Pregenerated sensors for UQCRQ (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044894Ensembl transcript IDs: ENSMUST00000061326.5, ENSMUST00000109019.8, ENSMUST00000109021.4
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GATGGGAGCAGAGGGTTGGGACCCTGCACTCCAGGTTCCACGCTATaGATAGCTACCACAGCCCCTGCAGGGCTTGTGCTGAGAAAGGGA | + |
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Preference number: 1 (lower is better) Translates to: DGSRGLGPCTPGSTL*IATTAPAGLVLRKG Trigger: TCCCTTTCTCAGCACAAGCCCTGCAGGGGCTGTGGTAGCTATGCATAGCGTGGAACCTGGAGTGCAGGGTCCCAACCCTCTGCTCCCATC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061326.5 |
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| 3UTR GCA 90 bp | ACCCTGCACTCCAGGTTCCACGCTATGCATAGCTACCACAGCCCCTaGAGGGCTTGTGCTGAGAAAGGGATTGTCATGAACTTGCATATT | + |
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Preference number: 1 (lower is better) Translates to: TLHSRFHAMHSYHSP*RACAEKGIVMNLHI Trigger: AATATGCAAGTTCATGACAATCCCTTTCTCAGCACAAGCCCTGCAGGGGCTGTGGTAGCTATGCATAGCGTGGAACCTGGAGTGCAGGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061326.5 |
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| 3UTR CCA 90 bp | GATCTTTTCAGCCTCTGTGGTCCACATATGACTAAAAGCCACTGTTaGATTGGCAACATGACAGATAACCAACCATGGTTGCCTGACCTT | + |
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Preference number: 1 (lower is better) Translates to: DLFSLCGPHMTKSHC*IGNMTDNQPWLPDL Trigger: AAGGTCAGGCAACCATGGTTGGTTATCTGTCATGTTGCCAATCCAACAGTGGCTTTTAGTCATATGTGGACCACAGAGGCTGAAAAGATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061326.5 |
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| 3UTR CAA 90 bp | GTTCATCTGTGTCTAGCAAGTCCACCTGACACCCTGATTACAGTGTaGTCCCTAGACCTTAAGGATGTGATGGGAGCAGAGGGTTGGGAC | + |
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Preference number: 2 (lower is better) Translates to: VHLCLASPPDTLITV*SLDLKDVMGAEGWD Trigger: GTCCCAACCCTCTGCTCCCATCACATCCTTAAGGTCTAGGGACAACACTGTAATCAGGGTGTCAGGTGGACTTGCTAGACACAGATGAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061326.5 |
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| 3UTR CAA 90 bp | GATTTCTCAGGAGACGCAGGCCAGTCAGGGACACACAGTGAGACCTaGTCTCAAACTAAGCACACAAAGTCACAAAGGGAAGTCCATAAG | + |
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Preference number: 2 (lower is better) Translates to: DFSGDAGQSGTHSET*SQTKHTKSQREVHK Trigger: CTTATGGACTTCCCTTTGTGACTTTGTGTGCTTAGTTTGAGACAAGGTCTCACTGTGTGTCCCTGACTGGCCTGCGTCTCCTGAGAAATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061326.5 |
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| 3UTR CAA 90 bp | AAAAGCCACTGTTGGATTGGCAACATGACAGATAACCAACCATGGTaGCCTGACCTTGGCTGTAGCAGTCAAGGGAATGTCTCATGCTTT | + |
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Preference number: 2 (lower is better) Translates to: KSHCWIGNMTDNQPW*PDLGCSSQGNVSCF Trigger: AAAGCATGAGACATTCCCTTGACTGCTACAGCCAAGGTCAGGCAACCATGGTTGGTTATCTGTCATGTTGCCAATCCAACAGTGGCTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061326.5 |
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| 3UTR-3UTR TCA 90 bp | CCCACCCTATCATCTCTAGGTGAGGAGAAACTAAAGACACCCAAAGGTGTATATCTGCAGGGCTTGTGCTaGGAAAGGGATTGTCATGAA | + |
