Pregenerated sensors for UPK3BL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000006143Ensembl transcript IDs: ENSMUST00000006303.11, ENSMUST00000111137.8, ENSMUST00000122979.2, ENSMUST00000156530.8
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATTTCCCTAGGGTTCCAGGTAGGTCCCAGCTCAGGCTCAGCAACTTaGTCCCAGATGAAAGCCCTGGGAAACTCTCAGGAGCTGCGCTCA | + |
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Preference number: 1 (lower is better) Translates to: ISLGFQVGPSSGSAT*SQMKALGNSQELRS Trigger: TGAGCGCAGCTCCTGAGAGTTTCCCAGGGCTTTCATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACCTGGAACCCTAGGGAAAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122979.2 |
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| 3UTR CAA 90 bp | TATTTCCCTAGGGTTCCAGGTAGGTCCCAGCTCAGGCTCAGCAACTaGATCCCAGATGAAAGCCCTGGGAAACTCTCAGGAGCTGCGCTC | + |
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Preference number: 2 (lower is better) Translates to: YFPRVPGRSQLRLSN*IPDESPGKLSGAAL Trigger: GAGCGCAGCTCCTGAGAGTTTCCCAGGGCTTTCATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACCTGGAACCCTAGGGAAATA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122979.2 |
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| 3UTR-3UTR TCA 90 bp | CCAGGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATGAAAGCCCTGGGCTGAGATCTCTTTCATaGACACAGTTCAGTCCGCTC | + |
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Preference number: 2 (lower is better) Translates to: PGRSQLRLSNLIPDESPGLRSLS*TQFSPL Trigger: GAGCGGACTGAACTGTGTTCATGAAAGAGATCTCAG...CCCAGGGCTTTCATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACCTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122979.2 |
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| 3UTR-3UTR GCA 90 bp | TTCCCTAGGGTTCCAGGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATATTTCTGATAAAGATTaGCTAGTCCAAGCTTTGAAC | + |
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Preference number: 2 (lower is better) Translates to: FPRVPGRSQLRLSNLIPDISDKD*LVQALN Trigger: GTTCAAAGCTTGGACTAGGCAATCTTTATCAGAAAT...ATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACCTGGAACCCTAGGGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000122979.2 ENSMUST00000156530.8 |
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| 3UTR-3UTR CAA 90 bp | CCAGGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATGAAAGCCCTGGGCTCAGGCTCAGCAACTaGATCCCAGATGAAAGCCCT | + |
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Preference number: 3 (lower is better) Translates to: PGRSQLRLSNLIPDESPGLRLSN*IPDESP Trigger: AGGGCTTTCATCTGGGATCAAGTTGCTGAGCCTGAG...CCCAGGGCTTTCATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000122979.2 ENSMUST00000156530.8 |
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| 3UTR-3UTR CAA 90 bp | TTCCCTAGGGTTCCAGGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATCTCAGGCTCAGCAACTaGATCCCAGATGAAAGCCCT | + |
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Preference number: 3 (lower is better) Translates to: FPRVPGRSQLRLSNLIPDLRLSN*IPDESP Trigger: AGGGCTTTCATCTGGGATCAAGTTGCTGAGCCTGAG...ATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACCTGGAACCCTAGGGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000122979.2 ENSMUST00000156530.8 |
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| 3UTR TCA 72 bp | ACTCAAGCTGCTGATGTGGGGCGCTTAGAGAATAACTaGGATCTCTTTCATGAACACAGTTCAGTCCGCTCA | + |
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Preference number: 3 (lower is better) Translates to: TQAADVGRLENN*DLFHEHSSVRS Trigger: TGAGCGGACTGAACTGTGTTCATGAAAGAGATCTCAGTTATTCTCTAAGCGCCCCACATCAGCAGCTTGAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122979.2 |
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| 3UTR TCA 72 bp | ATTTCTGATAAAGATTGCCTAGTCCAAGCTTTGAACTaGAGATATTTCCCTAGGGTTCCAGGTAGGTCCCAG | + |
