Pregenerated sensors for UQCRFS1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038462Ensembl transcript IDs: ENSMUST00000042834.4
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | AACCTAGACGTACACAAGGCTTACTCTCCACTCTTCTaGGGGGACCTGAAGACCGACAGAAACCTAGGCCCT | + |
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Preference number: 3 (lower is better) Translates to: NLDVHKAYSPLF*GDLKTDRNLGP Trigger: AGGGCCTAGGTTTCTGTCGGTCTTCAGGTCCCCTCAGAAGAGTGGAGAGTAAGCCTTGTGTACGTCTAGGTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042834.4 |
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| CDS-3UTR TCA 90 bp | AAAGACATTGCACCTTTCAAGTCTATGACTGAATCTAATGATGTTCAACAGTGGGTGCAGGGCCCTTCCTaGTCCTGCCAGAGGCGTCAT | + |
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Preference number: 4 (lower is better) Translates to: KDIAPFKSMTESNDVQQWVQGPS*SCQRRH Trigger: ATGACGCCTCTGGCAGGATCAGGAAGGGCCCTGCAC...CCACTGTTGAACATCATTAGATTCAGTCATAGACTTGAAAGGTGCAATGTCTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042834.4 |
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| CDS-3UTR TCA 90 bp | ATCAAAGACATTGCACCTTTCAAGTCTATGACTGAATCTAATGATGTTCAACAGCAGGCACTTCCAGGTTaGGAGGTGCAGGGCCCTTCC | + |
|
Preference number: 4 (lower is better) Translates to: IKDIAPFKSMTESNDVQQQALPG*EVQGPS Trigger: GGAAGGGCCCTGCACCTCTCAACCTGGAAGTGCCTG...CTGTTGAACATCATTAGATTCAGTCATAGACTTGAAAGGTGCAATGTCTTTGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042834.4 |
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| CDS-3UTR CCA 90 bp | AACCAACCTAGACGTACACAAGGCTTACTCTCCACTCTTCTGAGGGGACCTGAAACCTTGACATCTGTATaGGAAAAACGGACAGAAGCA | + |
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Preference number: 4 (lower is better) Translates to: NQPRRTQGLLSTLLRGPETLTSV*EKRTEA Trigger: TGCTTCTGTCCGTTTTTCCCATACAGATGTCAAGGT...TTCAGGTCCCCTCAGAAGAGTGGAGAGTAAGCCTTGTGTACGTCTAGGTTGGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042834.4 |
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| CDS-3UTR GCA 90 bp | AAAGACATTGCACCTTTCAAGTCTATGACTGAATCTAATGATGTTCAACAGTGGCTGGGACACTTCGACTaGAGCTTCCTGGTCAATCTC | + |
|
Preference number: 4 (lower is better) Translates to: KDIAPFKSMTESNDVQQWLGHFD*SFLVNL Trigger: GAGATTGACCAGGAAGCTGCAGTCGAAGTGTCCCAG...CCACTGTTGAACATCATTAGATTCAGTCATAGACTTGAAAGGTGCAATGTCTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042834.4 |
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| CDS-3UTR CCA 90 bp | ATCAAAGACATTGCACCTTTCAAGTCTATGACTGAATCTAATGATGTTCAACAGCTCCTGCGTTTGCAATaGGTACACAACCAAGATGAG | + |
|
Preference number: 4 (lower is better) Translates to: IKDIAPFKSMTESNDVQQLLRLQ*VHNQDE Trigger: CTCATCTTGGTTGTGTACCCATTGCAAACGCAGGAG...CTGTTGAACATCATTAGATTCAGTCATAGACTTGAAAGGTGCAATGTCTTTGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042834.4 |
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| CDS-3UTR CCA 90 bp | ATCAAAGACATTGCACCTTTCAAGTCTATGACTGAATCTAATGATGTTCAACAGGGTCAATCTCCTTCTTaGTTCTATGGCGCACAAACA | + |
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Preference number: 4 (lower is better) Translates to: IKDIAPFKSMTESNDVQQGQSPS*FYGAQT Trigger: TGTTTGTGCGCCATAGAACCAAGAAGGAGATTGACC...CTGTTGAACATCATTAGATTCAGTCATAGACTTGAAAGGTGCAATGTCTTTGAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042834.4 |
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| CDS-3UTR GCA 90 bp | ATCAAAGACATTGCACCTTTCAAGTCTATGACTGAATCTAATGATGTTCAACAGACCCACAGTAGTAGTTaGAGTTACCAGGTAAGAGAA | + |
|
Preference number: 4 (lower is better) Translates to: IKDIAPFKSMTESNDVQQTHSSS*SYQVRE Trigger: TTCTCTTACCTGGTAACTGCAACTACTACTGTGGGT...CTGTTGAACATCATTAGATTCAGTCATAGACTTGAAAGGTGCAATGTCTTTGAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042834.4 |
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| CDS-3UTR CAA 90 bp | AAAGACATTGCACCTTTCAAGTCTATGACTGAATCTAATGATGTTCAACAGTGGGCAGGCACTTCCAGGTaGAGAGGTGCAGGGCCCTTC | + |
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Preference number: 5 (lower is better) Translates to: KDIAPFKSMTESNDVQQWAGTSR*RGAGPF Trigger: GAAGGGCCCTGCACCTCTCAACCTGGAAGTGCCTGC...CCACTGTTGAACATCATTAGATTCAGTCATAGACTTGAAAGGTGCAATGTCTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042834.4 |
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| CDS-3UTR CAA 90 bp | AAAGACATTGCACCTTTCAAGTCTATGACTGAATCTAATGATGTTCAACAGTGGGAGAAGTCGGGCACCTaGACATCTGTATGGGAAAAA | + |
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Preference number: 5 (lower is better) Translates to: KDIAPFKSMTESNDVQQWEKSGT*TSVWEK Trigger: TTTTTCCCATACAGATGTCAAGGTGCCCGACTTCTC...CCACTGTTGAACATCATTAGATTCAGTCATAGACTTGAAAGGTGCAATGTCTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042834.4 |
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