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Preference number: 2 (lower is better) Translates to: PTLSSLGEEKLKTPKGVYLQGLC*ERDCHE Trigger: TTCATGACAATCCCTTTCTCAGCACAAGCCCTGCAG...ATATACACCTTTGGGTGTCTTTAGTTTCTCCTCACCTAGAGATGATAGGGTGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061326.5 |
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| 3UTR CAA 90 bp | AAACTAAGCACACAAAGTCACAAAGGGAAGTCCATAAGTAGTTTATaGTCTTCAAGACTACAGTGTGGATTCCTCTCCCAGAGAAGGGTC | + |
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Preference number: 2 (lower is better) Translates to: KLSTQSHKGKSISSL*SSRLQCGFLSQRRV Trigger: GACCCTTCTCTGGGAGAGGAATCCACACTGTAGTCTTGAAGACAATAAACTACTTATGGACTTCCCTTTGTGACTTTGTGTGCTTAGTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061326.5 |
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| 3UTR-3UTR TCA 90 bp | AAGCAACTATTGTTGGAAGTCATTTGCTCTCTTCTGAGAACTTTTAGTACTAGCACCAACTCAGTCATATaGTTCTGGGCAAAGTACTTA | + |
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Preference number: 2 (lower is better) Translates to: KQLLLEVICSLLRTFSTSTNSVI*FWAKYL Trigger: TAAGTACTTTGCCCAGAATCATATGACTGAGTTGGT...GCTAGTACTAAAAGTTCTCAGAAGAGAGCAAATGACTTCCAACAATAGTTGCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061326.5 |
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| 3UTR GCA 72 bp | AGAGGGTTGGGACCCTGCACTCCAGGTTCCACGCTATaGATAGCTACCACAGCCCCTGCAGGGCTTGTGCTG | + |
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Preference number: 3 (lower is better) Translates to: RGLGPCTPGSTL*IATTAPAGLVL Trigger: CAGCACAAGCCCTGCAGGGGCTGTGGTAGCTATGCATAGCGTGGAACCTGGAGTGCAGGGTCCCAACCCTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061326.5 |
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| 3UTR GCA 72 bp | TCCAGGTTCCACGCTATGCATAGCTACCACAGCCCCTaGAGGGCTTGTGCTGAGAAAGGGATTGTCATGAAC | + |
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Preference number: 3 (lower is better) Translates to: SRFHAMHSYHSP*RACAEKGIVMN Trigger: GTTCATGACAATCCCTTTCTCAGCACAAGCCCTGCAGGGGCTGTGGTAGCTATGCATAGCGTGGAACCTGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061326.5 |
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| 3UTR TCA 72 bp | GCCCCTGCAGGGCTTGTGCTGAGAAAGGGATTGTCATaGACTTGCATATTGCCAAAACAACGTTGTGCTGGG | + |
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Preference number: 3 (lower is better) Translates to: APAGLVLRKGLS*TCILPKQRCAG Trigger: CCCAGCACAACGTTGTTTTGGCAATATGCAAGTTCATGACAATCCCTTTCTCAGCACAAGCCCTGCAGGGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061326.5 |
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| 3UTR TCA 72 bp | CGACTGGACTGTAAATTGCTACAGTCCTTAACCAAATaGCAGGGCCAGCTCAGGATTGCCAACCACACCCAC | + |
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Preference number: 3 (lower is better) Translates to: RLDCKLLQSLTK*QGQLRIANHTH Trigger: GTGGGTGTGGTTGGCAATCCTGAGCTGGCCCTGTCATTTGGTTAAGGACTGTAGCAATTTACAGTCCAGTCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061326.5 |
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| 3UTR CCA 72 bp | GCTAAGGAAGGCCTTCCCTACCTAAGGAAGGCAGCATaGCTTGCTTTTAAGATCACACACTGGTACCTGGCT | + |
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Preference number: 3 (lower is better) Translates to: AKEGLPYLRKAA*LAFKITHWYLA Trigger: AGCCAGGTACCAGTGTGTGATCTTAAAAGCAAGCCATGCTGCCTTCCTTAGGTAGGGAAGGCCTTCCTTAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061326.5 |
