGACAGGA...AGGTTGTCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp TTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGCTGCCTCCTGTCTCTTaGTTTGGGGCTGGGAACAGG +
Preference number: 4 (lower is better)
Translates to: LLHITKTFQAGPQRTCVELPPVS*FGAGNR
Trigger: CCTGTTCCCAGCCCCAAACCAAGAGACAGGAGGCAG...CTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CCTCTTCAGGCAGAGGCTGCTGTCCTAAGCATGAGGACAATGAAGGCGTGGAGACTGCCTCCTGTCTCTTaGTTTGGGGCTGGGAACAGG +
Preference number: 4 (lower is better)
Translates to: PLQAEAAVLSMRTMKAWRLPPVS*FGAGNR
Trigger: CCTGTTCCCAGCCCCAAACCAAGAGACAGGAGGCAG...TCTCCACGCCTTCATTGTCCTCATGCTTAGGACAGCAGCCTCTGCCTGAAGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGTCCATGCCACAAGGCTaGGATGTGCCAGACGTGCTG +
Preference number: 4 (lower is better)
Translates to: LCCTSPKPSRLVHRGPVWSMPQG*DVPDVL
Trigger: CAGCACGTCTGGCACATCCCAGCCTTGTGGCATGGA...CCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GCAGTGCCATGGCAGTGCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGTCCATGCCACAAGGCTaGGATGTGCCAGACGTGCTG +
Preference number: 4 (lower is better)
Translates to: AVPWQCLTLCCTSPKPSRSMPQG*DVPDVL
Trigger: CAGCACGTCTGGCACATCCCAGCCTTGTGGCATGGA...CCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGCACTGCCATGGCACTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp TTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCCATGCCACAAGGCTaGGATGTGCCAGACGTGCTG +
Preference number: 4 (lower is better)
Translates to: LLHITKTFQAGPQRTCVESMPQG*DVPDVL
Trigger: CAGCACGTCTGGCACATCCCAGCCTTGTGGCATGGA...CTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CCCGTCACCCCTGGCTGTCACTGGCCTTCACTCCATGAGCAGCAGGCACCAGCCTCTTCAATTCAAAAATaGCCTCACTGTAGCCCAAGC +
Preference number: 4 (lower is better)
Translates to: PVTPGCHWPSLHEQQAPASSIQK*PHCSPS
Trigger: GCTTGGGCTACAGTGAGGCCATTTTTGAATTGAAGA...GGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAGTGACAGCCAGGGGTGACGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp GATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATGGTGAGGTCCTTGGGAACCTaGGGAGCCCAGTTCTTCATG +
Preference number: 4 (lower is better)
Translates to: DQLTAYHPTPGLGLFSMVRSLGT*GAQFFM
Trigger: CATGAAGAACTGGGCTCCTCAGGTTCCCAAGGACCT...CACCATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp GCAGTGCCATGGCAGTGCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGAGGTCCTTGGGAACCTaGGGAGCCCAGTTCTTCATG +
Preference number: 4 (lower is better)
Translates to: AVPWQCLTLCCTSPKPSRRSLGT*GAQFFM
Trigger: CATGAAGAACTGGGCTCCTCAGGTTCCCAAGGACCT...CCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGCACTGCCATGGCACTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp TCATGGGTAAGGAACAGAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCACTTGGAGTTGCTGCTaGCATCCATGCGCACGAAGG +
Preference number: 4 (lower is better)
Translates to: SWVRNRDQLTAYHPTPGLTWSCC*HPCARR
Trigger: CCTTCGTGCGCATGGATGTCAGCAGCAACTCCAAGT...GAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTCTGTTCCTTACCCATGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp ATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCACTTGGAGTTGCTGCTaGCATCCATGCGCACGAAGG +
Preference number: 4 (lower is better)
Translates to: ITKTFQAGPQRTCVESASTWSCC*HPCARR
Trigger: CCTTCGTGCGCATGGATGTCAGCAGCAACTCCAAGT...GGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp TTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTTGGGACAACCTTTGAACTGCAGCCAGTaGGACCCAATGTCACCTCTC +
Preference number: 4 (lower is better)
Translates to: FQAGPQRTCVESASLGQPLNCSQ*DPMSPL
Trigger: GAGAGGTGACATTGGGTCTCACTGGCTGCAGTTCAA...AGGTTGTCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp CCAATGAAGGAGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGTCTTCTGTCAAGAGCTTaGACTGCAGCCAGTGAGACC +
Preference number: 4 (lower is better)
Translates to: PMKEQLPRGPIARSFVMGLLSRA*TAASET
Trigger: GGTCTCACTGGCTGCAGTTCAAGCTCTTGACAGAAG...ACCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCTCCTTCATTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp AGGGTAACTGATGAGCACTTCCTGGGCACGGGTCAGAGAGCGCGTCATACACCGACCTTCACCAGGACGTaGGAGTGGTCTATCTTCAAC +
Preference number: 4 (lower is better)
Translates to: RVTDEHFLGTGQRARHTPTFTRT*EWSIFN
Trigger: GTTGAAGATAGACCACTCTCACGTCCTGGTGAAGGT...CGGTGTATGACGCGCTCTCTGACCCGTGCCCAGGAAGTGCTCATCAGTTACCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp CCCCTGGCTGTCACTGGCCTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCTGGACAAGCCATTCCTaGTGTTTTCTAATAGGCATC +
Preference number: 4 (lower is better)
Translates to: PLAVTGLHSMSSRHQPTPWTSHS*CFLIGI
Trigger: GATGCCTATTAGAAAACATCAGGAATGGCTTGTCCA...GGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAGTGACAGCCAGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp CAACTCCCAGGTGCCGGCCACAGCCTTACTGTCACAGCCTTACTGTCGTTACAGTGCGCAGCAGCTCAATaGGCTGCTGGATGTTTTGGT +
Preference number: 4 (lower is better)
Translates to: QLPGAGHSLTVTALLSLQCAAAQ*AAGCFG
Trigger: ACCAAAACATCCAGCAGCTCATTGAGCTGCTGCGCA...CTGTAACGACAGTAAGGCTGTGACAGTAAGGCTGTGGCCGGCACCTGGGAGTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp GCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACTCGGCGTTGAGTGCCTaGAGCTTCCTGAGGAAATGC +
Preference number: 4 (lower is better)
Translates to: ASHFAAHHQNLPGWSTEDSALSA*SFLRKC
Trigger: GCATTTCCTCAGGAAGCTGCAGGCACTCAACGCCGA...GTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp TCATGGGTAAGGAACAGAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCTCGGCGTTGAGTGCCTaGAGCTTCCTGAGGAAATGC +
Preference number: 4 (lower is better)
Translates to: SWVRNRDQLTAYHPTPGLSALSA*SFLRKC
Trigger: GCATTTCCTCAGGAAGCTGCAGGCACTCAACGCCGA...GAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTCTGTTCCTTACCCATGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp CACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGCTTCGGCGTTGAGTaGCTGCAGCTTCCTGAGGAA +
Preference number: 4 (lower is better)
Translates to: HFAAHHQNLPGWSTEDLCGFGVE*LQLPEE
Trigger: TTCCTCAGGAAGCTGCAGGCACTCAACGCCGAAGCC...ACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp AAGAAAGGGTTCCAGATCAGAGAGCGCACAAGTACCCTGGAACCAAGGGCACCTCATCTCAGGAAGTACTaGCTCTCACTCGGGGAGGGG +
Preference number: 4 (lower is better)
Translates to: KKGFQIRERTSTLEPRAPHLRKY*LSLGEG
Trigger: CCCCTCCCCGAGTGAGAGGCAGTACTTCCTGAGATG...AGGTGCCCTTGGTTCCAGGGTACTTGTGCGCTCTCTGATCTGGAACCCTTTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp CAGAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATGGCGGATCCAGGAGCTaGCTCCTGTCTCTTGGTTTG +
Preference number: 4 (lower is better)
Translates to: QRSTYCLPPHPGPRVILNGGSRS*LLSLGL
Trigger: CAAACCAAGAGACAGGAGGCAGCTCCTGGATCCGCC...ATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GCCAATGAAGGAGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGTGCTTCTCTCCACTGTaGGGAAGTCATTGTCCTGAG +
Preference number: 4 (lower is better)
Translates to: ANEGAATQRADCQELCHGCFSPL*GSHCPE
Trigger: CTCAGGACAATGACTTCCCCACAGTGGAGAGAAGCA...CCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCTCCTTCATTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CAGAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATATCTGCAGGGAGTCCTaGAGGGTGAGCTTCTGTGCC +
Preference number: 4 (lower is better)
Translates to: QRSTYCLPPHPGPRVILNICRES*RVSFCA
Trigger: GGCACAGAAGCTCACCCTCCAGGACTCCCTGCAGAT...ATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GGCAGATCAGAGATCCTGCAAAGTTTCAGGATTGCTTTTCTCATCCGCACACGGTGCAGGCCAGGCCTCTaGAGGCACGTCCAGCACCAT +
Preference number: 4 (lower is better)
Translates to: GRSEILQSFRIAFLIRTRCRPGL*RHVQHH
Trigger: ATGGTGCTGGACGTGCCTCCAGAGGCCTGGCCTGCA...CCGTGTGCGGATGAGAAAAGCAATCCTGAAACTTTGCAGGATCTCTGATCTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GGTAAGGAACAGAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTCAGGCGTATCAGGCATaGGCAGCTCTGAGAAAGAGT +
Preference number: 4 (lower is better)
Translates to: GKEQRSTYCLPPHPGPRVQAYQA*AALRKS
Trigger: ACTCTTTCTCAGAGCTGCCCATGCCTGATACGCCTG...AACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTCTGTTCCTTACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp AGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGTAAGGAACAGACAAACGTGGGCACCCTaGACAGGACCACACTGTCTT +
Preference number: 4 (lower is better)
Translates to: SSYPEGRLPGALSWVRNRQTWAP*TGPHCL
Trigger: AAGACAGTGTGGTCCTGTCCAGGGTGCCCACGTTTG...TCTGTTCCTTACCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CCTCTTCAGGCAGAGGCTGCTGTCCTAAGCATGAGGACAATGAAGGCGTGGAGAACGGCATTGAGCAGCTaGGACTTGGAGTTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: PLQAEAAVLSMRTMKAWRTALSS*DLELLL
Trigger: CAGCAGCAACTCCAAGTCCCAGCTGCTCAATGCCGT...TCTCCACGCCTTCATTGTCCTCATGCTTAGGACAGCAGCCTCTGCCTGAAGAGG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGACGGCATTGAGCAGCTaGGACTTGGAGTTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: LCCTSPKPSRLVHRGPVWTALSS*DLELLL
Trigger: CAGCAGCAACTCCAAGTCCCAGCTGCTCAATGCCGT...CCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp TTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGACGGCATTGAGCAGCTaGGACTTGGAGTTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: LLHITKTFQAGPQRTCVETALSS*DLELLL
Trigger: CAGCAGCAACTCCAAGTCCCAGCTGCTCAATGCCGT...CTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp AAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTTGGGAGGGACCCACTGGAGCTaGCAGAACTCTCTTTCAGCT +
Preference number: 4 (lower is better)
Translates to: KTFQAGPQRTCVESASLGGTHWS*QNSLSA
Trigger: AGCTGAAAGAGAGTTCTGCCAGCTCCAGTGGGTCCC...TCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACGGGACCCACTGGAGCTaGCAGAACTCTCTTTCAGCT +
Preference number: 4 (lower is better)
Translates to: ASHFAAHHQNLPGWSTEDGTHWS*QNSLSA
Trigger: AGCTGAAAGAGAGTTCTGCCAGCTCCAGTGGGTCCC...GTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp TTTGCTGAATCTAGTAAAAGGACAAGACACAGGAGAGGTTCTCAGGCCATGGCCCTCTGGAGGCTGTCTTaGCCGTGGCTGGCCAAGCCG +
Preference number: 4 (lower is better)
Translates to: FAESSKRTRHRRGSQAMALWRLS*PWLAKP
Trigger: CGGCTTGGCCAGCCACGGCCAAGACAGCCTCCAGAG...GGCCATGGCCTGAGAACCTCTCCTGTGTCTTGTCCTTTTACTAGATTCAGCAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATGGTGGCCCCATTAGCAGTGTaGCCAAGGAAGCCTCCAGTT +
Preference number: 4 (lower is better)
Translates to: DQLTAYHPTPGLGLFSMVAPLAV*PRKPPV
Trigger: AACTGGAGGCTTCCTTGGCCACACTGCTAATGGGGC...CACCATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp ATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCGCCCCATTAGCAGTGTaGCCAAGGAAGCCTCCAGTT +
Preference number: 4 (lower is better)
Translates to: ITKTFQAGPQRTCVESASAPLAV*PRKPPV
Trigger: AACTGGAGGCTTCCTTGGCCACACTGCTAATGGGGC...GGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GGTAAGGAACAGAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTCTCTTGGTTTGGGGCTaGGAACAGGCAGGTCATGAA +
Preference number: 4 (lower is better)
Translates to: GKEQRSTYCLPPHPGPRVLLVWG*EQAGHE
Trigger: TTCATGACCTGCCTGTTCCCAGCCCCAAACCAAGAG...AACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTCTGTTCCTTACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp TTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTTGGGACAACCTCTCTTGGTTTGGGGCTaGGAACAGGCAGGTCATGAA +
Preference number: 4 (lower is better)
Translates to: FQAGPQRTCVESASLGQPLLVWG*EQAGHE
Trigger: TTCATGACCTGCCTGTTCCCAGCCCCAAACCAAGAG...AGGTTGTCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCCTCTTGGTTTGGGGCTaGGAACAGGCAGGTCATGAA +
Preference number: 4 (lower is better)
Translates to: AAHHQNLPGWSTEDLCGVLLVWG*EQAGHE
Trigger: TTCATGACCTGCCTGTTCCCAGCCCCAAACCAAGAG...GACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp AGCAACTCACAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGCTGCCTCCTGTCTCTTaGTTTGGGGCTGGGAACAGG +
Preference number: 4 (lower is better)
Translates to: SNSQSRGRQETHVTMCRELPPVS*FGAGNR
Trigger: CCTGTTCCCAGCCCCAAACCAAGAGACAGGAGGCAG...CTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTGTGAGTTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTCTGCCTCCTGTCTCTTaGTTTGGGGCTGGGAACAGG +
Preference number: 4 (lower is better)
Translates to: HFAAHHQNLPGWSTEDLCLPPVS*FGAGNR
Trigger: CCTGTTCCCAGCCCCAAACCAAGAGACAGGAGGCAG...ACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp AAGAAAGGGTTCCAGATCAGAGAGCGCACAAGTACCCTGGAACCAAGGGCACCTTCCATGCCACAAGGCTaGGATGTGCCAGACGTGCTG +
Preference number: 4 (lower is better)
Translates to: KKGFQIRERTSTLEPRAPSMPQG*DVPDVL
Trigger: CAGCACGTCTGGCACATCCCAGCCTTGTGGCATGGA...AGGTGCCCTTGGTTCCAGGGTACTTGTGCGCTCTCTGATCTGGAACCCTTTCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp CAGTGCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAAGGTCCTTGGGAACCTaGGGAGCCCAGTTCTTCATG +
Preference number: 4 (lower is better)
Translates to: QCLTLCCTSPKPSRLVHRRSLGT*GAQFFM
Trigger: CATGAAGAACTGGGCTCCTCAGGTTCCCAAGGACCT...TCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGCACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp CAGAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATAGGTCCTTGGGAACCTaGGGAGCCCAGTTCTTCATG +
Preference number: 4 (lower is better)
Translates to: QRSTYCLPPHPGPRVILNRSLGT*GAQFFM
Trigger: CATGAAGAACTGGGCTCCTCAGGTTCCCAAGGACCT...ATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp AAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTTGGGAAGGCATGGGCAGCTCTaGGAAAGAGTAGATGTCAGC +
Preference number: 4 (lower is better)
Translates to: KTFQAGPQRTCVESASLGRHGQL*ERVDVS
Trigger: GCTGACATCTACTCTTTCTCAGAGCTGCCCATGCCT...TCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp AGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGTAAGGAACAGAAGGCATGGGCAGCTCTaGGAAAGAGTAGATGTCAGC +
Preference number: 4 (lower is better)
Translates to: SSYPEGRLPGALSWVRNRRHGQL*ERVDVS
