Pregenerated sensors for UPK1B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049436Ensembl transcript IDs: ENSMUST00000057767.6
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CATCTTGAAAGCCTAAAGGAAGCCCATTCCACCGGAACTGGCATTTaGGAGAAACAAGCACGAGTCACGGGGCAGAGCACACAGAGGGCG | + |
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Preference number: 1 (lower is better) Translates to: HLESLKEAHSTGTGI*EKQARVTGQSTQRA Trigger: CGCCCTCTGTGTGCTCTGCCCCGTGACTCGTGCTTGTTTCTCTCAAATGCCAGTTCCGGTGGAATGGGCTTCCTTTAGGCTTTCAAGATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| 3UTR TCA 90 bp | CACTGCAGACAGAAGTCACAGCAGAACCAGAGGCAGAAGAAAGCATaGCTGCCATTTCCTCCTCTTTCACAGTGCAACCCTCCTCCCCCA | + |
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Preference number: 1 (lower is better) Translates to: HCRQKSQQNQRQKKA*LPFPPLSQCNPPPP Trigger: TGGGGGAGGAGGGTTGCACTGTGAAAGAGGAGGAAATGGCAGTCATGCTTTCTTCTGCCTCTGGTTCTGCTGTGACTTCTGTCTGCAGTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| 3UTR-3UTR CCA 90 bp | AGAAAGCATGACTGCCATTTCCTCCTCTTTCACAGTGCAACCCTCCTCCCCCAGGGAGGGAGGGAGGTATaGTGGAGACACTGTCTGTGC | + |
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Preference number: 2 (lower is better) Translates to: RKHDCHFLLFHSATLLPQGGREV*WRHCLC Trigger: GCACAGACAGTGTCTCCACCATACCTCCCTCCCTCC...CTGGGGGAGGAGGGTTGCACTGTGAAAGAGGAGGAAATGGCAGTCATGCTTTCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| 3UTR-3UTR TCA 90 bp | CAACCCTCCTCCCCCAGCCTACACAGTGACAAACAAAAGTCTTTCAAGGTTGAAGGGCTCTCTGTTTCTTaGATTTGCTGCTCAATACAG | + |
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Preference number: 2 (lower is better) Translates to: QPSSPSLHSDKQKSFKVEGLSVS*ICCSIQ Trigger: CTGTATTGAGCAGCAAATTCAAGAAACAGAGAGCCC...TTCAACCTTGAAAGACTTTTGTTTGTCACTGTGTAGGCTGGGGGAGGAGGGTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| 3UTR-3UTR TCA 90 bp | GTACTGGAGACTAAAAGCATCCAAAAGTGTGAGGAACACTGCAGACAGAAGTCAAGGATTGCAGCATCTTaGAAGCCTAAAGGAAGCCCA | + |
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Preference number: 2 (lower is better) Translates to: VLETKSIQKCEEHCRQKSRIAAS*KPKGSP Trigger: TGGGCTTCCTTTAGGCTTTCAAGATGCTGCAATCCT...TGACTTCTGTCTGCAGTGTTCCTCACACTTTTGGATGCTTTTAGTCTCCAGTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| 3UTR-3UTR TCA 90 bp | ACTAAAAGCATCCAAAAGTGTGAGGAACACTGCAGACAGAAGTCACAGCAGAACAGGCAGAAGAAAGCATaGCTGCCATTTCCTCCTCTT | + |
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Preference number: 2 (lower is better) Translates to: TKSIQKCEEHCRQKSQQNRQKKA*LPFPPL Trigger: AAGAGGAGGAAATGGCAGTCATGCTTTCTTCTGCCT...GTTCTGCTGTGACTTCTGTCTGCAGTGTTCCTCACACTTTTGGATGCTTTTAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| 3UTR-3UTR GCA 90 bp | ACTAAAAGCATCCAAAAGTGTGAGGAACACTGCAGACAGAAGTCACAGCAGAACAGAAGAAAGCATGACTaGCATTTCCTCCTCTTTCAC | + |
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Preference number: 2 (lower is better) Translates to: TKSIQKCEEHCRQKSQQNRRKHD*HFLLFH Trigger: GTGAAAGAGGAGGAAATGGCAGTCATGCTTTCTTCT...GTTCTGCTGTGACTTCTGTCTGCAGTGTTCCTCACACTTTTGGATGCTTTTAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| 3UTR-3UTR CCA 90 bp | GTACTGGAGACTAAAAGCATCCAAAAGTGTGAGGAACACTGCAGACAGAAGTCAAAGAAAATAGAGAGATaGGCTCTCTGTTTCTTGAAT | + |
