RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for UPK3A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022435

Ensembl transcript IDs: ENSMUST00000023070.7

Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGTCATGTTTCACATCTGGTCCAGTCAGAGCATAAACACCATCACTaGCAACCACAGGGCCAAGTTGAAAAGTGGCCATGGCTTGGTGCC +
Preference number: 1 (lower is better)
Translates to: CHVSHLVQSEHKHHH*QPQGQVEKWPWLGA
Trigger: GGCACCAAGCCATGGCCACTTTTCAACTTGGCCCTGTGGTTGGCAGTGATGGTGTTTATGCTCTGACTGGACCAGATGTGAAACATGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
3UTR-3UTR CAA 90 bp CATCTGGTCCAGTCAGAGCATAAACACCATCACTGCCAACCACAGGGCCAAGTTAAAAGTGGCCATGGCTaGGTGCCGGGGCTTGGCTTG +
Preference number: 3 (lower is better)
Translates to: HLVQSEHKHHHCQPQGQVKSGHG*VPGLGL
Trigger: CAAGCCAAGCCCCGGCACCAAGCCATGGCCACTTTT...AACTTGGCCCTGTGGTTGGCAGTGATGGTGTTTATGCTCTGACTGGACCAGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
3UTR GCA 72 bp TCACATCTGGTCCAGTCAGAGCATAAACACCATCACTaGCAACCACAGGGCCAAGTTGAAAAGTGGCCATGG +
Preference number: 3 (lower is better)
Translates to: SHLVQSEHKHHH*QPQGQVEKWPW
Trigger: CCATGGCCACTTTTCAACTTGGCCCTGTGGTTGGCAGTGATGGTGTTTATGCTCTGACTGGACCAGATGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
3UTR CCA 72 bp TTCATGAGGTTGGACCAAGATGTCATGTTTCACATCTaGTCCAGTCAGAGCATAAACACCATCACTGCCAAC +
Preference number: 3 (lower is better)
Translates to: FMRLDQDVMFHI*SSQSINTITAN
Trigger: GTTGGCAGTGATGGTGTTTATGCTCTGACTGGACCAGATGTGAAACATGACATCTTGGTCCAACCTCATGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS-3UTR CCA 90 bp ACTGCCAACCACAGGGCCAAGTTGAAAAGTGGCCATGGCTTGGTGCCGGGGCTTCAACAGCATCCAGGCTaGGCAAGTCACCACAAGGGG +
Preference number: 4 (lower is better)
Translates to: TANHRAKLKSGHGLVPGLQQHPG*ASHHKG
Trigger: CCCCTTGTGGTGACTTGCCCAGCCTGGATGCTGTTG...AAGCCCCGGCACCAAGCCATGGCCACTTTTCAACTTGGCCCTGTGGTTGGCAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS-3UTR CCA 90 bp ATAAACACCATCACTGCCAACCACAGGGCCAAGTTGAAAAGTGGCCATGGCTTGCGGGCCACGTGTCGATaGCCGAGTAGGGGATGGGCC +
Preference number: 4 (lower is better)
Translates to: INTITANHRAKLKSGHGLRATCR*PSRGWA
Trigger: GGCCCATCCCCTACTCGGCCATCGACACGTGGCCCG...CAAGCCATGGCCACTTTTCAACTTGGCCCTGTGGTTGGCAGTGATGGTGTTTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS-3UTR CCA 90 bp TCAGAGCATAAACACCATCACTGCCAACCACAGGGCCAAGTTGAAAAGTGGCCAGGCCGCTGTCAGGGGTaGGTTGCAGAGGCCCTGGAA +
Preference number: 4 (lower is better)
Translates to: SEHKHHHCQPQGQVEKWPGRCQG*VAEALE
Trigger: TTCCAGGGCCTCTGCAACCCACCCCTGACAGCGGCC...TGGCCACTTTTCAACTTGGCCCTGTGGTTGGCAGTGATGGTGTTTATGCTCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS-3UTR CCA 90 bp ACTGCCAACCACAGGGCCAAGTTGAAAAGTGGCCATGGCTTGGTGCCGGGGCTTGCCGGTTGGTCCAGATaGGATCTGACCATAGTGTCT +
Preference number: 4 (lower is better)
Translates to: TANHRAKLKSGHGLVPGLAGWSR*DLTIVS