Trigger: GCTGACATCTACTCTTTCTCAGAGCTGCCCATGCCT...TCTGTTCCTTACCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp AGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGTAAGGAACAGAAGTGGGAGTGCAAACTaGCAGAGGGACATCTTCAGC +
Preference number: 4 (lower is better)
Translates to: SSYPEGRLPGALSWVRNRSGSAN*QRDIFS
Trigger: GCTGAAGATGTCCCTCTGTCAGTTTGCACTCCCACT...TCTGTTCCTTACCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp CACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTACTTGGAGTTGCTGCTaGCATCCATGCGCACGAAGG +
Preference number: 4 (lower is better)
Translates to: HFAAHHQNLPGWSTEDLCTWSCC*HPCARR
Trigger: CCTTCGTGCGCATGGATGTCAGCAGCAACTCCAAGT...ACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp TTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTTGAACTGCAGCCAGTaGGACCCAATGTCACCTCTC +
Preference number: 4 (lower is better)
Translates to: LLHITKTFQAGPQRTCVELNCSQ*DPMSPL
Trigger: GAGAGGTGACATTGGGTCTCACTGGCTGCAGTTCAA...CTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp GCAGTGCCATGGCAGTGCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGTTGAACTGCAGCCAGTaGGACCCAATGTCACCTCTC +
Preference number: 4 (lower is better)
Translates to: AVPWQCLTLCCTSPKPSRLNCSQ*DPMSPL
Trigger: GAGAGGTGACATTGGGTCTCACTGGCTGCAGTTCAA...CCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGCACTGCCATGGCACTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp GATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATGGTGCTTCTGTCAAGAGCTTaGACTGCAGCCAGTGAGACC +
Preference number: 4 (lower is better)
Translates to: DQLTAYHPTPGLGLFSMVLLSRA*TAASET
Trigger: GGTCTCACTGGCTGCAGTTCAAGCTCTTGACAGAAG...CACCATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp ATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCCTTCTGTCAAGAGCTTaGACTGCAGCCAGTGAGACC +
Preference number: 4 (lower is better)
Translates to: ITKTFQAGPQRTCVESASLLSRA*TAASET
Trigger: GGTCTCACTGGCTGCAGTTCAAGCTCTTGACAGAAG...GGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp GATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATGGTGCGGTCCTTTGCCTTCTaGCACTCCTCAAAGTCCTCA +
Preference number: 4 (lower is better)
Translates to: DQLTAYHPTPGLGLFSMVRSFAF*HSSKSS
Trigger: TGAGGACTTTGAGGAGTGTCAGAAGGCAAAGGACCG...CACCATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp AGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGTAAGGAACAGACGGTCCTTTGCCTTCTaGCACTCCTCAAAGTCCTCA +
Preference number: 4 (lower is better)
Translates to: SSYPEGRLPGALSWVRNRRSFAF*HSSKSS
Trigger: TGAGGACTTTGAGGAGTGTCAGAAGGCAAAGGACCG...TCTGTTCCTTACCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp CAACTCCCAGGTGCCGGCCACAGCCTTACTGTCACAGCCTTACTGTCGTTACAGAGCCTTAGAAACGCATaGAGAACAGCTGGTGGGATG +
Preference number: 4 (lower is better)
Translates to: QLPGAGHSLTVTALLSLQSLRNA*RTAGGM
Trigger: CATCCCACCAGCTGTTCTTCATGCGTTTCTAAGGCT...CTGTAACGACAGTAAGGCTGTGACAGTAAGGCTGTGGCCGGCACCTGGGAGTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp TTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTGCGCAGCAGCTCAATaGGCTGCTGGATGTTTTGGT +
Preference number: 4 (lower is better)
Translates to: LLHITKTFQAGPQRTCVECAAAQ*AAGCFG
Trigger: ACCAAAACATCCAGCAGCTCATTGAGCTGCTGCGCA...CTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp AAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTTGGGATGCGCAGCAGCTCAATaGGCTGCTGGATGTTTTGGT +
Preference number: 4 (lower is better)
Translates to: KTFQAGPQRTCVESASLGCAAAQ*AAGCFG
Trigger: ACCAAAACATCCAGCAGCTCATTGAGCTGCTGCGCA...TCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp AGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGTAAGGAACAGACTGTCAAAACTGATCTaGAGGGAGTCCTGGAGGGTG +
Preference number: 4 (lower is better)
Translates to: SSYPEGRLPGALSWVRNRLSKLI*RESWRV
Trigger: CACCCTCCAGGACTCCCTGCAGATCAGTTTTGACAG...TCTGTTCCTTACCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp CATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTGTCAAAACTGATCTaGAGGGAGTCCTGGAGGGTG +
Preference number: 4 (lower is better)
Translates to: HHQNLPGWSTEDLCGVCFLSKLI*RESWRV
Trigger: CACCCTCCAGGACTCCCTGCAGATCAGTTTTGACAG...GAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp TCATGGGTAAGGAACAGAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCCTGTCAAAACTGATCTaGAGGGAGTCCTGGAGGGTG +
Preference number: 4 (lower is better)
Translates to: SWVRNRDQLTAYHPTPGLLSKLI*RESWRV
Trigger: CACCCTCCAGGACTCCCTGCAGATCAGTTTTGACAG...GAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTCTGTTCCTTACCCATGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp AAGAAAGGGTTCCAGATCAGAGAGCGCACAAGTACCCTGGAACCAAGGGCACCTTCGGCGTTGAGTGCCTaGAGCTTCCTGAGGAAATGC +
Preference number: 4 (lower is better)
Translates to: KKGFQIRERTSTLEPRAPSALSA*SFLRKC
Trigger: GCATTTCCTCAGGAAGCTGCAGGCACTCAACGCCGA...AGGTGCCCTTGGTTCCAGGGTACTTGTGCGCTCTCTGATCTGGAACCCTTTCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp GCCAATGAAGGAGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGTTCAGCAGGACTTCCTaGTGCAGAAAGGTGTCTGAA +
Preference number: 4 (lower is better)
Translates to: ANEGAATQRADCQELCHGFSRTS*CRKVSE
Trigger: TTCAGACACCTTTCTGCAGCAGGAAGTCCTGCTGAA...CCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCTCCTTCATTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp CAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGGTGCTGCGGAGCAGCTCAATGAGCTaGTGGATGTTTTGGTTCTGG +
Preference number: 4 (lower is better)
Translates to: QSRGRQETHVTMCREVLRSSSMS*WMFWFW
Trigger: CCAGAACCAAAACATCCAGCAGCTCATTGAGCTGCT...CCGCAGCACCTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp TGGGAGACCCAGGGAGCCAGGCCAGTAGAGGAGTGCAGTGGGCCCTTGGTTCAATTCCAAATCTGCAATTaGCACAGATGTTTGGCTGTC +
Preference number: 4 (lower is better)
Translates to: WETQGARPVEECSGPLVQFQICN*HRCLAV
Trigger: GACAGCCAAACATCTGTGGCAATTGCAGATTTGGAA...TTGAACCAAGGGCCCACTGCACTCCTCTACTGGCCTGGCTCCCTGGGTCTCCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093362.12
CDS-3UTR CCA 90 bp CAACTCCCAGGTGCCGGCCACAGCCTTACTGTCACAGCCTTACTGTCGTTACAGTGCTTCTCTCCACTGTaGGGAAGTCATTGTCCTGAG +
Preference number: 4 (lower is better)
Translates to: QLPGAGHSLTVTALLSLQCFSPL*GSHCPE
Trigger: CTCAGGACAATGACTTCCCCACAGTGGAGAGAAGCA...CTGTAACGACAGTAAGGCTGTGACAGTAAGGCTGTGGCCGGCACCTGGGAGTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATGGCAGGCGTATCAGGCATaGGCAGCTCTGAGAAAGAGT +
Preference number: 4 (lower is better)
Translates to: EINLLLTTPPRASGYSQWQAYQA*AALRKS
Trigger: ACTCTTTCTCAGAGCTGCCCATGCCTGATACGCCTG...CCATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GCAGTGCCATGGCAGTGCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGCAGGCGTATCAGGCATaGGCAGCTCTGAGAAAGAGT +
Preference number: 4 (lower is better)
Translates to: AVPWQCLTLCCTSPKPSRQAYQA*AALRKS
Trigger: ACTCTTTCTCAGAGCTGCCCATGCCTGATACGCCTG...CCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGCACTGCCATGGCACTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATGGTGCAGGCGTATCAGGCATaGGCAGCTCTGAGAAAGAGT +
Preference number: 4 (lower is better)
Translates to: DQLTAYHPTPGLGLFSMVQAYQA*AALRKS
Trigger: ACTCTTTCTCAGAGCTGCCCATGCCTGATACGCCTG...CACCATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTACGGCATTGAGCAGCTaGGACTTGGAGTTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: HFAAHHQNLPGWSTEDLCTALSS*DLELLL
Trigger: CAGCAGCAACTCCAAGTCCCAGCTGCTCAATGCCGT...ACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCAGGTGCCGGCCACAGCCTTGGTTGACTCCTTCATaGAGTACAGCAGTTTGTATT +
Preference number: 4 (lower is better)
Translates to: LHSMSSRHQPTPRCRPQPWLTPS*STAVCI
Trigger: AATACAAACTGCTGTACTCCATGAAGGAGTCAACCA...AGGCTGTGGCCGGCACCTGGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGGTGCTGCGGTACAGCTCCTCCCAGTaGCAAATTTCAGGCCAAACA +
Preference number: 4 (lower is better)
Translates to: QSRGRQETHVTMCREVLRYSSSQ*QISGQT
Trigger: TGTTTGGCCTGAAATTTGCCACTGGGAGGAGCTGTA...CCGCAGCACCTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp GAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATGGGGGAAGTCATTGTCCTaGGCCTCGTTTGTACCATCT +
Preference number: 4 (lower is better)
Translates to: EINLLLTTPPRASGYSQWGKSLS*ASFVPS
Trigger: AGATGGTACAAACGAGGCTCAGGACAATGACTTCCC...CCATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp AGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGTAAGGAACAGAGGGAAGTCATTGTCCTaGGCCTCGTTTGTACCATCT +
Preference number: 4 (lower is better)
Translates to: SSYPEGRLPGALSWVRNRGKSLS*ASFVPS
Trigger: AGATGGTACAAACGAGGCTCAGGACAATGACTTCCC...TCTGTTCCTTACCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp TTTGCTGAATCTAGTAAAAGGACAAGACACAGGAGAGGTTCTCAGGCCATGGCCGGGAGTCCTGGAGGGTaGGCTTCTGTGCCTGGTATG +
Preference number: 4 (lower is better)
Translates to: FAESSKRTRHRRGSQAMAGSPGG*ASVPGM
Trigger: CATACCAGGCACAGAAGCTCACCCTCCAGGACTCCC...GGCCATGGCCTGAGAACCTCTCCTGTGTCTTGTCCTTTTACTAGATTCAGCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp AGCAACTCACAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGAGGCATGGGCAGCTCTaGGAAAGAGTAGATGTCAGC +
Preference number: 4 (lower is better)
Translates to: SNSQSRGRQETHVTMCRERHGQL*ERVDVS
Trigger: GCTGACATCTACTCTTTCTCAGAGCTGCCCATGCCT...CTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTGTGAGTTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp CAGAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATAGTGGGAGTGCAAACTaGCAGAGGGACATCTTCAGC +
Preference number: 4 (lower is better)
Translates to: QRSTYCLPPHPGPRVILNSGSAN*QRDIFS
Trigger: GCTGAAGATGTCCCTCTGTCAGTTTGCACTCCCACT...ATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp CACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTAGTGGGAGTGCAAACTaGCAGAGGGACATCTTCAGC +
Preference number: 4 (lower is better)
Translates to: HFAAHHQNLPGWSTEDLCSGSAN*QRDIFS
Trigger: GCTGAAGATGTCCCTCTGTCAGTTTGCACTCCCACT...ACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp AAGAAAGGGTTCCAGATCAGAGAGCGCACAAGTACCCTGGAACCAAGGGCACCTTTGAACTGCAGCCAGTaGGACCCAATGTCACCTCTC +
Preference number: 4 (lower is better)
Translates to: KKGFQIRERTSTLEPRAPLNCSQ*DPMSPL
Trigger: GAGAGGTGACATTGGGTCTCACTGGCTGCAGTTCAA...AGGTGCCCTTGGTTCCAGGGTACTTGTGCGCTCTCTGATCTGGAACCCTTTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp CACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTCTTCTGTCAAGAGCTTaGACTGCAGCCAGTGAGACC +
Preference number: 4 (lower is better)
Translates to: HFAAHHQNLPGWSTEDLCLLSRA*TAASET
Trigger: GGTCTCACTGGCTGCAGTTCAAGCTCTTGACAGAAG...ACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp TTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTTGGGACAACCTGGTAGGGACTCAGGATaGAGTAGTACTTTGTGGTTG +
Preference number: 4 (lower is better)
Translates to: FQAGPQRTCVESASLGQPGRDSG*SSTLWL
Trigger: CAACCACAAAGTACTACTTCATCCTGAGTCCCTACC...AGGTTGTCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp GAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATGGACCTTCACCAGGACGTaGGAGTGGTCTATCTTCAAC +
Preference number: 4 (lower is better)
Translates to: EINLLLTTPPRASGYSQWTFTRT*EWSIFN
Trigger: GTTGAAGATAGACCACTCTCACGTCCTGGTGAAGGT...CCATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp GCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACACCTTCACCAGGACGTaGGAGTGGTCTATCTTCAAC +
Preference number: 4 (lower is better)
Translates to: ASHFAAHHQNLPGWSTEDTFTRT*EWSIFN
Trigger: GTTGAAGATAGACCACTCTCACGTCCTGGTGAAGGT...GTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp AACTCACAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGGTGCGGTCCTTTGCCTTCTaGCACTCCTCAAAGTCCTCA +
Preference number: 4 (lower is better)
Translates to: NSQSRGRQETHVTMCREVRSFAF*HSSKSS
Trigger: TGAGGACTTTGAGGAGTGTCAGAAGGCAAAGGACCG...CACCTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTGTGAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp GCAGTGCCATGGCAGTGCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGAGCCTTAGAAACGCATaGAGAACAGCTGGTGGGATG +
Preference number: 4 (lower is better)
Translates to: AVPWQCLTLCCTSPKPSRSLRNA*RTAGGM
Trigger: CATCCCACCAGCTGTTCTTCATGCGTTTCTAAGGCT...CCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGCACTGCCATGGCACTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp CAGAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATCTGTCAAAACTGATCTaGAGGGAGTCCTGGAGGGTG +
Preference number: 4 (lower is better)
Translates to: QRSTYCLPPHPGPRVILNLSKLI*RESWRV
Trigger: CACCCTCCAGGACTCCCTGCAGATCAGTTTTGACAG...ATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp CAACTCCCAGGTGCCGGCCACAGCCTTACTGTCACAGCCTTACTGTCGTTACAGTTCAGCAGGACTTCCTaGTGCAGAAAGGTGTCTGAA +
Preference number: 4 (lower is better)
Translates to: QLPGAGHSLTVTALLSLQFSRTS*CRKVSE
Trigger: TTCAGACACCTTTCTGCAGCAGGAAGTCCTGCTGAA...CTGTAACGACAGTAAGGCTGTGACAGTAAGGCTGTGGCCGGCACCTGGGAGTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp CAGTGCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAAAATTGAGGTCCCGATaGCAGAAGCAGTCCCACTGG +
Preference number: 4 (lower is better)
Translates to: QCLTLCCTSPKPSRLVHRKLRSR*QKQSHW
Trigger: CCAGTGGGACTGCTTCTGGCATCGGGACCTCAATTT...TCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGCACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp GGCAGATCAGAGATCCTGCAAAGTTTCAGGATTGCTTTTCTCATCCGCACACGGGGCGGATCCAGGAGCTaGCTCCTGTCTCTTGGTTTG +
Preference number: 4 (lower is better)
Translates to: GRSEILQSFRIAFLIRTRGGSRS*LLSLGL
Trigger: CAAACCAAGAGACAGGAGGCAGCTCCTGGATCCGCC...CCGTGTGCGGATGAGAAAAGCAATCCTGAAACTTTGCAGGATCTCTGATCTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp CCAATGAAGGAGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGTAGCAGCTCAATGAGCTaGTGGATGTTTTGGTTCTGG +
Preference number: 4 (lower is better)
Translates to: PMKEQLPRGPIARSFVMGSSSMS*WMFWFW
Trigger: CCAGAACCAAAACATCCAGCAGCTCATTGAGCTGCT...ACCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCTCCTTCATTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp TTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTGCTTCTCTCCACTGTaGGGAAGTCATTGTCCTGAG +