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Preference number: 2 (lower is better) Translates to: VLETKSIQKCEEHCRQKSKKIER*ALCFLN Trigger: ATTCAAGAAACAGAGAGCCCATCTCTCTATTTTCTT...TGACTTCTGTCTGCAGTGTTCCTCACACTTTTGGATGCTTTTAGTCTCCAGTAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| 3UTR TCA 72 bp | CAGAAGTCACAGCAGAACCAGAGGCAGAAGAAAGCATaGCTGCCATTTCCTCCTCTTTCACAGTGCAACCCT | + |
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Preference number: 3 (lower is better) Translates to: QKSQQNQRQKKA*LPFPPLSQCNP Trigger: AGGGTTGCACTGTGAAAGAGGAGGAAATGGCAGTCATGCTTTCTTCTGCCTCTGGTTCTGCTGTGACTTCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| 3UTR-3UTR CAA 90 bp | CAACCCTCCTCCCCCAGCCTACACAGTGACAAACAAAAGTCTTTCAAGGTTGAACACCGGAACTGGCATTaGAGAGAAACAAGCACGAGT | + |
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Preference number: 3 (lower is better) Translates to: QPSSPSLHSDKQKSFKVEHRNWH*RETSTS Trigger: ACTCGTGCTTGTTTCTCTCAAATGCCAGTTCCGGTG...TTCAACCTTGAAAGACTTTTGTTTGTCACTGTGTAGGCTGGGGGAGGAGGGTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| 3UTR-3UTR CAA 90 bp | TCTTTCACAGTGCAACCCTCCTCCCCCAGCCTACACAGTGACAAACAAAAGTCTTGGGCTCTCTGTTTCTaGAATTTGCTGCTCAATACA | + |
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Preference number: 3 (lower is better) Translates to: SFTVQPSSPSLHSDKQKSWALCF*NLLLNT Trigger: TGTATTGAGCAGCAAATTCAAGAAACAGAGAGCCCA...AGACTTTTGTTTGTCACTGTGTAGGCTGGGGGAGGAGGGTTGCACTGTGAAAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| 3UTR TCA 72 bp | TTGACAGCAAACAAAAGACCCTATAAATCACTTGTTTaGATAGCTGGCATGGATCCCGCGGTTTGGGAAGTG | + |
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Preference number: 3 (lower is better) Translates to: LTANKRPYKSLV*IAGMDPAVWEV Trigger: CACTTCCCAAACCGCGGGATCCATGCCAGCTATTCAAACAAGTGATTTATAGGGTCTTTTGTTTGCTGTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| 3UTR TCA 72 bp | GGTGACTTGTCAGGACTTCCTTCAGGATCGTTAATGTaGGCAAACTATTTTGACAGCAAACAAAAGACCCTA | + |
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Preference number: 3 (lower is better) Translates to: GDLSGLPSGSLM*ANYFDSKQKTL Trigger: TAGGGTCTTTTGTTTGCTGTCAAAATAGTTTGCTCACATTAACGATCCTGAAGGAAGTCCTGACAAGTCACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| 3UTR TCA 72 bp | ATATCATTGTGCCTCCACATTAAACATAGACAGGAATaGGAGTCGTCTCCATTCTCCAAACTTTCTGTCTTA | + |
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Preference number: 3 (lower is better) Translates to: ISLCLHIKHRQE*ESSPFSKLSVL Trigger: TAAGACAGAAAGTTTGGAGAATGGAGACGACTCTCATTCCTGTCTATGTTTAATGTGGAGGCACAATGATAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS-3UTR GCA 90 bp | AAACAGCAGGTTCCAGCACCAAATTCAGAGTCACCCAGGGAGGGAGGGAGGTATCCACAGCAGTGGTCCTaGAGCATGAGCCTATCCCAG | + |
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Preference number: 4 (lower is better) Translates to: KQQVPAPNSESPREGGRYPQQWS*SMSLSQ Trigger: CTGGGATAGGCTCATGCTGCAGGACCACTGCTGTGG...ATACCTCCCTCCCTCCCTGGGTGACTCTGAATTTGGTGCTGGAACCTGCTGTTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS-3UTR CCA 90 bp | ATTTCCTCCTCTTTCACAGTGCAACCCTCCTCCCCCAGCCTACACAGTGACAAATTTACACCACAGCAGTaGTCCTGCAGCATGAGCCTA | + |
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Preference number: 4 (lower is better) Translates to: ISSSFTVQPSSPSLHSDKFTPQQ*SCSMSL Trigger: TAGGCTCATGCTGCAGGACCACTGCTGTGGTGTAAA...TTTGTCACTGTGTAGGCTGGGGGAGGAGGGTTGCACTGTGAAAGAGGAGGAAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS-3UTR GCA 90 bp | AGAAAGCATGACTGCCATTTCCTCCTCTTTCACAGTGCAACCCTCCTCCCCCAGTACCTCATCAGCATCTaGTTCAGGAAGAGGTTGGTT | + |
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Preference number: 4 (lower is better) Translates to: RKHDCHFLLFHSATLLPQYLISI*FRKRLV Trigger: AACCAACCTCTTCCTGAAGCAGATGCTGATGAGGTA...CTGGGGGAGGAGGGTTGCACTGTGAAAGAGGAGGAAATGGCAGTCATGCTTTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS-3UTR GCA 90 bp | CAGTGCAACCCTCCTCCCCCAGCCTACACAGTGACAAACAAAAGTCTTTCAAGGTGCTGTGATGCAAGATaGCACTTCAAAACCGTACAC | + |
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Preference number: 4 (lower is better) Translates to: QCNPPPPAYTVTNKSLSRCCDAR*HFKTVH Trigger: GTGTACGGTTTTGAAGTGGCATCTTGCATCACAGCA...CCTTGAAAGACTTTTGTTTGTCACTGTGTAGGCTGGGGGAGGAGGGTTGCACTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS-3UTR GCA 90 bp | ACTAAAAGCATCCAAAAGTGTGAGGAACACTGCAGACAGAAGTCACAGCAGAACAGCAGAAGAGGCAGATaGCCACGAACATGCCTATCC | + |
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Preference number: 4 (lower is better) Translates to: TKSIQKCEEHCRQKSQQNSRRGR*PRTCLS Trigger: GGATAGGCATGTTCGTGGGCATCTGCCTCTTCTGCT...GTTCTGCTGTGACTTCTGTCTGCAGTGTTCCTCACACTTTTGGATGCTTTTAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS-3UTR GCA 90 bp | CTGGAGACTAAAAGCATCCAAAAGTGTGAGGAACACTGCAGACAGAAGTCACAGGCAGAGGTGTATTTCTaGCAGTCTGACGGACCGTTT | + |
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Preference number: 4 (lower is better) Translates to: LETKSIQKCEEHCRQKSQAEVYF*QSDGPF Trigger: AAACGGTCCGTCAGACTGGCAGAAATACACCTCTGC...CTGTGACTTCTGTCTGCAGTGTTCCTCACACTTTTGGATGCTTTTAGTCTCCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS-3UTR TCA 90 bp | TGGAGACTAAAAGCATCCAAAAGTGTGAGGAACACTGCAGACAGAAGTCACAGCGTTGTGTTGCTGCTGTaGTGCAAGATGCCACTTCAA | + |
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Preference number: 4 (lower is better) Translates to: WRLKASKSVRNTADRSHSVVLLL*CKMPLQ Trigger: TTGAAGTGGCATCTTGCATCACAGCAGCAACACAAC...GCTGTGACTTCTGTCTGCAGTGTTCCTCACACTTTTGGATGCTTTTAGTCTCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS-3UTR CCA 90 bp | ACTAAAAGCATCCAAAAGTGTGAGGAACACTGCAGACAGAAGTCACAGCAGAACGGTGGCTTCGAGAAGTaGGTAAAGACTGTGTTGGTC | + |
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Preference number: 4 (lower is better) Translates to: TKSIQKCEEHCRQKSQQNGGFEK*VKTVLV Trigger: GACCAACACAGTCTTTACCCACTTCTCGAAGCCACC...GTTCTGCTGTGACTTCTGTCTGCAGTGTTCCTCACACTTTTGGATGCTTTTAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS-3UTR TCA 90 bp | ATTTTATGGGCTCCTTTATTTATGGATAGGCAAACAAATGGTGACTTGTCAGGAAGTGGTCCTGCAGCATaGGCCTATCCCAGGTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: ILWAPLFMDRQTNGDLSGSGPAA*AYPRSW Trigger: CCAAGACCTGGGATAGGCTCATGCTGCAGGACCACT...TCCTGACAAGTCACCATTTGTTTGCCTATCCATAAATAAAGGAGCCCATAAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS-3UTR CCA 90 bp | TTGTACTGGAGACTAAAAGCATCCAAAAGTGTGAGGAACACTGCAGACAGAAGTAAGTCCAGCAGAGGATaGCAAATCCAAACCAGGCAA | + |
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Preference number: 4 (lower is better) Translates to: LYWRLKASKSVRNTADRSKSSRG*QIQTRQ Trigger: TTGCCTGGTTTGGATTTGCCATCCTCTGCTGGACTT...ACTTCTGTCTGCAGTGTTCCTCACACTTTTGGATGCTTTTAGTCTCCAGTACAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS-3UTR GCA 90 bp | ATTTTATGGGCTCCTTTATTTATGGATAGGCAAACAAATGGTGACTTGTCAGGATCCAGTAGAACATGGTaGCCAGGAGAACCCAAAAAG | + |
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Preference number: 4 (lower is better) Translates to: ILWAPLFMDRQTNGDLSGSSRTW*PGEPKK Trigger: CTTTTTGGGTTCTCCTGGGCACCATGTTCTACTGGA...TCCTGACAAGTCACCATTTGTTTGCCTATCCATAAATAAAGGAGCCCATAAAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS-3UTR CCA 90 bp | TGGGCTCTCTGTTTCTTGAATTTGCTGCTCAATACAGACAGAGCTTATAATGAAAAAATCAACAGGCCCTaGAAGCAACGAACAGTGGAA | + |
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Preference number: 4 (lower is better) Translates to: WALCFLNLLLNTDRAYNEKINRP*KQRTVE Trigger: TTCCACTGTTCGTTGCTTCCAGGGCCTGTTGATTTT...TTCATTATAAGCTCTGTCTGTATTGAGCAGCAAATTCAAGAAACAGAGAGCCCA 41% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| 3UTR CAA 72 bp | AAGAAAATAGAGAGATGGGCTCTCTGTTTCTTGAATTaGCTGCTCAATACAGACAGAGCTTATAATGAATGG | + |
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Preference number: 4 (lower is better) Translates to: KKIERWALCFLN*LLNTDRAYNEW Trigger: CCATTCATTATAAGCTCTGTCTGTATTGAGCAGCAAATTCAAGAAACAGAGAGCCCATCTCTCTATTTTCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| 3UTR CAA 72 bp | AGGTTGAAGAAAATAGAGAGATGGGCTCTCTGTTTCTaGAATTTGCTGCTCAATACAGACAGAGCTTATAAT | + |
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Preference number: 4 (lower is better) Translates to: RLKKIERWALCF*NLLLNTDRAYN Trigger: ATTATAAGCTCTGTCTGTATTGAGCAGCAAATTCAAGAAACAGAGAGCCCATCTCTCTATTTTCTTCAACCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS CCA 90 bp | CCACGAACATGCCTATCCAAGCTGCCCCGAAGATATCATCATTGTTaGTGGCTTCGAGAAGTGGGTAAAGACTGTGTTGGTCAGATACAA | + |
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Preference number: 5 (lower is better) Translates to: PRTCLSKLPRRYHHC*WLREVGKDCVGQIQ Trigger: TTGTATCTGACCAACACAGTCTTTACCCACTTCTCGAAGCCACCAACAATGATGATATCTTCGGGGCAGCTTGGATAGGCATGTTCGTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS-3UTR CAA 90 bp | GAAACAGCAGGTTCCAGCACCAAATTCAGAGTCACCCAGGGAGGGAGGGAGGTAAAGAGGATTTTCCTGTaGGACTTCATAATTCCTACT | + |
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Preference number: 5 (lower is better) Translates to: ETAGSSTKFRVTQGGREVKRIFL*DFIIPT Trigger: AGTAGGAATTATGAAGTCCAACAGGAAAATCCTCTT...TACCTCCCTCCCTCCCTGGGTGACTCTGAATTTGGTGCTGGAACCTGCTGTTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS TCA 90 bp | CCGTTGTTCTTCCATTCGTCGTCATTGGTTGGGGGACTGTTGTTTTaGTACCTCATCAGCATCTGCTTCAGGAAGAGGTTGGTTGTGAAA | + |
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Preference number: 5 (lower is better) Translates to: PLFFHSSSLVGGLLF*YLISICFRKRLVVK Trigger: TTTCACAACCAACCTCTTCCTGAAGCAGATGCTGATGAGGTATCAAAACAACAGTCCCCCAACCAATGACGACGAATGGAAGAACAACGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS CCA 90 bp | CCAAGCTGCCCCGAAGATATCATCATTGTTGGTGGCTTCGAGAAGTaGGTAAAGACTGTGTTGGTCAGATACAAAGAAGATACACTCTGC | + |
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Preference number: 5 (lower is better) Translates to: PSCPEDIIIVGGFEK*VKTVLVRYKEDTLC Trigger: GCAGAGTGTATCTTCTTTGTATCTGACCAACACAGTCTTTACCCACTTCTCGAAGCCACCAACAATGATGATATCTTCGGGGCAGCTTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS CCA 90 bp | CGAACATGCCTATCCAAGCTGCCCCGAAGATATCATCATTGTTGGTaGCTTCGAGAAGTGGGTAAAGACTGTGTTGGTCAGATACAAAGA | + |
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Preference number: 5 (lower is better) Translates to: RTCLSKLPRRYHHCW*LREVGKDCVGQIQR Trigger: TCTTTGTATCTGACCAACACAGTCTTTACCCACTTCTCGAAGCCACCAACAATGATGATATCTTCGGGGCAGCTTGGATAGGCATGTTCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS-3UTR CAA 90 bp | ACTAAAAGCATCCAAAAGTGTGAGGAACACTGCAGACAGAAGTCACAGCAGAACTGTGAAAAAGTCGCGTaGTGTTGCTGCTGTGATGCA | + |
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Preference number: 5 (lower is better) Translates to: TKSIQKCEEHCRQKSQQNCEKVA*CCCCDA Trigger: TGCATCACAGCAGCAACACAACGCGACTTTTTCACA...GTTCTGCTGTGACTTCTGTCTGCAGTGTTCCTCACACTTTTGGATGCTTTTAGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS GCA 90 bp | AAGTGGGTAAAGACTGTGTTGGTCAGATACAAAGAAGATACACTCTaGTGTCAGGGCGATGCCACACATACCAACAATTACGTGTCCAAA | + |
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Preference number: 5 (lower is better) Translates to: KWVKTVLVRYKEDTL*CQGDATHTNNYVSK Trigger: TTTGGACACGTAATTGTTGGTATGTGTGGCATCGCCCTGACAGCAGAGTGTATCTTCTTTGTATCTGACCAACACAGTCTTTACCCACTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS-3UTR CAA 90 bp | CAACCCTCCTCCCCCAGCCTACACAGTGACAAACAAAAGTCTTTCAAGGTTGAATGGGTAAAGACTGTGTaGGTCAGATACAAAGAAGAT | + |
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Preference number: 5 (lower is better) Translates to: QPSSPSLHSDKQKSFKVEWVKTV*VRYKED Trigger: ATCTTCTTTGTATCTGACCAACACAGTCTTTACCCA...TTCAACCTTGAAAGACTTTTGTTTGTCACTGTGTAGGCTGGGGGAGGAGGGTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS-3UTR CAA 90 bp | TTGTACTGGAGACTAAAAGCATCCAAAAGTGTGAGGAACACTGCAGACAGAAGTTGCTTCAGGAAGAGGTaGGTTGTGAAAAAGTCGCGT | + |
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Preference number: 5 (lower is better) Translates to: LYWRLKASKSVRNTADRSCFRKR*VVKKSR Trigger: ACGCGACTTTTTCACAACCAACCTCTTCCTGAAGCA...ACTTCTGTCTGCAGTGTTCCTCACACTTTTGGATGCTTTTAGTCTCCAGTACAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS-3UTR CAA 90 bp | ATTTTATGGGCTCCTTTATTTATGGATAGGCAAACAAATGGTGACTTGTCAGGAAGGCATGCCGGTCCATaGGTCCAGAGATCAGTTCAT | + |
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Preference number: 5 (lower is better) Translates to: ILWAPLFMDRQTNGDLSGRHAGP*VQRSVH Trigger: ATGAACTGATCTCTGGACCAATGGACCGGCATGCCT...TCCTGACAAGTCACCATTTGTTTGCCTATCCATAAATAAAGGAGCCCATAAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS GCA 72 bp | CAGTCTGACGGACCGTTTACACCACAGCAGTGGTCCTaGAGCATGAGCCTATCCCAGGTCTTGGTGACCCCG | + |
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Preference number: 6 (lower is better) Translates to: QSDGPFTPQQWS*SMSLSQVLVTP Trigger: CGGGGTCACCAAGACCTGGGATAGGCTCATGCTGCAGGACCACTGCTGTGGTGTAAACGGTCCGTCAGACTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS TCA 72 bp | CTCCACCCGGAAGGCAGAGGTGTATTTCTGCCAGTCTaGCGGACCGTTTACACCACAGCAGTGGTCCTGCAG | + |
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Preference number: 6 (lower is better) Translates to: LHPEGRGVFLPV*RTVYTTAVVLQ Trigger: CTGCAGGACCACTGCTGTGGTGTAAACGGTCCGTCAGACTGGCAGAAATACACCTCTGCCTTCCGGGTGGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS CAA 72 bp | TGCAGCATGAGCCTATCCCAGGTCTTGGTGACCCCGTaGTTCTTCCATTCGTCGTCATTGGTTGGGGGACTG | + |
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Preference number: 6 (lower is better) Translates to: CSMSLSQVLVTP*FFHSSSLVGGL Trigger: CAGTCCCCCAACCAATGACGACGAATGGAAGAACAACGGGGTCACCAAGACCTGGGATAGGCTCATGCTGCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS CAA 72 bp | CAGCAGTGGTCCTGCAGCATGAGCCTATCCCAGGTCTaGGTGACCCCGTTGTTCTTCCATTCGTCGTCATTG | + |
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Preference number: 6 (lower is better) Translates to: QQWSCSMSLSQV*VTPLFFHSSSL Trigger: CAATGACGACGAATGGAAGAACAACGGGGTCACCAAGACCTGGGATAGGCTCATGCTGCAGGACCACTGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS GCA 72 bp | CTACTATGGCTAGAACGGACAAGCAGAAGAGGCAGATaGCCACGAACATGCCTATCCAAGCTGCCCCGAAGA | + |
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Preference number: 6 (lower is better) Translates to: LLWLERTSRRGR*PRTCLSKLPRR Trigger: TCTTCGGGGCAGCTTGGATAGGCATGTTCGTGGGCATCTGCCTCTTCTGCTTGTCCGTTCTAGCCATAGTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS GCA 72 bp | TCGTTATTCTCCACCCGGAAGGCAGAGGTGTATTTCTaGCAGTCTGACGGACCGTTTACACCACAGCAGTGG | + |
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Preference number: 6 (lower is better) Translates to: SLFSTRKAEVYF*QSDGPFTPQQW Trigger: CCACTGCTGTGGTGTAAACGGTCCGTCAGACTGGCAGAAATACACCTCTGCCTTCCGGGTGGAGAATAACGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS GCA 72 bp | GAAGAGGCAGATGCCCACGAACATGCCTATCCAAGCTaGCCCGAAGATATCATCATTGTTGGTGGCTTCGAG | + |
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Preference number: 6 (lower is better) Translates to: EEADAHEHAYPS*PEDIIIVGGFE Trigger: CTCGAAGCCACCAACAATGATGATATCTTCGGGGCAGCTTGGATAGGCATGTTCGTGGGCATCTGCCTCTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS CCA 72 bp | CTATCCAAGCTGCCCCGAAGATATCATCATTGTTGGTaGCTTCGAGAAGTGGGTAAAGACTGTGTTGGTCAG | + |
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Preference number: 6 (lower is better) Translates to: LSKLPRRYHHCW*LREVGKDCVGQ Trigger: CTGACCAACACAGTCTTTACCCACTTCTCGAAGCCACCAACAATGATGATATCTTCGGGGCAGCTTGGATAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS CAA 90 bp | CCCGTTGTTCTTCCATTCGTCGTCATTGGTTGGGGGACTGTTGTTTaGATACCTCATCAGCATCTGCTTCAGGAAGAGGTTGGTTGTGAA | + |
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Preference number: 6 (lower is better) Translates to: PVVLPFVVIGWGTVV*IPHQHLLQEEVGCE Trigger: TTCACAACCAACCTCTTCCTGAAGCAGATGCTGATGAGGTATCAAAACAACAGTCCCCCAACCAATGACGACGAATGGAAGAACAACGGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS CAA 90 bp | GATATCATCATTGTTGGTGGCTTCGAGAAGTGGGTAAAGACTGTGTaGGTCAGATACAAAGAAGATACACTCTGCTGTCAGGGCGATGCC | + |
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Preference number: 6 (lower is better) Translates to: DIIIVGGFEKWVKTV*VRYKEDTLCCQGDA Trigger: GGCATCGCCCTGACAGCAGAGTGTATCTTCTTTGTATCTGACCAACACAGTCTTTACCCACTTCTCGAAGCCACCAACAATGATGATATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS GCA 72 bp | CAGGAAGAGGTTGGTTGTGAAAAAGTCGCGTTGTGTTaGTGCTGTGATGCAAGATGCCACTTCAAAACCGTA | + |
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Preference number: 6 (lower is better) Translates to: QEEVGCEKVALC*CCDARCHFKTV Trigger: TACGGTTTTGAAGTGGCATCTTGCATCACAGCAGCAACACAACGCGACTTTTTCACAACCAACCTCTTCCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS CAA 72 bp | CTTCCATTCGTCGTCATTGGTTGGGGGACTGTTGTTTaGATACCTCATCAGCATCTGCTTCAGGAAGAGGTT | + |
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Preference number: 6 (lower is better) Translates to: LPFVVIGWGTVV*IPHQHLLQEEV Trigger: AACCTCTTCCTGAAGCAGATGCTGATGAGGTATCAAAACAACAGTCCCCCAACCAATGACGACGAATGGAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS GCA 72 bp | AAGACTGTGTTGGTCAGATACAAAGAAGATACACTCTaGTGTCAGGGCGATGCCACACATACCAACAATTAC | + |
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Preference number: 6 (lower is better) Translates to: KTVLVRYKEDTL*CQGDATHTNNY Trigger: GTAATTGTTGGTATGTGTGGCATCGCCCTGACAGCAGAGTGTATCTTCTTTGTATCTGACCAACACAGTCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS CAA 72 bp | ATTGTTGGTGGCTTCGAGAAGTGGGTAAAGACTGTGTaGGTCAGATACAAAGAAGATACACTCTGCTGTCAG | + |
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Preference number: 6 (lower is better) Translates to: IVGGFEKWVKTV*VRYKEDTLCCQ Trigger: CTGACAGCAGAGTGTATCTTCTTTGTATCTGACCAACACAGTCTTTACCCACTTCTCGAAGCCACCAACAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS GCA 72 bp | CAGATACAAAGAAGATACACTCTGCTGTCAGGGCGATaGCACACATACCAACAATTACGTGTCCAAAAATCA | + |
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Preference number: 6 (lower is better) Translates to: QIQRRYTLLSGR*HTYQQLRVQKS Trigger: TGATTTTTGGACACGTAATTGTTGGTATGTGTGGCATCGCCCTGACAGCAGAGTGTATCTTCTTTGTATCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS CCA 72 bp | CCCGAAGATATCATCATTGTTGGTGGCTTCGAGAAGTaGGTAAAGACTGTGTTGGTCAGATACAAAGAAGAT | + |
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Preference number: 6 (lower is better) Translates to: PEDIIIVGGFEK*VKTVLVRYKED Trigger: ATCTTCTTTGTATCTGACCAACACAGTCTTTACCCACTTCTCGAAGCCACCAACAATGATGATATCTTCGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS CAA 72 bp | AACATCATGATGAAGTACGCCAAGAGGATTTTCCTGTaGGACTTCATAATTCCTACTATGGCTAGAACGGAC | + |
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Preference number: 6 (lower is better) Translates to: NIMMKYAKRIFL*DFIIPTMARTD Trigger: GTCCGTTCTAGCCATAGTAGGAATTATGAAGTCCAACAGGAAAATCCTCTTGGCGTACTTCATCATGATGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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| CDS CAA 90 bp | TACACTATAAACATCATGATGAAGTACGCCAAGAGGATTTTCCTGTaGGACTTCATAATTCCTACTATGGCTAGAACGGACAAGCAGAAG | + |
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Preference number: 6 (lower is better) Translates to: YTINIMMKYAKRIFL*DFIIPTMARTDKQK Trigger: CTTCTGCTTGTCCGTTCTAGCCATAGTAGGAATTATGAAGTCCAACAGGAAAATCCTCTTGGCGTACTTCATCATGATGTTTATAGTGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057767.6 |
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