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Preference number: 3 (lower is better) Translates to: ISDKDCLVQALN*RYFPRVPGRSQ Trigger: CTGGGACCTACCTGGAACCCTAGGGAAATATCTTCAGTTCAAAGCTTGGACTAGGCAATCTTTATCAGAAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000122979.2 ENSMUST00000156530.8 |
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| CDS-3UTR GCA 90 bp | GGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATGAAAGCCCTGGGAAACCGCCTGGGCTGGGCTaGCTGAGGCTGCTCCCGGAG | + |
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Preference number: 4 (lower is better) Translates to: GRSQLRLSNLIPDESPGKPPGLG*LRLLPE Trigger: CTCCGGGAGCAGCCTCAGGCAGCCCAGCCCAGGCGG...TTTCCCAGGGCTTTCATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111137.8 ENSMUST00000156530.8 |
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| CDS-3UTR CCA 90 bp | CCAGGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATGAAAGCCCTGGGACGGACTGTTTCCCGTaGGGCCCCATGGCTGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: PGRSQLRLSNLIPDESPGTDCFP*GPMAGL Trigger: CAGCCCAGCCATGGGGCCCCACGGGAAACAGTCCGT...CCCAGGGCTTTCATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACCTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111137.8 ENSMUST00000156530.8 |
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| CDS-3UTR TCA 90 bp | CCAGGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATGAAAGCCCTGGGGCCCCATGGCTGGGCTaGGTTTCCAGCTGCTGTCCT | + |
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Preference number: 4 (lower is better) Translates to: PGRSQLRLSNLIPDESPGAPWLG*VSSCCP Trigger: AGGACAGCAGCTGGAAACTCAGCCCAGCCATGGGGC...CCCAGGGCTTTCATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACCTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111137.8 ENSMUST00000156530.8 |
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| CDS-3UTR GCA 90 bp | TTCCCTAGGGTTCCAGGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATCTGTGCAGCCCCAGCTaGTCTGTCCGCCTGGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: FPRVPGRSQLRLSNLIPDLCSPS*SVRLGW Trigger: CCAGCCCAGGCGGACAGAGCAGCTGGGGCTGCACAG...ATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACCTGGAACCCTAGGGAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111137.8 ENSMUST00000156530.8 |
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| CDS-3UTR GCA 90 bp | CCAGGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATGAAAGCCCTGGGCCAGGTCCTCTACTGTaGAGCCCCAGCTGCTCTGTC | + |
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Preference number: 4 (lower is better) Translates to: PGRSQLRLSNLIPDESPGPGPLL*SPSCSV Trigger: GACAGAGCAGCTGGGGCTGCACAGTAGAGGACCTGG...CCCAGGGCTTTCATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACCTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111137.8 ENSMUST00000156530.8 |
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| CDS-3UTR CCA 90 bp | GGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATGAAAGCCCTGGGAAAACGGACTGTTTCCCGTaGGGCCCCATGGCTGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: GRSQLRLSNLIPDESPGKTDCFP*GPMAGL Trigger: CAGCCCAGCCATGGGGCCCCACGGGAAACAGTCCGT...TTTCCCAGGGCTTTCATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111137.8 ENSMUST00000156530.8 |
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| CDS-3UTR TCA 90 bp | TTCCCTAGGGTTCCAGGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATGCCCCATGGCTGGGCTaGGTTTCCAGCTGCTGTCCT | + |
|
Preference number: 4 (lower is better) Translates to: FPRVPGRSQLRLSNLIPDAPWLG*VSSCCP Trigger: AGGACAGCAGCTGGAAACTCAGCCCAGCCATGGGGC...ATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACCTGGAACCCTAGGGAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111137.8 ENSMUST00000156530.8 |
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| CDS-3UTR GCA 90 bp | CCAGGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATGAAAGCCCTGGGTGTGATAGTGCCGCATaGGCACTTGCTCCTCTGGGC | + |
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Preference number: 4 (lower is better) Translates to: PGRSQLRLSNLIPDESPGCDSAA*ALAPLG Trigger: GCCCAGAGGAGCAAGTGCGCATGCGGCACTATCACA...CCCAGGGCTTTCATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACCTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000156530.8 |