Preference number: 4 (lower is better)
Translates to: LLHITKTFQAGPQRTCVECFSPL*GSHCPE
Trigger: CTCAGGACAATGACTTCCCCACAGTGGAGAGAAGCA...CTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GCAGTGCCATGGCAGTGCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGATCGGGCAACACAAGTaGGAGTGCAAACTGACAGAG +
Preference number: 4 (lower is better)
Translates to: AVPWQCLTLCCTSPKPSRIGQHK*ECKLTE
Trigger: CTCTGTCAGTTTGCACTCCCACTTGTGTTGCCCGAT...CCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGCACTGCCATGGCACTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGATCGGGCAACACAAGTaGGAGTGCAAACTGACAGAG +
Preference number: 4 (lower is better)
Translates to: LCCTSPKPSRLVHRGPVWIGQHK*ECKLTE
Trigger: CTCTGTCAGTTTGCACTCCCACTTGTGTTGCCCGAT...CCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATGGATCGGGCAACACAAGTaGGAGTGCAAACTGACAGAG +
Preference number: 4 (lower is better)
Translates to: EINLLLTTPPRASGYSQWIGQHK*ECKLTE
Trigger: CTCTGTCAGTTTGCACTCCCACTTGTGTTGCCCGAT...CCATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATGGTGAGTTCAGAAAGGCCATaGGCTCCGGGAAAACATCCA +
Preference number: 4 (lower is better)
Translates to: DQLTAYHPTPGLGLFSMVSSERP*APGKHP
Trigger: TGGATGTTTTCCCGGAGCCCATGGCCTTTCTGAACT...CACCATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CCTCTTCAGGCAGAGGCTGCTGTCCTAAGCATGAGGACAATGAAGGCGTGGAGAAGTTCAGAAAGGCCATaGGCTCCGGGAAAACATCCA +
Preference number: 4 (lower is better)
Translates to: PLQAEAAVLSMRTMKAWRSSERP*APGKHP
Trigger: TGGATGTTTTCCCGGAGCCCATGGCCTTTCTGAACT...TCTCCACGCCTTCATTGTCCTCATGCTTAGGACAGCAGCCTCTGCCTGAAGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTTCAGAAAGGCCATaGGCTCCGGGAAAACATCCA +
Preference number: 4 (lower is better)
Translates to: LCCTSPKPSRLVHRGPVWSSERP*APGKHP
Trigger: TGGATGTTTTCCCGGAGCCCATGGCCTTTCTGAACT...CCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CAACTCCCAGGTGCCGGCCACAGCCTTACTGTCACAGCCTTACTGTCGTTACAGCGCATGAAGAACAGCTaGTGGGATGTCCTTTGTTTC +
Preference number: 4 (lower is better)
Translates to: QLPGAGHSLTVTALLSLQRMKNS*WDVLCF
Trigger: GAAACAAAGGACATCCCACCAGCTGTTCTTCATGCG...CTGTAACGACAGTAAGGCTGTGACAGTAAGGCTGTGGCCGGCACCTGGGAGTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCCGCATGAAGAACAGCTaGTGGGATGTCCTTTGTTTC +
Preference number: 4 (lower is better)
Translates to: AAHHQNLPGWSTEDLCGVRMKNS*WDVLCF
Trigger: GAAACAAAGGACATCCCACCAGCTGTTCTTCATGCG...GACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp TTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTTGGGACAACCTAGCTGCTGGATGTTTTaGTTCTGGTTGGACAAGCCA +
Preference number: 4 (lower is better)
Translates to: FQAGPQRTCVESASLGQPSCWMF*FWLDKP
Trigger: TGGCTTGTCCAACCAGAACCAAAACATCCAGCAGCT...AGGTTGTCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CAACTCCCAGGTGCCGGCCACAGCCTTACTGTCACAGCCTTACTGTCGTTACAGAGCTGCTGGATGTTTTaGTTCTGGTTGGACAAGCCA +
Preference number: 4 (lower is better)
Translates to: QLPGAGHSLTVTALLSLQSCWMF*FWLDKP
Trigger: TGGCTTGTCCAACCAGAACCAAAACATCCAGCAGCT...CTGTAACGACAGTAAGGCTGTGACAGTAAGGCTGTGGCCGGCACCTGGGAGTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GCCAATGAAGGAGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGAGCTCAATGAGCTGCTaGATGTTTTGGTTCTGGTTG +
Preference number: 4 (lower is better)
Translates to: ANEGAATQRADCQELCHGSSMSC*MFWFWL
Trigger: CAACCAGAACCAAAACATCCAGCAGCTCATTGAGCT...CCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCTCCTTCATTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR CAA 72 bp AGGAGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTaGTCATGGGTAAGGAACAGAGATCAACTTACTGCT +
Preference number: 4 (lower is better)
Translates to: RSSYPEGRLPGA*SWVRNRDQLTA
Trigger: AGCAGTAAGTTGATCTCTGTTCCTTACCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp GTCCCTGACCAAGTAACTGTCTCAAACAGTGGCTCCATTGCTGCACTTTTCAGACTGCAGAAAGGTGTCTaGAGACAGCAGGAGGGCGCA +
Preference number: 4 (lower is better)
Translates to: VPDQVTVSNSGSIAALFRLQKGV*RQQEGA
Trigger: TGCGCCCTCCTGCTGTCTTCAGACACCTTTCTGCAG...TCTGAAAAGTGCAGCAATGGAGCCACTGTTTGAGACAGTTACTTGGTCAGGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp AAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTTGGGAGGTAGGGACTCAGGATaGAGTAGTACTTTGTGGTTG +
Preference number: 4 (lower is better)
Translates to: KTFQAGPQRTCVESASLGGRDSG*SSTLWL
Trigger: CAACCACAAAGTACTACTTCATCCTGAGTCCCTACC...TCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp CATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCGGTAGGGACTCAGGATaGAGTAGTACTTTGTGGTTG +
Preference number: 4 (lower is better)
Translates to: HHQNLPGWSTEDLCGVCFGRDSG*SSTLWL
Trigger: CAACCACAAAGTACTACTTCATCCTGAGTCCCTACC...GAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp TTTGCTGAATCTAGTAAAAGGACAAGACACAGGAGAGGTTCTCAGGCCATGGCCTCACAGCCCAGGTCCTaGCTGAAGCCCTCAGCTACA +
Preference number: 4 (lower is better)
Translates to: FAESSKRTRHRRGSQAMASQPRS*LKPSAT
Trigger: TGTAGCTGAGGGCTTCAGTCAGGACCTGGGCTGTGA...GGCCATGGCCTGAGAACCTCTCCTGTGTCTTGTCCTTTTACTAGATTCAGCAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp CACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTAGCCTTAGAAACGCATaGAGAACAGCTGGTGGGATG +
Preference number: 4 (lower is better)
Translates to: HFAAHHQNLPGWSTEDLCSLRNA*RTAGGM
Trigger: CATCCCACCAGCTGTTCTTCATGCGTTTCTAAGGCT...ACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp CAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGGTGCTGCGGTGGACAAGCCATTCCTaGTGTTTTCTAATAGGCATC +
Preference number: 4 (lower is better)
Translates to: QSRGRQETHVTMCREVLRWTSHS*CFLIGI
Trigger: GATGCCTATTAGAAAACATCAGGAATGGCTTGTCCA...CCGCAGCACCTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp AGGGTAACTGATGAGCACTTCCTGGGCACGGGTCAGAGAGCGCGTCATACACCGTGGACAAGCCATTCCTaGTGTTTTCTAATAGGCATC +
Preference number: 4 (lower is better)
Translates to: RVTDEHFLGTGQRARHTPWTSHS*CFLIGI
Trigger: GATGCCTATTAGAAAACATCAGGAATGGCTTGTCCA...CGGTGTATGACGCGCTCTCTGACCCGTGCCCAGGAAGTGCTCATCAGTTACCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp CCTGGAACCAAGGGCACCTTTGCTGAATCTAGTAAAAGGACAAGACACAGGAGAGGCTTCGGCGTTGAGTaGCTGCAGCTTCCTGAGGAA +
Preference number: 4 (lower is better)
Translates to: PGTKGTFAESSKRTRHRRGFGVE*LQLPEE
Trigger: TTCCTCAGGAAGCTGCAGGCACTCAACGCCGAAGCC...TCTCCTGTGTCTTGTCCTTTTACTAGATTCAGCAAAGGTGCCCTTGGTTCCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp ATCCTCCATCTCTCAAGTCCTGATACCACAGCTATGCACCACCATTCCCAGTATGGCTTCGGCGTTGAGTaGCTGCAGCTTCCTGAGGAA +
Preference number: 4 (lower is better)
Translates to: ILHLSSPDTTAMHHHSQYGFGVE*LQLPEE
Trigger: TTCCTCAGGAAGCTGCAGGCACTCAACGCCGAAGCC...ATACTGGGAATGGTGGTGCATAGCTGTGGTATCAGGACTTGAGAGATGGAGGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp TCATGGGTAAGGAACAGAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCTTCAGCAGGACTTCCTaGTGCAGAAAGGTGTCTGAA +
Preference number: 4 (lower is better)
Translates to: SWVRNRDQLTAYHPTPGLFSRTS*CRKVSE
Trigger: TTCAGACACCTTTCTGCAGCAGGAAGTCCTGCTGAA...GAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTCTGTTCCTTACCCATGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp GATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATGGTGCAACACAAGTGGGAGTaGAAACTGACAGAGGGACAT +
Preference number: 4 (lower is better)
Translates to: DQLTAYHPTPGLGLFSMVQHKWE*KLTEGH
Trigger: ATGTCCCTCTGTCAGTTTGCACTCCCACTTGTGTTG...CACCATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp AAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTTGGGACAACACAAGTGGGAGTaGAAACTGACAGAGGGACAT +
Preference number: 4 (lower is better)
Translates to: KTFQAGPQRTCVESASLGQHKWE*KLTEGH
Trigger: ATGTCCCTCTGTCAGTTTGCACTCCCACTTGTGTTG...TCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp CATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCAACACAAGTGGGAGTaGAAACTGACAGAGGGACAT +
Preference number: 4 (lower is better)
Translates to: HHQNLPGWSTEDLCGVCFQHKWE*KLTEGH
Trigger: ATGTCCCTCTGTCAGTTTGCACTCCCACTTGTGTTG...GAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp ATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCCAACACAAGTGGGAGTaGAAACTGACAGAGGGACAT +
Preference number: 4 (lower is better)
Translates to: ITKTFQAGPQRTCVESASQHKWE*KLTEGH
Trigger: ATGTCCCTCTGTCAGTTTGCACTCCCACTTGTGTTG...GGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp AGCAACTCACAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGCTCCATCCGGTCCTTTaGCTTCTGACACTCCTCAAA +
Preference number: 4 (lower is better)
Translates to: SNSQSRGRQETHVTMCRELHPVL*LLTLLK
Trigger: TTTGAGGAGTGTCAGAAGGCAAAGGACCGGATGGAG...CTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTGTGAGTTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp AACTCACAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGGTGCTCCATCCGGTCCTTTaGCTTCTGACACTCCTCAAA +
Preference number: 4 (lower is better)
Translates to: NSQSRGRQETHVTMCREVLHPVL*LLTLLK
Trigger: TTTGAGGAGTGTCAGAAGGCAAAGGACCGGATGGAG...CACCTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTGTGAGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp CAGTGCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGACTCCATCCGGTCCTTTaGCTTCTGACACTCCTCAAA +
Preference number: 4 (lower is better)
Translates to: QCLTLCCTSPKPSRLVHRLHPVL*LLTLLK
Trigger: TTTGAGGAGTGTCAGAAGGCAAAGGACCGGATGGAG...TCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGCACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp TTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGAGCAGCTCAATGAGCTaGTGGATGTTTTGGTTCTGG +
Preference number: 4 (lower is better)
Translates to: LLHITKTFQAGPQRTCVESSSMS*WMFWFW
Trigger: CCAGAACCAAAACATCCAGCAGCTCATTGAGCTGCT...CTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp ATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCAGCAGCTCAATGAGCTaGTGGATGTTTTGGTTCTGG +
Preference number: 4 (lower is better)
Translates to: ITKTFQAGPQRTCVESASSSSMS*WMFWFW
Trigger: CCAGAACCAAAACATCCAGCAGCTCATTGAGCTGCT...GGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CAGTGCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGATGCTTCTCTCCACTGTaGGGAAGTCATTGTCCTGAG +
Preference number: 4 (lower is better)
Translates to: QCLTLCCTSPKPSRLVHRCFSPL*GSHCPE
Trigger: CTCAGGACAATGACTTCCCCACAGTGGAGAGAAGCA...TCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGCACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp AACTCACAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGGTGATCGGGCAACACAAGTaGGAGTGCAAACTGACAGAG +
Preference number: 4 (lower is better)
Translates to: NSQSRGRQETHVTMCREVIGQHK*ECKLTE
Trigger: CTCTGTCAGTTTGCACTCCCACTTGTGTTGCCCGAT...CACCTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTGTGAGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTAGTTCAGAAAGGCCATaGGCTCCGGGAAAACATCCA +
Preference number: 4 (lower is better)
Translates to: HFAAHHQNLPGWSTEDLCSSERP*APGKHP
Trigger: TGGATGTTTTCCCGGAGCCCATGGCCTTTCTGAACT...ACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CAGTGCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAAGTTCAGAAAGGCCATaGGCTCCGGGAAAACATCCA +
Preference number: 4 (lower is better)
Translates to: QCLTLCCTSPKPSRLVHRSSERP*APGKHP
Trigger: TGGATGTTTTCCCGGAGCCCATGGCCTTTCTGAACT...TCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGCACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GCGTGGAGAGGCAGAACCTGCACACTACTGTCATTTGAGTATACATTCAACTCAGGCTCCGGGACCCACTaGAGCTGGCAGAACTCTCTT +
Preference number: 4 (lower is better)
Translates to: AWRGRTCTLLSFEYTFNSGSGTH*SWQNSL
Trigger: AAGAGAGTTCTGCCAGCTCCAGTGGGTCCCGGAGCC...TGAGTTGAATGTATACTCAAATGACAGTAGTGTGCAGGTTCTGCCTCTCCACGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp TTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTACAGCTCCTCCCAGTaGCAAATTTCAGGCCAAACA +
Preference number: 4 (lower is better)
Translates to: LLHITKTFQAGPQRTCVEYSSSQ*QISGQT
Trigger: TGTTTGGCCTGAAATTTGCCACTGGGAGGAGCTGTA...CTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGTACAGCTCCTCCCAGTaGCAAATTTCAGGCCAAACA +
Preference number: 4 (lower is better)
Translates to: LCCTSPKPSRLVHRGPVWYSSSQ*QISGQT
Trigger: TGTTTGGCCTGAAATTTGCCACTGGGAGGAGCTGTA...CCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATGGCGCATGAAGAACAGCTaGTGGGATGTCCTTTGTTTC +
Preference number: 4 (lower is better)
Translates to: EINLLLTTPPRASGYSQWRMKNS*WDVLCF
Trigger: GAAACAAAGGACATCCCACCAGCTGTTCTTCATGCG...CCATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGGTGCTGCGGTCTTCAATTCAAAAATaGCCTCACTGTAGCCCAAGC +
Preference number: 4 (lower is better)
Translates to: QSRGRQETHVTMCREVLRSSIQK*PHCSPS
Trigger: GCTTGGGCTACAGTGAGGCCATTTTTGAATTGAAGA...CCGCAGCACCTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATGGTGAGCTGCTGGATGTTTTaGTTCTGGTTGGACAAGCCA +
Preference number: 4 (lower is better)
Translates to: DQLTAYHPTPGLGLFSMVSCWMF*FWLDKP
Trigger: TGGCTTGTCCAACCAGAACCAAAACATCCAGCAGCT...CACCATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp CATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCGTAGTACTTTGTGGTTaGCTCCTTCATGGAGTACAG +
Preference number: 4 (lower is better)
Translates to: HHQNLPGWSTEDLCGVCFVVLCG*LLHGVQ
Trigger: CTGTACTCCATGAAGGAGTCAACCACAAAGTACTAC...GAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp TCATGGGTAAGGAACAGAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGTAGTACTTTGTGGTTaGCTCCTTCATGGAGTACAG +
Preference number: 4 (lower is better)
Translates to: SWVRNRDQLTAYHPTPGLVVLCG*LLHGVQ
Trigger: CTGTACTCCATGAAGGAGTCAACCACAAAGTACTAC...GAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTCTGTTCCTTACCCATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp GGTAAGGAACAGAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTTGGACAAGCCATTCCTaGTGTTTTCTAATAGGCATC +
Preference number: 4 (lower is better)
Translates to: GKEQRSTYCLPPHPGPRVWTSHS*CFLIGI
