Pregenerated sensors for UPK3B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042985Ensembl transcript IDs: ENSMUST00000062606.8
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCAACGCCAAGGCAGGTTAGCCCTCTCCTGGTCCACAGGGCCCTCTaGTCTCATCTGGTCCAATTTCAAAAGTTGCTCCACGCACGTTTC | + |
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Preference number: 1 (lower is better) Translates to: PTPRQVSPLLVHRAL*SHLVQFQKLLHARF Trigger: GAAACGTGCGTGGAGCAACTTTTGAAATTGGACCAGATGAGAGCAGAGGGCCCTGTGGACCAGGAGAGGGCTAACCTGCCTTGGCGTTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR CCA 90 bp | GGCAGGTTAGCCCTCTCCTGGTCCACAGGGCCCTCTGCTCTCATCTaGTCCAATTTCAAAAGTTGCTCCACGCACGTTTCTCTGGCCACT | + |
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Preference number: 1 (lower is better) Translates to: GRLALSWSTGPSALI*SNFKSCSTHVSLAT Trigger: AGTGGCCAGAGAAACGTGCGTGGAGCAACTTTTGAAATTGGACCAGATGAGAGCAGAGGGCCCTGTGGACCAGGAGAGGGCTAACCTGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR CCA 90 bp | TACCAGTGGTCAAGGAAACAAGGACGGGTGCTGGGACAAGTTGTGTaGGTGTGGGGGACCGAGTATCTCTTTCCCAACGCCAAGGCAGGT | + |
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Preference number: 1 (lower is better) Translates to: YQWSRKQGRVLGQVV*VWGTEYLFPNAKAG Trigger: ACCTGCCTTGGCGTTGGGAAAGAGATACTCGGTCCCCCACACCCACACAACTTGTCCCAGCACCCGTCCTTGTTTCCTTGACCACTGGTA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR TCA 90 bp | AGAACTCAGAGGCAGAGGTTCACCGACTTGATAAAGATCTGCCACTaGGGCCTGTGCCAGGAGGGAGAGTGGCTGTGGCCGCTTGATTCT | + |
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Preference number: 1 (lower is better) Translates to: RTQRQRFTDLIKICH*GLCQEGEWLWPLDS Trigger: AGAATCAAGCGGCCACAGCCACTCTCCCTCCTGGCACAGGCCTCAGTGGCAGATCTTTATCAAGTCGGTGAACCTCTGCCTCTGAGTTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR GCA 90 bp | TGGTCCACAGGGCCCTCTGCTCTCATCTGGTCCAATTTCAAAAGTTaGTCCACGCACGTTTCTCTGGCCACTGGAGCATTTGGCTGGGTG | + |
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Preference number: 1 (lower is better) Translates to: WSTGPSALIWSNFKS*STHVSLATGAFGWV Trigger: CACCCAGCCAAATGCTCCAGTGGCCAGAGAAACGTGCGTGGAGCAACTTTTGAAATTGGACCAGATGAGAGCAGAGGGCCCTGTGGACCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR CCA 90 bp | GACCGAGTATCTCTTTCCCAACGCCAAGGCAGGTTAGCCCTCTCCTaGTCCACAGGGCCCTCTGCTCTCATCTGGTCCAATTTCAAAAGT | + |
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Preference number: 1 (lower is better) Translates to: DRVSLSQRQGRLALS*STGPSALIWSNFKS Trigger: ACTTTTGAAATTGGACCAGATGAGAGCAGAGGGCCCTGTGGACCAGGAGAGGGCTAACCTGCCTTGGCGTTGGGAAAGAGATACTCGGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR TCA 90 bp | TGGCCTGAACCTCATATAACTCATGATGGGCCCAGCCCAACCTACTaGCTGCCCAACAAGGCTGCCTACCGGGTTGTGTGTTTTTGTTTT | + |
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Preference number: 1 (lower is better) Translates to: WPEPHITHDGPSPTY*LPNKAAYRVVCFCF Trigger: AAAACAAAAACACACAACCCGGTAGGCAGCCTTGTTGGGCAGTCAGTAGGTTGGGCTGGGCCCATCATGAGTTATATGAGGTTCAGGCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR CCA 90 bp | CTCTCATCTGGTCCAATTTCAAAAGTTGCTCCACGCACGTTTCTCTaGCCACTGGAGCATTTGGCTGGGTGCAGCTTCTATCTACACCTC | + |
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Preference number: 1 (lower is better) Translates to: LSSGPISKVAPRTFL*PLEHLAGCSFYLHL Trigger: GAGGTGTAGATAGAAGCTGCACCCAGCCAAATGCTCCAGTGGCCAGAGAAACGTGCGTGGAGCAACTTTTGAAATTGGACCAGATGAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR GCA 90 bp | TCTTTTAACTCAGCAAATACCAGTGGTCAAGGAAACAAGGACGGGTaGTGGGACAAGTTGTGTGGGTGTGGGGGACCGAGTATCTCTTTC | + |
