Pregenerated sensors for URAD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000075543Ensembl transcript IDs: ENSMUST00000100433.5
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CAATTCTCCACTTCCTTTGTGTGGGTGTATGAATTGTCTTTCCAGGCCCAAGCCAGGGTGTCCCCTCTCTaGGGCATCCTGCTGGAGTTC | + |
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Preference number: 2 (lower is better) Translates to: QFSTSFVWVYELSFQAQARVSPL*GILLEF Trigger: GAACTCCAGCAGGATGCCTCAGAGAGGGGACACCCT...GGCTTGGGCCTGGAAAGACAATTCATACACCCACACAAAGGAAGTGGAGAATTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100433.5 |
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| CDS-3UTR TCA 90 bp | CAATTCTCCACTTCCTTTGTGTGGGTGTATGAATTGTCTTTCCAGGCCCAAGCCGCTCTGCTCACGCTGTaGCTCAGCAGTGAGTGTGCC | + |
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Preference number: 4 (lower is better) Translates to: QFSTSFVWVYELSFQAQAALLTL*LSSECA Trigger: GGCACACTCACTGCTGAGTCACAGCGTGAGCAGAGC...GGCTTGGGCCTGGAAAGACAATTCATACACCCACACAAAGGAAGTGGAGAATTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100433.5 |
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| 3UTR CAA 72 bp | CTTCAATTCTCCACTTCCTTTGTGTGGGTGTATGAATaGTCTTTCCAGGCCCAAGCCATTCCGGGGCGCAGG | + |
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Preference number: 4 (lower is better) Translates to: LQFSTSFVWVYE*SFQAQAIPGRR Trigger: CCTGCGCCCCGGAATGGCTTGGGCCTGGAAAGACAATTCATACACCCACACAAAGGAAGTGGAGAATTGAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100433.5 |
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| CDS-3UTR TCA 90 bp | TTCAATTCTCCACTTCCTTTGTGTGGGTGTATGAATTGTCTTTCCAGGCCCAAGCCAGCTAGGTCCGGGTaGCAACGCAGGATGCCTTCC | + |
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Preference number: 4 (lower is better) Translates to: FNSPLPLCGCMNCLSRPKPARSG*QRRMPS Trigger: GGAAGGCATCCTGCGTTGTCACCCGGACCTAGCTGG...CTTGGGCCTGGAAAGACAATTCATACACCCACACAAAGGAAGTGGAGAATTGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100433.5 |
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| CDS-3UTR TCA 90 bp | CAATTCTCCACTTCCTTTGTGTGGGTGTATGAATTGTCTTTCCAGGCCCAAGCCGCTGTGACTCAGCAGTaGGTGTGCCCTGTTGCAGAT | + |
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Preference number: 4 (lower is better) Translates to: QFSTSFVWVYELSFQAQAAVTQQ*VCPVAD Trigger: ATCTGCAACAGGGCACACTCACTGCTGAGTCACAGC...GGCTTGGGCCTGGAAAGACAATTCATACACCCACACAAAGGAAGTGGAGAATTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100433.5 |
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| CDS-3UTR CCA 90 bp | CAATTCTCCACTTCCTTTGTGTGGGTGTATGAATTGTCTTTCCAGGCCCAAGCCCTAGTGAGACCTGCTTaGCTCTGCTCACGCTGTGAC | + |
|
Preference number: 4 (lower is better) Translates to: QFSTSFVWVYELSFQAQALVRPA*LCSRCD Trigger: GTCACAGCGTGAGCAGAGCCAAGCAGGTCTCACTAG...GGCTTGGGCCTGGAAAGACAATTCATACACCCACACAAAGGAAGTGGAGAATTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100433.5 |
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| CDS-3UTR CCA 90 bp | CTTCAATTCTCCACTTCCTTTGTGTGGGTGTATGAATTGTCTTTCCAGGCCCAACTGGCGGAGTGGGAGTaGGCACCGAGCAAATCTGTC | + |
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Preference number: 4 (lower is better) Translates to: LQFSTSFVWVYELSFQAQLAEWE*APSKSV Trigger: GACAGATTTGCTCGGTGCCCACTCCCACTCCGCCAG...TTGGGCCTGGAAAGACAATTCATACACCCACACAAAGGAAGTGGAGAATTGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100433.5 |