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| 3UTR CCA 72 bp | CAGCATGGCTTGCTTTTAAGATCACACACTGGTACCTaGCTCTACCAACTCAGTCATATGATTCTGGGCAAA | + |
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Preference number: 3 (lower is better) Translates to: QHGLLLRSHTGT*LYQLSHMILGK Trigger: TTTGCCCAGAATCATATGACTGAGTTGGTAGAGCCAGGTACCAGTGTGTGATCTTAAAAGCAAGCCATGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061326.5 |
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| 3UTR CCA 72 bp | AGGAAGGCAGCATGGCTTGCTTTTAAGATCACACACTaGTACCTGGCTCTACCAACTCAGTCATATGATTCT | + |
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Preference number: 3 (lower is better) Translates to: RKAAWLAFKITH*YLALPTQSYDS Trigger: AGAATCATATGACTGAGTTGGTAGAGCCAGGTACCAGTGTGTGATCTTAAAAGCAAGCCATGCTGCCTTCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061326.5 |
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| 3UTR CCA 72 bp | AGCCTCTGTGGTCCACATATGACTAAAAGCCACTGTTaGATTGGCAACATGACAGATAACCAACCATGGTTG | + |
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Preference number: 3 (lower is better) Translates to: SLCGPHMTKSHC*IGNMTDNQPWL Trigger: CAACCATGGTTGGTTATCTGTCATGTTGCCAATCCAACAGTGGCTTTTAGTCATATGTGGACCACAGAGGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061326.5 |
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| 3UTR-3UTR CAA 90 bp | GAGCAGGTGGTATATCTTTTCCACAAAGTGATAGATCTTTTCAGCCTCTGTGGTGGAAGGCAGCATGGCTaGCTTTTAAGATCACACACT | + |
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Preference number: 3 (lower is better) Translates to: EQVVYLFHKVIDLFSLCGGRQHG*LLRSHT Trigger: AGTGTGTGATCTTAAAAGCAAGCCATGCTGCCTTCC...ACCACAGAGGCTGAAAAGATCTATCACTTTGTGGAAAAGATATACCACCTGCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000061326.5 |
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| 3UTR-3UTR CAA 90 bp | TGTATATCTAGAGCAGGTGGTATATCTTTTCCACAAAGTGATAGATCTTTTCAGCATGGTTGCCTGACCTaGGCTGTAGCAGTCAAGGGA | + |
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Preference number: 3 (lower is better) Translates to: CISRAGGISFPQSDRSFQHGCLT*AVAVKG Trigger: TCCCTTGACTGCTACAGCCAAGGTCAGGCAACCATG...CTGAAAAGATCTATCACTTTGTGGAAAAGATATACCACCTGCTCTAGATATACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061326.5 |
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| 3UTR-3UTR CAA 90 bp | CTCATCAGCAAAGGGATTAGAATGCTTACTTCAAAGGCTGCCGAGTTAAAAGTTACACACAGTGAGACCTaGTCTCAAACTAAGCACACA | + |
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Preference number: 3 (lower is better) Translates to: LISKGIRMLTSKAAELKVTHSET*SQTKHT Trigger: TGTGTGCTTAGTTTGAGACAAGGTCTCACTGTGTGT...AACTTTTAACTCGGCAGCCTTTGAAGTAAGCATTCTAATCCCTTTGCTGATGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061326.5 |
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| 3UTR TCA 72 bp | CTAAGCAACTATTGTTGGAAGTCATTTGCTCTCTTCTaGGAACTTTTAGTACTAGCTAGCGATCATCAGGCA | + |
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Preference number: 3 (lower is better) Translates to: LSNYCWKSFALF*ELLVLASDHQA Trigger: TGCCTGATGATCGCTAGCTAGTACTAAAAGTTCTCAGAAGAGAGCAAATGACTTCCAACAATAGTTGCTTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061326.5 |