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| CDS-3UTR CCA 90 bp | CCAGGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATGAAAGCCCTGGGGGCGAGTTACAGCCCTaGGACTCCAGGGAACAGTTG | + |
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Preference number: 4 (lower is better) Translates to: PGRSQLRLSNLIPDESPGGELQP*DSREQL Trigger: CAACTGTTCCCTGGAGTCCCAGGGCTGTAACTCGCC...CCCAGGGCTTTCATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACCTGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000122979.2 ENSMUST00000156530.8 |
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| CDS-3UTR CCA 90 bp | TTCCCTAGGGTTCCAGGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATATAGGGGCCGGCCCCTaGCAAAGGCGAGTTACAGCC | + |
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Preference number: 4 (lower is better) Translates to: FPRVPGRSQLRLSNLIPDIGAGP*QRRVTA Trigger: GGCTGTAACTCGCCTTTGCCAGGGGCCGGCCCCTAT...ATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACCTGGAACCCTAGGGAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000122979.2 ENSMUST00000156530.8 |
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| CDS-3UTR CCA 90 bp | GGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATGAAAGCCCTGGGAAAATAGGGGCCGGCCCCTaGCAAAGGCGAGTTACAGCC | + |
|
Preference number: 4 (lower is better) Translates to: GRSQLRLSNLIPDESPGKIGAGP*QRRVTA Trigger: GGCTGTAACTCGCCTTTGCCAGGGGCCGGCCCCTAT...TTTCCCAGGGCTTTCATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000122979.2 ENSMUST00000156530.8 |
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| CDS-3UTR CCA 90 bp | TTCCCTAGGGTTCCAGGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATACAGTGCCCTTGCCCTaGGACCCTGGAGCTTCTCGG | + |
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Preference number: 4 (lower is better) Translates to: FPRVPGRSQLRLSNLIPDTVPLP*DPGASR Trigger: CCGAGAAGCTCCAGGGTCCCAGGGCAAGGGCACTGT...ATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACCTGGAACCCTAGGGAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000122979.2 ENSMUST00000156530.8 |
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| CDS-3UTR CCA 90 bp | GGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATGAAAGCCCTGGGAAAACAGTGCCCTTGCCCTaGGACCCTGGAGCTTCTCGG | + |
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Preference number: 4 (lower is better) Translates to: GRSQLRLSNLIPDESPGKTVPLP*DPGASR Trigger: CCGAGAAGCTCCAGGGTCCCAGGGCAAGGGCACTGT...TTTCCCAGGGCTTTCATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000122979.2 ENSMUST00000156530.8 |
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| CDS-3UTR CCA 90 bp | GGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATGAAAGCCCTGGGAAACGGAGGCTGCTACTTTaGGGTCCTCCCTCCTCCCCT | + |
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Preference number: 4 (lower is better) Translates to: GRSQLRLSNLIPDESPGKRRLLL*GPPSSP Trigger: AGGGGAGGAGGGAGGACCCCAAAGTAGCAGCCTCCG...TTTCCCAGGGCTTTCATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111137.8 ENSMUST00000156530.8 |
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| CDS-3UTR GCA 90 bp | TTCCCTAGGGTTCCAGGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATCCAGGTCCTCTACTGTaGAGCCCCAGCTGCTCTGTC | + |
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Preference number: 4 (lower is better) Translates to: FPRVPGRSQLRLSNLIPDPGPLL*SPSCSV Trigger: GACAGAGCAGCTGGGGCTGCACAGTAGAGGACCTGG...ATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACCTGGAACCCTAGGGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111137.8 ENSMUST00000156530.8 |
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| CDS-3UTR CCA 90 bp | TCCCAGCTCAGGCTCAGCAACTTGATCCCAGATGAAAGCCCTGGGAAACTCTCAATAGGGGCCGGCCCCTaGCAAAGGCGAGTTACAGCC | + |
