Pregenerated sensors for UPK1A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000006313Ensembl transcript IDs: ENSMUST00000006476.6
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGTGGGTTGAGGCTGAGGTACACGGAGGTGGGATGGGGAGGAGGTTaGGGCTGTCCAAGCATGTGCAGCAGCGAGGCAGGAGCTTCAGGC | + |
|
Preference number: 1 (lower is better) Translates to: GGLRLRYTEVGWGGG*GCPSMCSSEAGASG Trigger: GCCTGAAGCTCCTGCCTCGCTGCTGCACATGCTTGGACAGCCTCAACCTCCTCCCCATCCCACCTCCGTGTACCTCAGCCTCAACCCACC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| 3UTR CCA 90 bp | GTACAGGGAGGGCCCGAGGCAGCTCCTACATCTAGAAAGGGATGTTaGGATCACAAGAAGGGAAAATGGAGGGAGGTGGATGGGGTGGGT | + |
|
Preference number: 1 (lower is better) Translates to: VQGGPEAAPTSRKGC*DHKKGKWREVDGVG Trigger: ACCCACCCCATCCACCTCCCTCCATTTTCCCTTCTTGTGATCCCAACATCCCTTTCTAGATGTAGGAGCTGCCTCGGGCCCTCCCTGTAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| 3UTR CCA 90 bp | AGCTTAAAACTACTGAGCAGCAGTGGCTACACCTGCAAGAAGTTATaGAAGCCACAGTTCGGGGCAGGATGGGTTGTTAGGAGCAGCGGA | + |
|
Preference number: 1 (lower is better) Translates to: SLKLLSSSGYTCKKL*KPQFGAGWVVRSSG Trigger: TCCGCTGCTCCTAACAACCCATCCTGCCCCGAACTGTGGCTTCCATAACTTCTTGCAGGTGTAGCCACTGCTGCTCAGTAGTTTTAAGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| 3UTR-3UTR GCA 90 bp | CAGGCCCAGGGGTACAGGGAGGGCCCGAGGCAGCTCCTACATCTAGAAAGGGATAGCTTCAGGCCAAGGTaGATCTATGGCCTCCCCTTC | + |
|
Preference number: 2 (lower is better) Translates to: QAQGYREGPRQLLHLERDSFRPR*IYGLPF Trigger: GAAGGGGAGGCCATAGATGCACCTTGGCCTGAAGCT...ATCCCTTTCTAGATGTAGGAGCTGCCTCGGGCCCTCCCTGTACCCCTGGGCCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| 3UTR CCA 72 bp | TGCAAGAAGTTATGGAAGCCACAGTTCGGGGCAGGATaGGTTGTTAGGAGCAGCGGAAGGGCCTCTAAGGAC | + |
|
Preference number: 3 (lower is better) Translates to: CKKLWKPQFGAG*VVRSSGRASKD Trigger: GTCCTTAGAGGCCCTTCCGCTGCTCCTAACAACCCATCCTGCCCCGAACTGTGGCTTCCATAACTTCTTGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| 3UTR CCA 72 bp | CTACTGAGCAGCAGTGGCTACACCTGCAAGAAGTTATaGAAGCCACAGTTCGGGGCAGGATGGGTTGTTAGG | + |
|
Preference number: 3 (lower is better) Translates to: LLSSSGYTCKKL*KPQFGAGWVVR Trigger: CCTAACAACCCATCCTGCCCCGAACTGTGGCTTCCATAACTTCTTGCAGGTGTAGCCACTGCTGCTCAGTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| 3UTR-3UTR CAA 90 bp | GCGTATAAGAGCTTAAAACTACTGAGCAGCAGTGGCTACACCTGCAAGAAGTTATCGGGGCAGGATGGGTaGTTAGGAGCAGCGGAAGGG | + |
|
Preference number: 3 (lower is better) Translates to: AYKSLKLLSSSGYTCKKLSGQDG*LGAAEG Trigger: CCCTTCCGCTGCTCCTAACAACCCATCCTGCCCCGA...TAACTTCTTGCAGGTGTAGCCACTGCTGCTCAGTAGTTTTAAGCTCTTATACGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| 3UTR GCA 72 bp | AAGAGCTTAAAACTACTGAGCAGCAGTGGCTACACCTaGAAGAAGTTATGGAAGCCACAGTTCGGGGCAGGA | + |
|
