Pregenerated sensors for UQCRH (Mus musculus)

Ensembl gene IDs: ENSMUSG00000063882

Ensembl transcript IDs: ENSMUST00000050580.11, ENSMUST00000078676.6

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR TCA 90 bp	ATTAAGATGAAGTCACTGCTAGTCACACAGAAGAGAAGCTACCGCCAAAGTCAGACAAGGAACTGTTCCTaGTTCCCAGTGACAAGGCTG	+
Preference number: 2 (lower is better) Translates to: IKMKSLLVTQKRSYRQSQTRNCS*FPVTRL Trigger: CAGCCTTGTCACTGGGAATCAGGAACAGTTCCTTGT...CTGACTTTGGCGGTAGCTTCTCTTCTGTGTGACTAGCAGTGACTTCATCTTAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050580.11 ENSMUST00000078676.6
CDS-3UTR TCA 90 bp	ATTAAGATGAAGTCACTGCTAGTCACACAGAAGAGAAGCTACCGCCAAAGTCAGATCCTCTTCTGTCTGTaGCCGGGAAGACACGCGATT	+
Preference number: 4 (lower is better) Translates to: IKMKSLLVTQKRSYRQSQILFCL*PGRHAI Trigger: AATCGCGTGTCTTCCCGGTCACAGACAGAAGAGGAT...CTGACTTTGGCGGTAGCTTCTCTTCTGTGTGACTAGCAGTGACTTCATCTTAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078676.6
CDS-3UTR CCA 90 bp	ATTAAGATGAAGTCACTGCTAGTCACACAGAAGAGAAGCTACCGCCAAAGTCAGTTTTTAAAGAGCTTGTaGGCCACACAGTGGTCCCGT	+
Preference number: 4 (lower is better) Translates to: IKMKSLLVTQKRSYRQSQFLKSL*ATQWSR Trigger: ACGGGACCACTGTGTGGCCCACAAGCTCTTTAAAAA...CTGACTTTGGCGGTAGCTTCTCTTCTGTGTGACTAGCAGTGACTTCATCTTAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050580.11 ENSMUST00000078676.6
CDS-3UTR CAA 90 bp	ATTAAGATGAAGTCACTGCTAGTCACACAGAAGAGAAGCTACCGCCAAAGTCAGTCCTCTTCTTCCTCTTaGGGGTCTCCAGATCCAGTG	+
Preference number: 5 (lower is better) Translates to: IKMKSLLVTQKRSYRQSQSSSSS*GSPDPV Trigger: CACTGGATCTGGAGACCCCAAAGAGGAAGAAGAGGA...CTGACTTTGGCGGTAGCTTCTCTTCTGTGTGACTAGCAGTGACTTCATCTTAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050580.11 ENSMUST00000078676.6
CDS-3UTR CAA 90 bp	ATTAAGATGAAGTCACTGCTAGTCACACAGAAGAGAAGCTACCGCCAAAGTCAGAAGTTTTTAAAGAGCTaGTGGGCCACACAGTGGTCC	+
Preference number: 5 (lower is better) Translates to: IKMKSLLVTQKRSYRQSQKFLKS*WATQWS Trigger: GGACCACTGTGTGGCCCACAAGCTCTTTAAAAACTT...CTGACTTTGGCGGTAGCTTCTCTTCTGTGTGACTAGCAGTGACTTCATCTTAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050580.11 ENSMUST00000078676.6
CDS CAA 90 bp	CTCACTGTTGTTAGGGGGTCCACTAGTTCTTCCTCTTCTTCCTCTTaGGGGTCTCCAGATCCAGTGAGCATCTTTCGTTCGTCCTCTAGT	+
Preference number: 6 (lower is better) Translates to: LTVVRGSTSSSSSSS*GSPDPVSIFRSSSS Trigger: ACTAGAGGACGAACGAAAGATGCTCACTGGATCTGGAGACCCCAAAGAGGAAGAAGAGGAAGAACTAGTGGACCCCCTAACAACAGTGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078676.6

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu