Pregenerated sensors for URAH (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025481Ensembl transcript IDs: ENSMUST00000026554.11, ENSMUST00000106050.8, ENSMUST00000185612.3, ENSMUST00000209978.2, ENSMUST00000210916.2, ENSMUST00000211372.2
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AACTTCATGTCCTTTGATGAGAACAAAGCCCATGATTTGTGTGGGTaGCTAAGTCTGGGAAAGAAACAGGCAGATAGATGGCTTTCTTCA | + |
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Preference number: 1 (lower is better) Translates to: NFMSFDENKAHDLCG*LSLGKKQADRWLSS Trigger: TGAAGAAAGCCATCTATCTGCCTGTTTCTTTCCCAGACTTAGCCACCCACACAAATCATGGGCTTTGTTCTCATCAAAGGACATGAAGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000026554.11 ENSMUST00000106050.8 ENSMUST00000185612.3 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| 3UTR-3UTR CCA 90 bp | GAAACTCCAGGGCAGCTAGAATATCTTCAGCAAGCAGCAACTTCATGTCCTTTGCATGATTTGTGTGGGTaGCTAAGTCTGGGAAAGAAA | + |
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Preference number: 2 (lower is better) Translates to: ETPGQLEYLQQAATSCPLHDLCG*LSLGKK Trigger: TTTCTTTCCCAGACTTAGCCACCCACACAAATCATG...CAAAGGACATGAAGTTGCTGCTTGCTGAAGATATTCTAGCTGCCCTGGAGTTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000026554.11 ENSMUST00000185612.3 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| 3UTR-3UTR CCA 90 bp | TCCTTTGATGAGAACAAAGCCCATGATTTGTGTGGGTGGCTAAGTCTGGGAAAGAAACAGGCAGATAGATaGCTTTCTTCAGGTAACACA | + |
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Preference number: 2 (lower is better) Translates to: SFDENKAHDLCGWLSLGKKQADR*LSSGNT Trigger: TGTGTTACCTGAAGAAAGCCATCTATCTGCCTGTTT...CTTTCCCAGACTTAGCCACCCACACAAATCATGGGCTTTGTTCTCATCAAAGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000026554.11 ENSMUST00000106050.8 ENSMUST00000185612.3 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| 3UTR-3UTR CCA 90 bp | ATGTCCTTTGATGAGAACAAAGCCCATGATTTGTGTGGGTGGCTAAGTCTGGGAAAACAGGCAGATAGATaGCTTTCTTCAGGTAACACA | + |
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Preference number: 2 (lower is better) Translates to: MSFDENKAHDLCGWLSLGKQADR*LSSGNT Trigger: TGTGTTACCTGAAGAAAGCCATCTATCTGCCTGTTT...TCCCAGACTTAGCCACCCACACAAATCATGGGCTTTGTTCTCATCAAAGGACAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000026554.11 ENSMUST00000106050.8 ENSMUST00000185612.3 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| 3UTR-3UTR CCA 90 bp | CAAGCAGCAACTTCATGTCCTTTGATGAGAACAAAGCCCATGATTTGTGTGGGTAAACAGGCAGATAGATaGCTTTCTTCAGGTAACACA | + |
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Preference number: 2 (lower is better) Translates to: QAATSCPLMRTKPMICVGKQADR*LSSGNT Trigger: TGTGTTACCTGAAGAAAGCCATCTATCTGCCTGTTT...ACCCACACAAATCATGGGCTTTGTTCTCATCAAAGGACATGAAGTTGCTGCTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000026554.11 ENSMUST00000106050.8 ENSMUST00000185612.3 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| 3UTR-3UTR CCA 90 bp | CATTATGAAACTCCAGGGCAGCTAGAATATCTTCAGCAAGCAGCAACTTCATGTCATGATTTGTGTGGGTaGCTAAGTCTGGGAAAGAAA | + |