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Preference number: 4 (lower is better) Translates to: SQLRLSNLIPDESPGKLSIGAGP*QRRVTA Trigger: GGCTGTAACTCGCCTTTGCCAGGGGCCGGCCCCTAT...TGAGAGTTTCCCAGGGCTTTCATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000122979.2 |
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| CDS-3UTR CCA 90 bp | TCCCAGCTCAGGCTCAGCAACTTGATCCCAGATGAAAGCCCTGGGAAACTCTCAACAGTGCCCTTGCCCTaGGACCCTGGAGCTTCTCGG | + |
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Preference number: 4 (lower is better) Translates to: SQLRLSNLIPDESPGKLSTVPLP*DPGASR Trigger: CCGAGAAGCTCCAGGGTCCCAGGGCAAGGGCACTGT...TGAGAGTTTCCCAGGGCTTTCATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122979.2 |
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| CDS-3UTR GCA 90 bp | CCAGGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATGAAAGCCCTGGGAAGTTGGCAGGGGCATaGCTGTCTTCTACCTTCCGT | + |
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Preference number: 4 (lower is better) Translates to: PGRSQLRLSNLIPDESPGKLAGA*LSSTFR Trigger: ACGGAAGGTAGAAGACAGGCATGCCCCTGCCAACTT...CCCAGGGCTTTCATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACCTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000156530.8 |
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| CDS-3UTR GCA 90 bp | GGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATGAAAGCCCTGGGAAATGTGATAGTGCCGCATaGGCACTTGCTCCTCTGGGC | + |
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Preference number: 4 (lower is better) Translates to: GRSQLRLSNLIPDESPGKCDSAA*ALAPLG Trigger: GCCCAGAGGAGCAAGTGCGCATGCGGCACTATCACA...TTTCCCAGGGCTTTCATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000156530.8 |
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| CDS-3UTR CCA 90 bp | CCAGGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATGAAAGCCCTGGGTTGACGTTCTTGAATTaGCCCAGGGGTTGCTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: PGRSQLRLSNLIPDESPGLTFLN*PRGCSS Trigger: GCTGGAGCAACCCCTGGGCCAATTCAAGAACGTCAA...CCCAGGGCTTTCATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACCTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000156530.8 |
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| CDS-3UTR CCA 90 bp | TCCCAGCTCAGGCTCAGCAACTTGATCCCAGATGAAAGCCCTGGGAAACTCTCAGGCGAGTTACAGCCCTaGGACTCCAGGGAACAGTTG | + |
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Preference number: 4 (lower is better) Translates to: SQLRLSNLIPDESPGKLSGELQP*DSREQL Trigger: CAACTGTTCCCTGGAGTCCCAGGGCTGTAACTCGCC...TGAGAGTTTCCCAGGGCTTTCATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122979.2 |
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| CDS-3UTR CCA 90 bp | CCAGGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATGAAAGCCCTGGGTCCCCTAAAACTGGTTaGACAGGTTCAGAGGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: PGRSQLRLSNLIPDESPGSPKTG*TGSEAE Trigger: CTCAGCCTCTGAACCTGTCCAACCAGTTTTAGGGGA...CCCAGGGCTTTCATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111137.8 |
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| CDS-3UTR GCA 90 bp | TTCCCTAGGGTTCCAGGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATAAGTTGGCAGGGGCATaGCTGTCTTCTACCTTCCGT | + |
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Preference number: 4 (lower is better) Translates to: FPRVPGRSQLRLSNLIPDKLAGA*LSSTFR Trigger: ACGGAAGGTAGAAGACAGGCATGCCCCTGCCAACTT...ATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACCTGGAACCCTAGGGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000156530.8 |
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| CDS-3UTR CCA 90 bp | GGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATGAAAGCCCTGGGAAATTGACGTTCTTGAATTaGCCCAGGGGTTGCTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: GRSQLRLSNLIPDESPGKLTFLN*PRGCSS Trigger: GCTGGAGCAACCCCTGGGCCAATTCAAGAACGTCAA...TTTCCCAGGGCTTTCATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000156530.8 |
