Pregenerated sensors for UPK2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041523Ensembl transcript IDs: ENSMUST00000047740.4
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CGGGGAGAGGGAAGAAAAGCCACTGAGAAGCCAGTGACTACAGCCTaGCAGGAGGCAGGCTGGACTTCTTGGAGGAGCCTGGGATGCAGG | + |
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Preference number: 1 (lower is better) Translates to: RGEGRKATEKPVTTA*QEAGWTSWRSLGCR Trigger: CCTGCATCCCAGGCTCCTCCAAGAAGTCCAGCCTGCCTCCTGCCAGGCTGTAGTCACTGGCTTCTCAGTGGCTTTTCTTCCCTCTCCCCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047740.4 |
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| 3UTR-3UTR CCA 90 bp | CAGGATTGCAGTGGGGCTAGCAGGGAGTGCTGCAAGGTGAGACAGGGAGCAGGGGGGCACTGTCAGGAGTaGACTCGAGGAGGGGGCGGG | + |
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Preference number: 2 (lower is better) Translates to: QDCSGASRECCKVRQGAGGHCQE*TRGGGG Trigger: CCCGCCCCCTCCTCGAGTCCACTCCTGACAGTGCCC...CCCTGCTCCCTGTCTCACCTTGCAGCACTCCCTGCTAGCCCCACTGCAATCCTG 66% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000047740.4 |
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| 3UTR-3UTR CCA 90 bp | TGGCAGGATTGCAGTGGGGCTAGCAGGGAGTGCTGCAAGGTGAGACAGGGAGCACCAGTGACTACAGCCTaGCAGGAGGCAGGCTGGACT | + |
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Preference number: 2 (lower is better) Translates to: WQDCSGASRECCKVRQGAPVTTA*QEAGWT Trigger: AGTCCAGCCTGCCTCCTGCCAGGCTGTAGTCACTGG...TGCTCCCTGTCTCACCTTGCAGCACTCCCTGCTAGCCCCACTGCAATCCTGCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047740.4 |
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| 3UTR-3UTR CAA 90 bp | GACAGGGAGCAGGGAGGGGGCACTGTCAGGAGTGGACTCGAGGAGGGGGCGGGGGGCAGGCTGGACTTCTaGGAGGAGCCTGGGATGCAG | + |
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Preference number: 3 (lower is better) Translates to: DREQGGGTVRSGLEEGAGGRLDF*EEPGMQ Trigger: CTGCATCCCAGGCTCCTCCAAGAAGTCCAGCCTGCC...CCCCGCCCCCTCCTCGAGTCCACTCCTGACAGTGCCCCCTCCCTGCTCCCTGTC 69% GC, longest homopolymer 6 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000047740.4 |
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| 3UTR TCA 72 bp | GGCGGGGAGAGGGAAGAAAAGCCACTGAGAAGCCAGTaGCTACAGCCTGGCAGGAGGCAGGCTGGACTTCTT | + |
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Preference number: 3 (lower is better) Translates to: GGEREEKPLRSQ*LQPGRRQAGLL Trigger: AAGAAGTCCAGCCTGCCTCCTGCCAGGCTGTAGTCACTGGCTTCTCAGTGGCTTTTCTTCCCTCTCCCCGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047740.4 |
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| 3UTR CCA 72 bp | GGAAGAAAAGCCACTGAGAAGCCAGTGACTACAGCCTaGCAGGAGGCAGGCTGGACTTCTTGGAGGAGCCTG | + |
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Preference number: 3 (lower is better) Translates to: GRKATEKPVTTA*QEAGWTSWRSL Trigger: CAGGCTCCTCCAAGAAGTCCAGCCTGCCTCCTGCCAGGCTGTAGTCACTGGCTTCTCAGTGGCTTTTCTTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047740.4 |
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| CDS-3UTR CCA 90 bp | GACAGGGAGCAGGGAGGGGGCACTGTCAGGAGTGGACTCGAGGAGGGGGCGGGGCCACTTTGCTGTCGTTaGCTCTCCGGACCATCAATG | + |
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Preference number: 4 (lower is better) Translates to: DREQGGGTVRSGLEEGAGPLCCR*LSGPSM Trigger: CATTGATGGTCCGGAGAGCCAACGACAGCAAAGTGG...CCCCGCCCCCTCCTCGAGTCCACTCCTGACAGTGCCCCCTCCCTGCTCCCTGTC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000047740.4 |
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| CDS-3UTR GCA 90 bp | GGGCGGGGAGAGGGAAGAAAAGCCACTGAGAAGCCAGTGACTACAGCCTGGCAGCGCTCACAAGCTCCCTaGGCCCGCGACATGGAGGCA | + |
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Preference number: 4 (lower is better) Translates to: GRGEGRKATEKPVTTAWQRSQAP*ARDMEA Trigger: TGCCTCCATGTCGCGGGCGCAGGGAGCTTGTGAGCG...CTGCCAGGCTGTAGTCACTGGCTTCTCAGTGGCTTTTCTTCCCTCTCCCCGCCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047740.4 |
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| CDS-3UTR GCA 90 bp | GACAGGGAGCAGGGAGGGGGCACTGTCAGGAGTGGACTCGAGGAGGGGGCGGGGGTTTGTCACCTGATATaGGCTGAGCCTTGTGACGGT | + |
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Preference number: 4 (lower is better) Translates to: DREQGGGTVRSGLEEGAGVCHLI*AEPCDG Trigger: ACCGTCACAAGGCTCAGCGCATATCAGGTGACAAAC...CCCCGCCCCCTCCTCGAGTCCACTCCTGACAGTGCCCCCTCCCTGCTCCCTGTC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000047740.4 |
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| CDS-3UTR CCA 90 bp | GCCTGGCAGGAGGCAGGCTGGACTTCTTGGAGGAGCCTGGGATGCAGGAGAGCCCTGGACTGGACTCGGTaGATGTCCCCTTCTGTACTC | + |
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Preference number: 4 (lower is better) Translates to: AWQEAGWTSWRSLGCRRALDWTR*MSPSVL Trigger: GAGTACAGAAGGGGACATCCACCGAGTCCAGTCCAG...GGCTCTCCTGCATCCCAGGCTCCTCCAAGAAGTCCAGCCTGCCTCCTGCCAGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047740.4 |
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| CDS-3UTR TCA 90 bp | GAGGGAAGAAAAGCCACTGAGAAGCCAGTGACTACAGCCTGGCAGGAGGCAGGCAGAGGCTTGAGATGTTaGAGTCTGCAGTCCCCGGAG | + |
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Preference number: 4 (lower is better) Translates to: EGRKATEKPVTTAWQEAGRGLRC*SLQSPE Trigger: CTCCGGGGACTGCAGACTTCAACATCTCAAGCCTCT...GCCTGCCTCCTGCCAGGCTGTAGTCACTGGCTTCTCAGTGGCTTTTCTTCCCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047740.4 |
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| CDS-3UTR TCA 90 bp | GAGGGAAGAAAAGCCACTGAGAAGCCAGTGACTACAGCCTGGCAGGAGGCAGGCTTACCTCCCGTGAGGTaGCATGGGGGCAAGGCAATT | + |
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Preference number: 4 (lower is better) Translates to: EGRKATEKPVTTAWQEAGLPPVR*HGGKAI Trigger: AATTGCCTTGCCCCCATGTCACCTCACGGGAGGTAA...GCCTGCCTCCTGCCAGGCTGTAGTCACTGGCTTCTCAGTGGCTTTTCTTCCCTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047740.4 |
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| CDS-3UTR CCA 90 bp | GGAGAGGGAAGAAAAGCCACTGAGAAGCCAGTGACTACAGCCTGGCAGGAGGCAATCAGGGGCAAGGTCTaGACAGGCAGTGTGGATGCC | + |
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Preference number: 4 (lower is better) Translates to: GEGRKATEKPVTTAWQEAIRGKV*TGSVDA Trigger: GGCATCCACACTGCCTGTCCAGACCTTGCCCCTGAT...TGCCTCCTGCCAGGCTGTAGTCACTGGCTTCTCAGTGGCTTTTCTTCCCTCTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047740.4 |
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| CDS-3UTR TCA 90 bp | GGGCGGGGAGAGGGAAGAAAAGCCACTGAGAAGCCAGTGACTACAGCCTGGCAGCAGACCAGAGAGGCTTaGGATGTTGAAGTCTGCAGT | + |
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Preference number: 4 (lower is better) Translates to: GRGEGRKATEKPVTTAWQQTREA*DVEVCS Trigger: ACTGCAGACTTCAACATCTCAAGCCTCTCTGGTCTG...CTGCCAGGCTGTAGTCACTGGCTTCTCAGTGGCTTTTCTTCCCTCTCCCCGCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047740.4 |
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| CDS-3UTR GCA 90 bp | AGAAAAGCCACTGAGAAGCCAGTGACTACAGCCTGGCAGGAGGCAGGCTGGACTTTTGCGGGCACCCAGTaGCAGGGCAACAATAAGACC | + |
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Preference number: 4 (lower is better) Translates to: RKATEKPVTTAWQEAGWTFAGTQ*QGNNKT Trigger: GGTCTTATTGTTGCCCTGGCACTGGGTGCCCGCAAA...AGTCCAGCCTGCCTCCTGCCAGGCTGTAGTCACTGGCTTCTCAGTGGCTTTTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047740.4 |
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| CDS-3UTR CCA 90 bp | GGAGAGGGAAGAAAAGCCACTGAGAAGCCAGTGACTACAGCCTGGCAGGAGGCAGGACATGGGAGTCTCTaGACTGGACTCGGTGGATGT | + |
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Preference number: 4 (lower is better) Translates to: GEGRKATEKPVTTAWQEAGHGSL*TGLGGC Trigger: ACATCCACCGAGTCCAGTCCAGAGACTCCCATGTCC...TGCCTCCTGCCAGGCTGTAGTCACTGGCTTCTCAGTGGCTTTTCTTCCCTCTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047740.4 |
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| CDS-3UTR CCA 90 bp | AGAAAAGCCACTGAGAAGCCAGTGACTACAGCCTGGCAGGAGGCAGGCTGGACTCGACCAACAGGAACATaGCCACAGACAGCAGCACTG | + |
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Preference number: 4 (lower is better) Translates to: RKATEKPVTTAWQEAGWTRPTGT*PQTAAL Trigger: CAGTGCTGCTGTCTGTGGCCATGTTCCTGTTGGTCG...AGTCCAGCCTGCCTCCTGCCAGGCTGTAGTCACTGGCTTCTCAGTGGCTTTTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047740.4 |
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| CDS-3UTR TCA 90 bp | GAGGGAAGAAAAGCCACTGAGAAGCCAGTGACTACAGCCTGGCAGGAGGCAGGCGTTAGGTTTGTCACCTaGTATGCGCTGAGCCTTGTG | + |
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Preference number: 4 (lower is better) Translates to: EGRKATEKPVTTAWQEAGVRFVT*YALSLV Trigger: CACAAGGCTCAGCGCATATCAGGTGACAAACCTAAC...GCCTGCCTCCTGCCAGGCTGTAGTCACTGGCTTCTCAGTGGCTTTTCTTCCCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047740.4 |
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| CDS-3UTR CAA 90 bp | CAGGATTGCAGTGGGGCTAGCAGGGAGTGCTGCAAGGTGAGACAGGGAGCAGGGGAGAGGCTTGAGATGTaGAAGTCTGCAGTCCCCGGA | + |
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Preference number: 5 (lower is better) Translates to: QDCSGASRECCKVRQGAGERLEM*KSAVPG Trigger: TCCGGGGACTGCAGACTTCAACATCTCAAGCCTCTC...CCCTGCTCCCTGTCTCACCTTGCAGCACTCCCTGCTAGCCCCACTGCAATCCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000047740.4 |
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| CDS-3UTR CAA 90 bp | GAGGGAAGAAAAGCCACTGAGAAGCCAGTGACTACAGCCTGGCAGGAGGCAGGCACCACTTTGCTGTCGTaGGCTCTCCGGACCATCAAT | + |
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Preference number: 5 (lower is better) Translates to: EGRKATEKPVTTAWQEAGTTLLS*ALRTIN Trigger: ATTGATGGTCCGGAGAGCCAACGACAGCAAAGTGGT...GCCTGCCTCCTGCCAGGCTGTAGTCACTGGCTTCTCAGTGGCTTTTCTTCCCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047740.4 |
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| CDS TCA 90 bp | TCGTTGGCTCTCCGGACCATCAATGTGGCATTACCTCCCGTGAGGTaGCATGGGGGCAAGGCAATTAACAGGCTTTCTGTTAGCGCCGGA | + |