Trigger: AGACACTATGGTCAGATCCCATCTGGACCAACCGGC...AAGCCCCGGCACCAAGCCATGGCCACTTTTCAACTTGGCCCTGTGGTTGGCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
3UTR CAA 72 bp AGCATAAACACCATCACTGCCAACCACAGGGCCAAGTaGAAAAGTGGCCATGGCTTGGTGCCGGGGCTTGGC +
Preference number: 4 (lower is better)
Translates to: SINTITANHRAK*KSGHGLVPGLG
Trigger: GCCAAGCCCCGGCACCAAGCCATGGCCACTTTTCAACTTGGCCCTGTGGTTGGCAGTGATGGTGTTTATGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS-3UTR CCA 90 bp ACCATCACTGCCAACCACAGGGCCAAGTTGAAAAGTGGCCATGGCTTGGTGCCGTCTGACCATAGTGTCTaGTCCTGCACCAAGCCTGTG +
Preference number: 4 (lower is better)
Translates to: TITANHRAKLKSGHGLVPSDHSV*SCTKPV
Trigger: CACAGGCTTGGTGCAGGACCAGACACTATGGTCAGA...CGGCACCAAGCCATGGCCACTTTTCAACTTGGCCCTGTGGTTGGCAGTGATGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS-3UTR GCA 90 bp CATCTGGTCCAGTCAGAGCATAAACACCATCACTGCCAACCACAGGGCCAAGTTCTCCCACCCTGGGTTTaGCGGAAAGTGGTGCTCAGT +
Preference number: 4 (lower is better)
Translates to: HLVQSEHKHHHCQPQGQVLPPWV*RKVVLS
Trigger: ACTGAGCACCACTTTCCGGCAAACCCAGGGTGGGAG...AACTTGGCCCTGTGGTTGGCAGTGATGGTGTTTATGCTCTGACTGGACCAGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS-3UTR CCA 90 bp ATAAACACCATCACTGCCAACCACAGGGCCAAGTTGAAAAGTGGCCATGGCTTGCTGGCCAGTTGGGGCTaGAGGTTCACAGTCCAGCCA +
Preference number: 4 (lower is better)
Translates to: INTITANHRAKLKSGHGLLASWG*RFTVQP
Trigger: TGGCTGGACTGTGAACCTCCAGCCCCAACTGGCCAG...CAAGCCATGGCCACTTTTCAACTTGGCCCTGTGGTTGGCAGTGATGGTGTTTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS-3UTR CCA 90 bp AGCATAAACACCATCACTGCCAACCACAGGGCCAAGTTGAAAAGTGGCCATGGCTGGCAAAGGTCACACTaGCCAGTTGGGGCTGGAGGT +
Preference number: 4 (lower is better)
Translates to: SINTITANHRAKLKSGHGWQRSH*PVGAGG
Trigger: ACCTCCAGCCCCAACTGGCCAGTGTGACCTTTGCCA...GCCATGGCCACTTTTCAACTTGGCCCTGTGGTTGGCAGTGATGGTGTTTATGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS-3UTR CCA 90 bp CATGTTTCACATCTGGTCCAGTCAGAGCATAAACACCATCACTGCCAACCACAGTGGCCGAGTAGGGGATaGGCCGGTTGGTCCAGATGG +
Preference number: 4 (lower is better)
Translates to: HVSHLVQSEHKHHHCQPQWPSRG*AGWSRW
Trigger: CCATCTGGACCAACCGGCCCATCCCCTACTCGGCCA...CTGTGGTTGGCAGTGATGGTGTTTATGCTCTGACTGGACCAGATGTGAAACATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS-3UTR TCA 90 bp TCAGAGCATAAACACCATCACTGCCAACCACAGGGCCAAGTTGAAAAGTGGCCATGCGTTCAGGATCTCTaGGGCCTGGGTCACATCTCC +
Preference number: 4 (lower is better)
Translates to: SEHKHHHCQPQGQVEKWPCVQDL*GLGHIS
Trigger: GGAGATGTGACCCAGGCCTCAGAGATCCTGAACGCA...TGGCCACTTTTCAACTTGGCCCTGTGGTTGGCAGTGATGGTGTTTATGCTCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS-3UTR TCA 90 bp CTGGTCCAGTCAGAGCATAAACACCATCACTGCCAACCACAGGGCCAAGTTGAAGCCCCGGTTCACAGATaGGTAGGAAGGCTCAGAAGT +
Preference number: 4 (lower is better)
Translates to: LVQSEHKHHHCQPQGQVEAPVHR*VGRLRS
Trigger: ACTTCTGAGCCTTCCTACTCATCTGTGAACCGGGGC...TTCAACTTGGCCCTGTGGTTGGCAGTGATGGTGTTTATGCTCTGACTGGACCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS-3UTR CCA 90 bp ATAAACACCATCACTGCCAACCACAGGGCCAAGTTGAAAAGTGGCCATGGCTTGGTCACACTGGCCAGTTaGGGCTGGAGGTTCACAGTC +
Preference number: 4 (lower is better)
Translates to: INTITANHRAKLKSGHGLVTLAS*GWRFTV
Trigger: GACTGTGAACCTCCAGCCCCAACTGGCCAGTGTGAC...CAAGCCATGGCCACTTTTCAACTTGGCCCTGTGGTTGGCAGTGATGGTGTTTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS-3UTR CCA 90 bp AACACCATCACTGCCAACCACAGGGCCAAGTTGAAAAGTGGCCATGGCTTGGTGGTACAGACACATTCCTaGACATGGCTGAGTCGACCA +
Preference number: 4 (lower is better)
Translates to: NTITANHRAKLKSGHGLVVQTHS*TWLSRP
Trigger: TGGTCGACTCAGCCATGTCCAGGAATGTGTCTGTAC...CACCAAGCCATGGCCACTTTTCAACTTGGCCCTGTGGTTGGCAGTGATGGTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS-3UTR CCA 90 bp TTTCACATCTGGTCCAGTCAGAGCATAAACACCATCACTGCCAACCACAGGGCCAGGATCTCTGAGGCCTaGGTCACATCTCCAACAGCA +
Preference number: 4 (lower is better)
Translates to: FHIWSSQSINTITANHRARISEA*VTSPTA
Trigger: TGCTGTTGGAGATGTGACCCAGGCCTCAGAGATCCT...GGCCCTGTGGTTGGCAGTGATGGTGTTTATGCTCTGACTGGACCAGATGTGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS-3UTR GCA 90 bp AACACCATCACTGCCAACCACAGGGCCAAGTTGAAAAGTGGCCATGGCTTGGTGCTGAGCTATCAAACATaGACAGAGGCTTCTCCAAGG +
Preference number: 4 (lower is better)
Translates to: NTITANHRAKLKSGHGLVLSYQT*TEASPR
Trigger: CCTTGGAGAAGCCTCTGTGCATGTTTGATAGCTCAG...CACCAAGCCATGGCCACTTTTCAACTTGGCCCTGTGGTTGGCAGTGATGGTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS-3UTR CCA 90 bp CATGTTTCACATCTGGTCCAGTCAGAGCATAAACACCATCACTGCCAACCACAGTTGGGAACAGCCTCCTaGGTGATCTGTGAGTCGTGT +
Preference number: 4 (lower is better)
Translates to: HVSHLVQSEHKHHHCQPQLGTAS*VICESC
Trigger: ACACGACTCACAGATCACCCAGGAGGCTGTTCCCAA...CTGTGGTTGGCAGTGATGGTGTTTATGCTCTGACTGGACCAGATGTGAAACATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS-3UTR TCA 90 bp TTTCATGAGGTTGGACCAAGATGTCATGTTTCACATCTGGTCCAGTCAGAGCATGAACAGCCTCCTGGGTaGTCTGTGAGTCGTGTGTCA +
Preference number: 4 (lower is better)
Translates to: FHEVGPRCHVSHLVQSEHEQPPG*SVSRVS
Trigger: TGACACACGACTCACAGATCACCCAGGAGGCTGTTC...ATGCTCTGACTGGACCAGATGTGAAACATGACATCTTGGTCCAACCTCATGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS-3UTR CCA 90 bp TTTTTCATGAGGTTGGACCAAGATGTCATGTTTCACATCTGGTCCAGTCAGAGCGGGTTGCAGAGGCCCTaGAAGTTGGGGTCCCAAAAA +
Preference number: 4 (lower is better)
Translates to: FFMRLDQDVMFHIWSSQSGLQRP*KLGSQK
Trigger: TTTTTGGGACCCCAACTTCCAGGGCCTCTGCAACCC...GCTCTGACTGGACCAGATGTGAAACATGACATCTTGGTCCAACCTCATGAAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS-3UTR GCA 90 bp TTATTTAGCTTTTTCATGAGGTTGGACCAAGATGTCATGTTTCACATCTGGTCCTTTGCCGGAAAGTGGTaGTCAGTGGGACGCCAGCGC +
Preference number: 4 (lower is better)
Translates to: LFSFFMRLDQDVMFHIWSFAGKW*SVGRQR
Trigger: GCGCTGGCGTCCCACTGAGCACCACTTTCCGGCAAA...GGACCAGATGTGAAACATGACATCTTGGTCCAACCTCATGAAAAAGCTAAATAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS-3UTR CCA 90 bp TTATTTAGCTTTTTCATGAGGTTGGACCAAGATGTCATGTTTCACATCTGGTCCAGAGGCCCTGGAAGTTaGGGTCCCAAAAACAGGTCC +
Preference number: 4 (lower is better)
Translates to: LFSFFMRLDQDVMFHIWSRGPGS*GPKNRS
Trigger: GGACCTGTTTTTGGGACCCCAACTTCCAGGGCCTCT...GGACCAGATGTGAAACATGACATCTTGGTCCAACCTCATGAAAAAGCTAAATAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS CCA 90 bp GCCGGCCGGGCCACGTGTCGATGGCCGAGTAGGGGATGGGCCGGTTaGTCCAGATGGGATCTGACCATAGTGTCTGGTCCTGCACCAAGC +
Preference number: 5 (lower is better)
Translates to: AGRATCRWPSRGWAG*SRWDLTIVSGPAPS
Trigger: GCTTGGTGCAGGACCAGACACTATGGTCAGATCCCATCTGGACCAACCGGCCCATCCCCTACTCGGCCATCGACACGTGGCCCGGCCGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS CCA 90 bp CTCCACTCCGCCGGCCGGGCCACGTGTCGATGGCCGAGTAGGGGATaGGCCGGTTGGTCCAGATGGGATCTGACCATAGTGTCTGGTCCT +
Preference number: 5 (lower is better)
Translates to: LHSAGRATCRWPSRG*AGWSRWDLTIVSGP
Trigger: AGGACCAGACACTATGGTCAGATCCCATCTGGACCAACCGGCCCATCCCCTACTCGGCCATCGACACGTGGCCCGGCCGGCGGAGTGGAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS CCA 90 bp AGGGTAGGGTTGTTGGTGGCAAAGGTCACACTGGCCAGTTGGGGCTaGAGGTTCACAGTCCAGCCACACCGCAGGCATCCGAGAGCCAGC +
Preference number: 5 (lower is better)
Translates to: RVGLLVAKVTLASWG*RFTVQPHRRHPRAS
Trigger: GCTGGCTCTCGGATGCCTGCGGTGTGGCTGGACTGTGAACCTCCAGCCCCAACTGGCCAGTGTGACCTTTGCCACCAACAACCCTACCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS TCA 90 bp GTCACCACAAGGGGTCAGGTCAAAGGCCGCAGCTTTATAGGGGCCTaGCCTCCCACCCTGGGTTTGCCGGAAAGTGGTGCTCAGTGGGAC +
Preference number: 5 (lower is better)
Translates to: VTTRGQVKGRSFIGA*PPTLGLPESGAQWD
Trigger: GTCCCACTGAGCACCACTTTCCGGCAAACCCAGGGTGGGAGGTCAGGCCCCTATAAAGCTGCGGCCTTTGACCTGACCCCTTGTGGTGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS CCA 90 bp GTGGTGAGGGTAGGGTTGTTGGTGGCAAAGGTCACACTGGCCAGTTaGGGCTGGAGGTTCACAGTCCAGCCACACCGCAGGCATCCGAGA +
Preference number: 5 (lower is better)
Translates to: VVRVGLLVAKVTLAS*GWRFTVQPHRRHPR
Trigger: TCTCGGATGCCTGCGGTGTGGCTGGACTGTGAACCTCCAGCCCCAACTGGCCAGTGTGACCTTTGCCACCAACAACCCTACCCTCACCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS GCA 90 bp CTTTATAGGGGCCTGACCTCCCACCCTGGGTTTGCCGGAAAGTGGTaGTCAGTGGGACGCCAGCGCTGTCCTGTACAGACACATTCCTGG +
Preference number: 5 (lower is better)
Translates to: LYRGLTSHPGFAGKW*SVGRQRCPVQTHSW
Trigger: CCAGGAATGTGTCTGTACAGGACAGCGCTGGCGTCCCACTGAGCACCACTTTCCGGCAAACCCAGGGTGGGAGGTCAGGCCCCTATAAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS CCA 90 bp CAGCTTTATAGGGGCCTGACCTCCCACCCTGGGTTTGCCGGAAAGTaGTGCTCAGTGGGACGCCAGCGCTGTCCTGTACAGACACATTCC +
Preference number: 5 (lower is better)
Translates to: QLYRGLTSHPGFAGK*CSVGRQRCPVQTHS
Trigger: GGAATGTGTCTGTACAGGACAGCGCTGGCGTCCCACTGAGCACCACTTTCCGGCAAACCCAGGGTGGGAGGTCAGGCCCCTATAAAGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS-3UTR CAA 90 bp ATCACTGCCAACCACAGGGCCAAGTTGAAAAGTGGCCATGGCTTGGTGCCGGGGGTGGTGAGGGTAGGGTaGTTGGTGGCAAAGGTCACA +
Preference number: 5 (lower is better)
Translates to: ITANHRAKLKSGHGLVPGVVRVG*LVAKVT
Trigger: TGTGACCTTTGCCACCAACAACCCTACCCTCACCAC...CCCCGGCACCAAGCCATGGCCACTTTTCAACTTGGCCCTGTGGTTGGCAGTGAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS TCA 90 bp CCTGGAAGTTGGGGTCCCAAAAACAGGTCCCGTTGTTGCCCACCCTaGCTAGGTATGCGTTCAGGATCTCTGAGGCCTGGGTCACATCTC +
Preference number: 5 (lower is better)
Translates to: PGSWGPKNRSRCCPP*LGMRSGSLRPGSHL
Trigger: GAGATGTGACCCAGGCCTCAGAGATCCTGAACGCATACCTAGTCAGGGTGGGCAACAACGGGACCTGTTTTTGGGACCCCAACTTCCAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS-3UTR CAA 90 bp CTGGTCCAGTCAGAGCATAAACACCATCACTGCCAACCACAGGGCCAAGTTGAAGAAGTCCCCAGGGTCTaGGGAACAGCCTCCTGGGTG +
Preference number: 5 (lower is better)
Translates to: LVQSEHKHHHCQPQGQVEEVPRV*GTASWV
Trigger: CACCCAGGAGGCTGTTCCCAAGACCCTGGGGACTTC...TTCAACTTGGCCCTGTGGTTGGCAGTGATGGTGTTTATGCTCTGACTGGACCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS-3UTR CAA 90 bp TCAGAGCATAAACACCATCACTGCCAACCACAGGGCCAAGTTGAAAAGTGGCCAGGTCACACTGGCCAGTaGGGGCTGGAGGTTCACAGT +
Preference number: 5 (lower is better)
Translates to: SEHKHHHCQPQGQVEKWPGHTGQ*GLEVHS
Trigger: ACTGTGAACCTCCAGCCCCAACTGGCCAGTGTGACC...TGGCCACTTTTCAACTTGGCCCTGTGGTTGGCAGTGATGGTGTTTATGCTCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS-3UTR CAA 90 bp CATGTTTCACATCTGGTCCAGTCAGAGCATAAACACCATCACTGCCAACCACAGCCTCCCACCCTGGGTTaGCCGGAAAGTGGTGCTCAG +
Preference number: 5 (lower is better)
Translates to: HVSHLVQSEHKHHHCQPQPPTLG*PESGAQ
Trigger: CTGAGCACCACTTTCCGGCAAACCCAGGGTGGGAGG...CTGTGGTTGGCAGTGATGGTGTTTATGCTCTGACTGGACCAGATGTGAAACATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS TCA 90 bp GACCATAGCATAGAGGTAAACCTCGTAAGAGCCGCTGAGTGGCTCTaGGCTATCAAACATGCACAGAGGCTTCTCCAAGGCCACGGTGGT +
Preference number: 5 (lower is better)
Translates to: DHSIEVNLVRAAEWL*AIKHAQRLLQGHGG
Trigger: ACCACCGTGGCCTTGGAGAAGCCTCTGTGCATGTTTGATAGCTCAGAGCCACTCAGCGGCTCTTACGAGGTTTACCTCTATGCTATGGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS GCA 90 bp ATGGGCCGGTTGGTCCAGATGGGATCTGACCATAGTGTCTGGTCCTaGACCAAGCCTGTGGACATGTTGACCAGGACATACTTGAATCTG +
Preference number: 5 (lower is better)
Translates to: MGRLVQMGSDHSVWS*TKPVDMLTRTYLNL
Trigger: CAGATTCAAGTATGTCCTGGTCAACATGTCCACAGGCTTGGTGCAGGACCAGACACTATGGTCAGATCCCATCTGGACCAACCGGCCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS-3UTR CAA 90 bp CATCTGGTCCAGTCAGAGCATAAACACCATCACTGCCAACCACAGGGCCAAGTTCAAAAACAGGTCCCGTaGTTGCCCACCCTGACTAGG +
Preference number: 5 (lower is better)
Translates to: HLVQSEHKHHHCQPQGQVQKQVP*LPTLTR
Trigger: CCTAGTCAGGGTGGGCAACAACGGGACCTGTTTTTG...AACTTGGCCCTGTGGTTGGCAGTGATGGTGTTTATGCTCTGACTGGACCAGATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS-3UTR CAA 90 bp CATAAACACCATCACTGCCAACCACAGGGCCAAGTTGAAAAGTGGCCATGGCTTCAGAGGCCCTGGAAGTaGGGGTCCCAAAAACAGGTC +
Preference number: 5 (lower is better)
Translates to: HKHHHCQPQGQVEKWPWLQRPWK*GSQKQV
Trigger: GACCTGTTTTTGGGACCCCAACTTCCAGGGCCTCTG...AAGCCATGGCCACTTTTCAACTTGGCCCTGTGGTTGGCAGTGATGGTGTTTATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS-3UTR CAA 90 bp CATCTGGTCCAGTCAGAGCATAAACACCATCACTGCCAACCACAGGGCCAAGTTAAACAGGTCCCGTTGTaGCCCACCCTGACTAGGTAT +
Preference number: 5 (lower is better)
Translates to: HLVQSEHKHHHCQPQGQVKQVPL*PTLTRY
Trigger: ATACCTAGTCAGGGTGGGCAACAACGGGACCTGTTT...AACTTGGCCCTGTGGTTGGCAGTGATGGTGTTTATGCTCTGACTGGACCAGATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS-3UTR CAA 90 bp TCCAGTCAGAGCATAAACACCATCACTGCCAACCACAGGGCCAAGTTGAAAAGTTTGACCAGGACATACTaGAATCTGTACTCAGTGGCC +
Preference number: 5 (lower is better)
Translates to: SSQSINTITANHRAKLKSLTRTY*NLYSVA
Trigger: GGCCACTGAGTACAGATTCAAGTATGTCCTGGTCAA...ACTTTTCAACTTGGCCCTGTGGTTGGCAGTGATGGTGTTTATGCTCTGACTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS-3UTR CAA 90 bp CATGTTTCACATCTGGTCCAGTCAGAGCATAAACACCATCACTGCCAACCACAGAAGCCTGTGGACATGTaGACCAGGACATACTTGAAT +
Preference number: 5 (lower is better)
Translates to: HVSHLVQSEHKHHHCQPQKPVDM*TRTYLN
Trigger: ATTCAAGTATGTCCTGGTCAACATGTCCACAGGCTT...CTGTGGTTGGCAGTGATGGTGTTTATGCTCTGACTGGACCAGATGTGAAACATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS CCA 72 bp TCATGCCTCCACTCCGCCGGCCGGGCCACGTGTCGATaGCCGAGTAGGGGATGGGCCGGTTGGTCCAGATGG +
Preference number: 6 (lower is better)
Translates to: SCLHSAGRATCR*PSRGWAGWSRW
Trigger: CCATCTGGACCAACCGGCCCATCCCCTACTCGGCCATCGACACGTGGCCCGGCCGGCGGAGTGGAGGCATGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS CCA 72 bp GCCGGCCGGGCCACGTGTCGATGGCCGAGTAGGGGATaGGCCGGTTGGTCCAGATGGGATCTGACCATAGTG +
Preference number: 6 (lower is better)
Translates to: AGRATCRWPSRG*AGWSRWDLTIV
Trigger: CACTATGGTCAGATCCCATCTGGACCAACCGGCCCATCCCCTACTCGGCCATCGACACGTGGCCCGGCCGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS CCA 72 bp AGGGGCCTGACCTCCCACCCTGGGTTTGCCGGAAAGTaGTGCTCAGTGGGACGCCAGCGCTGTCCTGTACAG +
Preference number: 6 (lower is better)
Translates to: RGLTSHPGFAGK*CSVGRQRCPVQ
Trigger: CTGTACAGGACAGCGCTGGCGTCCCACTGAGCACCACTTTCCGGCAAACCCAGGGTGGGAGGTCAGGCCCCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS GCA 72 bp GGCCTGACCTCCCACCCTGGGTTTGCCGGAAAGTGGTaGTCAGTGGGACGCCAGCGCTGTCCTGTACAGACA +
Preference number: 6 (lower is better)