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| CDS-3UTR CCA 90 bp | TTCCCTAGGGTTCCAGGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATTTGACGTTCTTGAATTaGCCCAGGGGTTGCTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: FPRVPGRSQLRLSNLIPDLTFLN*PRGCSS Trigger: GCTGGAGCAACCCCTGGGCCAATTCAAGAACGTCAA...ATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACCTGGAACCCTAGGGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000156530.8 |
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| CDS-3UTR CCA 90 bp | TTCCCTAGGGTTCCAGGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATAGACCACAAGCAGGATaGCCAGTAGGATTGACAAGA | + |
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Preference number: 4 (lower is better) Translates to: FPRVPGRSQLRLSNLIPDRPQAG*PVGLTR Trigger: TCTTGTCAATCCTACTGGCCATCCTGCTTGTGGTCT...ATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACCTGGAACCCTAGGGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000122979.2 ENSMUST00000156530.8 |
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| CDS-3UTR CCA 90 bp | CTCTTTCATGAACACAGTTCAGTCCGCTCATTTTCCATATCCCTTGTGCAATGGAGACCACAAGCAGGATaGCCAGTAGGATTGACAAGA | + |
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Preference number: 4 (lower is better) Translates to: LFHEHSSVRSFSISLVQWRPQAG*PVGLTR Trigger: TCTTGTCAATCCTACTGGCCATCCTGCTTGTGGTCT...CCATTGCACAAGGGATATGGAAAATGAGCGGACTGAACTGTGTTCATGAAAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122979.2 |
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| CDS CCA 90 bp | TCCTTCCAGGTCCTCTACTGTGCAGCCCCAGCTGCTCTGTCCGCCTaGGCTGGGCTGCCTGAGGCTGCTCCCGGAGGCTGCTACTTTGGG | + |
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Preference number: 5 (lower is better) Translates to: SFQVLYCAAPAALSA*AGLPEAAPGGCYFG Trigger: CCCAAAGTAGCAGCCTCCGGGAGCAGCCTCAGGCAGCCCAGCCCAGGCGGACAGAGCAGCTGGGGCTGCACAGTAGAGGACCTGGAAGGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111137.8 ENSMUST00000156530.8 |
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| CDS TCA 90 bp | GCATTCGCAGCACGGACTGTTTCCCGTGGGGCCCCATGGCTGGGCTaGGTTTCCAGCTGCTGTCCTTCCTTCCAGGTCCTCTACTGTGCA | + |
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Preference number: 5 (lower is better) Translates to: AFAARTVSRGAPWLG*VSSCCPSFQVLYCA Trigger: TGCACAGTAGAGGACCTGGAAGGAAGGACAGCAGCTGGAAACTCAGCCCAGCCATGGGGCCCCACGGGAAACAGTCCGTGCTGCGAATGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111137.8 ENSMUST00000156530.8 |
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| CDS CCA 90 bp | CTCGGCACTCATCGCCAGGAATTTCACTCTATAGGGGCCGGCCCCTaGCAAAGGCGAGTTACAGCCCTGGGACTCCAGGGAACAGTTGTT | + |
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Preference number: 5 (lower is better) Translates to: LGTHRQEFHSIGAGP*QRRVTALGLQGTVV Trigger: AACAACTGTTCCCTGGAGTCCCAGGGCTGTAACTCGCCTTTGCCAGGGGCCGGCCCCTATAGAGTGAAATTCCTGGCGATGAGTGCCGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000122979.2 ENSMUST00000156530.8 |
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| CDS-3UTR CAA 90 bp | CCAGGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATGAAAGCCCTGGGCCATTGCGGTCAAAGTaGGCAGGGGCATGCCTGTCT | + |
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Preference number: 5 (lower is better) Translates to: PGRSQLRLSNLIPDESPGPLRSK*AGACLS Trigger: AGACAGGCATGCCCCTGCCAACTTTGACCGCAATGG...CCCAGGGCTTTCATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACCTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000156530.8 |
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| CDS-3UTR CAA 90 bp | TTCCCTAGGGTTCCAGGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATATGACCACAGTGCCCTaGCCCTGGGACCCTGGAGCT | + |
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Preference number: 5 (lower is better) Translates to: FPRVPGRSQLRLSNLIPDMTTVP*PWDPGA Trigger: AGCTCCAGGGTCCCAGGGCAAGGGCACTGTGGTCAT...ATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACCTGGAACCCTAGGGAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000122979.2 ENSMUST00000156530.8 |