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Preference number: 1 (lower is better) Translates to: SFNSANTSGQGNKDG*WDKLCGCGGPSISF Trigger: GAAAGAGATACTCGGTCCCCCACACCCACACAACTTGTCCCAGCACCCGTCCTTGTTTCCTTGACCACTGGTATTTGCTGAGTTAAAAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR-3UTR TCA 90 bp | GGACAAGTTGTGTGGGTGTGGGGGACCGAGTATCTCTTTCCCAACGCCAAGGCAATAAAGATCTGCCACTaGGGCCTGTGCCAGGAGGGA | + |
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Preference number: 2 (lower is better) Translates to: GQVVWVWGTEYLFPNAKAIKICH*GLCQEG Trigger: TCCCTCCTGGCACAGGCCTCAGTGGCAGATCTTTAT...TGCCTTGGCGTTGGGAAAGAGATACTCGGTCCCCCACACCCACACAACTTGTCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR CAA 90 bp | CTGGTCCACAGGGCCCTCTGCTCTCATCTGGTCCAATTTCAAAAGTaGCTCCACGCACGTTTCTCTGGCCACTGGAGCATTTGGCTGGGT | + |
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Preference number: 2 (lower is better) Translates to: LVHRALCSHLVQFQK*LHARFSGHWSIWLG Trigger: ACCCAGCCAAATGCTCCAGTGGCCAGAGAAACGTGCGTGGAGCAACTTTTGAAATTGGACCAGATGAGAGCAGAGGGCCCTGTGGACCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR-3UTR GCA 90 bp | GCACGTTTCTCTGTTATTCCAAAGCACAAACTGGCGGCAATCAAAGGACCCGTACAGGACCTGCACATCTaGTCTCTGCCCCTCACCCCA | + |
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Preference number: 2 (lower is better) Translates to: ARFSVIPKHKLAAIKGPVQDLHI*SLPLTP Trigger: TGGGGTGAGGGGCAGAGAGCAGATGTGCAGGTCCTG...TACGGGTCCTTTGATTGCCGCCAGTTTGTGCTTTGGAATAACAGAGAAACGTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR-3UTR CCA 90 bp | TCTCCTGGTCCACAGGGCCCTCTGCTCTCATCTGGTCCAATTTCAAAAGTTGCTGATGGAGCAGTAAACTaGAGTGCATGCGCAAGGCCC | + |
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Preference number: 2 (lower is better) Translates to: SPGPQGPLLSSGPISKVADGAVN*SACARP Trigger: GGGCCTTGCGCATGCACTCCAGTTTACTGCTCCATC...AGCAACTTTTGAAATTGGACCAGATGAGAGCAGAGGGCCCTGTGGACCAGGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR-3UTR GCA 90 bp | TGCTCTCATCTGGTCCAATTTCAAAAGTTGCTCCACGCACGTTTCTCTGGCCACAACCATCTCTCTGTGTaGACAGGGGCTGGGCTAGGT | + |
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Preference number: 2 (lower is better) Translates to: CSHLVQFQKLLHARFSGHNHLSV*TGAGLG Trigger: ACCTAGCCCAGCCCCTGTGCACACAGAGAGATGGTT...GTGGCCAGAGAAACGTGCGTGGAGCAACTTTTGAAATTGGACCAGATGAGAGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR-3UTR TCA 90 bp | TTTCAAAAGTTGCTCCACGCACGTTTCTCTGGCCACTGGAGCATTTGGCTGGGTGGAGAGCTTTTCCTTTaGTCGAGTGTACAGTGGGTC | + |
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Preference number: 2 (lower is better) Translates to: FQKLLHARFSGHWSIWLGGELFL*SSVQWV Trigger: GACCCACTGTACACTCGATCAAAGGAAAAGCTCTCC...ACCCAGCCAAATGCTCCAGTGGCCAGAGAAACGTGCGTGGAGCAACTTTTGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR-3UTR CCA 90 bp | GTCCACAGGGCCCTCTGCTCTCATCTGGTCCAATTTCAAAAGTTGCTCCACGCATCTGCAGGCTCAGCCTaGATGAGTCGGAAATACATT | + |
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Preference number: 2 (lower is better) Translates to: VHRALCSHLVQFQKLLHASAGSA*MSRKYI Trigger: AATGTATTTCCGACTCATCCAGGCTGAGCCTGCAGA...TGCGTGGAGCAACTTTTGAAATTGGACCAGATGAGAGCAGAGGGCCCTGTGGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR-3UTR TCA 90 bp | CCTACTGACTGCCCAACAAGGCTGCCTACCGGGTTGTGTGTTTTTGTTTTGTTTTCCTGCTGCGTTCTCTaGAGTCTGGCTAAGGTGAAG | + |
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Preference number: 2 (lower is better) Translates to: PTDCPTRLPTGLCVFVLFSCCVL*SLAKVK Trigger: CTTCACCTTAGCCAGACTTCAGAGAACGCAGCAGGA...AAACAAAACAAAAACACACAACCCGGTAGGCAGCCTTGTTGGGCAGTCAGTAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR-3UTR GCA 90 bp | AAAAGTGAGCACGTTTCTCTGTTATTCCAAAGCACAAACTGGCGGCAATCAAAGTGCACATCTGCTCTCTaGCCCTCACCCCAGGCCCAA | + |