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| 3UTR TCA 72 bp | CTCAGTCATATGATTCTGGGCAAAGTACTTAAACTCTaGTTCCTCATCAGCAAAGGGATTAGAATGCTTACT | + |
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Preference number: 3 (lower is better) Translates to: LSHMILGKVLKL*FLISKGIRMLT Trigger: AGTAAGCATTCTAATCCCTTTGCTGATGAGGAATCAGAGTTTAAGTACTTTGCCCAGAATCATATGACTGAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061326.5 |
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| CDS-3UTR GCA 90 bp | GTTTATTGTCTTCAAGACTACAGTGTGGATTCCTCTCCCAGAGAAGGGTCTTTCGGATGCGCTCGCGAGTaGGGCGCAGCACGTTGGGGA | + |
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Preference number: 4 (lower is better) Translates to: VYCLQDYSVDSSPREGSFGCARE*GAARWG Trigger: TCCCCAACGTGCTGCGCCGCACTCGCGAGCGCATCC...GAAAGACCCTTCTCTGGGAGAGGAATCCACACTGTAGTCTTGAAGACAATAAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061326.5 ENSMUST00000109021.4 |
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| CDS-3UTR GCA 90 bp | AAGTCCATAAGTAGTTTATTGTCTTCAAGACTACAGTGTGGATTCCTCTCCCAGGGATGCGCTCGCGAGTaGGGCGCAGCACGTTGGGGA | + |
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Preference number: 4 (lower is better) Translates to: KSISSLLSSRLQCGFLSQGCARE*GAARWG Trigger: TCCCCAACGTGCTGCGCCGCACTCGCGAGCGCATCC...CTGGGAGAGGAATCCACACTGTAGTCTTGAAGACAATAAACTACTTATGGACTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061326.5 ENSMUST00000109021.4 |
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| 3UTR CAA 72 bp | TGTCTAGCAAGTCCACCTGACACCCTGATTACAGTGTaGTCCCTAGACCTTAAGGATGTGATGGGAGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: CLASPPDTLITV*SLDLKDVMGAE Trigger: CTCTGCTCCCATCACATCCTTAAGGTCTAGGGACAACACTGTAATCAGGGTGTCAGGTGGACTTGCTAGACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061326.5 |
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| CDS-3UTR TCA 90 bp | TTATTGTCTTCAAGACTACAGTGTGGATTCCTCTCCCAGAGAAGGGTCTTTCAGTGGGGATGCCTTTGCTaGAATAGCTTGGGAAGGCGC | + |
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Preference number: 4 (lower is better) Translates to: LLSSRLQCGFLSQRRVFQWGCLC*NSLGRR Trigger: GCGCCTTCCCAAGCTATTTCAGCAAAGGCATCCCCA...CTGAAAGACCCTTCTCTGGGAGAGGAATCCACACTGTAGTCTTGAAGACAATAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061326.5 ENSMUST00000109021.4 |
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| 3UTR CAA 72 bp | TGCAGGGCTTGTGCTGAGAAAGGGATTGTCATGAACTaGCATATTGCCAAAACAACGTTGTGCTGGGCATGG | + |
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Preference number: 4 (lower is better) Translates to: CRACAEKGIVMN*HIAKTTLCWAW Trigger: CCATGCCCAGCACAACGTTGTTTTGGCAATATGCAAGTTCATGACAATCCCTTTCTCAGCACAAGCCCTGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061326.5 |
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| CDS-3UTR GCA 90 bp | GTAGTTTATTGTCTTCAAGACTACAGTGTGGATTCCTCTCCCAGAGAAGGGTCTGCTCAAACTCCTGGTTaGCCCATGTGTAGATCAGGT | + |
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Preference number: 4 (lower is better) Translates to: VVYCLQDYSVDSSPREGSAQTPG*PMCRSG Trigger: ACCTGATCTACACATGGGGCAACCAGGAGTTTGAGC...AGACCCTTCTCTGGGAGAGGAATCCACACTGTAGTCTTGAAGACAATAAACTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000061326.5 ENSMUST00000109019.8 ENSMUST00000109021.4 |