Trigger: GATGCCTATTAGAAAACATCAGGAATGGCTTGTCCA...AACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTCTGTTCCTTACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp CAGTGCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGATTCAGCAGGACTTCCTaGTGCAGAAAGGTGTCTGAA +
Preference number: 4 (lower is better)
Translates to: QCLTLCCTSPKPSRLVHRFSRTS*CRKVSE
Trigger: TTCAGACACCTTTCTGCAGCAGGAAGTCCTGCTGAA...TCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGCACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp AGCAACTCACAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGTTCAGCAGGACTTCCTaGTGCAGAAAGGTGTCTGAA +
Preference number: 4 (lower is better)
Translates to: SNSQSRGRQETHVTMCREFSRTS*CRKVSE
Trigger: TTCAGACACCTTTCTGCAGCAGGAAGTCCTGCTGAA...CTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTGTGAGTTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp CTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGTCTCCCAGATCTGAATaGCCTTTGACCAGTAATTCC +
Preference number: 4 (lower is better)
Translates to: LCCTSPKPSRLVHRGPVWSPRSE*PLTSNS
Trigger: GGAATTACTGGTCAAAGGGCATTCAGATCTGGGAGA...CCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093362.12
CDS-3UTR CCA 90 bp GCGTGGAGAGGCAGAACCTGCACACTACTGTCATTTGAGTATACATTCAACTCAATCTGCAGGGAGTCCTaGAGGGTGAGCTTCTGTGCC +
Preference number: 4 (lower is better)
Translates to: AWRGRTCTLLSFEYTFNSICRES*RVSFCA
Trigger: GGCACAGAAGCTCACCCTCCAGGACTCCCTGCAGAT...TGAGTTGAATGTATACTCAAATGACAGTAGTGTGCAGGTTCTGCCTCTCCACGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GTCCCTGACCAAGTAACTGTCTCAAACAGTGGCTCCATTGCTGCACTTTTCAGACAAACGTGGGCACCCTaGACAGGACCACACTGTCTT +
Preference number: 4 (lower is better)
Translates to: VPDQVTVSNSGSIAALFRQTWAP*TGPHCL
Trigger: AAGACAGTGTGGTCCTGTCCAGGGTGCCCACGTTTG...TCTGAAAAGTGCAGCAATGGAGCCACTGTTTGAGACAGTTACTTGGTCAGGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGGTGCTGCGGTGGTTGACTCCTTCATaGAGTACAGCAGTTTGTATT +
Preference number: 4 (lower is better)
Translates to: QSRGRQETHVTMCREVLRWLTPS*STAVCI
Trigger: AATACAAACTGCTGTACTCCATGAAGGAGTCAACCA...CCGCAGCACCTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp AGCAACTCACAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGCGCATGAAGAACAGCTaGTGGGATGTCCTTTGTTTC +
Preference number: 4 (lower is better)
Translates to: SNSQSRGRQETHVTMCRERMKNS*WDVLCF
Trigger: GAAACAAAGGACATCCCACCAGCTGTTCTTCATGCG...CTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTGTGAGTTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATGGTGAGCTCAATGAGCTGCTaGATGTTTTGGTTCTGGTTG +
Preference number: 4 (lower is better)
Translates to: DQLTAYHPTPGLGLFSMVSSMSC*MFWFWL
Trigger: CAACCAGAACCAAAACATCCAGCAGCTCATTGAGCT...CACCATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CCTCTTCAGGCAGAGGCTGCTGTCCTAAGCATGAGGACAATGAAGGCGTGGAGAAGCTCAATGAGCTGCTaGATGTTTTGGTTCTGGTTG +
Preference number: 4 (lower is better)
Translates to: PLQAEAAVLSMRTMKAWRSSMSC*MFWFWL
Trigger: CAACCAGAACCAAAACATCCAGCAGCTCATTGAGCT...TCTCCACGCCTTCATTGTCCTCATGCTTAGGACAGCAGCCTCTGCCTGAAGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp TCTAGGCAGATCAGAGATCCTGCAAAGTTTCAGGATTGCTTTTCTCATCCGCACACTTGGAGTTGCTGCTaGCATCCATGCGCACGAAGG +
Preference number: 4 (lower is better)
Translates to: SRQIRDPAKFQDCFSHPHTWSCC*HPCARR
Trigger: CCTTCGTGCGCATGGATGTCAGCAGCAACTCCAAGT...GTGCGGATGAGAAAAGCAATCCTGAAACTTTGCAGGATCTCTGATCTGCCTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp ATCCTCCATCTCTCAAGTCCTGATACCACAGCTATGCACCACCATTCCCAGTATCGGTCCTTTGCCTTCTaGCACTCCTCAAAGTCCTCA +
Preference number: 4 (lower is better)
Translates to: ILHLSSPDTTAMHHHSQYRSFAF*HSSKSS
Trigger: TGAGGACTTTGAGGAGTGTCAGAAGGCAAAGGACCG...ATACTGGGAATGGTGGTGCATAGCTGTGGTATCAGGACTTGAGAGATGGAGGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp GTCCCTGACCAAGTAACTGTCTCAAACAGTGGCTCCATTGCTGCACTTTTCAGAAAATTGAGGTCCCGATaGCAGAAGCAGTCCCACTGG +
Preference number: 4 (lower is better)
Translates to: VPDQVTVSNSGSIAALFRKLRSR*QKQSHW
Trigger: CCAGTGGGACTGCTTCTGGCATCGGGACCTCAATTT...TCTGAAAAGTGCAGCAATGGAGCCACTGTTTGAGACAGTTACTTGGTCAGGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp CAACTCCCAGGTGCCGGCCACAGCCTTACTGTCACAGCCTTACTGTCGTTACAGTCTCCATTCCAAATCTaGAATTGCCACAGATGTTTG +
Preference number: 4 (lower is better)
Translates to: QLPGAGHSLTVTALLSLQSPFQI*NCHRCL
Trigger: CAAACATCTGTGGCAATTGCAGATTTGGAATGGAGA...CTGTAACGACAGTAAGGCTGTGACAGTAAGGCTGTGGCCGGCACCTGGGAGTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093362.12
CDS-3UTR CCA 90 bp CAACTCCCAGGTGCCGGCCACAGCCTTACTGTCACAGCCTTACTGTCGTTACAGTGGTTGACTCCTTCATaGAGTACAGCAGTTTGTATT +
Preference number: 4 (lower is better)
Translates to: QLPGAGHSLTVTALLSLQWLTPS*STAVCI
Trigger: AATACAAACTGCTGTACTCCATGAAGGAGTCAACCA...CTGTAACGACAGTAAGGCTGTGACAGTAAGGCTGTGGCCGGCACCTGGGAGTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CCTGGAACCAAGGGCACCTTTGCTGAATCTAGTAAAAGGACAAGACACAGGAGACTCTTGGTTTGGGGCTaGGAACAGGCAGGTCATGAA +
Preference number: 4 (lower is better)
Translates to: PGTKGTFAESSKRTRHRRLLVWG*EQAGHE
Trigger: TTCATGACCTGCCTGTTCCCAGCCCCAAACCAAGAG...TCTCCTGTGTCTTGTCCTTTTACTAGATTCAGCAAAGGTGCCCTTGGTTCCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGTCTTCAATTCAAAAATaGCCTCACTGTAGCCCAAGC +
Preference number: 4 (lower is better)
Translates to: LCCTSPKPSRLVHRGPVWSSIQK*PHCSPS
Trigger: GCTTGGGCTACAGTGAGGCCATTTTTGAATTGAAGA...CCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp AACTCACAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGGTGAGCTCAATGAGCTGCTaGATGTTTTGGTTCTGGTTG +
Preference number: 4 (lower is better)
Translates to: NSQSRGRQETHVTMCREVSSMSC*MFWFWL
Trigger: CAACCAGAACCAAAACATCCAGCAGCTCATTGAGCT...CACCTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTGTGAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CAGTGCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAAGCTCAATGAGCTGCTaGATGTTTTGGTTCTGGTTG +
Preference number: 4 (lower is better)
Translates to: QCLTLCCTSPKPSRLVHRSSMSC*MFWFWL
Trigger: CAACCAGAACCAAAACATCCAGCAGCTCATTGAGCT...TCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGCACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
3UTR CAA 72 bp AGAGAGCGCACAAGTACCCTGGAACCAAGGGCACCTTaGCTGAATCTAGTAAAAGGACAAGACACAGGAGAG +
Preference number: 4 (lower is better)
Translates to: RERTSTLEPRAP*LNLVKGQDTGE
Trigger: CTCTCCTGTGTCTTGTCCTTTTACTAGATTCAGCAAAGGTGCCCTTGGTTCCAGGGTACTTGTGCGCTCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp TTTGCTGAATCTAGTAAAAGGACAAGACACAGGAGAGGTTCTCAGGCCATGGCCGGGAAGTCATTGTCCTaGGCCTCGTTTGTACCATCT +
Preference number: 4 (lower is better)
Translates to: FAESSKRTRHRRGSQAMAGKSLS*ASFVPS
Trigger: AGATGGTACAAACGAGGCTCAGGACAATGACTTCCC...GGCCATGGCCTGAGAACCTCTCCTGTGTCTTGTCCTTTTACTAGATTCAGCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp CCTGGAACCAAGGGCACCTTTGCTGAATCTAGTAAAAGGACAAGACACAGGAGAGGGAAGTCATTGTCCTaGGCCTCGTTTGTACCATCT +
Preference number: 4 (lower is better)
Translates to: PGTKGTFAESSKRTRHRRGKSLS*ASFVPS
Trigger: AGATGGTACAAACGAGGCTCAGGACAATGACTTCCC...TCTCCTGTGTCTTGTCCTTTTACTAGATTCAGCAAAGGTGCCCTTGGTTCCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp TCTAGGCAGATCAGAGATCCTGCAAAGTTTCAGGATTGCTTTTCTCATCCGCACTTGAACTGCAGCCAGTaGGACCCAATGTCACCTCTC +
Preference number: 4 (lower is better)
Translates to: SRQIRDPAKFQDCFSHPHLNCSQ*DPMSPL
Trigger: GAGAGGTGACATTGGGTCTCACTGGCTGCAGTTCAA...GTGCGGATGAGAAAAGCAATCCTGAAACTTTGCAGGATCTCTGATCTGCCTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp TCTAGGCAGATCAGAGATCCTGCAAAGTTTCAGGATTGCTTTTCTCATCCGCACAAATTGAGGTCCCGATaGCAGAAGCAGTCCCACTGG +
Preference number: 4 (lower is better)
Translates to: SRQIRDPAKFQDCFSHPHKLRSR*QKQSHW
Trigger: CCAGTGGGACTGCTTCTGGCATCGGGACCTCAATTT...GTGCGGATGAGAAAAGCAATCCTGAAACTTTGCAGGATCTCTGATCTGCCTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CCTGGAACCAAGGGCACCTTTGCTGAATCTAGTAAAAGGACAAGACACAGGAGATGCTTCTCTCCACTGTaGGGAAGTCATTGTCCTGAG +
Preference number: 4 (lower is better)
Translates to: PGTKGTFAESSKRTRHRRCFSPL*GSHCPE
Trigger: CTCAGGACAATGACTTCCCCACAGTGGAGAGAAGCA...TCTCCTGTGTCTTGTCCTTTTACTAGATTCAGCAAAGGTGCCCTTGGTTCCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp AACTCACAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGGTGTGGTTGACTCCTTCATaGAGTACAGCAGTTTGTATT +
Preference number: 4 (lower is better)
Translates to: NSQSRGRQETHVTMCREVWLTPS*STAVCI
Trigger: AATACAAACTGCTGTACTCCATGAAGGAGTCAACCA...CACCTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTGTGAGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CAGTGCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGATGGTTGACTCCTTCATaGAGTACAGCAGTTTGTATT +
Preference number: 4 (lower is better)
Translates to: QCLTLCCTSPKPSRLVHRWLTPS*STAVCI
Trigger: AATACAAACTGCTGTACTCCATGAAGGAGTCAACCA...TCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGCACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GAATCAGCAAGTTATTTTAACATTCTAGGCAGATCAGAGATCCTGCAAAGTTTCCCTGCTCAGGTCGCTTaGCGGATCCAGGAGCTGCCT +
Preference number: 4 (lower is better)
Translates to: ESASYFNILGRSEILQSFPAQVA*RIQELP
Trigger: AGGCAGCTCCTGGATCCGCCAAGCGACCTGAGCAGG...GAAACTTTGCAGGATCTCTGATCTGCCTAGAATGTTAAAATAACTTGCTGATTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp ATCCTCCATCTCTCAAGTCCTGATACCACAGCTATGCACCACCATTCCCAGTATAGCTGCTGGATGTTTTaGTTCTGGTTGGACAAGCCA +
Preference number: 4 (lower is better)
Translates to: ILHLSSPDTTAMHHHSQYSCWMF*FWLDKP
Trigger: TGGCTTGTCCAACCAGAACCAAAACATCCAGCAGCT...ATACTGGGAATGGTGGTGCATAGCTGTGGTATCAGGACTTGAGAGATGGAGGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp ATCCTCCATCTCTCAAGTCCTGATACCACAGCTATGCACCACCATTCCCAGTATGTAGTACTTTGTGGTTaGCTCCTTCATGGAGTACAG +
Preference number: 4 (lower is better)
Translates to: ILHLSSPDTTAMHHHSQYVVLCG*LLHGVQ
Trigger: CTGTACTCCATGAAGGAGTCAACCACAAAGTACTAC...ATACTGGGAATGGTGGTGCATAGCTGTGGTATCAGGACTTGAGAGATGGAGGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp GGCAGATCAGAGATCCTGCAAAGTTTCAGGATTGCTTTTCTCATCCGCACACGGTGGACAAGCCATTCCTaGTGTTTTCTAATAGGCATC +
Preference number: 4 (lower is better)
Translates to: GRSEILQSFRIAFLIRTRWTSHS*CFLIGI
Trigger: GATGCCTATTAGAAAACATCAGGAATGGCTTGTCCA...CCGTGTGCGGATGAGAAAAGCAATCCTGAAACTTTGCAGGATCTCTGATCTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp TCTAGGCAGATCAGAGATCCTGCAAAGTTTCAGGATTGCTTTTCTCATCCGCACAGCAGCTCAATGAGCTaGTGGATGTTTTGGTTCTGG +
Preference number: 4 (lower is better)
Translates to: SRQIRDPAKFQDCFSHPHSSSMS*WMFWFW
Trigger: CCAGAACCAAAACATCCAGCAGCTCATTGAGCTGCT...GTGCGGATGAGAAAAGCAATCCTGAAACTTTGCAGGATCTCTGATCTGCCTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp GCGTGGAGAGGCAGAACCTGCACACTACTGTCATTTGAGTATACATTCAACTCATACAGCTCCTCCCAGTaGCAAATTTCAGGCCAAACA +
Preference number: 4 (lower is better)
Translates to: AWRGRTCTLLSFEYTFNSYSSSQ*QISGQT
Trigger: TGTTTGGCCTGAAATTTGCCACTGGGAGGAGCTGTA...TGAGTTGAATGTATACTCAAATGACAGTAGTGTGCAGGTTCTGCCTCTCCACGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp CTAGTAAAAGGACAAGACACAGGAGAGGTTCTCAGGCCATGGCCTGACTTCTCTTCTTCAATTCAAAAATaGCCTCACTGTAGCCCAAGC +
Preference number: 4 (lower is better)
Translates to: LVKGQDTGEVLRPWPDFSSSIQK*PHCSPS
Trigger: GCTTGGGCTACAGTGAGGCCATTTTTGAATTGAAGA...AGAGAAGTCAGGCCATGGCCTGAGAACCTCTCCTGTGTCTTGTCCTTTTACTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
3UTR CAA 72 bp GGTGAGTTCCAGAGATCAAATTCAAGTTGTTATGCTTaGCTGCAAGTGTTTGCACCCACTTACAGGACCCCC +
Preference number: 4 (lower is better)
Translates to: GEFQRSNSSCYA*LQVFAPTYRTP
Trigger: GGGGGTCCTGTAAGTGGGTGCAAACACTTGCAGCAAAGCATAACAACTTGAATTTGATCTCTGGAACTCACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp GAATCAGCAAGTTATTTTAACATTCTAGGCAGATCAGAGATCCTGCAAAGTTTCCTGCAGAAAGGTGTCTaGAGACAGCAGGAGGGCGCA +
Preference number: 4 (lower is better)
Translates to: ESASYFNILGRSEILQSFLQKGV*RQQEGA
Trigger: TGCGCCCTCCTGCTGTCTTCAGACACCTTTCTGCAG...GAAACTTTGCAGGATCTCTGATCTGCCTAGAATGTTAAAATAACTTGCTGATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp GCGTGGAGAGGCAGAACCTGCACACTACTGTCATTTGAGTATACATTCAACTCAGTAGTACTTTGTGGTTaGCTCCTTCATGGAGTACAG +
Preference number: 4 (lower is better)
Translates to: AWRGRTCTLLSFEYTFNSVVLCG*LLHGVQ
Trigger: CTGTACTCCATGAAGGAGTCAACCACAAAGTACTAC...TGAGTTGAATGTATACTCAAATGACAGTAGTGTGCAGGTTCTGCCTCTCCACGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CCA 90 bp TCTAGGCAGATCAGAGATCCTGCAAAGTTTCAGGATTGCTTTTCTCATCCGCACTCTTCAATTCAAAAATaGCCTCACTGTAGCCCAAGC +
Preference number: 4 (lower is better)
Translates to: SRQIRDPAKFQDCFSHPHSSIQK*PHCSPS
Trigger: GCTTGGGCTACAGTGAGGCCATTTTTGAATTGAAGA...GTGCGGATGAGAAAAGCAATCCTGAAACTTTGCAGGATCTCTGATCTGCCTAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR TCA 90 bp GAATCAGCAAGTTATTTTAACATTCTAGGCAGATCAGAGATCCTGCAAAGTTTCAGGCATGGGCAGCTCTaGGAAAGAGTAGATGTCAGC +
Preference number: 4 (lower is better)
Translates to: ESASYFNILGRSEILQSFRHGQL*ERVDVS
Trigger: GCTGACATCTACTCTTTCTCAGAGCTGCCCATGCCT...GAAACTTTGCAGGATCTCTGATCTGCCTAGAATGTTAAAATAACTTGCTGATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR GCA 90 bp GAATCAGCAAGTTATTTTAACATTCTAGGCAGATCAGAGATCCTGCAAAGTTTCCAACACAAGTGGGAGTaGAAACTGACAGAGGGACAT +
Preference number: 4 (lower is better)
Translates to: ESASYFNILGRSEILQSFQHKWE*KLTEGH
Trigger: ATGTCCCTCTGTCAGTTTGCACTCCCACTTGTGTTG...GAAACTTTGCAGGATCTCTGATCTGCCTAGAATGTTAAAATAACTTGCTGATTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS GCA 90 bp GCCATGGGTGGCGCTCCATGCCACAAGGCTGGGATGTGCCAGACGTaGTGCCTCTCGGCCAGGCCCGCCAGTGTCCGGAAGCCGCCGCCC +
Preference number: 5 (lower is better)
Translates to: AMGGAPCHKAGMCQT*CLSARPASVRKPPP
Trigger: GGGCGGCGGCTTCCGGACACTGGCGGGCCTGGCCGAGAGGCAGCACGTCTGGCACATCCCAGCCTTGTGGCATGGAGCGCCACCCATGGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS GCA 90 bp ATGGGTGGCGCTCCATGCCACAAGGCTGGGATGTGCCAGACGTGCTaGCTCTCGGCCAGGCCCGCCAGTGTCCGGAAGCCGCCGCCCTGC +
Preference number: 5 (lower is better)
Translates to: MGGAPCHKAGMCQTC*LSARPASVRKPPPC
Trigger: GCAGGGCGGCGGCTTCCGGACACTGGCGGGCCTGGCCGAGAGGCAGCACGTCTGGCACATCCCAGCCTTGTGGCATGGAGCGCCACCCAT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS GCA 90 bp TGCTGCACCCGGAGCTCAAGGACGCGCCGTCTCAGCTCGGCCCGGTaGTTCTCTGGGGGCTCCGGGACCCACTGGAGCTGGCAGAACTCT +
Preference number: 5 (lower is better)
Translates to: CCTRSSRTRRLSSAR*FSGGSGTHWSWQNS
Trigger: AGAGTTCTGCCAGCTCCAGTGGGTCCCGGAGCCCCCAGAGAAGCACCGGGCCGAGCTGAGACGGCGCGTCCTTGAGCTCCGGGTGCAGCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS GCA 90 bp TGCTGCCTCTCGGCCAGGCCCGCCAGTGTCCGGAAGCCGCCGCCCTaGTTTTCCAAGTGGGTAGCCCTGCTCAGGTCGCTTGGCGGATCC +
Preference number: 5 (lower is better)
Translates to: CCLSARPASVRKPPP*FSKWVALLRSLGGS
Trigger: GGATCCGCCAAGCGACCTGAGCAGGGCTACCCACTTGGAAAAGCAGGGCGGCGGCTTCCGGACACTGGCGGGCCTGGCCGAGAGGCAGCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS GCA 90 bp CTCACAGCGGCCATGGGTGGCGCTCCATGCCACAAGGCTGGGATGTaGCAGACGTGCTGCCTCTCGGCCAGGCCCGCCAGTGTCCGGAAG +
Preference number: 5 (lower is better)
Translates to: LTAAMGGAPCHKAGM*QTCCLSARPASVRK
Trigger: CTTCCGGACACTGGCGGGCCTGGCCGAGAGGCAGCACGTCTGGCACATCCCAGCCTTGTGGCATGGAGCGCCACCCATGGCCGCTGTGAG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 90 bp GCCAGGCCCGCCAGTGTCCGGAAGCCGCCGCCCTGCTTTTCCAAGTaGGTAGCCCTGCTCAGGTCGCTTGGCGGATCCAGGAGCTGCCTC +
Preference number: 5 (lower is better)
Translates to: ARPASVRKPPPCFSK*VALLRSLGGSRSCL
Trigger: GAGGCAGCTCCTGGATCCGCCAAGCGACCTGAGCAGGGCTACCCACTTGGAAAAGCAGGGCGGCGGCTTCCGGACACTGGCGGGCCTGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 90 bp GCCCAAGCTCACAGCGGCCATGGGTGGCGCTCCATGCCACAAGGCTaGGATGTGCCAGACGTGCTGCCTCTCGGCCAGGCCCGCCAGTGT +
Preference number: 5 (lower is better)
Translates to: AQAHSGHGWRSMPQG*DVPDVLPLGQARQC
Trigger: ACACTGGCGGGCCTGGCCGAGAGGCAGCACGTCTGGCACATCCCAGCCTTGTGGCATGGAGCGCCACCCATGGCCGCTGTGAGCTTGGGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 90 bp CCGGAGCTCAAGGACGCGCCGTCTCAGCTCGGCCCGGTGCTTCTCTaGGGGCTCCGGGACCCACTGGAGCTGGCAGAACTCTCTTTCAGC +
Preference number: 5 (lower is better)
Translates to: PELKDAPSQLGPVLL*GLRDPLELAELSFS
Trigger: GCTGAAAGAGAGTTCTGCCAGCTCCAGTGGGTCCCGGAGCCCCCAGAGAAGCACCGGGCCGAGCTGAGACGGCGCGTCCTTGAGCTCCGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS GCA 90 bp ACCCGGGAAGTGGGCAAAGCGCCTCTGGCCAGCGGGCAGCCTCCCTaGCTCGATCAGGCAGCTCTCCGCTTCATAGAACTGGCCCATCTC +
Preference number: 5 (lower is better)
Translates to: TREVGKAPLASGQPP*LDQAALRFIELAHL
Trigger: GAGATGGGCCAGTTCTATGAAGCGGAGAGCTGCCTGATCGAGGCAGGGAGGCTGCCCGCTGGCCAGAGGCGCTTTGCCCACTTCCCGGGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 90 bp CAGTCCCACTGGCGGCGGGCCGGGCTGAGGACGGCATTGAGCAGCTaGGACTTGGAGTTGCTGCTGACATCCATGCGCACGAAGGCAAAC +
Preference number: 5 (lower is better)
Translates to: QSHWRRAGLRTALSS*DLELLLTSMRTKAN
Trigger: GTTTGCCTTCGTGCGCATGGATGTCAGCAGCAACTCCAAGTCCCAGCTGCTCAATGCCGTCCTCAGCCCGGCCCGCCGCCAGTGGGACTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS GCA 90 bp CCATCCGAGATCTCGCGAGGATTAGTGCCTAAATTGAGGTCCCGATaGCAGAAGCAGTCCCACTGGCGGCGGGCCGGGCTGAGGACGGCA +
Preference number: 5 (lower is better)
Translates to: PSEISRGLVPKLRSR*QKQSHWRRAGLRTA
Trigger: TGCCGTCCTCAGCCCGGCCCGCCGCCAGTGGGACTGCTTCTGGCATCGGGACCTCAATTTAGGCACTAATCCTCGCGAGATCTCGGATGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 90 bp GGATTAGTGCCTAAATTGAGGTCCCGATGCCAGAAGCAGTCCCACTaGCGGCGGGCCGGGCTGAGGACGGCATTGAGCAGCTGGGACTTG +
Preference number: 5 (lower is better)
Translates to: GLVPKLRSRCQKQSH*RRAGLRTALSSWDL
Trigger: CAAGTCCCAGCTGCTCAATGCCGTCCTCAGCCCGGCCCGCCGCCAGTGGGACTGCTTCTGGCATCGGGACCTCAATTTAGGCACTAATCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp CCCGTCACCCCTGGCTGTCACTGGCCTTCACTCCATGAGCAGCAGGCACCAGCCTTGAGCAGCTGGGACTaGGAGTTGCTGCTGACATCC +
Preference number: 5 (lower is better)
Translates to: PVTPGCHWPSLHEQQAPALSSWD*ELLLTS
Trigger: GGATGTCAGCAGCAACTCCAAGTCCCAGCTGCTCAA...GGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAGTGACAGCCAGGGGTGACGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp TTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTTGGGACAACCTCCCTGCTCAGGTCGCTaGGCGGATCCAGGAGCTGCC +
Preference number: 5 (lower is better)
Translates to: FQAGPQRTCVESASLGQPPCSGR*ADPGAA
Trigger: GGCAGCTCCTGGATCCGCCAAGCGACCTGAGCAGGG...AGGTTGTCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp CAACTCCCAGGTGCCGGCCACAGCCTTACTGTCACAGCCTTACTGTCGTTACAGCCCTGCTCAGGTCGCTaGGCGGATCCAGGAGCTGCC +
Preference number: 5 (lower is better)
Translates to: QLPGAGHSLTVTALLSLQPCSGR*ADPGAA
Trigger: GGCAGCTCCTGGATCCGCCAAGCGACCTGAGCAGGG...CTGTAACGACAGTAAGGCTGTGACAGTAAGGCTGTGGCCGGCACCTGGGAGTTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS GCA 90 bp CTCAAAGTCCTCATCAACTCTGAGGCCGAGCTTACGTGCCGCGTGTaGCATGTCCTCCACAGACACCCTCCTGCAGGGAGAGCGAGCCAC +
Preference number: 5 (lower is better)
Translates to: LKVLINSEAELTCRV*HVLHRHPPAGRASH
Trigger: GTGGCTCGCTCTCCCTGCAGGAGGGTGTCTGTGGAGGACATGGCACACGCGGCACGTAAGCTCGGCCTCAGAGTTGATGAGGACTTTGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp CATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCCCTGCTCAGGTCGCTaGGCGGATCCAGGAGCTGCC +
Preference number: 5 (lower is better)
Translates to: HHQNLPGWSTEDLCGVCFPCSGR*ADPGAA
Trigger: GGCAGCTCCTGGATCCGCCAAGCGACCTGAGCAGGG...GAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp GCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCCCTGCTCAGGTCGCTaGGCGGATCCAGGAGCTGCC +
Preference number: 5 (lower is better)
Translates to: ASHFAAHHQNLPGWSTEDPCSGR*ADPGAA
Trigger: GGCAGCTCCTGGATCCGCCAAGCGACCTGAGCAGGG...GTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS GCA 90 bp AGGCACGTCCAGCACCATGGTGGTGTTCCTGGCTTCGGCGTTGAGTaGCTGCAGCTTCCTGAGGAAATGCCAGGGAAGGTCCTTGGGAAC +
Preference number: 5 (lower is better)
Translates to: RHVQHHGGVPGFGVE*LQLPEEMPGKVLGN
Trigger: GTTCCCAAGGACCTTCCCTGGCATTTCCTCAGGAAGCTGCAGGCACTCAACGCCGAAGCCAGGAACACCACCATGGTGCTGGACGTGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000140922.2
ENSMUST00000170116.8
CDS CCA 90 bp GGAGGGCGCAGAGAAGATCCAGGGGGTTCACAGGCGTATCAGGCATaGGCAGCTCTGAGAAAGAGTAGATGTCAGCAGCGACGTCCTCCG +
Preference number: 5 (lower is better)
Translates to: GGRREDPGGSQAYQA*AALRKSRCQQRRPP
Trigger: CGGAGGACGTCGCTGCTGACATCTACTCTTTCTCAGAGCTGCCCATGCCTGATACGCCTGTGAACCCCCTGGATCTTCTCTGCGCCCTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 90 bp ACCAAGTTTTGGTCTGAGGGTGAGAAGGGTCTCTGGAGGCTGTCTTaGCCGTGGCTGGCCAAGCCGAGCCAAGCCCCACTCCATCCATCT +
Preference number: 5 (lower is better)
Translates to: TKFWSEGEKGLWRLS*PWLAKPSQAPLHPS
Trigger: AGATGGATGGAGTGGGGCTTGGCTCGGCTTGGCCAGCCACGGCCAAGACAGCCTCCAGAGACCCTTCTCACCCTCAGACCAAAACTTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 90 bp TTCAAAAATGGCCTCACTGTAGCCCAAGCTCACAGCGGCCATGGGTaGCGCTCCATGCCACAAGGCTGGGATGTGCCAGACGTGCTGCCT +
Preference number: 5 (lower is better)
Translates to: FKNGLTVAQAHSGHG*RSMPQGWDVPDVLP
Trigger: AGGCAGCACGTCTGGCACATCCCAGCCTTGTGGCATGGAGCGCCACCCATGGCCGCTGTGAGCTTGGGCTACAGTGAGGCCATTTTTGAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp TCATGGGTAAGGAACAGAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCTCTCTGGAGGCTGTCTaGGCCGTGGCTGGCCAAGCC +
Preference number: 5 (lower is better)
Translates to: SWVRNRDQLTAYHPTPGLSLEAV*AVAGQA
Trigger: GGCTTGGCCAGCCACGGCCAAGACAGCCTCCAGAGA...GAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTCTGTTCCTTACCCATGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp CAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGGTGCTGCGGCTCCTGTCTCTTGGTTaGGGGCTGGGAACAGGCAGG +
Preference number: 5 (lower is better)
Translates to: QSRGRQETHVTMCREVLRLLSLG*GLGTGR
Trigger: CCTGCCTGTTCCCAGCCCCAAACCAAGAGACAGGAG...CCGCAGCACCTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp CAGAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATCCCTGCTCAGGTCGCTaGGCGGATCCAGGAGCTGCC +
Preference number: 5 (lower is better)
Translates to: QRSTYCLPPHPGPRVILNPCSGR*ADPGAA
Trigger: GGCAGCTCCTGGATCCGCCAAGCGACCTGAGCAGGG...ATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS TCA 90 bp GAGAAGATCCAGGGGGTTCACAGGCGTATCAGGCATGGGCAGCTCTaGGAAAGAGTAGATGTCAGCAGCGACGTCCTCCGCTGGGTCCCA +
Preference number: 5 (lower is better)
Translates to: EKIQGVHRRIRHGQL*ERVDVSSDVLRWVP
Trigger: TGGGACCCAGCGGAGGACGTCGCTGCTGACATCTACTCTTTCTCAGAGCTGCCCATGCCTGATACGCCTGTGAACCCCCTGGATCTTCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS TCA 90 bp AAACCCCCAGAGTCTATTACCAGGATCTGGTCACAGCCCAGGTCCTaGCTGAAGCCCTCAGCTACAGGGAGGAGCTGCATGAAGGCCCCC +
Preference number: 5 (lower is better)
Translates to: KPPESITRIWSQPRS*LKPSATGRSCMKAP
Trigger: GGGGGCCTTCATGCAGCTCCTCCCTGTAGCTGAGGGCTTCAGTCAGGACCTGGGCTGTGACCAGATCCTGGTAATAGACTCTGGGGGTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS GCA 90 bp CTGACACTCCTCAAAGTCCTCATCAACTCTGAGGCCGAGCTTACGTaGCGCGTGTGCCATGTCCTCCACAGACACCCTCCTGCAGGGAGA +
Preference number: 5 (lower is better)
Translates to: LTLLKVLINSEAELT*RVCHVLHRHPPAGR
Trigger: TCTCCCTGCAGGAGGGTGTCTGTGGAGGACATGGCACACGCGGCACGTAAGCTCGGCCTCAGAGTTGATGAGGACTTTGAGGAGTGTCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp AAGAAAGGGTTCCAGATCAGAGAGCGCACAAGTACCCTGGAACCAAGGGCACCTTCTCTGGAGGCTGTCTaGGCCGTGGCTGGCCAAGCC +
Preference number: 5 (lower is better)
Translates to: KKGFQIRERTSTLEPRAPSLEAV*AVAGQA
Trigger: GGCTTGGCCAGCCACGGCCAAGACAGCCTCCAGAGA...AGGTGCCCTTGGTTCCAGGGTACTTGTGCGCTCTCTGATCTGGAACCCTTTCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp CAGAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATTCTCTGGAGGCTGTCTaGGCCGTGGCTGGCCAAGCC +
Preference number: 5 (lower is better)
Translates to: QRSTYCLPPHPGPRVILNSLEAV*AVAGQA
Trigger: GGCTTGGCCAGCCACGGCCAAGACAGCCTCCAGAGA...ATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp CAGTGCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGATCTCTGGAGGCTGTCTaGGCCGTGGCTGGCCAAGCC +
Preference number: 5 (lower is better)
Translates to: QCLTLCCTSPKPSRLVHRSLEAV*AVAGQA
Trigger: GGCTTGGCCAGCCACGGCCAAGACAGCCTCCAGAGA...TCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGCACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp CCAATGAAGGAGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGTGCTGCCTCCTGTCTCTaGGTTTGGGGCTGGGAACAG +
Preference number: 5 (lower is better)
Translates to: PMKEQLPRGPIARSFVMGAASCL*VWGWEQ
Trigger: CTGTTCCCAGCCCCAAACCAAGAGACAGGAGGCAGC...ACCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCTCCTTCATTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 90 bp TCAATTCAAAAATGGCCTCACTGTAGCCCAAGCTCACAGCGGCCATaGGTGGCGCTCCATGCCACAAGGCTGGGATGTGCCAGACGTGCT +
Preference number: 5 (lower is better)
Translates to: SIQKWPHCSPSSQRP*VALHATRLGCARRA
Trigger: AGCACGTCTGGCACATCCCAGCCTTGTGGCATGGAGCGCCACCCATGGCCGCTGTGAGCTTGGGCTACAGTGAGGCCATTTTTGAATTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp CCCCTGGCTGTCACTGGCCTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCTGTCCTGAGCCTCGTTaGTACCATCTCCATAATGGA +
Preference number: 5 (lower is better)
Translates to: PLAVTGLHSMSSRHQPTPCPEPR*YHLHNG
Trigger: TCCATTATGGAGATGGTACAAACGAGGCTCAGGACA...GGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAGGCCAGTGACAGCCAGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp CATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTCCTGTCTCTTGGTTaGGGGCTGGGAACAGGCAGG +
Preference number: 5 (lower is better)
Translates to: HHQNLPGWSTEDLCGVCFLLSLG*GLGTGR
Trigger: CCTGCCTGTTCCCAGCCCCAAACCAAGAGACAGGAG...GAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp AAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTTGGGACTCCTGTCTCTTGGTTaGGGGCTGGGAACAGGCAGG +
Preference number: 5 (lower is better)
Translates to: KTFQAGPQRTCVESASLGLLSLG*GLGTGR
Trigger: CCTGCCTGTTCCCAGCCCCAAACCAAGAGACAGGAG...TCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp GATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATGGTGGCTGCCTCCTGTCTCTaGGTTTGGGGCTGGGAACAG +
Preference number: 5 (lower is better)
Translates to: DQLTAYHPTPGLGLFSMVAASCL*VWGWEQ
Trigger: CTGTTCCCAGCCCCAAACCAAGAGACAGGAGGCAGC...CACCATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS TCA 90 bp ACAGAGGGACATCTTCAGCAGGACTTCCTGCTGCAGAAAGGTGTCTaGAGACAGCAGGAGGGCGCAGAGAAGATCCAGGGGGTTCACAGG +
Preference number: 5 (lower is better)
Translates to: TEGHLQQDFLLQKGV*RQQEGAEKIQGVHR
Trigger: CCTGTGAACCCCCTGGATCTTCTCTGCGCCCTCCTGCTGTCTTCAGACACCTTTCTGCAGCAGGAAGTCCTGCTGAAGATGTCCCTCTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS TCA 90 bp CTCACGAAGCCCTCGCTGTCCGTGCTGCTGACCTTCACCAGGACGTaGGAGTGGTCTATCTTCAACACTGGGATCAGCCTGTTGAGGAAG +
Preference number: 5 (lower is better)
Translates to: LTKPSLSVLLTFTRT*EWSIFNTGISLLRK
Trigger: CTTCCTCAACAGGCTGATCCCAGTGTTGAAGATAGACCACTCTCACGTCCTGGTGAAGGTCAGCAGCACGGACAGCGAGGGCTTCGTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS TCA 90 bp TCCGGTCCTTTGCCTTCTGACACTCCTCAAAGTCCTCATCAACTCTaGGGCCGAGCTTACGTGCCGCGTGTGCCATGTCCTCCACAGACA +
Preference number: 5 (lower is better)
Translates to: SGPLPSDTPQSPHQL*GRAYVPRVPCPPQT
Trigger: TGTCTGTGGAGGACATGGCACACGCGGCACGTAAGCTCGGCCTCAGAGTTGATGAGGACTTTGAGGAGTGTCAGAAGGCAAAGGACCGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 90 bp TCAGGTCGCTTGGCGGATCCAGGAGCTGCCTCCTGTCTCTTGGTTTaGGGCTGGGAACAGGCAGGTCATGAAGGTTCTGGTACACAAACT +
Preference number: 5 (lower is better)
Translates to: SGRLADPGAASCLLV*GWEQAGHEGSGTQT
Trigger: AGTTTGTGTACCAGAACCTTCATGACCTGCCTGTTCCCAGCCCCAAACCAAGAGACAGGAGGCAGCTCCTGGATCCGCCAAGCGACCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp TTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTTGGGACAACCTTTGAGCAGCTGGGACTaGGAGTTGCTGCTGACATCC +
Preference number: 5 (lower is better)