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Preference number: 2 (lower is better) Translates to: KSEHVSLLFQSTNWRQSKCTSAL*PSPQAQ Trigger: TTGGGCCTGGGGTGAGGGGCAGAGAGCAGATGTGCA...CTTTGATTGCCGCCAGTTTGTGCTTTGGAATAACAGAGAAACGTGCTCACTTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR-3UTR CCA 90 bp | AGCCTGGATGAGTCGGAAATACATTCTTCCCTGACCCCTGACAGGACAGGAATGAAGGTGAAGATGAACTaGCCACCTCCTCTAGCCTTA | + |
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Preference number: 2 (lower is better) Translates to: SLDESEIHSSLTPDRTGMKVKMN*PPPLAL Trigger: TAAGGCTAGAGGAGGTGGCCAGTTCATCTTCACCTT...CATTCCTGTCCTGTCAGGGGTCAGGGAAGAATGTATTTCCGACTCATCCAGGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR-3UTR GCA 90 bp | TCCCCAGCAGTAATAGATCCCACATCTGGACAGGTGTCAGTCTGCGATTCAAAGTGGTATTTGTGTAACTaGACCCCACCCCTGGTTGTT | + |
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Preference number: 2 (lower is better) Translates to: SPAVIDPTSGQVSVCDSKWYLCN*TPPLVV Trigger: AACAACCAGGGGTGGGGTGCAGTTACACAAATACCA...CTTTGAATCGCAGACTGACACCTGTCCAGATGTGGGATCTATTACTGCTGGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR-3UTR GCA 90 bp | TGCTCTCATCTGGTCCAATTTCAAAAGTTGCTCCACGCACGTTTCTCTGGCCACCTGACAGGACAGGAATaGAGATGGAGCAGTAAACTG | + |
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Preference number: 2 (lower is better) Translates to: CSHLVQFQKLLHARFSGHLTGQE*RWSSKL Trigger: CAGTTTACTGCTCCATCTGCATTCCTGTCCTGTCAG...GTGGCCAGAGAAACGTGCGTGGAGCAACTTTTGAAATTGGACCAGATGAGAGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR-3UTR TCA 90 bp | GCACGTTTCTCTGTTATTCCAAAGCACAAACTGGCGGCAATCAAAGGACCCGTAAAATACATTCTTCCCTaGCCCCTGACAGGACAGGAA | + |
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Preference number: 2 (lower is better) Translates to: ARFSVIPKHKLAAIKGPVKYILP*PLTGQE Trigger: TTCCTGTCCTGTCAGGGGTCAGGGAAGAATGTATTT...TACGGGTCCTTTGATTGCCGCCAGTTTGTGCTTTGGAATAACAGAGAAACGTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR-3UTR CCA 90 bp | CCTCAGACTGTAAATATGACAACAGTCTTTAACTCCCAGTCCTCCAGTTTCCCCCGAGGGGGACGAAAGTaGTATTTGTGTAACTGCACC | + |
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Preference number: 2 (lower is better) Translates to: PQTVNMTTVFNSQSSSFPRGGRK*YLCNCT Trigger: GGTGCAGTTACACAAATACCACTTTCGTCCCCCTCG...GGGGAAACTGGAGGACTGGGAGTTAAAGACTGTTGTCATATTTACAGTCTGAGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR CAA 90 bp | ACTGACTGCCCAACAAGGCTGCCTACCGGGTTGTGTGTTTTTGTTTaGTTTTGGTTTGTTTCATTTGAGACCTGCTCCTGCCAGATATCC | + |
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Preference number: 2 (lower is better) Translates to: TDCPTRLPTGLCVFV*FWFVSFETCSCQIS Trigger: GGATATCTGGCAGGAGCAGGTCTCAAATGAAACAAACCAAAACAAAACAAAAACACACAACCCGGTAGGCAGCCTTGTTGGGCAGTCAGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR-3UTR TCA 90 bp | CCTCAGACTGTAAATATGACAACAGTCTTTAACTCCCAGTCCTCCAGTTTCCCCTTGGTTTGTTTCATTTaGGACCTGCTCCTGCCAGAT | + |
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Preference number: 2 (lower is better) Translates to: PQTVNMTTVFNSQSSSFPLVCFI*DLLLPD Trigger: ATCTGGCAGGAGCAGGTCTCAAATGAAACAAACCAA...GGGGAAACTGGAGGACTGGGAGTTAAAGACTGTTGTCATATTTACAGTCTGAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR-3UTR GCA 90 bp | AAAAGTGAGCACGTTTCTCTGTTATTCCAAAGCACAAACTGGCGGCAATCAAAGAAAATTTGGTACCTCTaGAGGCTCAGCCTGGATGAG | + |
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Preference number: 2 (lower is better) Translates to: KSEHVSLLFQSTNWRQSKKIWYL*RLSLDE Trigger: CTCATCCAGGCTGAGCCTGCAGAGGTACCAAATTTT...CTTTGATTGCCGCCAGTTTGTGCTTTGGAATAACAGAGAAACGTGCTCACTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR-3UTR TCA 90 bp | CCTCAGACTGTAAATATGACAACAGTCTTTAACTCCCAGTCCTCCAGTTTCCCCCTTGATTCTGAAAAGTaGGCACGTTTCTCTGTTATT | + |
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Preference number: 2 (lower is better) Translates to: PQTVNMTTVFNSQSSSFPLDSEK*ARFSVI Trigger: AATAACAGAGAAACGTGCTCACTTTTCAGAATCAAG...GGGGAAACTGGAGGACTGGGAGTTAAAGACTGTTGTCATATTTACAGTCTGAGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR TCA 72 bp | GCCACGGGGCTACAACTCGCGGGCGCCCCCGCATGGTaGTGGCAGGAACCACTGGCTTTGTCCTGGAGAGCT | + |
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Preference number: 3 (lower is better) Translates to: ATGLQLAGAPAW*WQEPLALSWRA Trigger: AGCTCTCCAGGACAAAGCCAGTGGTTCCTGCCATCACCATGCGGGGGCGCCCGCGAGTTGTAGCCCCGTGGC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR TCA 72 bp | AGGCAGAGGTTCACCGACTTGATAAAGATCTGCCACTaGGGCCTGTGCCAGGAGGGAGAGTGGCTGTGGCCG | + |
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Preference number: 3 (lower is better) Translates to: RQRFTDLIKICH*GLCQEGEWLWP Trigger: CGGCCACAGCCACTCTCCCTCCTGGCACAGGCCTCAGTGGCAGATCTTTATCAAGTCGGTGAACCTCTGCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR CCA 72 bp | TGCACCCCACCCCTGGTTGTTGGGTCAGACGGAAGGTaGCCTGAACCTCATATAACTCATGATGGGCCCAGC | + |
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Preference number: 3 (lower is better) Translates to: CTPPLVVGSDGR*PEPHITHDGPS Trigger: GCTGGGCCCATCATGAGTTATATGAGGTTCAGGCCACCTTCCGTCTGACCCAACAACCAGGGGTGGGGTGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR CCA 72 bp | TCTAGGGGTCACCTGCATGCTGGGGGTTCGGCAAGATaGGGACTAGAACTCAGAGGCAGAGGTTCACCGACT | + |
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Preference number: 3 (lower is better) Translates to: SRGHLHAGGSAR*GLELRGRGSPT Trigger: AGTCGGTGAACCTCTGCCTCTGAGTTCTAGTCCCCATCTTGCCGAACCCCCAGCATGCAGGTGACCCCTAGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR CCA 72 bp | TCCACGCACGTTTCTCTGGCCACTGGAGCATTTGGCTaGGTGCAGCTTCTATCTACACCTCTAGGGGTCACC | + |
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Preference number: 3 (lower is better) Translates to: STHVSLATGAFG*VQLLSTPLGVT Trigger: GGTGACCCCTAGAGGTGTAGATAGAAGCTGCACCCAGCCAAATGCTCCAGTGGCCAGAGAAACGTGCGTGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR CCA 72 bp | TCAAGGAAACAAGGACGGGTGCTGGGACAAGTTGTGTaGGTGTGGGGGACCGAGTATCTCTTTCCCAACGCC | + |
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Preference number: 3 (lower is better) Translates to: SRKQGRVLGQVV*VWGTEYLFPNA Trigger: GGCGTTGGGAAAGAGATACTCGGTCCCCCACACCCACACAACTTGTCCCAGCACCCGTCCTTGTTTCCTTGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR GCA 72 bp | AGTGAGCCGAGAAGTGTGCAGAACCATCTCTCTGTGTaGACAGGGGCTGGGCTAGGTAGCCGACTGTCATTA | + |
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Preference number: 3 (lower is better) Translates to: SEPRSVQNHLSV*TGAGLGSRLSL Trigger: TAATGACAGTCGGCTACCTAGCCCAGCCCCTGTGCACACAGAGAGATGGTTCTGCACACTTCTCGGCTCACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR GCA 72 bp | AGGCAGGTTAGCCCTCTCCTGGTCCACAGGGCCCTCTaGTCTCATCTGGTCCAATTTCAAAAGTTGCTCCAC | + |
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Preference number: 3 (lower is better) Translates to: RQVSPLLVHRAL*SHLVQFQKLLH Trigger: GTGGAGCAACTTTTGAAATTGGACCAGATGAGAGCAGAGGGCCCTGTGGACCAGGAGAGGGCTAACCTGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR CCA 72 bp | GACGAAAGTGGTATTTGTGTAACTGCACCCCACCCCTaGTTGTTGGGTCAGACGGAAGGTGGCCTGAACCTC | + |
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Preference number: 3 (lower is better) Translates to: DESGICVTAPHP*LLGQTEGGLNL Trigger: GAGGTTCAGGCCACCTTCCGTCTGACCCAACAACCAGGGGTGGGGTGCAGTTACACAAATACCACTTTCGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR CCA 72 bp | TTGCTCCACGCACGTTTCTCTGGCCACTGGAGCATTTaGCTGGGTGCAGCTTCTATCTACACCTCTAGGGGT | + |
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Preference number: 3 (lower is better) Translates to: LLHARFSGHWSI*LGAASIYTSRG Trigger: ACCCCTAGAGGTGTAGATAGAAGCTGCACCCAGCCAAATGCTCCAGTGGCCAGAGAAACGTGCGTGGAGCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR CCA 72 bp | GCAAATACCAGTGGTCAAGGAAACAAGGACGGGTGCTaGGACAAGTTGTGTGGGTGTGGGGGACCGAGTATC | + |
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Preference number: 3 (lower is better) Translates to: ANTSGQGNKDGC*DKLCGCGGPSI Trigger: GATACTCGGTCCCCCACACCCACACAACTTGTCCCAGCACCCGTCCTTGTTTCCTTGACCACTGGTATTTGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR TCA 72 bp | GATCGTAGCTTGTGTCAACCGTCCTGCTGCGTTCTCTaGAGTCTGGCTAAGGTGAAGATGAACTGGCCACCT | + |
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Preference number: 3 (lower is better) Translates to: DRSLCQPSCCVL*SLAKVKMNWPP Trigger: AGGTGGCCAGTTCATCTTCACCTTAGCCAGACTTCAGAGAACGCAGCAGGACGGTTGACACAAGCTACGATC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR GCA 72 bp | AAGGAGGTTAAGTTGGCCAAGCTGACCTTGACCACCTaGAAGCATACTTACAGACAGAGCCTAGTGAGGGGC | + |
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Preference number: 3 (lower is better) Translates to: KEVKLAKLTLTT*KHTYRQSLVRG Trigger: GCCCCTCACTAGGCTCTGTCTGTAAGTATGCTTGCAGGTGGTCAAGGTCAGCTTGGCCAACTTAACCTCCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR GCA 72 bp | GGGCCCTCTGCTCTCATCTGGTCCAATTTCAAAAGTTaGTCCACGCACGTTTCTCTGGCCACTGGAGCATTT | + |
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Preference number: 3 (lower is better) Translates to: GPSALIWSNFKS*STHVSLATGAF Trigger: AAATGCTCCAGTGGCCAGAGAAACGTGCGTGGAGCAACTTTTGAAATTGGACCAGATGAGAGCAGAGGGCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR GCA 72 bp | TTTCCATTTTCTTCCCTTTCAGGACTTTGTAGAGATTaGAAAGGCATACTCTCGCCCCCGTGTGGCGGCGGC | + |
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Preference number: 3 (lower is better) Translates to: FPFSSLSGLCRD*KGILSPPCGGG Trigger: GCCGCCGCCACACGGGGGCGAGAGTATGCCTTTGCAATCTCTACAAAGTCCTGAAAGGGAAGAAAATGGAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR-3UTR CAA 90 bp | TCTCCTGGTCCACAGGGCCCTCTGCTCTCATCTGGTCCAATTTCAAAAGTTGCTTTGGCCAAGCTGACCTaGACCACCTGCAAGCATACT | + |
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Preference number: 3 (lower is better) Translates to: SPGPQGPLLSSGPISKVALAKLT*TTCKHT Trigger: AGTATGCTTGCAGGTGGTCAAGGTCAGCTTGGCCAA...AGCAACTTTTGAAATTGGACCAGATGAGAGCAGAGGGCCCTGTGGACCAGGAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR CCA 72 bp | GGTCCAATTTCAAAAGTTGCTCCACGCACGTTTCTCTaGCCACTGGAGCATTTGGCTGGGTGCAGCTTCTAT | + |
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Preference number: 3 (lower is better) Translates to: GPISKVAPRTFL*PLEHLAGCSFY Trigger: ATAGAAGCTGCACCCAGCCAAATGCTCCAGTGGCCAGAGAAACGTGCGTGGAGCAACTTTTGAAATTGGACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR TCA 72 bp | AGGAACCACTGGCTTTGTCCTGGAGAGCTTTTCCTTTaGTCGAGTGTACAGTGGGTCTCAAAGAGCCCACTA | + |
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Preference number: 3 (lower is better) Translates to: RNHWLCPGELFL*SSVQWVSKSPL Trigger: TAGTGGGCTCTTTGAGACCCACTGTACACTCGATCAAAGGAAAAGCTCTCCAGGACAAAGCCAGTGGTTCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR-3UTR CAA 90 bp | TTTCAAAAGTTGCTCCACGCACGTTTCTCTGGCCACTGGAGCATTTGGCTGGGTTTTGGTTTGTTTCATTaGAGACCTGCTCCTGCCAGA | + |
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Preference number: 3 (lower is better) Translates to: FQKLLHARFSGHWSIWLGFGLFH*RPAPAR Trigger: TCTGGCAGGAGCAGGTCTCAAATGAAACAAACCAAA...ACCCAGCCAAATGCTCCAGTGGCCAGAGAAACGTGCGTGGAGCAACTTTTGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR TCA 72 bp | AATTGGGAGAGTGACTCCGAGGATAGTTTGAGAGCATaGCATCTCCCCAGCAGTAATAGATCCCACATCTGG | + |