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Preference number: 2 (lower is better) Translates to: HYETPGQLEYLQQAATSCHDLCG*LSLGKK Trigger: TTTCTTTCCCAGACTTAGCCACCCACACAAATCATG...ACATGAAGTTGCTGCTTGCTGAAGATATTCTAGCTGCCCTGGAGTTTCATAATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000026554.11 ENSMUST00000185612.3 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| 3UTR-3UTR CAA 90 bp | TCCAGGGCAGCTAGAATATCTTCAGCAAGCAGCAACTTCATGTCCTTTGATGAGAACAAAGCCCATGATTaGTGTGGGTGGCTAAGTCTG | + |
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Preference number: 3 (lower is better) Translates to: SRAARISSASSNFMSFDENKAHD*CGWLSL Trigger: CAGACTTAGCCACCCACACAAATCATGGGCTTTGTT...CTCATCAAAGGACATGAAGTTGCTGCTTGCTGAAGATATTCTAGCTGCCCTGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000026554.11 ENSMUST00000185612.3 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| CDS-3UTR GCA 90 bp | TCCAGGGCAGCTAGAATATCTTCAGCAAGCAGCAACTTCATGTCCTTTGATGAGCTCAGCTCCATCCACTaGTGGCAGGGGGCCTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: SRAARISSASSNFMSFDELSSIH*WQGASR Trigger: CCTGGAGGCCCCCTGCCAGCAGTGGATGGAGCTGAG...CTCATCAAAGGACATGAAGTTGCTGCTTGCTGAAGATATTCTAGCTGCCCTGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000026554.11 ENSMUST00000185612.3 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| CDS-3UTR GCA 90 bp | ATGTCCTTTGATGAGAACAAAGCCCATGATTTGTGTGGGTGGCTAAGTCTGGGACTCAGCTCCATCCACTaGTGGCAGGGGGCCTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: MSFDENKAHDLCGWLSLGLSSIH*WQGASR Trigger: CCTGGAGGCCCCCTGCCAGCAGTGGATGGAGCTGAG...TCCCAGACTTAGCCACCCACACAAATCATGGGCTTTGTTCTCATCAAAGGACAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000026554.11 ENSMUST00000106050.8 ENSMUST00000185612.3 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| CDS-3UTR GCA 90 bp | CAAGCAGCAACTTCATGTCCTTTGATGAGAACAAAGCCCATGATTTGTGTGGGTCTCAGCTCCATCCACTaGTGGCAGGGGGCCTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: QAATSCPLMRTKPMICVGLSSIH*WQGASR Trigger: CCTGGAGGCCCCCTGCCAGCAGTGGATGGAGCTGAG...ACCCACACAAATCATGGGCTTTGTTCTCATCAAAGGACATGAAGTTGCTGCTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000026554.11 ENSMUST00000106050.8 ENSMUST00000185612.3 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| CDS-3UTR GCA 90 bp | GAATATCTTCAGCAAGCAGCAACTTCATGTCCTTTGATGAGAACAAAGCCCATGCTCAGCTCCATCCACTaGTGGCAGGGGGCCTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: EYLQQAATSCPLMRTKPMLSSIH*WQGASR Trigger: CCTGGAGGCCCCCTGCCAGCAGTGGATGGAGCTGAG...CATGGGCTTTGTTCTCATCAAAGGACATGAAGTTGCTGCTTGCTGAAGATATTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000026554.11 ENSMUST00000185612.3 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| CDS-3UTR CCA 90 bp | GATTTGTGTGGGTGGCTAAGTCTGGGAAAGAAACAGGCAGATAGATGGCTTTCTTGGCTTTATCTGGCTTaGTGTCAGGAGCCCAGGACA | + |
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Preference number: 4 (lower is better) Translates to: DLCGWLSLGKKQADRWLSWLYLA*CQEPRT Trigger: TGTCCTGGGCTCCTGACACCAAGCCAGATAAAGCCA...AGAAAGCCATCTATCTGCCTGTTTCTTTCCCAGACTTAGCCACCCACACAAATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000026554.11 ENSMUST00000106050.8 ENSMUST00000185612.3 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| CDS-3UTR CCA 90 bp | TTGTGTGGGTGGCTAAGTCTGGGAAAGAAACAGGCAGATAGATGGCTTTCTTCATGGCTTTATCTGGCTTaGTGTCAGGAGCCCAGGACA | + |