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| CDS-3UTR CAA 90 bp | GGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATGAAAGCCCTGGGAAAATGACCACAGTGCCCTaGCCCTGGGACCCTGGAGCT | + |
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Preference number: 5 (lower is better) Translates to: GRSQLRLSNLIPDESPGKMTTVP*PWDPGA Trigger: AGCTCCAGGGTCCCAGGGCAAGGGCACTGTGGTCAT...TTTCCCAGGGCTTTCATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000122979.2 ENSMUST00000156530.8 |
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| CDS-3UTR CAA 90 bp | CCAGGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATGAAAGCCCTGGGTCGGAATGTCTGGGCTaGCTGCAGGTAGATCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: PGRSQLRLSNLIPDESPGSECLG*LQVDLL Trigger: GAGGAGATCTACCTGCAGCAAGCCCAGACATTCCGA...CCCAGGGCTTTCATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000122979.2 ENSMUST00000156530.8 |
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| CDS-3UTR CAA 90 bp | GGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATGAAAGCCCTGGGAAACCATTGCGGTCAAAGTaGGCAGGGGCATGCCTGTCT | + |
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Preference number: 5 (lower is better) Translates to: GRSQLRLSNLIPDESPGKPLRSK*AGACLS Trigger: AGACAGGCATGCCCCTGCCAACTTTGACCGCAATGG...TTTCCCAGGGCTTTCATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000156530.8 |
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| CDS-3UTR CAA 90 bp | TTCCCTAGGGTTCCAGGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATGAGAGGTTGACGTTCTaGAATTGGCCCAGGGGTTGC | + |
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Preference number: 5 (lower is better) Translates to: FPRVPGRSQLRLSNLIPDERLTF*NWPRGC Trigger: GCAACCCCTGGGCCAATTCAAGAACGTCAACCTCTC...ATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACCTGGAACCCTAGGGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000156530.8 |
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| CDS-3UTR CAA 90 bp | GGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATGAAAGCCCTGGGAAAGAGAGGTTGACGTTCTaGAATTGGCCCAGGGGTTGC | + |
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Preference number: 5 (lower is better) Translates to: GRSQLRLSNLIPDESPGKERLTF*NWPRGC Trigger: GCAACCCCTGGGCCAATTCAAGAACGTCAACCTCTC...TTTCCCAGGGCTTTCATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000156530.8 |
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| CDS-3UTR CAA 90 bp | GGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATGAAAGCCCTGGGAAATCGGAATGTCTGGGCTaGCTGCAGGTAGATCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: GRSQLRLSNLIPDESPGKSECLG*LQVDLL Trigger: GAGGAGATCTACCTGCAGCAAGCCCAGACATTCCGA...TTTCCCAGGGCTTTCATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000122979.2 ENSMUST00000156530.8 |
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| CDS-3UTR CAA 90 bp | TTCCCTAGGGTTCCAGGTAGGTCCCAGCTCAGGCTCAGCAACTTGATCCCAGATGACTCCAGGGAACAGTaGTTGTCATTCCCAACACGG | + |
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Preference number: 5 (lower is better) Translates to: FPRVPGRSQLRLSNLIPDDSREQ*LSFPTR Trigger: CCGTGTTGGGAATGACAACAACTGTTCCCTGGAGTC...ATCTGGGATCAAGTTGCTGAGCCTGAGCTGGGACCTACCTGGAACCCTAGGGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000122979.2 ENSMUST00000156530.8 |
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| CDS-3UTR CAA 90 bp | GAGATCTCTTTCATGAACACAGTTCAGTCCGCTCATTTTCCATATCCCTTGTGCATGACCACAGTGCCCTaGCCCTGGGACCCTGGAGCT | + |
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Preference number: 5 (lower is better) Translates to: EISFMNTVQSAHFPYPLCMTTVP*PWDPGA Trigger: AGCTCCAGGGTCCCAGGGCAAGGGCACTGTGGTCAT...GCACAAGGGATATGGAAAATGAGCGGACTGAACTGTGTTCATGAAAGAGATCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122979.2 |
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| CDS-3UTR CAA 90 bp | CTCTTTCATGAACACAGTTCAGTCCGCTCATTTTCCATATCCCTTGTGCAATGGTCGGAATGTCTGGGCTaGCTGCAGGTAGATCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: LFHEHSSVRSFSISLVQWSECLG*LQVDLL Trigger: GAGGAGATCTACCTGCAGCAAGCCCAGACATTCCGA...CCATTGCACAAGGGATATGGAAAATGAGCGGACTGAACTGTGTTCATGAAAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122979.2 |