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Preference number: 3 (lower is better) Translates to: NWESDSEDSLRA*HLPSSNRSHIW Trigger: CCAGATGTGGGATCTATTACTGCTGGGGAGATGTCATGCTCTCAAACTATCCTCGGAGTCACTCTCCCAATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR TCA 72 bp | GAGGGAGAGTGGCTGTGGCCGCTTGATTCTGAAAAGTaGGCACGTTTCTCTGTTATTCCAAAGCACAAACTG | + |
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Preference number: 3 (lower is better) Translates to: EGEWLWPLDSEK*ARFSVIPKHKL Trigger: CAGTTTGTGCTTTGGAATAACAGAGAAACGTGCTCACTTTTCAGAATCAAGCGGCCACAGCCACTCTCCCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR GCA 72 bp | AGGCAAGGGTCGCCGTTAAAGAAAATTTGGTACCTCTaGAGGCTCAGCCTGGATGAGTCGGAAATACATTCT | + |
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Preference number: 3 (lower is better) Translates to: RQGSPLKKIWYL*RLSLDESEIHS Trigger: AGAATGTATTTCCGACTCATCCAGGCTGAGCCTGCAGAGGTACCAAATTTTCTTTAACGGCGACCCTTGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR-3UTR CAA 90 bp | CCTCAGACTGTAAATATGACAACAGTCTTTAACTCCCAGTCCTCCAGTTTCCCCATGAAGGAGGTTAAGTaGGCCAAGCTGACCTTGACC | + |
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Preference number: 3 (lower is better) Translates to: PQTVNMTTVFNSQSSSFPMKEVK*AKLTLT Trigger: GGTCAAGGTCAGCTTGGCCAACTTAACCTCCTTCAT...GGGGAAACTGGAGGACTGGGAGTTAAAGACTGTTGTCATATTTACAGTCTGAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR GCA 72 bp | GCAGTAATAGATCCCACATCTGGACAGGTGTCAGTCTaGGATTCAAAGCAAGGTAGAGTCCTCCAAAGTTAC | + |
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Preference number: 3 (lower is better) Translates to: AVIDPTSGQVSV*DSKQGRVLQSY Trigger: GTAACTTTGGAGGACTCTACCTTGCTTTGAATCGCAGACTGACACCTGTCCAGATGTGGGATCTATTACTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| CDS-3UTR CCA 90 bp | GAGCATGACATCTCCCCAGCAGTAATAGATCCCACATCTGGACAGGTGTCAGTCCGTCTCAGCCTTGGGTaGGCCGGCGGCATCCATTAC | + |
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Preference number: 4 (lower is better) Translates to: EHDISPAVIDPTSGQVSVRLSLG*AGGIHY Trigger: GTAATGGATGCCGCCGGCCCACCCAAGGCTGAGACG...GACTGACACCTGTCCAGATGTGGGATCTATTACTGCTGGGGAGATGTCATGCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR CAA 72 bp | AGTGGTCAAGGAAACAAGGACGGGTGCTGGGACAAGTaGTGTGGGTGTGGGGGACCGAGTATCTCTTTCCCA | + |
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Preference number: 4 (lower is better) Translates to: SGQGNKDGCWDK*CGCGGPSISFP Trigger: TGGGAAAGAGATACTCGGTCCCCCACACCCACACAACTTGTCCCAGCACCCGTCCTTGTTTCCTTGACCACT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| CDS-3UTR CCA 90 bp | ACCCATCCTCAGAAAGAGCGAGGGGGACGAAAGTGGTATTTGTGTAACTGCACCGGTCAGGTCCTCACATaGCAGCTGATCCAGGGACAG | + |
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Preference number: 4 (lower is better) Translates to: THPQKERGGRKWYLCNCTGQVLT*QLIQGQ Trigger: CTGTCCCTGGATCAGCTGCCATGTGAGGACCTGACC...GGTGCAGTTACACAAATACCACTTTCGTCCCCCTCGCTCTTTCTGAGGATGGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| CDS-3UTR CCA 90 bp | GAGAGCTTTTCCTTTGATCGAGTGTACAGTGGGTCTCAAAGAGCCCACTATGGTACTTCGTCTCAGCCTTaGGTGGGCCGGCGGCATCCA | + |
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Preference number: 4 (lower is better) Translates to: ESFSFDRVYSGSQRAHYGTSSQP*VGRRHP Trigger: TGGATGCCGCCGGCCCACCCAAGGCTGAGACGAAGT...ACCATAGTGGGCTCTTTGAGACCCACTGTACACTCGATCAAAGGAAAAGCTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR CAA 72 bp | GAGGCCTGTGCCAGGAGGGAGAGTGGCTGTGGCCGCTaGATTCTGAAAAGTGAGCACGTTTCTCTGTTATTC | + |
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Preference number: 4 (lower is better) Translates to: EACARRESGCGR*ILKSEHVSLLF Trigger: GAATAACAGAGAAACGTGCTCACTTTTCAGAATCAAGCGGCCACAGCCACTCTCCCTCCTGGCACAGGCCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| CDS-3UTR TCA 90 bp | ACCCATCCTCAGAAAGAGCGAGGGGGACGAAAGTGGTATTTGTGTAACTGCACCGCAGTCTGTGGGTTCTaGAAGTCCCTGGAGGCATTG | + |