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Preference number: 4 (lower is better) Translates to: LCGWLSLGKKQADRWLSSWLYLA*CQEPRT Trigger: TGTCCTGGGCTCCTGACACCAAGCCAGATAAAGCCA...TGAAGAAAGCCATCTATCTGCCTGTTTCTTTCCCAGACTTAGCCACCCACACAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000026554.11 ENSMUST00000106050.8 ENSMUST00000185612.3 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| CDS-3UTR CCA 90 bp | GAAACTCCAGGGCAGCTAGAATATCTTCAGCAAGCAGCAACTTCATGTCCTTTGTGGCTTTATCTGGCTTaGTGTCAGGAGCCCAGGACA | + |
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Preference number: 4 (lower is better) Translates to: ETPGQLEYLQQAATSCPLWLYLA*CQEPRT Trigger: TGTCCTGGGCTCCTGACACCAAGCCAGATAAAGCCA...CAAAGGACATGAAGTTGCTGCTTGCTGAAGATATTCTAGCTGCCCTGGAGTTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000026554.11 ENSMUST00000185612.3 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| CDS-3UTR CCA 90 bp | CTAAGTCTGGGAAAGAAACAGGCAGATAGATGGCTTTCTTCAGGTAACACATCATGGCTTTATCTGGCTTaGTGTCAGGAGCCCAGGACA | + |
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Preference number: 4 (lower is better) Translates to: LSLGKKQADRWLSSGNTSWLYLA*CQEPRT Trigger: TGTCCTGGGCTCCTGACACCAAGCCAGATAAAGCCA...TGATGTGTTACCTGAAGAAAGCCATCTATCTGCCTGTTTCTTTCCCAGACTTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000026554.11 ENSMUST00000106050.8 ENSMUST00000185612.3 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| CDS-3UTR CCA 90 bp | GAATATCTTCAGCAAGCAGCAACTTCATGTCCTTTGATGAGAACAAAGCCCATGTGGCTTTATCTGGCTTaGTGTCAGGAGCCCAGGACA | + |
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Preference number: 4 (lower is better) Translates to: EYLQQAATSCPLMRTKPMWLYLA*CQEPRT Trigger: TGTCCTGGGCTCCTGACACCAAGCCAGATAAAGCCA...CATGGGCTTTGTTCTCATCAAAGGACATGAAGTTGCTGCTTGCTGAAGATATTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000026554.11 ENSMUST00000185612.3 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| CDS-3UTR CCA 90 bp | CATGATTTGTGTGGGTGGCTAAGTCTGGGAAAGAAACAGGCAGATAGATGGCTTCAGCTTATAGGTGCCTaGCTTTATCTGGCTTGGTGT | + |
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Preference number: 4 (lower is better) Translates to: HDLCGWLSLGKKQADRWLQLIGA*LYLAWC Trigger: ACACCAAGCCAGATAAAGCCAGGCACCTATAAGCTG...AAGCCATCTATCTGCCTGTTTCTTTCCCAGACTTAGCCACCCACACAAATCATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000026554.11 ENSMUST00000106050.8 ENSMUST00000185612.3 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| CDS-3UTR GCA 90 bp | CATGATTTGTGTGGGTGGCTAAGTCTGGGAAAGAAACAGGCAGATAGATGGCTTAGAACAGCTTATAGGTaGCTGGCTTTATCTGGCTTG | + |
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Preference number: 4 (lower is better) Translates to: HDLCGWLSLGKKQADRWLRTAYR*LALSGL Trigger: CAAGCCAGATAAAGCCAGGCACCTATAAGCTGTTCT...AAGCCATCTATCTGCCTGTTTCTTTCCCAGACTTAGCCACCCACACAAATCATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000026554.11 ENSMUST00000106050.8 ENSMUST00000185612.3 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| CDS-3UTR CCA 90 bp | TGGCTAAGTCTGGGAAAGAAACAGGCAGATAGATGGCTTTCTTCAGGTAACACACAGCTTATAGGTGCCTaGCTTTATCTGGCTTGGTGT | + |
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Preference number: 4 (lower is better) Translates to: WLSLGKKQADRWLSSGNTQLIGA*LYLAWC Trigger: ACACCAAGCCAGATAAAGCCAGGCACCTATAAGCTG...TGTGTTACCTGAAGAAAGCCATCTATCTGCCTGTTTCTTTCCCAGACTTAGCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000026554.11 ENSMUST00000106050.8 ENSMUST00000185612.3 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| CDS-3UTR CCA 90 bp | TTCATGTCCTTTGATGAGAACAAAGCCCATGATTTGTGTGGGTGGCTAAGTCTGCAGCTTATAGGTGCCTaGCTTTATCTGGCTTGGTGT | + |
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Preference number: 4 (lower is better) Translates to: FMSFDENKAHDLCGWLSLQLIGA*LYLAWC Trigger: ACACCAAGCCAGATAAAGCCAGGCACCTATAAGCTG...CAGACTTAGCCACCCACACAAATCATGGGCTTTGTTCTCATCAAAGGACATGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000026554.11 ENSMUST00000106050.8 ENSMUST00000185612.3 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| CDS-3UTR CCA 90 bp | CAAGCAGCAACTTCATGTCCTTTGATGAGAACAAAGCCCATGATTTGTGTGGGTCAGCTTATAGGTGCCTaGCTTTATCTGGCTTGGTGT | + |
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Preference number: 4 (lower is better) Translates to: QAATSCPLMRTKPMICVGQLIGA*LYLAWC Trigger: ACACCAAGCCAGATAAAGCCAGGCACCTATAAGCTG...ACCCACACAAATCATGGGCTTTGTTCTCATCAAAGGACATGAAGTTGCTGCTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000026554.11 ENSMUST00000106050.8 ENSMUST00000185612.3 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| CDS-3UTR CCA 90 bp | AGGGCAGCTAGAATATCTTCAGCAAGCAGCAACTTCATGTCCTTTGATGAGAACCAGCTTATAGGTGCCTaGCTTTATCTGGCTTGGTGT | + |
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Preference number: 4 (lower is better) Translates to: RAARISSASSNFMSFDENQLIGA*LYLAWC Trigger: ACACCAAGCCAGATAAAGCCAGGCACCTATAAGCTG...GTTCTCATCAAAGGACATGAAGTTGCTGCTTGCTGAAGATATTCTAGCTGCCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000026554.11 ENSMUST00000185612.3 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| CDS-3UTR CCA 90 bp | TCCTTTGATGAGAACAAAGCCCATGATTTGTGTGGGTGGCTAAGTCTGGGAAAGGGTACGTGGAACTTCTaGGTCTCCTTTGTAATAGTG | + |
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Preference number: 4 (lower is better) Translates to: SFDENKAHDLCGWLSLGKGTWNF*VSFVIV Trigger: CACTATTACAAAGGAGACCCAGAAGTTCCACGTACC...CTTTCCCAGACTTAGCCACCCACACAAATCATGGGCTTTGTTCTCATCAAAGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000026554.11 ENSMUST00000106050.8 ENSMUST00000185612.3 ENSMUST00000211372.2 |
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| CDS-3UTR CCA 90 bp | ATGTCCTTTGATGAGAACAAAGCCCATGATTTGTGTGGGTGGCTAAGTCTGGGAGGTACGTGGAACTTCTaGGTCTCCTTTGTAATAGTG | + |
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Preference number: 4 (lower is better) Translates to: MSFDENKAHDLCGWLSLGGTWNF*VSFVIV Trigger: CACTATTACAAAGGAGACCCAGAAGTTCCACGTACC...TCCCAGACTTAGCCACCCACACAAATCATGGGCTTTGTTCTCATCAAAGGACAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000026554.11 ENSMUST00000106050.8 ENSMUST00000185612.3 ENSMUST00000211372.2 |
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| 3UTR CAA 72 bp | AACTTCATGTCCTTTGATGAGAACAAAGCCCATGATTaGTGTGGGTGGCTAAGTCTGGGAAAGAAACAGGCA | + |
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Preference number: 4 (lower is better) Translates to: NFMSFDENKAHD*CGWLSLGKKQA Trigger: TGCCTGTTTCTTTCCCAGACTTAGCCACCCACACAAATCATGGGCTTTGTTCTCATCAAAGGACATGAAGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000026554.11 ENSMUST00000106050.8 ENSMUST00000185612.3 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| 3UTR CAA 72 bp | CTAGAATATCTTCAGCAAGCAGCAACTTCATGTCCTTaGATGAGAACAAAGCCCATGATTTGTGTGGGTGGC | + |