Translates to: GLTSHPGFAGKW*SVGRQRCPVQT
Trigger: TGTCTGTACAGGACAGCGCTGGCGTCCCACTGAGCACCACTTTCCGGCAAACCCAGGGTGGGAGGTCAGGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS CCA 72 bp CCGCTGTCAGGGGTGGGTTGCAGAGGCCCTGGAAGTTaGGGTCCCAAAAACAGGTCCCGTTGTTGCCCACCC +
Preference number: 6 (lower is better)
Translates to: PLSGVGCRGPGS*GPKNRSRCCPP
Trigger: GGGTGGGCAACAACGGGACCTGTTTTTGGGACCCCAACTTCCAGGGCCTCTGCAACCCACCCCTGACAGCGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS CAA 90 bp GGTGGTGAGGGTAGGGTTGTTGGTGGCAAAGGTCACACTGGCCAGTaGGGGCTGGAGGTTCACAGTCCAGCCACACCGCAGGCATCCGAG +
Preference number: 6 (lower is better)
Translates to: GGEGRVVGGKGHTGQ*GLEVHSPATPQASE
Trigger: CTCGGATGCCTGCGGTGTGGCTGGACTGTGAACCTCCAGCCCCAACTGGCCAGTGTGACCTTTGCCACCAACAACCCTACCCTCACCACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS CCA 72 bp TTGTTGGTGGCAAAGGTCACACTGGCCAGTTGGGGCTaGAGGTTCACAGTCCAGCCACACCGCAGGCATCCG +
Preference number: 6 (lower is better)
Translates to: LLVAKVTLASWG*RFTVQPHRRHP
Trigger: CGGATGCCTGCGGTGTGGCTGGACTGTGAACCTCCAGCCCCAACTGGCCAGTGTGACCTTTGCCACCAACAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS CCA 72 bp CCTCCCACCCTGGGTTTGCCGGAAAGTGGTGCTCAGTaGGACGCCAGCGCTGTCCTGTACAGACACATTCCT +
Preference number: 6 (lower is better)
Translates to: PPTLGLPESGAQ*DASAVLYRHIP
Trigger: AGGAATGTGTCTGTACAGGACAGCGCTGGCGTCCCACTGAGCACCACTTTCCGGCAAACCCAGGGTGGGAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS CAA 72 bp GGTAGGGTTGTTGGTGGCAAAGGTCACACTGGCCAGTaGGGGCTGGAGGTTCACAGTCCAGCCACACCGCAG +
Preference number: 6 (lower is better)
Translates to: GRVVGGKGHTGQ*GLEVHSPATPQ
Trigger: CTGCGGTGTGGCTGGACTGTGAACCTCCAGCCCCAACTGGCCAGTGTGACCTTTGCCACCAACAACCCTACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS CAA 72 bp AGAGGCTTCTCCAAGGCCACGGTGGTGAGGGTAGGGTaGTTGGTGGCAAAGGTCACACTGGCCAGTTGGGGC +
Preference number: 6 (lower is better)
Translates to: RGFSKATVVRVG*LVAKVTLASWG
Trigger: GCCCCAACTGGCCAGTGTGACCTTTGCCACCAACAACCCTACCCTCACCACCGTGGCCTTGGAGAAGCCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS CAA 90 bp ATGCACAGAGGCTTCTCCAAGGCCACGGTGGTGAGGGTAGGGTTGTaGGTGGCAAAGGTCACACTGGCCAGTTGGGGCTGGAGGTTCACA +
Preference number: 6 (lower is better)
Translates to: MHRGFSKATVVRVGL*VAKVTLASWGWRFT
Trigger: TGTGAACCTCCAGCCCCAACTGGCCAGTGTGACCTTTGCCACCAACAACCCTACCCTCACCACCGTGGCCTTGGAGAAGCCTCTGTGCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS CAA 90 bp AACATGCACAGAGGCTTCTCCAAGGCCACGGTGGTGAGGGTAGGGTaGTTGGTGGCAAAGGTCACACTGGCCAGTTGGGGCTGGAGGTTC +
Preference number: 6 (lower is better)
Translates to: NMHRGFSKATVVRVG*LVAKVTLASWGWRF
Trigger: GAACCTCCAGCCCCAACTGGCCAGTGTGACCTTTGCCACCAACAACCCTACCCTCACCACCGTGGCCTTGGAGAAGCCTCTGTGCATGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS CCA 72 bp GGCCGGTTGGTCCAGATGGGATCTGACCATAGTGTCTaGTCCTGCACCAAGCCTGTGGACATGTTGACCAGG +