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| CDS-3UTR CCA 90 bp | AATTCTCCACTTCCTTTGTGTGGGTGTATGAATTGTCTTTCCAGGCCCAAGCCATTCCAAGCCAGAGAATaGACGCTGGGACCAGACAGC | + |
|
Preference number: 4 (lower is better) Translates to: NSPLPLCGCMNCLSRPKPFQARE*TLGPDS Trigger: GCTGTCTGGTCCCAGCGTCCATTCTCTGGCTTGGAA...TGGCTTGGGCCTGGAAAGACAATTCATACACCCACACAAAGGAAGTGGAGAATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100433.5 |
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| CDS-3UTR TCA 90 bp | CTTCAATTCTCCACTTCCTTTGTGTGGGTGTATGAATTGTCTTTCCAGGCCCAATCAGGCGCAGGTGGCTaGTCTTCTTCACTTCACCCA | + |
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Preference number: 4 (lower is better) Translates to: LQFSTSFVWVYELSFQAQSGAGG*SSSLHP Trigger: TGGGTGAAGTGAAGAAGATCAGCCACCTGCGCCTGA...TTGGGCCTGGAAAGACAATTCATACACCCACACAAAGGAAGTGGAGAATTGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100433.5 |
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| CDS-3UTR CCA 90 bp | AATTCTCCACTTCCTTTGTGTGGGTGTATGAATTGTCTTTCCAGGCCCAAGCCATCTGTCAGGCGCAGGTaGCTGATCTTCTTCACTTCA | + |
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Preference number: 4 (lower is better) Translates to: NSPLPLCGCMNCLSRPKPSVRRR*LIFFTS Trigger: TGAAGTGAAGAAGATCAGCCACCTGCGCCTGACAGA...TGGCTTGGGCCTGGAAAGACAATTCATACACCCACACAAAGGAAGTGGAGAATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100433.5 |
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| CDS TCA 90 bp | TTCACTTCACCCAGGGCGGTGCGCAGCTCGGATTCCGGCTGGCACTaGAGCCTGCGGGCTAGCTCTCGGGGCACAGTGGCACGGTCGCTC | + |
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Preference number: 5 (lower is better) Translates to: FTSPRAVRSSDSGWH*SLRASSRGTVARSL Trigger: GAGCGACCGTGCCACTGTGCCCCGAGAGCTAGCCCGCAGGCTTCAGTGCCAGCCGGAATCCGAGCTGCGCACCGCCCTGGGTGAAGTGAA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100433.5 |
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| CDS TCA 90 bp | CGGAGTGGGAGTGGGCACCGAGCAAATCTGTCAGGCGCAGGTGGCTaGTCTTCTTCACTTCACCCAGGGCGGTGCGCAGCTCGGATTCCG | + |
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Preference number: 5 (lower is better) Translates to: RSGSGHRANLSGAGG*SSSLHPGRCAARIP Trigger: CGGAATCCGAGCTGCGCACCGCCCTGGGTGAAGTGAAGAAGATCAGCCACCTGCGCCTGACAGATTTGCTCGGTGCCCACTCCCACTCCG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100433.5 |
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| CDS TCA 90 bp | AGGCGCGCTGCCAGAACGAACGGAAAGCCGAAGCGCTCACGGTACTaGGCATTGAGTTGCTGCAGCCGCAGCCTGTCGTCGGTGTCTAGG | + |
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Preference number: 5 (lower is better) Translates to: RRAARTNGKPKRSRY*ALSCCSRSLSSVSR Trigger: CCTAGACACCGACGACAGGCTGCGGCTGCAGCAACTCAATGCTCAGTACCGTGAGCGCTTCGGCTTTCCGTTCGTTCTGGCAGCGCGCCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100433.5 |
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| CDS TCA 90 bp | GCAGTGAGTGTGCCCTGTTGCAGATCACGGCCAGCTAGGTCCGGGTaGCAACGCAGGATGCCTTCCTGGCCTGATCTCGGGAGAGCATCA | + |
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Preference number: 5 (lower is better) Translates to: AVSVPCCRSRPARSG*QRRMPSWPDLGRAS Trigger: TGATGCTCTCCCGAGATCAGGCCAGGAAGGCATCCTGCGTTGTCACCCGGACCTAGCTGGCCGTGATCTGCAACAGGGCACACTCACTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100433.5 |
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| CDS CCA 90 bp | TGCAGCCGCAGCCTGTCGTCGGTGTCTAGGCTAGTGAGACCTGCTTaGCTCTGCTCACGCTGTGACTCAGCAGTGAGTGTGCCCTGTTGC | + |