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Preference number: 4 (lower is better) Translates to: LEYLQQAATSCP*MRTKPMICVGG Trigger: GCCACCCACACAAATCATGGGCTTTGTTCTCATCAAAGGACATGAAGTTGCTGCTTGCTGAAGATATTCTAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000026554.11 ENSMUST00000185612.3 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| CDS-3UTR CCA 90 bp | AACTTCATGTCCTTTGATGAGAACAAAGCCCATGATTTGTGTGGGTGGCTAAGTGGTACGTGGAACTTCTaGGTCTCCTTTGTAATAGTG | + |
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Preference number: 4 (lower is better) Translates to: NFMSFDENKAHDLCGWLSGTWNF*VSFVIV Trigger: CACTATTACAAAGGAGACCCAGAAGTTCCACGTACC...ACTTAGCCACCCACACAAATCATGGGCTTTGTTCTCATCAAAGGACATGAAGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000026554.11 ENSMUST00000106050.8 ENSMUST00000185612.3 ENSMUST00000211372.2 |
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| CDS-3UTR CCA 90 bp | GCTAGAATATCTTCAGCAAGCAGCAACTTCATGTCCTTTGATGAGAACAAAGCCGGTACGTGGAACTTCTaGGTCTCCTTTGTAATAGTG | + |
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Preference number: 4 (lower is better) Translates to: ARISSASSNFMSFDENKAGTWNF*VSFVIV Trigger: CACTATTACAAAGGAGACCCAGAAGTTCCACGTACC...GGCTTTGTTCTCATCAAAGGACATGAAGTTGCTGCTTGCTGAAGATATTCTAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026554.11 ENSMUST00000185612.3 ENSMUST00000211372.2 |
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| CDS GCA 90 bp | AAGCAGAGAAGGTTCTTGAAGACACTGAAGATGGTGAGTCCTTCCTaGAATAGCCCCTGGGTCTTCCAGACAGCAGGAGGTCAGGTGCCA | + |
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Preference number: 5 (lower is better) Translates to: KQRRFLKTLKMVSPS*NSPWVFQTAGGQVP Trigger: TGGCACCTGACCTCCTGCTGTCTGGAAGACCCAGGGGCTATTGCAGGAAGGACTCACCATCTTCAGTGTCTTCAAGAACCTTCTCTGCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209978.2 |
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| CDS-3UTR CAA 90 bp | ATGTCCTTTGATGAGAACAAAGCCCATGATTTGTGTGGGTGGCTAAGTCTGGGACTGGCTTTATCTGGCTaGGTGTCAGGAGCCCAGGAC | + |
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Preference number: 5 (lower is better) Translates to: MSFDENKAHDLCGWLSLGLALSG*VSGAQD Trigger: GTCCTGGGCTCCTGACACCAAGCCAGATAAAGCCAG...TCCCAGACTTAGCCACCCACACAAATCATGGGCTTTGTTCTCATCAAAGGACAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000026554.11 ENSMUST00000106050.8 ENSMUST00000185612.3 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| CDS-3UTR CAA 90 bp | AGCAACTTCATGTCCTTTGATGAGAACAAAGCCCATGATTTGTGTGGGTGGCTAAGCGACCGTCCAGGTTaGTGTAGCTTGTCCTCAGCT | + |
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Preference number: 5 (lower is better) Translates to: SNFMSFDENKAHDLCGWLSDRPG*CSLSSA Trigger: AGCTGAGGACAAGCTACACAAACCTGGACGGTCGCT...TAGCCACCCACACAAATCATGGGCTTTGTTCTCATCAAAGGACATGAAGTTGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000026554.11 ENSMUST00000106050.8 ENSMUST00000185612.3 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| CDS-3UTR CAA 90 bp | AACTTCATGTCCTTTGATGAGAACAAAGCCCATGATTTGTGTGGGTGGCTAAGTAGCGACCGTCCAGGTTaGTGTAGCTTGTCCTCAGCT | + |