Preference number: 6 (lower is better)
Translates to: GRLVQMGSDHSV*SCTKPVDMLTR
Trigger: CCTGGTCAACATGTCCACAGGCTTGGTGCAGGACCAGACACTATGGTCAGATCCCATCTGGACCAACCGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS CAA 90 bp GTCTGGTCCTGCACCAAGCCTGTGGACATGTTGACCAGGACATACTaGAATCTGTACTCAGTGGCCGCTGTCAGGGGTGGGTTGCAGAGG +
Preference number: 6 (lower is better)
Translates to: VWSCTKPVDMLTRTY*NLYSVAAVRGGLQR
Trigger: CCTCTGCAACCCACCCCTGACAGCGGCCACTGAGTACAGATTCAAGTATGTCCTGGTCAACATGTCCACAGGCTTGGTGCAGGACCAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS CCA 72 bp GGCTCAGAAGTCCCCAGGGTCTTGGGAACAGCCTCCTaGGTGATCTGTGAGTCGTGTGTCATTTCCCCATCA +
Preference number: 6 (lower is better)
Translates to: GSEVPRVLGTAS*VICESCVISPS
Trigger: TGATGGGGAAATGACACACGACTCACAGATCACCCAGGAGGCTGTTCCCAAGACCCTGGGGACTTCTGAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS CAA 72 bp CCCTGGAAGTTGGGGTCCCAAAAACAGGTCCCGTTGTaGCCCACCCTGACTAGGTATGCGTTCAGGATCTCT +
Preference number: 6 (lower is better)
Translates to: PWKLGSQKQVPL*PTLTRYAFRIS
Trigger: AGAGATCCTGAACGCATACCTAGTCAGGGTGGGCAACAACGGGACCTGTTTTTGGGACCCCAACTTCCAGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS CAA 72 bp TGCACCAAGCCTGTGGACATGTTGACCAGGACATACTaGAATCTGTACTCAGTGGCCGCTGTCAGGGGTGGG +
Preference number: 6 (lower is better)
Translates to: CTKPVDMLTRTY*NLYSVAAVRGG
Trigger: CCCACCCCTGACAGCGGCCACTGAGTACAGATTCAAGTATGTCCTGGTCAACATGTCCACAGGCTTGGTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS CAA 90 bp GGATCTGACCATAGTGTCTGGTCCTGCACCAAGCCTGTGGACATGTaGACCAGGACATACTTGAATCTGTACTCAGTGGCCGCTGTCAGG +
Preference number: 6 (lower is better)
Translates to: GSDHSVWSCTKPVDM*TRTYLNLYSVAAVR
Trigger: CCTGACAGCGGCCACTGAGTACAGATTCAAGTATGTCCTGGTCAACATGTCCACAGGCTTGGTGCAGGACCAGACACTATGGTCAGATCC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS GCA 72 bp TTGGTCCAGATGGGATCTGACCATAGTGTCTGGTCCTaGACCAAGCCTGTGGACATGTTGACCAGGACATAC +
Preference number: 6 (lower is better)
Translates to: LVQMGSDHSVWS*TKPVDMLTRTY
Trigger: GTATGTCCTGGTCAACATGTCCACAGGCTTGGTGCAGGACCAGACACTATGGTCAGATCCCATCTGGACCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS TCA 72 bp ATAGAGGTAAACCTCGTAAGAGCCGCTGAGTGGCTCTaGGCTATCAAACATGCACAGAGGCTTCTCCAAGGC +
Preference number: 6 (lower is better)
Translates to: IEVNLVRAAEWL*AIKHAQRLLQG
Trigger: GCCTTGGAGAAGCCTCTGTGCATGTTTGATAGCTCAGAGCCACTCAGCGGCTCTTACGAGGTTTACCTCTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7
CDS CAA 72 bp CATAGTGTCTGGTCCTGCACCAAGCCTGTGGACATGTaGACCAGGACATACTTGAATCTGTACTCAGTGGCC +
Preference number: 6 (lower is better)
Translates to: HSVWSCTKPVDM*TRTYLNLYSVA
Trigger: GGCCACTGAGTACAGATTCAAGTATGTCCTGGTCAACATGTCCACAGGCTTGGTGCAGGACCAGACACTATG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023070.7