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| CDS TCA 72 bp | GCACGGACTGTTTCCCGTGGGGCCCCATGGCTGGGCTaGGTTTCCAGCTGCTGTCCTTCCTTCCAGGTCCTC | + |
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Preference number: 6 (lower is better) Translates to: ARTVSRGAPWLG*VSSCCPSFQVL Trigger: GAGGACCTGGAAGGAAGGACAGCAGCTGGAAACTCAGCCCAGCCATGGGGCCCCACGGGAAACAGTCCGTGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111137.8 ENSMUST00000156530.8 |
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| CDS CCA 72 bp | TCGCAGCACGGACTGTTTCCCGTGGGGCCCCATGGCTaGGCTGAGTTTCCAGCTGCTGTCCTTCCTTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: SQHGLFPVGPHG*AEFPAAVLPSR Trigger: CCTGGAAGGAAGGACAGCAGCTGGAAACTCAGCCCAGCCATGGGGCCCCACGGGAAACAGTCCGTGCTGCGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111137.8 ENSMUST00000156530.8 |
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| CDS CAA 90 bp | AGTGCCCTTGCCCTGGGACCCTGGAGCTTCTCGGAATGTCTGGGCTaGCTGCAGGTAGATCTCCTCGGACCACAGTGTCTCAGCCACGGG | + |
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Preference number: 6 (lower is better) Translates to: SALALGPWSFSECLG*LQVDLLGPQCLSHG Trigger: CCCGTGGCTGAGACACTGTGGTCCGAGGAGATCTACCTGCAGCAAGCCCAGACATTCCGAGAAGCTCCAGGGTCCCAGGGCAAGGGCACT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000122979.2 ENSMUST00000156530.8 |
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| CDS CAA 90 bp | GCCCCTGGCAAAGGCGAGTTACAGCCCTGGGACTCCAGGGAACAGTaGTTGTCATTCCCAACACGGAGGACTCGGAGCTGGCTGTCAGGC | + |
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Preference number: 6 (lower is better) Translates to: APGKGELQPWDSREQ*LSFPTRRTRSWLSG Trigger: GCCTGACAGCCAGCTCCGAGTCCTCCGTGTTGGGAATGACAACAACTGTTCCCTGGAGTCCCAGGGCTGTAACTCGCCTTTGCCAGGGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000122979.2 ENSMUST00000156530.8 |
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| CDS CCA 72 bp | CATCGCCAGGAATTTCACTCTATAGGGGCCGGCCCCTaGCAAAGGCGAGTTACAGCCCTGGGACTCCAGGGA | + |
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Preference number: 6 (lower is better) Translates to: HRQEFHSIGAGP*QRRVTALGLQG Trigger: TCCCTGGAGTCCCAGGGCTGTAACTCGCCTTTGCCAGGGGCCGGCCCCTATAGAGTGAAATTCCTGGCGATG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000122979.2 ENSMUST00000156530.8 |
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| CDS CAA 72 bp | GCCCTGGGACCCTGGAGCTTCTCGGAATGTCTGGGCTaGCTGCAGGTAGATCTCCTCGGACCACAGTGTCTC | + |
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Preference number: 6 (lower is better) Translates to: ALGPWSFSECLG*LQVDLLGPQCL Trigger: GAGACACTGTGGTCCGAGGAGATCTACCTGCAGCAAGCCCAGACATTCCGAGAAGCTCCAGGGTCCCAGGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000122979.2 ENSMUST00000156530.8 |
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| CDS CAA 90 bp | CCTGGCAAAGGCGAGTTACAGCCCTGGGACTCCAGGGAACAGTTGTaGTCATTCCCAACACGGAGGACTCGGAGCTGGCTGTCAGGCTGG | + |
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Preference number: 6 (lower is better) Translates to: PGKGELQPWDSREQL*SFPTRRTRSWLSGW Trigger: CCAGCCTGACAGCCAGCTCCGAGTCCTCCGTGTTGGGAATGACAACAACTGTTCCCTGGAGTCCCAGGGCTGTAACTCGCCTTTGCCAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000122979.2 ENSMUST00000156530.8 |
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| CDS CAA 72 bp | GGCGAGTTACAGCCCTGGGACTCCAGGGAACAGTTGTaGTCATTCCCAACACGGAGGACTCGGAGCTGGCTG | + |
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Preference number: 6 (lower is better) Translates to: GELQPWDSREQL*SFPTRRTRSWL Trigger: CAGCCAGCTCCGAGTCCTCCGTGTTGGGAATGACAACAACTGTTCCCTGGAGTCCCAGGGCTGTAACTCGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000006303.11 ENSMUST00000111137.8 ENSMUST00000122979.2 ENSMUST00000156530.8 |
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