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Preference number: 5 (lower is better) Translates to: NFMSFDENKAHDLCGWLSSDRPG*CSLSSA Trigger: AGCTGAGGACAAGCTACACAAACCTGGACGGTCGCT...ACTTAGCCACCCACACAAATCATGGGCTTTGTTCTCATCAAAGGACATGAAGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000026554.11 ENSMUST00000106050.8 ENSMUST00000185612.3 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| CDS-3UTR CAA 90 bp | TTTGATGAGAACAAAGCCCATGATTTGTGTGGGTGGCTAAGTCTGGGAAAGAAAAGCGACCGTCCAGGTTaGTGTAGCTTGTCCTCAGCT | + |
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Preference number: 5 (lower is better) Translates to: FDENKAHDLCGWLSLGKKSDRPG*CSLSSA Trigger: AGCTGAGGACAAGCTACACAAACCTGGACGGTCGCT...TTTCTTTCCCAGACTTAGCCACCCACACAAATCATGGGCTTTGTTCTCATCAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000026554.11 ENSMUST00000106050.8 ENSMUST00000185612.3 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| CDS-3UTR CAA 90 bp | CTTCAGCAAGCAGCAACTTCATGTCCTTTGATGAGAACAAAGCCCATGATTTGTAGCGACCGTCCAGGTTaGTGTAGCTTGTCCTCAGCT | + |
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Preference number: 5 (lower is better) Translates to: LQQAATSCPLMRTKPMICSDRPG*CSLSSA Trigger: AGCTGAGGACAAGCTACACAAACCTGGACGGTCGCT...ACAAATCATGGGCTTTGTTCTCATCAAAGGACATGAAGTTGCTGCTTGCTGAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000026554.11 ENSMUST00000185612.3 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| CDS TCA 90 bp | TACGTGGAACTTCTGGGTCTCCTTTGTAATAGTGAAAACCACCTGTaGGAAGCAGAGAAGGTTCTTGAAGACACTGAAGATGGTGAGTCC | + |
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Preference number: 5 (lower is better) Translates to: YVELLGLLCNSENHL*EAEKVLEDTEDGES Trigger: GGACTCACCATCTTCAGTGTCTTCAAGAACCTTCTCTGCTTCTCACAGGTGGTTTTCACTATTACAAAGGAGACCCAGAAGTTCCACGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209978.2 |
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| CDS CAA 90 bp | TTGGTGTCAGGAGCCCAGGACAGCGACCGTCCAGGTTTGTGTAGCTaGTCCTCAGCTCCATCCACTGCTGGCAGGGGGCCTCCAGGCGGG | + |
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Preference number: 6 (lower is better) Translates to: LVSGAQDSDRPGLCS*SSAPSTAGRGPPGG Trigger: CCCGCCTGGAGGCCCCCTGCCAGCAGTGGATGGAGCTGAGGACAAGCTACACAAACCTGGACGGTCGCTGTCCTGGGCTCCTGACACCAA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENSMUST00000026554.11 ENSMUST00000106050.8 ENSMUST00000185612.3 ENSMUST00000209978.2 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| CDS CAA 72 bp | GGAGCCCAGGACAGCGACCGTCCAGGTTTGTGTAGCTaGTCCTCAGCTCCATCCACTGCTGGCAGGGGGCCT | + |
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Preference number: 6 (lower is better) Translates to: GAQDSDRPGLCS*SSAPSTAGRGP Trigger: AGGCCCCCTGCCAGCAGTGGATGGAGCTGAGGACAAGCTACACAAACCTGGACGGTCGCTGTCCTGGGCTCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENSMUST00000026554.11 ENSMUST00000106050.8 ENSMUST00000185612.3 ENSMUST00000209978.2 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| CDS CAA 90 bp | TTATCTGGCTTGGTGTCAGGAGCCCAGGACAGCGACCGTCCAGGTTaGTGTAGCTTGTCCTCAGCTCCATCCACTGCTGGCAGGGGGCCT | + |
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Preference number: 6 (lower is better) Translates to: LSGLVSGAQDSDRPG*CSLSSAPSTAGRGP Trigger: AGGCCCCCTGCCAGCAGTGGATGGAGCTGAGGACAAGCTACACAAACCTGGACGGTCGCTGTCCTGGGCTCCTGACACCAAGCCAGATAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENSMUST00000026554.11 ENSMUST00000106050.8 ENSMUST00000185612.3 ENSMUST00000209978.2 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| CDS CAA 72 bp | TTGGTGTCAGGAGCCCAGGACAGCGACCGTCCAGGTTaGTGTAGCTTGTCCTCAGCTCCATCCACTGCTGGC | + |
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Preference number: 6 (lower is better) Translates to: LVSGAQDSDRPG*CSLSSAPSTAG Trigger: GCCAGCAGTGGATGGAGCTGAGGACAAGCTACACAAACCTGGACGGTCGCTGTCCTGGGCTCCTGACACCAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000026554.11 ENSMUST00000106050.8 ENSMUST00000185612.3 ENSMUST00000209978.2 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| CDS GCA 72 bp | CCCTGGGTCTTCCAGACAGCAGGAGGTCAGGTGCCATaGCGGCTCTACATAGGGGTAAAAGCTCTCTTGACC | + |
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Preference number: 6 (lower is better) Translates to: PWVFQTAGGQVP*RLYIGVKALLT Trigger: GGTCAAGAGAGCTTTTACCCCTATGTAGAGCCGGCATGGCACCTGACCTCCTGCTGTCTGGAAGACCCAGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209978.2 |
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| CDS CCA 72 bp | ACACTGAAGATGGTGAGTCCTTCCTGCAATAGCCCCTaGGTCTTCCAGACAGCAGGAGGTCAGGTGCCATGC | + |
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Preference number: 6 (lower is better) Translates to: TLKMVSPSCNSP*VFQTAGGQVPC Trigger: GCATGGCACCTGACCTCCTGCTGTCTGGAAGACCCAGGGGCTATTGCAGGAAGGACTCACCATCTTCAGTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209978.2 |
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| CDS GCA 72 bp | TCCAGTAGCGCTCTGTGTCGAAGAACAGCTTATAGGTaGCTGGCTTTATCTGGCTTGGTGTCAGGAGCCCAG | + |
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Preference number: 6 (lower is better) Translates to: SSSALCRRTAYR*LALSGLVSGAQ Trigger: CTGGGCTCCTGACACCAAGCCAGATAAAGCCAGGCACCTATAAGCTGTTCTTCGACACAGAGCGCTACTGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000026554.11 ENSMUST00000106050.8 ENSMUST00000185612.3 ENSMUST00000209978.2 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| CDS CCA 72 bp | GTAGCGCTCTGTGTCGAAGAACAGCTTATAGGTGCCTaGCTTTATCTGGCTTGGTGTCAGGAGCCCAGGACA | + |
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Preference number: 6 (lower is better) Translates to: VALCVEEQLIGA*LYLAWCQEPRT Trigger: TGTCCTGGGCTCCTGACACCAAGCCAGATAAAGCCAGGCACCTATAAGCTGTTCTTCGACACAGAGCGCTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000026554.11 ENSMUST00000106050.8 ENSMUST00000185612.3 ENSMUST00000209978.2 ENSMUST00000210916.2 ENSMUST00000211372.2 |
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| CDS CAA 90 bp | TCCTTTGTAATAGTGAAAACCACCTGTGAGAAGCAGAGAAGGTTCTaGAAGACACTGAAGATGGTGAGTCCTTCCTGCAATAGCCCCTGG | + |
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Preference number: 6 (lower is better) Translates to: SFVIVKTTCEKQRRF*KTLKMVSPSCNSPW Trigger: CCAGGGGCTATTGCAGGAAGGACTCACCATCTTCAGTGTCTTCAAGAACCTTCTCTGCTTCTCACAGGTGGTTTTCACTATTACAAAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209978.2 |
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