Translates to: FQAGPQRTCVESASLGQPLSSWD*ELLLTS
Trigger: GGATGTCAGCAGCAACTCCAAGTCCCAGCTGCTCAA...AGGTTGTCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp ATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCCGGGTATGCAGCTCCTaGAGAAGCCCAGTGACCCAT +
Preference number: 5 (lower is better)
Translates to: ITKTFQAGPQRTCVESASRVCSS*RSPVTH
Trigger: ATGGGTCACTGGGCTTCTCAAGGAGCTGCATACCCG...GGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp CACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTCTCCTGTCTCTTGGTTaGGGGCTGGGAACAGGCAGG +
Preference number: 5 (lower is better)
Translates to: HFAAHHQNLPGWSTEDLCLLSLG*GLGTGR
Trigger: CCTGCCTGTTCCCAGCCCCAAACCAAGAGACAGGAG...ACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp CTTCACTCCATGAGCAGCAGGCACCAGCCAACTCCCAGGTGCCGGCCACAGCCTATGTTTTGGTTCTGGTaGGACAAGCCATTCCTGATG +
Preference number: 5 (lower is better)
Translates to: LHSMSSRHQPTPRCRPQPMFWFW*DKPFLM
Trigger: CATCAGGAATGGCTTGTCCAACCAGAACCAAAACAT...AGGCTGTGGCCGGCACCTGGGAGTTGGCTGGTGCCTGCTGCTCATGGAGTGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS TCA 90 bp CCAGGACGTGAGAGTGGTCTATCTTCAACACTGGGATCAGCCTGTTaGGGAAGCGCAGGTTCGTGTTCCGTTTCCCTCGGTAGGGACTCA +
Preference number: 5 (lower is better)
Translates to: PGRESGLSSTLGSAC*GSAGSCSVSLGRDS
Trigger: TGAGTCCCTACCGAGGGAAACGGAACACGAACCTGCGCTTCCTCAACAGGCTGATCCCAGTGTTGAAGATAGACCACTCTCACGTCCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 90 bp GGAGCCCAGTTCTTCATGCTGTCAAAACTGATCTGCAGGGAGTCCTaGAGGGTGAGCTTCTGTGCCTGGTATGTCTCCAGTCCCAACAGG +
Preference number: 5 (lower is better)
Translates to: GAQFFMLSKLICRES*RVSFCAWYVSSPNR
Trigger: CCTGTTGGGACTGGAGACATACCAGGCACAGAAGCTCACCCTCCAGGACTCCCTGCAGATCAGTTTTGACAGCATGAAGAACTGGGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000140922.2
ENSMUST00000170116.8
CDS CCA 90 bp GCTGCTGACCTTCACCAGGACGTGAGAGTGGTCTATCTTCAACACTaGGATCAGCCTGTTGAGGAAGCGCAGGTTCGTGTTCCGTTTCCC +
Preference number: 5 (lower is better)
Translates to: AADLHQDVRVVYLQH*DQPVEEAQVRVPFP
Trigger: GGGAAACGGAACACGAACCTGCGCTTCCTCAACAGGCTGATCCCAGTGTTGAAGATAGACCACTCTCACGTCCTGGTGAAGGTCAGCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 90 bp CGCTTGGCGGATCCAGGAGCTGCCTCCTGTCTCTTGGTTTGGGGCTaGGAACAGGCAGGTCATGAAGGTTCTGGTACACAAACTGATAGT +
Preference number: 5 (lower is better)
Translates to: RLADPGAASCLLVWG*EQAGHEGSGTQTDS
Trigger: ACTATCAGTTTGTGTACCAGAACCTTCATGACCTGCCTGTTCCCAGCCCCAAACCAAGAGACAGGAGGCAGCTCCTGGATCCGCCAAGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp GAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATGGTTGAGCAGCTGGGACTaGGAGTTGCTGCTGACATCC +
Preference number: 5 (lower is better)
Translates to: EINLLLTTPPRASGYSQWLSSWD*ELLLTS
Trigger: GGATGTCAGCAGCAACTCCAAGTCCCAGCTGCTCAA...CCATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp CAACTCCCAGGTGCCGGCCACAGCCTTACTGTCACAGCCTTACTGTCGTTACAGTCTCCATCCGGTCCTTaGCCTTCTGACACTCCTCAA +
Preference number: 5 (lower is better)
Translates to: QLPGAGHSLTVTALLSLQSPSGP*PSDTPQ
Trigger: TTGAGGAGTGTCAGAAGGCAAAGGACCGGATGGAGA...CTGTAACGACAGTAAGGCTGTGACAGTAAGGCTGTGGCCGGCACCTGGGAGTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp TTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTTGGGACAACCTTCTCCATCCGGTCCTTaGCCTTCTGACACTCCTCAA +
Preference number: 5 (lower is better)
Translates to: FQAGPQRTCVESASLGQPSPSGP*PSDTPQ
Trigger: TTGAGGAGTGTCAGAAGGCAAAGGACCGGATGGAGA...AGGTTGTCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp GGTAAGGAACAGAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTTCTCCATCCGGTCCTTaGCCTTCTGACACTCCTCAA +
Preference number: 5 (lower is better)
Translates to: GKEQRSTYCLPPHPGPRVSPSGP*PSDTPQ
Trigger: TTGAGGAGTGTCAGAAGGCAAAGGACCGGATGGAGA...AACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTCTGTTCCTTACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp AACTCACAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGGTGCGGGTATGCAGCTCCTaGAGAAGCCCAGTGACCCAT +
Preference number: 5 (lower is better)
Translates to: NSQSRGRQETHVTMCREVRVCSS*RSPVTH
Trigger: ATGGGTCACTGGGCTTCTCAAGGAGCTGCATACCCG...CACCTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTGTGAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp CACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTCGGGTATGCAGCTCCTaGAGAAGCCCAGTGACCCAT +
Preference number: 5 (lower is better)
Translates to: HFAAHHQNLPGWSTEDLCRVCSS*RSPVTH
Trigger: ATGGGTCACTGGGCTTCTCAAGGAGCTGCATACCCG...ACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp AGCAACTCACAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGCGGGTATGCAGCTCCTaGAGAAGCCCAGTGACCCAT +
Preference number: 5 (lower is better)
Translates to: SNSQSRGRQETHVTMCRERVCSS*RSPVTH
Trigger: ATGGGTCACTGGGCTTCTCAAGGAGCTGCATACCCG...CTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTGTGAGTTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 90 bp GCAGCCAGTGAGACCCAATGTCACCTCTCAAGTTCAGAAAGGCCATaGGCTCCGGGAAAACATCCAGGTCCTCCTTACCACTGGGGAAAA +
Preference number: 5 (lower is better)
Translates to: AASETQCHLSSSERP*APGKHPGPPYHWGK
Trigger: TTTTCCCCAGTGGTAAGGAGGACCTGGATGTTTTCCCGGAGCCCATGGCCTTTCTGAACTTGAGAGGTGACATTGGGTCTCACTGGCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp CAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGGTGCTGCGGTGTCCTGAGCCTCGTTaGTACCATCTCCATAATGGA +
Preference number: 5 (lower is better)
Translates to: QSRGRQETHVTMCREVLRCPEPR*YHLHNG
Trigger: TCCATTATGGAGATGGTACAAACGAGGCTCAGGACA...CCGCAGCACCTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp AGCAACTCACAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGTTGAGCAGCTGGGACTaGGAGTTGCTGCTGACATCC +
Preference number: 5 (lower is better)
Translates to: SNSQSRGRQETHVTMCRELSSWD*ELLLTS
Trigger: GGATGTCAGCAGCAACTCCAAGTCCCAGCTGCTCAA...CTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTGTGAGTTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp GGTAAGGAACAGAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTGGATTAGTGCCTAAATaGAGGTCCCGATGCCAGAAG +
Preference number: 5 (lower is better)
Translates to: GKEQRSTYCLPPHPGPRVGLVPK*RSRCQK
Trigger: CTTCTGGCATCGGGACCTCAATTTAGGCACTAATCC...AACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTCTGTTCCTTACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp GAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATGGTCTCCATCCGGTCCTTaGCCTTCTGACACTCCTCAA +
Preference number: 5 (lower is better)
Translates to: EINLLLTTPPRASGYSQWSPSGP*PSDTPQ
Trigger: TTGAGGAGTGTCAGAAGGCAAAGGACCGGATGGAGA...CCATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp TCTAGGCAGATCAGAGATCCTGCAAAGTTTCAGGATTGCTTTTCTCATCCGCACTCTCTGGAGGCTGTCTaGGCCGTGGCTGGCCAAGCC +
Preference number: 5 (lower is better)
Translates to: SRQIRDPAKFQDCFSHPHSLEAV*AVAGQA
Trigger: GGCTTGGCCAGCCACGGCCAAGACAGCCTCCAGAGA...GTGCGGATGAGAAAAGCAATCCTGAAACTTTGCAGGATCTCTGATCTGCCTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp AAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCCTTGGGAGGATTAGTGCCTAAATaGAGGTCCCGATGCCAGAAG +
Preference number: 5 (lower is better)
Translates to: KTFQAGPQRTCVESASLGGLVPK*RSRCQK
Trigger: CTTCTGGCATCGGGACCTCAATTTAGGCACTAATCC...TCCCAAGGAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp GCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACGGATTAGTGCCTAAATaGAGGTCCCGATGCCAGAAG +
Preference number: 5 (lower is better)
Translates to: ASHFAAHHQNLPGWSTEDGLVPK*RSRCQK
Trigger: CTTCTGGCATCGGGACCTCAATTTAGGCACTAATCC...GTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp TCATGGGTAAGGAACAGAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGATTAGTGCCTAAATaGAGGTCCCGATGCCAGAAG +
Preference number: 5 (lower is better)
Translates to: SWVRNRDQLTAYHPTPGLGLVPK*RSRCQK
Trigger: CTTCTGGCATCGGGACCTCAATTTAGGCACTAATCC...GAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTCTGTTCCTTACCCATGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp AAGAAAGGGTTCCAGATCAGAGAGCGCACAAGTACCCTGGAACCAAGGGCACCTTCTCCATCCGGTCCTTaGCCTTCTGACACTCCTCAA +
Preference number: 5 (lower is better)
Translates to: KKGFQIRERTSTLEPRAPSPSGP*PSDTPQ
Trigger: TTGAGGAGTGTCAGAAGGCAAAGGACCGGATGGAGA...AGGTGCCCTTGGTTCCAGGGTACTTGTGCGCTCTCTGATCTGGAACCCTTTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp GGCAGATCAGAGATCCTGCAAAGTTTCAGGATTGCTTTTCTCATCCGCACACGGCGGGTATGCAGCTCCTaGAGAAGCCCAGTGACCCAT +
Preference number: 5 (lower is better)
Translates to: GRSEILQSFRIAFLIRTRRVCSS*RSPVTH
Trigger: ATGGGTCACTGGGCTTCTCAAGGAGCTGCATACCCG...CCGTGTGCGGATGAGAAAAGCAATCCTGAAACTTTGCAGGATCTCTGATCTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp GTCCCTGACCAAGTAACTGTCTCAAACAGTGGCTCCATTGCTGCACTTTTCAGAGCTGCCTCCTGTCTCTaGGTTTGGGGCTGGGAACAG +
Preference number: 5 (lower is better)
Translates to: VPDQVTVSNSGSIAALFRAASCL*VWGWEQ
Trigger: CTGTTCCCAGCCCCAAACCAAGAGACAGGAGGCAGC...TCTGAAAAGTGCAGCAATGGAGCCACTGTTTGAGACAGTTACTTGGTCAGGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp ATCCTCCATCTCTCAAGTCCTGATACCACAGCTATGCACCACCATTCCCAGTATGCTGCCTCCTGTCTCTaGGTTTGGGGCTGGGAACAG +
Preference number: 5 (lower is better)
Translates to: ILHLSSPDTTAMHHHSQYAASCL*VWGWEQ
Trigger: CTGTTCCCAGCCCCAAACCAAGAGACAGGAGGCAGC...ATACTGGGAATGGTGGTGCATAGCTGTGGTATCAGGACTTGAGAGATGGAGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp TTTGCTGAATCTAGTAAAAGGACAAGACACAGGAGAGGTTCTCAGGCCATGGCCGCTGCCTCCTGTCTCTaGGTTTGGGGCTGGGAACAG +
Preference number: 5 (lower is better)
Translates to: FAESSKRTRHRRGSQAMAAASCL*VWGWEQ
Trigger: CTGTTCCCAGCCCCAAACCAAGAGACAGGAGGCAGC...GGCCATGGCCTGAGAACCTCTCCTGTGTCTTGTCCTTTTACTAGATTCAGCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS TCA 90 bp AACACAGCAGAGGAGACTTCTGTCAAGAGCTTGAACTGCAGCCAGTaGGACCCAATGTCACCTCTCAAGTTCAGAAAGGCCATGGGCTCC +
Preference number: 5 (lower is better)
Translates to: NTAEETSVKSLNCSQ*DPMSPLKFRKAMGS
Trigger: GGAGCCCATGGCCTTTCTGAACTTGAGAGGTGACATTGGGTCTCACTGGCTGCAGTTCAAGCTCTTGACAGAAGTCTCCTCTGCTGTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp GATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATGGTGTGTCCTGAGCCTCGTTaGTACCATCTCCATAATGGA +
Preference number: 5 (lower is better)
Translates to: DQLTAYHPTPGLGLFSMVCPEPR*YHLHNG
Trigger: TCCATTATGGAGATGGTACAAACGAGGCTCAGGACA...CACCATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp CTAGTAAAAGGACAAGACACAGGAGAGGTTCTCAGGCCATGGCCTGACTTCTCTTTGAGCAGCTGGGACTaGGAGTTGCTGCTGACATCC +
Preference number: 5 (lower is better)
Translates to: LVKGQDTGEVLRPWPDFSLSSWD*ELLLTS
Trigger: GGATGTCAGCAGCAACTCCAAGTCCCAGCTGCTCAA...AGAGAAGTCAGGCCATGGCCTGAGAACCTCTCCTGTGTCTTGTCCTTTTACTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp GCCAATGAAGGAGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGAGTAGTACTTTGTGGTaGACTCCTTCATGGAGTACA +
Preference number: 5 (lower is better)
Translates to: ANEGAATQRADCQELCHGSSTLW*TPSWST
Trigger: TGTACTCCATGAAGGAGTCAACCACAAAGTACTACT...CCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCTCCTTCATTGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp CAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGGTGCTGCGGAGTAGTACTTTGTGGTaGACTCCTTCATGGAGTACA +
Preference number: 5 (lower is better)
Translates to: QSRGRQETHVTMCREVLRSSTLW*TPSWST
Trigger: TGTACTCCATGAAGGAGTCAACCACAAAGTACTACT...CCGCAGCACCTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp TCTAGGCAGATCAGAGATCCTGCAAAGTTTCAGGATTGCTTTTCTCATCCGCACCTCCTGTCTCTTGGTTaGGGGCTGGGAACAGGCAGG +
Preference number: 5 (lower is better)
Translates to: SRQIRDPAKFQDCFSHPHLLSLG*GLGTGR
Trigger: CCTGCCTGTTCCCAGCCCCAAACCAAGAGACAGGAG...GTGCGGATGAGAAAAGCAATCCTGAAACTTTGCAGGATCTCTGATCTGCCTAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS GCA 90 bp AAAGGTGTGGTAGTGGTTTTCAGAATCGGGCAACACAAGTGGGAGTaGAAACTGACAGAGGGACATCTTCAGCAGGACTTCCTGCTGCAG +
Preference number: 5 (lower is better)
Translates to: KGVVVVFRIGQHKWE*KLTEGHLQQDFLLQ
Trigger: CTGCAGCAGGAAGTCCTGCTGAAGATGTCCCTCTGTCAGTTTGCACTCCCACTTGTGTTGCCCGATTCTGAAAACCACTACCACACCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS GCA 90 bp GTCCACATCCTTGATCTTCCTGAGGATTTTCTCCATCCGGTCCTTTaGCTTCTGACACTCCTCAAAGTCCTCATCAACTCTGAGGCCGAG +
Preference number: 5 (lower is better)
Translates to: VHILDLPEDFLHPVL*LLTLLKVLINSEAE
Trigger: CTCGGCCTCAGAGTTGATGAGGACTTTGAGGAGTGTCAGAAGGCAAAGGACCGGATGGAGAAAATCCTCAGGAAGATCAAGGATGTGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 90 bp GAGCAGAAAGGTGTGGTAGTGGTTTTCAGAATCGGGCAACACAAGTaGGAGTGCAAACTGACAGAGGGACATCTTCAGCAGGACTTCCTG +
Preference number: 5 (lower is better)
Translates to: EQKGVVVVFRIGQHK*ECKLTEGHLQQDFL
Trigger: CAGGAAGTCCTGCTGAAGATGTCCCTCTGTCAGTTTGCACTCCCACTTGTGTTGCCCGATTCTGAAAACCACTACCACACCTTTCTGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp CAACTCCCAGGTGCCGGCCACAGCCTTACTGTCACAGCCTTACTGTCGTTACAGAGTAGTACTTTGTGGTaGACTCCTTCATGGAGTACA +
Preference number: 5 (lower is better)
Translates to: QLPGAGHSLTVTALLSLQSSTLW*TPSWST
Trigger: TGTACTCCATGAAGGAGTCAACCACAAAGTACTACT...CTGTAACGACAGTAAGGCTGTGACAGTAAGGCTGTGGCCGGCACCTGGGAGTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp GCAGTGCCATGGCAGTGCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGATGTTTTGGTTCTGGTaGGACAAGCCATTCCTGATG +
Preference number: 5 (lower is better)
Translates to: AVPWQCLTLCCTSPKPSRMFWFW*DKPFLM
Trigger: CATCAGGAATGGCTTGTCCAACCAGAACCAAAACAT...CCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGCACTGCCATGGCACTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp TCATGGGTAAGGAACAGAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCATGTTTTGGTTCTGGTaGGACAAGCCATTCCTGATG +
Preference number: 5 (lower is better)
Translates to: SWVRNRDQLTAYHPTPGLMFWFW*DKPFLM
Trigger: CATCAGGAATGGCTTGTCCAACCAGAACCAAAACAT...GAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTCTGTTCCTTACCCATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS TCA 90 bp TCCTTGATCTTCCTGAGGATTTTCTCCATCCGGTCCTTTGCCTTCTaGCACTCCTCAAAGTCCTCATCAACTCTGAGGCCGAGCTTACGT +
Preference number: 5 (lower is better)
Translates to: SLIFLRIFSIRSFAF*HSSKSSSTLRPSLR
Trigger: ACGTAAGCTCGGCCTCAGAGTTGATGAGGACTTTGAGGAGTGTCAGAAGGCAAAGGACCGGATGGAGAAAATCCTCAGGAAGATCAAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp TCATGGGTAAGGAACAGAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCAGTAGTACTTTGTGGTaGACTCCTTCATGGAGTACA +
Preference number: 5 (lower is better)
Translates to: SWVRNRDQLTAYHPTPGLSSTLW*TPSWST
Trigger: TGTACTCCATGAAGGAGTCAACCACAAAGTACTACT...GAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTCTGTTCCTTACCCATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp CTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTAGTACTTTGTGGTaGACTCCTTCATGGAGTACA +
Preference number: 5 (lower is better)
Translates to: LCCTSPKPSRLVHRGPVWSSTLW*TPSWST
Trigger: TGTACTCCATGAAGGAGTCAACCACAAAGTACTACT...CCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp CAGAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATATGTTTTGGTTCTGGTaGGACAAGCCATTCCTGATG +
Preference number: 5 (lower is better)
Translates to: QRSTYCLPPHPGPRVILNMFWFW*DKPFLM
Trigger: CATCAGGAATGGCTTGTCCAACCAGAACCAAAACAT...ATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp GAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTATTCTCAATGGATTCCAAATCTGCAATaGCCACAGATGTTTGGCTGT +
Preference number: 5 (lower is better)
Translates to: EINLLLTTPPRASGYSQWIPNLQ*PQMFGC
Trigger: ACAGCCAAACATCTGTGGCAATTGCAGATTTGGAAT...CCATTGAGAATAACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000093362.12
CDS-3UTR CAA 90 bp GTCCCTGACCAAGTAACTGTCTCAAACAGTGGCTCCATTGCTGCACTTTTCAGAGGATTAGTGCCTAAATaGAGGTCCCGATGCCAGAAG +
Preference number: 5 (lower is better)
Translates to: VPDQVTVSNSGSIAALFRGLVPK*RSRCQK
Trigger: CTTCTGGCATCGGGACCTCAATTTAGGCACTAATCC...TCTGAAAAGTGCAGCAATGGAGCCACTGTTTGAGACAGTTACTTGGTCAGGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp GGTAAGGAACAGAGATCAACTTACTGCTTACCACCCCACCCCGGGCCTCGGGTTAGTTTGTATTCCTTCTaGCTGATGTTGTCAGTCAAA +
Preference number: 5 (lower is better)
Translates to: GKEQRSTYCLPPHPGPRVSLYSF*LMLSVK
Trigger: TTTGACTGACAACATCAGCAAGAAGGAATACAAACT...AACCCGAGGCCCGGGGTGGGGTGGTAAGCAGTAAGTTGATCTCTGTTCCTTACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp GTCCCTGACCAAGTAACTGTCTCAAACAGTGGCTCCATTGCTGCACTTTTCAGATGTCCTGAGCCTCGTTaGTACCATCTCCATAATGGA +
Preference number: 5 (lower is better)
Translates to: VPDQVTVSNSGSIAALFRCPEPR*YHLHNG
Trigger: TCCATTATGGAGATGGTACAAACGAGGCTCAGGACA...TCTGAAAAGTGCAGCAATGGAGCCACTGTTTGAGACAGTTACTTGGTCAGGGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp GCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACTCCTTCTTGCTGATGTaGTCAGTCAAAATAAACACA +
Preference number: 5 (lower is better)
Translates to: ASHFAAHHQNLPGWSTEDSFLLM*SVKINT
Trigger: TGTGTTTATTTTGACTGACAACATCAGCAAGAAGGA...GTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp CATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTGGAGTCTGCTTCTCCTTCTTGCTGATGTaGTCAGTCAAAATAAACACA +
Preference number: 5 (lower is better)
Translates to: HHQNLPGWSTEDLCGVCFSFLLM*SVKINT
Trigger: TGTGTTTATTTTGACTGACAACATCAGCAAGAAGGA...GAAGCAGACTCCACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp GCAGTGCCATGGCAGTGCCTCACACTTTGCTGCACATCACCAAAACCTTCCAGGAGTTTGTATTCCTTCTaGCTGATGTTGTCAGTCAAA +
Preference number: 5 (lower is better)
Translates to: AVPWQCLTLCCTSPKPSRSLYSF*LMLSVK
Trigger: TTTGACTGACAACATCAGCAAGAAGGAATACAAACT...CCTGGAAGGTTTTGGTGATGTGCAGCAAAGTGTGAGGCACTGCCATGGCACTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp AGCAGCTACCCAGAGGGCCGATTGCCAGGAGCTTTGTCATGGGTAAGGAACAGAAGTTTGTATTCCTTCTaGCTGATGTTGTCAGTCAAA +
Preference number: 5 (lower is better)
Translates to: SSYPEGRLPGALSWVRNRSLYSF*LMLSVK
Trigger: TTTGACTGACAACATCAGCAAGAAGGAATACAAACT...TCTGTTCCTTACCCATGACAAAGCTCCTGGCAATCGGCCCTCTGGGTAGCTGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS TCA 90 bp CCGTTTCCCTCGGTAGGGACTCAGGATGAAGTAGTACTTTGTGGTTaGCTCCTTCATGGAGTACAGCAGTTTGTATTCCTTCTTGCTGAT +
Preference number: 5 (lower is better)
Translates to: PFPSVGTQDEVVLCG*LLHGVQQFVFLLAD
Trigger: ATCAGCAAGAAGGAATACAAACTGCTGTACTCCATGAAGGAGTCAACCACAAAGTACTACTTCATCCTGAGTCCCTACCGAGGGAAACGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 90 bp CCTTCCATTTCTCTCCATTCCAAATCTGCAATTGCCACAGATGTTTaGCTGTCTGAAGGTTTTACTTCTGGGGCCACTTCTCCCAGATCT +
Preference number: 5 (lower is better)
Translates to: PSISLHSKSAIATDV*LSEGFTSGATSPRS
Trigger: AGATCTGGGAGAAGTGGCCCCAGAAGTAAAACCTTCAGACAGCCAAACATCTGTGGCAATTGCAGATTTGGAATGGAGAGAAATGGAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000093362.12
CDS-3UTR CAA 90 bp AAGAAAGGGTTCCAGATCAGAGAGCGCACAAGTACCCTGGAACCAAGGGCACCTTCCTTCTTGCTGATGTaGTCAGTCAAAATAAACACA +
Preference number: 5 (lower is better)
Translates to: KKGFQIRERTSTLEPRAPSFLLM*SVKINT
Trigger: TGTGTTTATTTTGACTGACAACATCAGCAAGAAGGA...AGGTGCCCTTGGTTCCAGGGTACTTGTGCGCTCTCTGATCTGGAACCCTTTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp CACTTTGCTGCACATCACCAAAACCTTCCAGGCTGGTCCACAGAGGACCTGTGTTCCTTCTTGCTGATGTaGTCAGTCAAAATAAACACA +
Preference number: 5 (lower is better)
Translates to: HFAAHHQNLPGWSTEDLCSFLLM*SVKINT
Trigger: TGTGTTTATTTTGACTGACAACATCAGCAAGAAGGA...ACACAGGTCCTCTGTGGACCAGCCTGGAAGGTTTTGGTGATGTGCAGCAAAGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp AAGAAAGGGTTCCAGATCAGAGAGCGCACAAGTACCCTGGAACCAAGGGCACCTAGTTTGTATTCCTTCTaGCTGATGTTGTCAGTCAAA +
Preference number: 5 (lower is better)
Translates to: KKGFQIRERTSTLEPRAPSLYSF*LMLSVK
Trigger: TTTGACTGACAACATCAGCAAGAAGGAATACAAACT...AGGTGCCCTTGGTTCCAGGGTACTTGTGCGCTCTCTGATCTGGAACCCTTTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp AACTCACAGTCTAGGGGCAGACAGGAAACACACGTGACAATGTGCCGTGAGGTGAGTTTGTATTCCTTCTaGCTGATGTTGTCAGTCAAA +
Preference number: 5 (lower is better)
Translates to: NSQSRGRQETHVTMCREVSLYSF*LMLSVK
Trigger: TTTGACTGACAACATCAGCAAGAAGGAATACAAACT...CACCTCACGGCACATTGTCACGTGTGTTTCCTGTCTGCCCCTAGACTGTGAGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS-3UTR CAA 90 bp GAATCAGCAAGTTATTTTAACATTCTAGGCAGATCAGAGATCCTGCAAAGTTTCTGTCCTGAGCCTCGTTaGTACCATCTCCATAATGGA +
Preference number: 5 (lower is better)
Translates to: ESASYFNILGRSEILQSFCPEPR*YHLHNG
Trigger: TCCATTATGGAGATGGTACAAACGAGGCTCAGGACA...GAAACTTTGCAGGATCTCTGATCTGCCTAGAATGTTAAAATAACTTGCTGATTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000170116.8
CDS GCA 72 bp GCTCCATGCCACAAGGCTGGGATGTGCCAGACGTGCTaGCTCTCGGCCAGGCCCGCCAGTGTCCGGAAGCCG +
Preference number: 6 (lower is better)
Translates to: APCHKAGMCQTC*LSARPASVRKP
Trigger: CGGCTTCCGGACACTGGCGGGCCTGGCCGAGAGGCAGCACGTCTGGCACATCCCAGCCTTGTGGCATGGAGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS GCA 72 bp GGCGCTCCATGCCACAAGGCTGGGATGTGCCAGACGTaGTGCCTCTCGGCCAGGCCCGCCAGTGTCCGGAAG +
Preference number: 6 (lower is better)
Translates to: GAPCHKAGMCQT*CLSARPASVRK
Trigger: CTTCCGGACACTGGCGGGCCTGGCCGAGAGGCAGCACGTCTGGCACATCCCAGCCTTGTGGCATGGAGCGCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 72 bp TCCACAGCCACACCCGGGAAGTGGGCAAAGCGCCTCTaGCCAGCGGGCAGCCTCCCTGCCTCGATCAGGCAG +
Preference number: 6 (lower is better)
Translates to: STATPGKWAKRL*PAGSLPASIRQ
Trigger: CTGCCTGATCGAGGCAGGGAGGCTGCCCGCTGGCCAGAGGCGCTTTGCCCACTTCCCGGGTGTGGCTGTGGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 72 bp CCACCCAGCAGCAGTTCCACAGCCACACCCGGGAAGTaGGCAAAGCGCCTCTGGCCAGCGGGCAGCCTCCCT +
Preference number: 6 (lower is better)
Translates to: PPSSSSTATPGK*AKRLWPAGSLP
Trigger: AGGGAGGCTGCCCGCTGGCCAGAGGCGCTTTGCCCACTTCCCGGGTGTGGCTGTGGAACTGCTGCTGGGTGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 72 bp CACAGCGGCCATGGGTGGCGCTCCATGCCACAAGGCTaGGATGTGCCAGACGTGCTGCCTCTCGGCCAGGCC +
Preference number: 6 (lower is better)
Translates to: HSGHGWRSMPQG*DVPDVLPLGQA
Trigger: GGCCTGGCCGAGAGGCAGCACGTCTGGCACATCCCAGCCTTGTGGCATGGAGCGCCACCCATGGCCGCTGTG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CAA 72 bp CGGGACCCACTGGAGCTGGCAGAACTCTCTTTCAGCTaGGGCGGCCCTCCTCGCAGGCTCGCCCTGCAGCCG +
Preference number: 6 (lower is better)
Translates to: RDPLELAELSFS*GGPPRRLALQP
Trigger: CGGCTGCAGGGCGAGCCTGCGAGGAGGGCCGCCCAAGCTGAAAGAGAGTTCTGCCAGCTCCAGTGGGTCCCG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS GCA 72 bp TCCTGGACCCCTGAGGTGGGCTCCTGGCCATTCTGCTaGACCCGGAGCTCAAGGACGCGCCGTCTCAGCTCG +
Preference number: 6 (lower is better)
Translates to: SWTPEVGSWPFC*TRSSRTRRLSS
Trigger: CGAGCTGAGACGGCGCGTCCTTGAGCTCCGGGTGCAGCAGAATGGCCAGGAGCCCACCTCAGGGGTCCAGGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS GCA 72 bp TCGGCCAGGCCCGCCAGTGTCCGGAAGCCGCCGCCCTaGTTTTCCAAGTGGGTAGCCCTGCTCAGGTCGCTT +
Preference number: 6 (lower is better)
Translates to: SARPASVRKPPP*FSKWVALLRSL
Trigger: AAGCGACCTGAGCAGGGCTACCCACTTGGAAAAGCAGGGCGGCGGCTTCCGGACACTGGCGGGCCTGGCCGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS GCA 72 bp AACTCCTGGACCCCTGAGGTGGGCTCCTGGCCATTCTaGTGCACCCGGAGCTCAAGGACGCGCCGTCTCAGC +
Preference number: 6 (lower is better)
Translates to: NSWTPEVGSWPF*CTRSSRTRRLS
Trigger: GCTGAGACGGCGCGTCCTTGAGCTCCGGGTGCAGCAGAATGGCCAGGAGCCCACCTCAGGGGTCCAGGAGTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 72 bp TGGCGGCGGGCCGGGCTGAGGACGGCATTGAGCAGCTaGGACTTGGAGTTGCTGCTGACATCCATGCGCACG +
Preference number: 6 (lower is better)
Translates to: WRRAGLRTALSS*DLELLLTSMRT
Trigger: CGTGCGCATGGATGTCAGCAGCAACTCCAAGTCCCAGCTGCTCAATGCCGTCCTCAGCCCGGCCCGCCGCCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 72 bp GCCAGTGTCCGGAAGCCGCCGCCCTGCTTTTCCAAGTaGGTAGCCCTGCTCAGGTCGCTTGGCGGATCCAGG +
Preference number: 6 (lower is better)
Translates to: ASVRKPPPCFSK*VALLRSLGGSR
Trigger: CCTGGATCCGCCAAGCGACCTGAGCAGGGCTACCCACTTGGAAAAGCAGGGCGGCGGCTTCCGGACACTGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CAA 90 bp CGGCGGGCCGGGCTGAGGACGGCATTGAGCAGCTGGGACTTGGAGTaGCTGCTGACATCCATGCGCACGAAGGCAAACGTGGGCACCCTG +
Preference number: 6 (lower is better)
Translates to: RRAGLRTALSSWDLE*LLTSMRTKANVGTL
Trigger: CAGGGTGCCCACGTTTGCCTTCGTGCGCATGGATGTCAGCAGCAACTCCAAGTCCCAGCTGCTCAATGCCGTCCTCAGCCCGGCCCGCCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CAA 90 bp CACTGGCGGCGGGCCGGGCTGAGGACGGCATTGAGCAGCTGGGACTaGGAGTTGCTGCTGACATCCATGCGCACGAAGGCAAACGTGGGC +
Preference number: 6 (lower is better)
Translates to: HWRRAGLRTALSSWD*ELLLTSMRTKANVG
Trigger: GCCCACGTTTGCCTTCGTGCGCATGGATGTCAGCAGCAACTCCAAGTCCCAGCTGCTCAATGCCGTCCTCAGCCCGGCCCGCCGCCAGTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CAA 90 bp TGCCAGAAGCAGTCCCACTGGCGGCGGGCCGGGCTGAGGACGGCATaGAGCAGCTGGGACTTGGAGTTGCTGCTGACATCCATGCGCACG +
Preference number: 6 (lower is better)
Translates to: CQKQSHWRRAGLRTA*SSWDLELLLTSMRT
Trigger: CGTGCGCATGGATGTCAGCAGCAACTCCAAGTCCCAGCTGCTCAATGCCGTCCTCAGCCCGGCCCGCCGCCAGTGGGACTGCTTCTGGCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS GCA 72 bp GTGGGCAAAGCGCCTCTGGCCAGCGGGCAGCCTCCCTaGCTCGATCAGGCAGCTCTCCGCTTCATAGAACTG +
Preference number: 6 (lower is better)
Translates to: VGKAPLASGQPP*LDQAALRFIEL
Trigger: CAGTTCTATGAAGCGGAGAGCTGCCTGATCGAGGCAGGGAGGCTGCCCGCTGGCCAGAGGCGCTTTGCCCAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 72 bp CCTAAATTGAGGTCCCGATGCCAGAAGCAGTCCCACTaGCGGCGGGCCGGGCTGAGGACGGCATTGAGCAGC +
Preference number: 6 (lower is better)
Translates to: PKLRSRCQKQSH*RRAGLRTALSS
Trigger: GCTGCTCAATGCCGTCCTCAGCCCGGCCCGCCGCCAGTGGGACTGCTTCTGGCATCGGGACCTCAATTTAGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 72 bp TGGTCTGAGGGTGAGAAGGGTCTCTGGAGGCTGTCTTaGCCGTGGCTGGCCAAGCCGAGCCAAGCCCCACTC +
Preference number: 6 (lower is better)
Translates to: WSEGEKGLWRLS*PWLAKPSQAPL
Trigger: GAGTGGGGCTTGGCTCGGCTTGGCCAGCCACGGCCAAGACAGCCTCCAGAGACCCTTCTCACCCTCAGACCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 72 bp GGCCTCACTGTAGCCCAAGCTCACAGCGGCCATGGGTaGCGCTCCATGCCACAAGGCTGGGATGTGCCAGAC +
Preference number: 6 (lower is better)
Translates to: GLTVAQAHSGHG*RSMPQGWDVPD
Trigger: GTCTGGCACATCCCAGCCTTGTGGCATGGAGCGCCACCCATGGCCGCTGTGAGCTTGGGCTACAGTGAGGCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS GCA 72 bp GTAGCCCTGCTCAGGTCGCTTGGCGGATCCAGGAGCTaGCTCCTGTCTCTTGGTTTGGGGCTGGGAACAGGC +
Preference number: 6 (lower is better)
Translates to: VALLRSLGGSRS*LLSLGLGLGTG
Trigger: GCCTGTTCCCAGCCCCAAACCAAGAGACAGGAGGCAGCTCCTGGATCCGCCAAGCGACCTGAGCAGGGCTAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS GCA 72 bp ATCTCGCGAGGATTAGTGCCTAAATTGAGGTCCCGATaGCAGAAGCAGTCCCACTGGCGGCGGGCCGGGCTG +
Preference number: 6 (lower is better)
Translates to: ISRGLVPKLRSR*QKQSHWRRAGL
Trigger: CAGCCCGGCCCGCCGCCAGTGGGACTGCTTCTGGCATCGGGACCTCAATTTAGGCACTAATCCTCGCGAGAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 72 bp CCCACCAAGTTTTGGTCTGAGGGTGAGAAGGGTCTCTaGAGGCTGTCTTGGCCGTGGCTGGCCAAGCCGAGC +
Preference number: 6 (lower is better)
Translates to: PTKFWSEGEKGL*RLSWPWLAKPS
Trigger: GCTCGGCTTGGCCAGCCACGGCCAAGACAGCCTCCAGAGACCCTTCTCACCCTCAGACCAAAACTTGGTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 72 bp AAATGGCCTCACTGTAGCCCAAGCTCACAGCGGCCATaGGTGGCGCTCCATGCCACAAGGCTGGGATGTGCC +
Preference number: 6 (lower is better)
Translates to: KWPHCSPSSQRP*VALHATRLGCA
Trigger: GGCACATCCCAGCCTTGTGGCATGGAGCGCCACCCATGGCCGCTGTGAGCTTGGGCTACAGTGAGGCCATTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CAA 90 bp TCTGGAGGCACGTCCAGCACCATGGTGGTGTTCCTGGCTTCGGCGTaGAGTGCCTGCAGCTTCCTGAGGAAATGCCAGGGAAGGTCCTTG +
Preference number: 6 (lower is better)
Translates to: SGGTSSTMVVFLASA*SACSFLRKCQGRSL
Trigger: CAAGGACCTTCCCTGGCATTTCCTCAGGAAGCTGCAGGCACTCAACGCCGAAGCCAGGAACACCACCATGGTGCTGGACGTGCCTCCAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000140922.2
ENSMUST00000170116.8
CDS CAA 90 bp CCCTGCTCAGGTCGCTTGGCGGATCCAGGAGCTGCCTCCTGTCTCTaGGTTTGGGGCTGGGAACAGGCAGGTCATGAAGGTTCTGGTACA +
