Pregenerated sensors for UQCR11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020163Ensembl transcript IDs: ENSMUST00000020372.6
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAGTGTCCAGCTTCCTCAGTGTCTTCCACAGGACTACGCTGTGTCTaGGGCCTCGGCACATGGTACCATCGAGGCCTGTGGTGGGGGAGG | + |
|
Preference number: 1 (lower is better) Translates to: QCPASSVSSTGLRCV*GLGTWYHRGLWWGR Trigger: CCTCCCCCACCACAGGCCTCGATGGTACCATGTGCCGAGGCCTCAGACACAGCGTAGTCCTGTGGAAGACACTGAGGAAGCTGGACACTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020372.6 |
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| 3UTR-3UTR TCA 90 bp | CCTAGTGTCTGTCAACATGGAAGCTCCCTGAGCGGTGCAGACCTCTCCAGTGTCGGACTACGCTGTGTCTaGGGCCTCGGCACATGGTAC | + |
|
Preference number: 2 (lower is better) Translates to: PSVCQHGSSLSGADLSSVGLRCV*GLGTWY Trigger: GTACCATGTGCCGAGGCCTCAGACACAGCGTAGTCC...GACACTGGAGAGGTCTGCACCGCTCAGGGAGCTTCCATGTTGACAGACACTAGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020372.6 |
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| 3UTR TCA 72 bp | GCTTCCTCAGTGTCTTCCACAGGACTACGCTGTGTCTaGGGCCTCGGCACATGGTACCATCGAGGCCTGTGG | + |
|
Preference number: 3 (lower is better) Translates to: ASSVSSTGLRCV*GLGTWYHRGLW Trigger: CCACAGGCCTCGATGGTACCATGTGCCGAGGCCTCAGACACAGCGTAGTCCTGTGGAAGACACTGAGGAAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020372.6 |
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| CDS-3UTR CCA 90 bp | ACCTCTCCAGTGTCCAGCTTCCTCAGTGTCTTCCACAGGACTACGCTGTGTCTGTCAGCCGCCAGTCCGTaGCCCACACCAGTCCCACGG | + |
|
Preference number: 4 (lower is better) Translates to: TSPVSSFLSVFHRTTLCLSAASP*PTPVPR Trigger: CCGTGGGACTGGTGTGGGCCACGGACTGGCGGCTGA...CAGACACAGCGTAGTCCTGTGGAAGACACTGAGGAAGCTGGACACTGGAGAGGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020372.6 |
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