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Preference number: 5 (lower is better) Translates to: CSRSLSSVSRLVRPA*LCSRCDSAVSVPCC Trigger: GCAACAGGGCACACTCACTGCTGAGTCACAGCGTGAGCAGAGCCAAGCAGGTCTCACTAGCCTAGACACCGACGACAGGCTGCGGCTGCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100433.5 |
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| CDS-3UTR CAA 90 bp | CTTCAATTCTCCACTTCCTTTGTGTGGGTGTATGAATTGTCTTTCCAGGCCCAAGTACTGAGCATTGAGTaGCTGCAGCCGCAGCCTGTC | + |
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Preference number: 5 (lower is better) Translates to: LQFSTSFVWVYELSFQAQVLSIE*LQPQPV Trigger: GACAGGCTGCGGCTGCAGCAACTCAATGCTCAGTAC...TTGGGCCTGGAAAGACAATTCATACACCCACACAAAGGAAGTGGAGAATTGAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100433.5 |
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| CDS TCA 72 bp | GTGCCCTGTTGCAGATCACGGCCAGCTAGGTCCGGGTaGCAACGCAGGATGCCTTCCTGGCCTGATCTCGGG | + |
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Preference number: 6 (lower is better) Translates to: VPCCRSRPARSG*QRRMPSWPDLG Trigger: CCCGAGATCAGGCCAGGAAGGCATCCTGCGTTGTCACCCGGACCTAGCTGGCCGTGATCTGCAACAGGGCAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100433.5 |
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| CDS TCA 72 bp | GCCAGAACGAACGGAAAGCCGAAGCGCTCACGGTACTaGGCATTGAGTTGCTGCAGCCGCAGCCTGTCGTCG | + |
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Preference number: 6 (lower is better) Translates to: ARTNGKPKRSRY*ALSCCSRSLSS Trigger: CGACGACAGGCTGCGGCTGCAGCAACTCAATGCTCAGTACCGTGAGCGCTTCGGCTTTCCGTTCGTTCTGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100433.5 |
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| CDS TCA 72 bp | AGTGGGCACCGAGCAAATCTGTCAGGCGCAGGTGGCTaGTCTTCTTCACTTCACCCAGGGCGGTGCGCAGCT | + |
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Preference number: 6 (lower is better) Translates to: SGHRANLSGAGG*SSSLHPGRCAA Trigger: AGCTGCGCACCGCCCTGGGTGAAGTGAAGAAGATCAGCCACCTGCGCCTGACAGATTTGCTCGGTGCCCACT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100433.5 |
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| CDS TCA 72 bp | GACCTGCTTGGCTCTGCTCACGCTGTGACTCAGCAGTaGGTGTGCCCTGTTGCAGATCACGGCCAGCTAGGT | + |
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Preference number: 6 (lower is better) Translates to: DLLGSAHAVTQQ*VCPVADHGQLG Trigger: ACCTAGCTGGCCGTGATCTGCAACAGGGCACACTCACTGCTGAGTCACAGCGTGAGCAGAGCCAAGCAGGTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100433.5 |
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| CDS TCA 72 bp | CGAACGGAAAGCCGAAGCGCTCACGGTACTGAGCATTaGGTTGCTGCAGCCGCAGCCTGTCGTCGGTGTCTA | + |
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Preference number: 6 (lower is better) Translates to: RTESRSAHGTEH*VAAAAACRRCL Trigger: TAGACACCGACGACAGGCTGCGGCTGCAGCAACTCAATGCTCAGTACCGTGAGCGCTTCGGCTTTCCGTTCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100433.5 |
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| CDS CCA 72 bp | AGCCTGTCGTCGGTGTCTAGGCTAGTGAGACCTGCTTaGCTCTGCTCACGCTGTGACTCAGCAGTGAGTGTG | + |
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Preference number: 6 (lower is better) Translates to: SLSSVSRLVRPA*LCSRCDSAVSV Trigger: CACACTCACTGCTGAGTCACAGCGTGAGCAGAGCCAAGCAGGTCTCACTAGCCTAGACACCGACGACAGGCT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100433.5 |
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