Preference number: 6 (lower is better)
Translates to: PCSGRLADPGAASCL*VWGWEQAGHEGSGT
Trigger: TGTACCAGAACCTTCATGACCTGCCTGTTCCCAGCCCCAAACCAAGAGACAGGAGGCAGCTCCTGGATCCGCCAAGCGACCTGAGCAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS TCA 72 bp CAGGGGGTTCACAGGCGTATCAGGCATGGGCAGCTCTaGGAAAGAGTAGATGTCAGCAGCGACGTCCTCCGC +
Preference number: 6 (lower is better)
Translates to: QGVHRRIRHGQL*ERVDVSSDVLR
Trigger: GCGGAGGACGTCGCTGCTGACATCTACTCTTTCTCAGAGCTGCCCATGCCTGATACGCCTGTGAACCCCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS TCA 72 bp GGATGCGCCTCACGAAGCCCTCGCTGTCCGTGCTGCTaGCCTTCACCAGGACGTGAGAGTGGTCTATCTTCA +
Preference number: 6 (lower is better)
Translates to: GCASRSPRCPCC*PSPGRESGLSS
Trigger: TGAAGATAGACCACTCTCACGTCCTGGTGAAGGTCAGCAGCACGGACAGCGAGGGCTTCGTGAGGCGCATCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS TCA 72 bp TCCCAAGGGCTCAGGCCAGAGTGGCTCCGTCAAGTCTaGGGGCCCACCAAGTTTTGGTCTGAGGGTGAGAAG +
Preference number: 6 (lower is better)
Translates to: SQGLRPEWLRQV*GPTKFWSEGEK
Trigger: CTTCTCACCCTCAGACCAAAACTTGGTGGGCCCTCAGACTTGACGGAGCCACTCTGGCCTGAGCCCTTGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS GCA 72 bp CAGCACCATGGTGGTGTTCCTGGCTTCGGCGTTGAGTaGCTGCAGCTTCCTGAGGAAATGCCAGGGAAGGTC +
Preference number: 6 (lower is better)
Translates to: QHHGGVPGFGVE*LQLPEEMPGKV
Trigger: GACCTTCCCTGGCATTTCCTCAGGAAGCTGCAGGCACTCAACGCCGAAGCCAGGAACACCACCATGGTGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000140922.2
ENSMUST00000170116.8
CDS CAA 72 bp ACGTCCAGCACCATGGTGGTGTTCCTGGCTTCGGCGTaGAGTGCCTGCAGCTTCCTGAGGAAATGCCAGGGA +
Preference number: 6 (lower is better)
Translates to: TSSTMVVFLASA*SACSFLRKCQG
Trigger: TCCCTGGCATTTCCTCAGGAAGCTGCAGGCACTCAACGCCGAAGCCAGGAACACCACCATGGTGCTGGACGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000140922.2
ENSMUST00000170116.8
CDS CAA 72 bp GGGCTGAGGACGGCATTGAGCAGCTGGGACTTGGAGTaGCTGCTGACATCCATGCGCACGAAGGCAAACGTG +
Preference number: 6 (lower is better)
Translates to: GLRTALSSWDLE*LLTSMRTKANV
Trigger: CACGTTTGCCTTCGTGCGCATGGATGTCAGCAGCAACTCCAAGTCCCAGCTGCTCAATGCCGTCCTCAGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CAA 90 bp ATCTCTACTAACCCATCCGAGATCTCGCGAGGATTAGTGCCTAAATaGAGGTCCCGATGCCAGAAGCAGTCCCACTGGCGGCGGGCCGGG +
Preference number: 6 (lower is better)
Translates to: ISTNPSEISRGLVPK*RSRCQKQSHWRRAG
Trigger: CCCGGCCCGCCGCCAGTGGGACTGCTTCTGGCATCGGGACCTCAATTTAGGCACTAATCCTCGCGAGATCTCGGATGGGTTAGTAGAGAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS TCA 72 bp CCCTCGCTGTCCGTGCTGCTGACCTTCACCAGGACGTaGGAGTGGTCTATCTTCAACACTGGGATCAGCCTG +
Preference number: 6 (lower is better)
Translates to: PSLSVLLTFTRT*EWSIFNTGISL
Trigger: CAGGCTGATCCCAGTGTTGAAGATAGACCACTCTCACGTCCTGGTGAAGGTCAGCAGCACGGACAGCGAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS GCA 72 bp ACCATGGTGGTGTTCCTGGCTTCGGCGTTGAGTGCCTaGAGCTTCCTGAGGAAATGCCAGGGAAGGTCCTTG +
Preference number: 6 (lower is better)
Translates to: TMVVFLASALSA*SFLRKCQGRSL
Trigger: CAAGGACCTTCCCTGGCATTTCCTCAGGAAGCTGCAGGCACTCAACGCCGAAGCCAGGAACACCACCATGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000140922.2
ENSMUST00000170116.8
CDS GCA 72 bp CTCAAAGTCCTCATCAACTCTGAGGCCGAGCTTACGTaGCGCGTGTGCCATGTCCTCCACAGACACCCTCCT +
Preference number: 6 (lower is better)
Translates to: LKVLINSEAELT*RVCHVLHRHPP
Trigger: AGGAGGGTGTCTGTGGAGGACATGGCACACGCGGCACGTAAGCTCGGCCTCAGAGTTGATGAGGACTTTGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 72 bp ATCTGCAGGGAGTCCTGGAGGGTGAGCTTCTGTGCCTaGTATGTCTCCAGTCCCAACAGGGACAGCATCTCC +
Preference number: 6 (lower is better)
Translates to: ICRESWRVSFCA*YVSSPNRDSIS
Trigger: GGAGATGCTGTCCCTGTTGGGACTGGAGACATACCAGGCACAGAAGCTCACCCTCCAGGACTCCCTGCAGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000140922.2
ENSMUST00000170116.8
CDS TCA 72 bp CATCTTCAGCAGGACTTCCTGCTGCAGAAAGGTGTCTaGAGACAGCAGGAGGGCGCAGAGAAGATCCAGGGG +
Preference number: 6 (lower is better)
Translates to: HLQQDFLLQKGV*RQQEGAEKIQG
Trigger: CCCCTGGATCTTCTCTGCGCCCTCCTGCTGTCTTCAGACACCTTTCTGCAGCAGGAAGTCCTGCTGAAGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CAA 72 bp AACCCATCCGAGATCTCGCGAGGATTAGTGCCTAAATaGAGGTCCCGATGCCAGAAGCAGTCCCACTGGCGG +
Preference number: 6 (lower is better)
Translates to: NPSEISRGLVPK*RSRCQKQSHWR
Trigger: CCGCCAGTGGGACTGCTTCTGGCATCGGGACCTCAATTTAGGCACTAATCCTCGCGAGATCTCGGATGGGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS TCA 72 bp TTGCCTTCTGACACTCCTCAAAGTCCTCATCAACTCTaGGGCCGAGCTTACGTGCCGCGTGTGCCATGTCCT +
Preference number: 6 (lower is better)
Translates to: LPSDTPQSPHQL*GRAYVPRVPCP
Trigger: AGGACATGGCACACGCGGCACGTAAGCTCGGCCTCAGAGTTGATGAGGACTTTGAGGAGTGTCAGAAGGCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS TCA 72 bp CTTCTGGGGCCACTTCTCCCAGATCTGAATGCCCTTTaGCCAGTAATTCCACTTCTATCCCCGGCGACGCCA +
Preference number: 6 (lower is better)
Translates to: LLGPLLPDLNAL*PVIPLLSPATP
Trigger: TGGCGTCGCCGGGGATAGAAGTGGAATTACTGGTCAAAGGGCATTCAGATCTGGGAGAAGTGGCCCCAGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000093362.12
CDS GCA 72 bp AGAACCACTAGCCGAGATCTCCTGTCTAGGCGGGTATaGAGCTCCTTGAGAAGCCCAGTGACCCATCGAACA +
Preference number: 6 (lower is better)
Translates to: RTTSRDLLSRRV*SSLRSPVTHRT
Trigger: TGTTCGATGGGTCACTGGGCTTCTCAAGGAGCTGCATACCCGCCTAGACAGGAGATCTCGGCTAGTGGTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 72 bp GATCCAGGAGCTGCCTCCTGTCTCTTGGTTTGGGGCTaGGAACAGGCAGGTCATGAAGGTTCTGGTACACAA +
Preference number: 6 (lower is better)
Translates to: DPGAASCLLVWG*EQAGHEGSGTQ
Trigger: TTGTGTACCAGAACCTTCATGACCTGCCTGTTCCCAGCCCCAAACCAAGAGACAGGAGGCAGCTCCTGGATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS TCA 72 bp TGGTATGTCTCCAGTCCCAACAGGGACAGCATCTCCTaGAGCCTGCTTCTCTCCACTGTGGGGAAGTCATTG +
Preference number: 6 (lower is better)
Translates to: WYVSSPNRDSIS*SLLLSTVGKSL
Trigger: CAATGACTTCCCCACAGTGGAGAGAAGCAGGCTTCAGGAGATGCTGTCCCTGTTGGGACTGGAGACATACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000140922.2
ENSMUST00000170116.8
CDS TCA 72 bp GAGAGTGGTCTATCTTCAACACTGGGATCAGCCTGTTaGGGAAGCGCAGGTTCGTGTTCCGTTTCCCTCGGT +
Preference number: 6 (lower is better)
Translates to: ESGLSSTLGSAC*GSAGSCSVSLG
Trigger: ACCGAGGGAAACGGAACACGAACCTGCGCTTCCTCAACAGGCTGATCCCAGTGTTGAAGATAGACCACTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 72 bp AGAGAAGATCCAGGGGGTTCACAGGCGTATCAGGCATaGGCAGCTCTGAGAAAGAGTAGATGTCAGCAGCGA +
Preference number: 6 (lower is better)
Translates to: REDPGGSQAYQA*AALRKSRCQQR
Trigger: TCGCTGCTGACATCTACTCTTTCTCAGAGCTGCCCATGCCTGATACGCCTGTGAACCCCCTGGATCTTCTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 72 bp TGGGCTCCGGGAAAACATCCAGGTCCTCCTTACCACTaGGGAAAAACCAGGAGATCTCTACTAACCCATCCG +
Preference number: 6 (lower is better)
Translates to: WAPGKHPGPPYH*GKTRRSLLTHP
Trigger: CGGATGGGTTAGTAGAGATCTCCTGGTTTTTCCCCAGTGGTAAGGAGGACCTGGATGTTTTCCCGGAGCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 72 bp GAGACCCAATGTCACCTCTCAAGTTCAGAAAGGCCATaGGCTCCGGGAAAACATCCAGGTCCTCCTTACCAC +
Preference number: 6 (lower is better)
Translates to: ETQCHLSSSERP*APGKHPGPPYH
Trigger: GTGGTAAGGAGGACCTGGATGTTTTCCCGGAGCCCATGGCCTTTCTGAACTTGAGAGGTGACATTGGGTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 72 bp CTTCACCAGGACGTGAGAGTGGTCTATCTTCAACACTaGGATCAGCCTGTTGAGGAAGCGCAGGTTCGTGTT +
Preference number: 6 (lower is better)
Translates to: LHQDVRVVYLQH*DQPVEEAQVRV
Trigger: AACACGAACCTGCGCTTCCTCAACAGGCTGATCCCAGTGTTGAAGATAGACCACTCTCACGTCCTGGTGAAG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CAA 90 bp GCCTGCTTCTCTCCACTGTGGGGAAGTCATTGTCCTGAGCCTCGTTaGTACCATCTCCATAATGGAACCCGCAGTCATCTCCTTCCATTT +
Preference number: 6 (lower is better)
Translates to: ACFSPLWGSHCPEPR*YHLHNGTRSHLLPF
Trigger: AAATGGAAGGAGATGACTGCGGGTTCCATTATGGAGATGGTACAAACGAGGCTCAGGACAATGACTTCCCCACAGTGGAGAGAAGCAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093362.12
CDS TCA 72 bp TTTTCAGAATCGGGCAACACAAGTGGGAGTGCAAACTaGCAGAGGGACATCTTCAGCAGGACTTCCTGCTGC +
Preference number: 6 (lower is better)
Translates to: FSESGNTSGSAN*QRDIFSRTSCC
Trigger: GCAGCAGGAAGTCCTGCTGAAGATGTCCCTCTGTCAGTTTGCACTCCCACTTGTGTTGCCCGATTCTGAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS TCA 72 bp GAGGAGACTTCTGTCAAGAGCTTGAACTGCAGCCAGTaGGACCCAATGTCACCTCTCAAGTTCAGAAAGGCC +
Preference number: 6 (lower is better)
Translates to: EETSVKSLNCSQ*DPMSPLKFRKA
Trigger: GGCCTTTCTGAACTTGAGAGGTGACATTGGGTCTCACTGGCTGCAGTTCAAGCTCTTGACAGAAGTCTCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 72 bp TTCTTCATGCTGTCAAAACTGATCTGCAGGGAGTCCTaGAGGGTGAGCTTCTGTGCCTGGTATGTCTCCAGT +
Preference number: 6 (lower is better)
Translates to: FFMLSKLICRES*RVSFCAWYVSS
Trigger: ACTGGAGACATACCAGGCACAGAAGCTCACCCTCCAGGACTCCCTGCAGATCAGTTTTGACAGCATGAAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000140922.2
ENSMUST00000170116.8
CDS CCA 72 bp GGTGTGGTAGTGGTTTTCAGAATCGGGCAACACAAGTaGGAGTGCAAACTGACAGAGGGACATCTTCAGCAG +
Preference number: 6 (lower is better)
Translates to: GVVVVFRIGQHK*ECKLTEGHLQQ
Trigger: CTGCTGAAGATGTCCCTCTGTCAGTTTGCACTCCCACTTGTGTTGCCCGATTCTGAAAACCACTACCACACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CAA 72 bp TCTCCACTGTGGGGAAGTCATTGTCCTGAGCCTCGTTaGTACCATCTCCATAATGGAACCCGCAGTCATCTC +
Preference number: 6 (lower is better)
Translates to: SPLWGSHCPEPR*YHLHNGTRSHL
Trigger: GAGATGACTGCGGGTTCCATTATGGAGATGGTACAAACGAGGCTCAGGACAATGACTTCCCCACAGTGGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000140922.2
ENSMUST00000170116.8
CDS CAA 72 bp CAGCCTGCGCAGCAGCTCAATGAGCTGCTGGATGTTTaGGTTCTGGTTGGACAAGCCATTCCTGATGTTTTC +
Preference number: 6 (lower is better)
Translates to: QPAQQLNELLDV*VLVGQAIPDVF
Trigger: GAAAACATCAGGAATGGCTTGTCCAACCAGAACCAAAACATCCAGCAGCTCATTGAGCTGCTGCGCAGGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS GCA 72 bp GTAGTGGTTTTCAGAATCGGGCAACACAAGTGGGAGTaGAAACTGACAGAGGGACATCTTCAGCAGGACTTC +
Preference number: 6 (lower is better)
Translates to: VVVFRIGQHKWE*KLTEGHLQQDF
Trigger: GAAGTCCTGCTGAAGATGTCCCTCTGTCAGTTTGCACTCCCACTTGTGTTGCCCGATTCTGAAAACCACTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 72 bp AGCCTGCGCAGCAGCTCAATGAGCTGCTGGATGTTTTaGTTCTGGTTGGACAAGCCATTCCTGATGTTTTCT +
Preference number: 6 (lower is better)
Translates to: SLRSSSMSCWMF*FWLDKPFLMFS
Trigger: AGAAAACATCAGGAATGGCTTGTCCAACCAGAACCAAAACATCCAGCAGCTCATTGAGCTGCTGCGCAGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CAA 90 bp ACCCGCAGTCATCTCCTTCCATTTCTCTCCATTCCAAATCTGCAATaGCCACAGATGTTTGGCTGTCTGAAGGTTTTACTTCTGGGGCCA +
Preference number: 6 (lower is better)
Translates to: TRSHLLPFLSIPNLQ*PQMFGCLKVLLLGP
Trigger: TGGCCCCAGAAGTAAAACCTTCAGACAGCCAAACATCTGTGGCAATTGCAGATTTGGAATGGAGAGAAATGGAAGGAGATGACTGCGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000093362.12
CDS TCA 72 bp TTCCAAATCTGCAATTGCCACAGATGTTTGGCTGTCTaGAGGTTTTACTTCTGGGGCCACTTCTCCCAGATC +
Preference number: 6 (lower is better)
Translates to: FQICNCHRCLAV*RFYFWGHFSQI
Trigger: GATCTGGGAGAAGTGGCCCCAGAAGTAAAACCTTCAGACAGCCAAACATCTGTGGCAATTGCAGATTTGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000093362.12
CDS GCA 72 bp CTTGATCTTCCTGAGGATTTTCTCCATCCGGTCCTTTaGCTTCTGACACTCCTCAAAGTCCTCATCAACTCT +
Preference number: 6 (lower is better)
Translates to: LDLPEDFLHPVL*LLTLLKVLINS
Trigger: AGAGTTGATGAGGACTTTGAGGAGTGTCAGAAGGCAAAGGACCGGATGGAGAAAATCCTCAGGAAGATCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CCA 72 bp TCTCTCCATTCCAAATCTGCAATTGCCACAGATGTTTaGCTGTCTGAAGGTTTTACTTCTGGGGCCACTTCT +
Preference number: 6 (lower is better)
Translates to: SLHSKSAIATDV*LSEGFTSGATS
Trigger: AGAAGTGGCCCCAGAAGTAAAACCTTCAGACAGCCAAACATCTGTGGCAATTGCAGATTTGGAATGGAGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000093362.12
CDS TCA 72 bp TCGGTAGGGACTCAGGATGAAGTAGTACTTTGTGGTTaGCTCCTTCATGGAGTACAGCAGTTTGTATTCCTT +
Preference number: 6 (lower is better)
Translates to: SVGTQDEVVLCG*LLHGVQQFVFL
Trigger: AAGGAATACAAACTGCTGTACTCCATGAAGGAGTCAACCACAAAGTACTACTTCATCCTGAGTCCCTACCGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CAA 90 bp GACTCCTTCATGGAGTACAGCAGTTTGTATTCCTTCTTGCTGATGTaGTCAGTCAAAATAAACACAGCAGAGGAGACTTCTGTCAAGAGC +
Preference number: 6 (lower is better)
Translates to: DSFMEYSSLYSFLLM*SVKINTAEETSVKS
Trigger: GCTCTTGACAGAAGTCTCCTCTGCTGTGTTTATTTTGACTGACAACATCAGCAAGAAGGAATACAAACTGCTGTACTCCATGAAGGAGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CAA 72 bp GACTCCTTCATGGAGTACAGCAGTTTGTATTCCTTCTaGCTGATGTTGTCAGTCAAAATAAACACAGCAGAG +
Preference number: 6 (lower is better)
Translates to: DSFMEYSSLYSF*LMLSVKINTAE
Trigger: CTCTGCTGTGTTTATTTTGACTGACAACATCAGCAAGAAGGAATACAAACTGCTGTACTCCATGAAGGAGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CAA 72 bp CATCTCCTTCCATTTCTCTCCATTCCAAATCTGCAATaGCCACAGATGTTTGGCTGTCTGAAGGTTTTACTT +
Preference number: 6 (lower is better)
Translates to: HLLPFLSIPNLQ*PQMFGCLKVLL
Trigger: AAGTAAAACCTTCAGACAGCCAAACATCTGTGGCAATTGCAGATTTGGAATGGAGAGAAATGGAAGGAGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093362.12
CDS CAA 90 bp TTTGTGGTTGACTCCTTCATGGAGTACAGCAGTTTGTATTCCTTCTaGCTGATGTTGTCAGTCAAAATAAACACAGCAGAGGAGACTTCT +
Preference number: 6 (lower is better)
Translates to: FVVDSFMEYSSLYSF*LMLSVKINTAEETS
Trigger: AGAAGTCTCCTCTGCTGTGTTTATTTTGACTGACAACATCAGCAAGAAGGAATACAAACTGCTGTACTCCATGAAGGAGTCAACCACAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8
CDS CAA 72 bp ATGGAGTACAGCAGTTTGTATTCCTTCTTGCTGATGTaGTCAGTCAAAATAAACACAGCAGAGGAGACTTCT +
Preference number: 6 (lower is better)
Translates to: MEYSSLYSFLLM*SVKINTAEETS
Trigger: AGAAGTCTCCTCTGCTGTGTTTATTTTGACTGACAACATCAGCAAGAAGGAATACAAACTGCTGTACTCCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000053427.11
ENSMUST00000093362.12
ENSMUST00000118076.8
ENSMUST00000120306.8
ENSMUST00000170116.8