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Preference number: 4 (lower is better) Translates to: THPQKERGGRKWYLCNCTAVCGF*KSLEAL Trigger: CAATGCCTCCAGGGACTTTCAGAACCCACAGACTGC...GGTGCAGTTACACAAATACCACTTTCGTCCCCCTCGCTCTTTCTGAGGATGGGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR CAA 72 bp | GAAAGTGGTATTTGTGTAACTGCACCCCACCCCTGGTaGTTGGGTCAGACGGAAGGTGGCCTGAACCTCATA | + |
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Preference number: 4 (lower is better) Translates to: ESGICVTAPHPW*LGQTEGGLNLI Trigger: TATGAGGTTCAGGCCACCTTCCGTCTGACCCAACAACCAGGGGTGGGGTGCAGTTACACAAATACCACTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR CAA 72 bp | AGGGCCCTCTGCTCTCATCTGGTCCAATTTCAAAAGTaGCTCCACGCACGTTTCTCTGGCCACTGGAGCATT | + |
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Preference number: 4 (lower is better) Translates to: RALCSHLVQFQK*LHARFSGHWSI Trigger: AATGCTCCAGTGGCCAGAGAAACGTGCGTGGAGCAACTTTTGAAATTGGACCAGATGAGAGCAGAGGGCCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| CDS-3UTR TCA 90 bp | TCTCCTGGTCCACAGGGCCCTCTGCTCTCATCTGGTCCAATTTCAAAAGTTGCTAGAGGATGGAAGTTATaGCGATCATACAGCCGCTCC | + |
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Preference number: 4 (lower is better) Translates to: SPGPQGPLLSSGPISKVARGWKL*RSYSRS Trigger: GGAGCGGCTGTATGATCGTCATAACTTCCATCCTCT...AGCAACTTTTGAAATTGGACCAGATGAGAGCAGAGGGCCCTGTGGACCAGGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| CDS-3UTR GCA 90 bp | GCACGTTTCTCTGTTATTCCAAAGCACAAACTGGCGGCAATCAAAGGACCCGTAACGCGTAGTGGAAGCTaGCAGGAAAGCCAGGAGCAA | + |
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Preference number: 4 (lower is better) Translates to: ARFSVIPKHKLAAIKGPVTRSGS*QESQEQ Trigger: TTGCTCCTGGCTTTCCTGGCAGCTTCCACTACGCGT...TACGGGTCCTTTGATTGCCGCCAGTTTGTGCTTTGGAATAACAGAGAAACGTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| CDS-3UTR CCA 90 bp | TCTCCTGGTCCACAGGGCCCTCTGCTCTCATCTGGTCCAATTTCAAAAGTTGCTCTTAGCAGCAGTCTGTaGGTTCTGAAAGTCCCTGGA | + |
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Preference number: 4 (lower is better) Translates to: SPGPQGPLLSSGPISKVALSSSL*VLKVPG Trigger: TCCAGGGACTTTCAGAACCCACAGACTGCTGCTAAG...AGCAACTTTTGAAATTGGACCAGATGAGAGCAGAGGGCCCTGTGGACCAGGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| CDS-3UTR CCA 90 bp | GTCCACAGGGCCCTCTGCTCTCATCTGGTCCAATTTCAAAAGTTGCTCCACGCACTTGGTGGAGATAAATaGGGTTGGACCACTTCGTCT | + |
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Preference number: 4 (lower is better) Translates to: VHRALCSHLVQFQKLLHALGGDK*GWTTSS Trigger: AGACGAAGTGGTCCAACCCCATTTATCTCCACCAAG...TGCGTGGAGCAACTTTTGAAATTGGACCAGATGAGAGCAGAGGGCCCTGTGGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR CAA 72 bp | CAGGAACCACTGGCTTTGTCCTGGAGAGCTTTTCCTTaGATCGAGTGTACAGTGGGTCTCAAAGAGCCCACT | + |
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Preference number: 4 (lower is better) Translates to: QEPLALSWRAFP*IECTVGLKEPT Trigger: AGTGGGCTCTTTGAGACCCACTGTACACTCGATCAAAGGAAAAGCTCTCCAGGACAAAGCCAGTGGTTCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR CAA 72 bp | CCTTACATGAAGGAGGTTAAGTTGGCCAAGCTGACCTaGACCACCTGCAAGCATACTTACAGACAGAGCCTA | + |
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Preference number: 4 (lower is better) Translates to: PYMKEVKLAKLT*TTCKHTYRQSL Trigger: TAGGCTCTGTCTGTAAGTATGCTTGCAGGTGGTCAAGGTCAGCTTGGCCAACTTAACCTCCTTCATGTAAGG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| 3UTR CAA 72 bp | CCAACAAGGCTGCCTACCGGGTTGTGTGTTTTTGTTTaGTTTTGGTTTGTTTCATTTGAGACCTGCTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: PTRLPTGLCVFV*FWFVSFETCSC Trigger: GCAGGAGCAGGTCTCAAATGAAACAAACCAAAACAAAACAAAAACACACAACCCGGTAGGCAGCCTTGTTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| CDS-3UTR CAA 90 bp | GTAACTGCACCCCACCCCTGGTTGTTGGGTCAGACGGAAGGTGGCCTGAACCTCAAGTCCCTGGAGGCATaGCTGAAAGCCACCACTAGC | + |