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| CDS-3UTR GCA 90 bp | GTTTATTGTCTTCAAGACTACAGTGTGGATTCCTCTCCCAGAGAAGGGTCTTTCGCTCAAACTCCTGGTTaGCCCATGTGTAGATCAGGT | + |
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Preference number: 4 (lower is better) Translates to: VYCLQDYSVDSSPREGSFAQTPG*PMCRSG Trigger: ACCTGATCTACACATGGGGCAACCAGGAGTTTGAGC...GAAAGACCCTTCTCTGGGAGAGGAATCCACACTGTAGTCTTGAAGACAATAAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000061326.5 ENSMUST00000109019.8 ENSMUST00000109021.4 |
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| CDS-3UTR GCA 90 bp | AGTTTATTGTCTTCAAGACTACAGTGTGGATTCCTCTCCCAGAGAAGGGTCTTTGCTCAAACTCCTGGTTaGCCCATGTGTAGATCAGGT | + |
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Preference number: 4 (lower is better) Translates to: SLLSSRLQCGFLSQRRVFAQTPG*PMCRSG Trigger: ACCTGATCTACACATGGGGCAACCAGGAGTTTGAGC...AAAGACCCTTCTCTGGGAGAGGAATCCACACTGTAGTCTTGAAGACAATAAACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000061326.5 ENSMUST00000109019.8 ENSMUST00000109021.4 |
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| 3UTR CAA 72 bp | ACACAAAGTCACAAAGGGAAGTCCATAAGTAGTTTATaGTCTTCAAGACTACAGTGTGGATTCCTCTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: TQSHKGKSISSL*SSRLQCGFLSQ Trigger: CTGGGAGAGGAATCCACACTGTAGTCTTGAAGACAATAAACTACTTATGGACTTCCCTTTGTGACTTTGTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061326.5 |
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| 3UTR CAA 72 bp | AGCTATTTCCCATTTGCCTCACAGTCTAAGCAACTATaGTTGGAAGTCATTTGCTCTCTTCTGAGAACTTTT | + |
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Preference number: 4 (lower is better) Translates to: SYFPFASQSKQL*LEVICSLLRTF Trigger: AAAAGTTCTCAGAAGAGAGCAAATGACTTCCAACAATAGTTGCTTAGACTGTGAGGCAAATGGGAAATAGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061326.5 |
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| CDS-3UTR CAA 90 bp | GGATTGCCAACCACACCCACCCTATCATCTCTAGGTGAGGAGAAACTAAAGACAGTGCGGCGCAGCACGTaGGGGATGCCTTTGCTGAAA | + |
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Preference number: 5 (lower is better) Translates to: GLPTTPTLSSLGEEKLKTVRRST*GMPLLK Trigger: TTTCAGCAAAGGCATCCCCAACGTGCTGCGCCGCAC...TGTCTTTAGTTTCTCCTCACCTAGAGATGATAGGGTGGGTGTGGTTGGCAATCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061326.5 |
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| CDS-3UTR CAA 90 bp | GTAGTTTATTGTCTTCAAGACTACAGTGTGGATTCCTCTCCCAGAGAAGGGTCTGTGCGGCGCAGCACGTaGGGGATGCCTTTGCTGAAA | + |
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Preference number: 5 (lower is better) Translates to: VVYCLQDYSVDSSPREGSVRRST*GMPLLK Trigger: TTTCAGCAAAGGCATCCCCAACGTGCTGCGCCGCAC...AGACCCTTCTCTGGGAGAGGAATCCACACTGTAGTCTTGAAGACAATAAACTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061326.5 ENSMUST00000109021.4 |
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| CDS GCA 72 bp | GGTAGACCACTACAAACGGCGGCGCCACGCGCAGGATaGGCTCGCGAGTGCGGCGCAGCACGTTGGGGATGC | + |
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Preference number: 6 (lower is better) Translates to: GRPLQTAAPRAG*ARECGAARWGC Trigger: GCATCCCCAACGTGCTGCGCCGCACTCGCGAGCGCATCCTGCGCGTGGCGCCGCCGTTTGTAGTGGTCTACC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061326.5 ENSMUST00000109021.4 |
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