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Preference number: 5 (lower is better) Translates to: SLALRTINVALPPVR*HGGKAINRLSVSAG Trigger: TCCGGCGCTAACAGAAAGCCTGTTAATTGCCTTGCCCCCATGTCACCTCACGGGAGGTAATGCCACATTGATGGTCCGGAGAGCCAACGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047740.4 |
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| CDS CCA 90 bp | TTTTTCGAGGAAGCGTGGACATGGGAGTCTCTGGACTGGACTCGGTaGATGTCCCCTTCTGTACTCGGTAGGATATGTAGTATTTGGTTC | + |
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Preference number: 5 (lower is better) Translates to: FFEEAWTWESLDWTR*MSPSVLGRICSIWF Trigger: GAACCAAATACTACATATCCTACCGAGTACAGAAGGGGACATCCACCGAGTCCAGTCCAGAGACTCCCATGTCCACGCTTCCTCGAAAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047740.4 |
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| CDS TCA 72 bp | GCGCCGGAGACAGCAGACCAGAGAGGCTTGAGATGTTaGAGTCTGCAGTCCCCGGAGCCAGGACAGCCAGCA | + |
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Preference number: 6 (lower is better) Translates to: APETADQRGLRC*SLQSPEPGQPA Trigger: TGCTGGCTGTCCTGGCTCCGGGGACTGCAGACTTCAACATCTCAAGCCTCTCTGGTCTGCTGTCTCCGGCGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047740.4 |
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| CDS CAA 72 bp | AGCGCCGGAGACAGCAGACCAGAGAGGCTTGAGATGTaGAAGTCTGCAGTCCCCGGAGCCAGGACAGCCAGC | + |
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Preference number: 6 (lower is better) Translates to: SAGDSRPERLEM*KSAVPGARTAS Trigger: GCTGGCTGTCCTGGCTCCGGGGACTGCAGACTTCAACATCTCAAGCCTCTCTGGTCTGCTGTCTCCGGCGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047740.4 |
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| CDS TCA 72 bp | CTCCCTGCGCCCGCGACATGGAGGCACCACAAAGTCTaGCTTAACCACTTTGCTGTCGTTGGCTCTCCGGAC | + |
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Preference number: 6 (lower is better) Translates to: LPAPATWRHHKV*LNHFAVVGSPD Trigger: GTCCGGAGAGCCAACGACAGCAAAGTGGTTAAGTCAGACTTTGTGGTGCCTCCATGTCGCGGGCGCAGGGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047740.4 |
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| CDS CCA 72 bp | TTTTTCGAGGAAGCGTGGACATGGGAGTCTCTGGACTaGACTCGGTGGATGTCCCCTTCTGTACTCGGTAGG | + |
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Preference number: 6 (lower is better) Translates to: FFEEAWTWESLD*TRWMSPSVLGR Trigger: CCTACCGAGTACAGAAGGGGACATCCACCGAGTCCAGTCCAGAGACTCCCATGTCCACGCTTCCTCGAAAAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047740.4 |
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| CDS CAA 72 bp | CGACATGGAGGCACCACAAAGTCTGACTTAACCACTTaGCTGTCGTTGGCTCTCCGGACCATCAATGTGGCA | + |
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Preference number: 6 (lower is better) Translates to: RHGGTTKSDLTT*LSLALRTINVA Trigger: TGCCACATTGATGGTCCGGAGAGCCAACGACAGCAAAGTGGTTAAGTCAGACTTTGTGGTGCCTCCATGTCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047740.4 |
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| CDS CCA 72 bp | ATGTCCCCTTCTGTACTCGGTAGGATATGTAGTATTTaGTTCCTGGTGTTAGGTTTGTCACCTGATATGCGC | + |
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Preference number: 6 (lower is better) Translates to: MSPSVLGRICSI*FLVLGLSPDMR Trigger: GCGCATATCAGGTGACAAACCTAACACCAGGAACCAAATACTACATATCCTACCGAGTACAGAAGGGGACAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047740.4 |
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