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Preference number: 5 (lower is better) Translates to: VTAPHPWLLGQTEGGLNLKSLEA*LKATTS Trigger: GCTAGTGGTGGCTTTCAGCAATGCCTCCAGGGACTT...GAGGTTCAGGCCACCTTCCGTCTGACCCAACAACCAGGGGTGGGGTGCAGTTAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| CDS-3UTR CAA 90 bp | TCTCCTGGTCCACAGGGCCCTCTGCTCTCATCTGGTCCAATTTCAAAAGTTGCTCACTTCGTCTCAGCCTaGGGTGGGCCGGCGGCATCC | + |
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Preference number: 5 (lower is better) Translates to: SPGPQGPLLSSGPISKVAHFVSA*GGPAAS Trigger: GGATGCCGCCGGCCCACCCAAGGCTGAGACGAAGTG...AGCAACTTTTGAAATTGGACCAGATGAGAGCAGAGGGCCCTGTGGACCAGGAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| CDS CCA 90 bp | CGATCATACAGCCGCTCCGTCGGCCAGGCCATGTGTCAATGGAGTTaGGATTCTTTCCTTGGTGGAGATAAATGGGGTTGGACCACTTCG | + |
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Preference number: 5 (lower is better) Translates to: RSYSRSVGQAMCQWS*DSFLGGDKWGWTTS Trigger: CGAAGTGGTCCAACCCCATTTATCTCCACCAAGGAAAGAATCCCAACTCCATTGACACATGGCCTGGCCGACGGAGCGGCTGTATGATCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| CDS CCA 90 bp | TGTCAATGGAGTTGGGATTCTTTCCTTGGTGGAGATAAATGGGGTTaGACCACTTCGTCTCAGCCTTGGGTGGGCCGGCGGCATCCATTA | + |
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Preference number: 5 (lower is better) Translates to: CQWSWDSFLGGDKWG*TTSSQPWVGRRHPL Trigger: TAATGGATGCCGCCGGCCCACCCAAGGCTGAGACGAAGTGGTCCAACCCCATTTATCTCCACCAAGGAAAGAATCCCAACTCCATTGACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| CDS-3UTR CAA 90 bp | GACATCTCCCCAGCAGTAATAGATCCCACATCTGGACAGGTGTCAGTCTGCGATGTTGGGATTCTTTCCTaGGTGGAGATAAATGGGGTT | + |
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Preference number: 5 (lower is better) Translates to: DISPAVIDPTSGQVSVCDVGILS*VEINGV Trigger: AACCCCATTTATCTCCACCAAGGAAAGAATCCCAAC...ATCGCAGACTGACACCTGTCCAGATGTGGGATCTATTACTGCTGGGGAGATGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| CDS CAA 90 bp | GCTCCGTCGGCCAGGCCATGTGTCAATGGAGTTGGGATTCTTTCCTaGGTGGAGATAAATGGGGTTGGACCACTTCGTCTCAGCCTTGGG | + |
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Preference number: 6 (lower is better) Translates to: APSARPCVNGVGILS*VEINGVGPLRLSLG Trigger: CCCAAGGCTGAGACGAAGTGGTCCAACCCCATTTATCTCCACCAAGGAAAGAATCCCAACTCCATTGACACATGGCCTGGCCGACGGAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| CDS TCA 72 bp | GGGAAGGTCGGGATCTTAGCAGCAGTCTGTGGGTTCTaGAAGTCCCTGGAGGCATTGCTGAAAGCCACCACT | + |
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Preference number: 6 (lower is better) Translates to: GKVGILAAVCGF*KSLEALLKATT Trigger: AGTGGTGGCTTTCAGCAATGCCTCCAGGGACTTTCAGAACCCACAGACTGCTGCTAAGATCCCGACCTTCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| CDS CCA 72 bp | CAGCTGTGGGAAGGTCGGGATCTTAGCAGCAGTCTGTaGGTTCTGAAAGTCCCTGGAGGCATTGCTGAAAGC | + |
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Preference number: 6 (lower is better) Translates to: QLWEGRDLSSSL*VLKVPGGIAES Trigger: GCTTTCAGCAATGCCTCCAGGGACTTTCAGAACCCACAGACTGCTGCTAAGATCCCGACCTTCCCACAGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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| CDS CCA 72 bp | TCATACAGCCGCTCCGTCGGCCAGGCCATGTGTCAATaGAGTTGGGATTCTTTCCTTGGTGGAGATAAATGG | + |
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Preference number: 6 (lower is better) Translates to: SYSRSVGQAMCQ*SWDSFLGGDKW Trigger: CCATTTATCTCCACCAAGGAAAGAATCCCAACTCCATTGACACATGGCCTGGCCGACGGAGCGGCTGTATGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062606.8 |
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