Preference number: 3 (lower is better) Translates to: KSLKLLSSSGYT*KKLWKPQFGAG Trigger: TCCTGCCCCGAACTGTGGCTTCCATAACTTCTTGCAGGTGTAGCCACTGCTGCTCAGTAGTTTTAAGCTCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS-3UTR CCA 90 bp | GAGGCTGTCCAAGCATGTGCAGCAGCGAGGCAGGAGCTTCAGGCCAAGGTGCATACACCACTTCCGGGGTaGCTGCCCGGAAGGCTGATG | + |
|
Preference number: 4 (lower is better) Translates to: EAVQACAAARQELQAKVHTPLPG*LPGRLM Trigger: CATCAGCCTTCCGGGCAGCCACCCCGGAAGTGGTGT...ATGCACCTTGGCCTGAAGCTCCTGCCTCGCTGCTGCACATGCTTGGACAGCCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS-3UTR TCA 90 bp | ACTGAGCAGCAGTGGCTACACCTGCAAGAAGTTATGGAAGCCACAGTTCGGGGCGGTGGGTGTAGGATGTaGTGCAGGAGGCACACTCGA | + |
|
Preference number: 4 (lower is better) Translates to: TEQQWLHLQEVMEATVRGGGCRM*CRRHTR Trigger: TCGAGTGTGCCTCCTGCATCACATCCTACACCCACC...GCCCCGAACTGTGGCTTCCATAACTTCTTGCAGGTGTAGCCACTGCTGCTCAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS-3UTR TCA 90 bp | ATGATGGGAACCCCCACAATGACCACGGCAGAACGTGTCACCCTCCTCTTTTCGGGCTGCCCGGAAGGCTaGTGTGTAATTCACCCAGTC | + |
|
Preference number: 4 (lower is better) Translates to: MMGTPTMTTAERVTLLFSGCPEG*CVIHPV Trigger: GACTGGGTGAATTACACATCAGCCTTCCGGGCAGCC...CGAAAAGAGGAGGGTGACACGTTCTGCCGTGGTCATTGTGGGGGTTCCCATCAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS-3UTR CCA 90 bp | ATGATGGGAACCCCCACAATGACCACGGCAGAACGTGTCACCCTCCTCTTTTCGAGAAGCCGCAGAAGATaGCAATCCAGGCGCCAGCGA | + |
|
Preference number: 4 (lower is better) Translates to: MMGTPTMTTAERVTLLFSRSRRR*QSRRQR Trigger: TCGCTGGCGCCTGGATTGCCATCTTCTGCGGCTTCT...CGAAAAGAGGAGGGTGACACGTTCTGCCGTGGTCATTGTGGGGGTTCCCATCAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS-3UTR TCA 90 bp | ATGATGGGAACCCCCACAATGACCACGGCAGAACGTGTCACCCTCCTCTTTTCGCGAAGATGTAGACGATaGGCATCAGCAGCAGGTACG | + |
|
Preference number: 4 (lower is better) Translates to: MMGTPTMTTAERVTLLFSRRCRR*ASAAGT Trigger: CGTACCTGCTGCTGATGCTCATCGTCTACATCTTCG...CGAAAAGAGGAGGGTGACACGTTCTGCCGTGGTCATTGTGGGGGTTCCCATCAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS-3UTR GCA 90 bp | GTCAGCCAAGTGAAGCAGGGTCAAGAGGTTCTGGGCACACAAATCCAGGCCCAGGCCCTGGTCAGTGTCTaGACTGTAGTAGGTCAACAT | + |
|
Preference number: 4 (lower is better) Translates to: VSQVKQGQEVLGTQIQAQALVSV*TVVGQH Trigger: ATGTTGACCTACTACAGTGCAGACACTGACCAGGGC...CTGGGCCTGGATTTGTGTGCCCAGAACCTCTTGACCCTGCTTCACTTGGCTGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS-3UTR CCA 90 bp | ACTGAGCAGCAGTGGCTACACCTGCAAGAAGTTATGGAAGCCACAGTTCGGGGCAATTCACCCAGTCCATaGGGCCAGATGTGCCACAAC | + |
|
Preference number: 4 (lower is better) Translates to: TEQQWLHLQEVMEATVRGNSPSP*GQMCHN Trigger: GTTGTGGCACATCTGGCCCCATGGACTGGGTGAATT...GCCCCGAACTGTGGCTTCCATAACTTCTTGCAGGTGTAGCCACTGCTGCTCAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS-3UTR CCA 90 bp | TCCAAGCATGTGCAGCAGCGAGGCAGGAGCTTCAGGCCAAGGTGCATCTATGGCGGGTCCACATCAAGATaGCAAAGCCAAACCACGATA | + |
|
Preference number: 4 (lower is better) Translates to: SKHVQQRGRSFRPRCIYGGSTSR*QSQTTI Trigger: TATCGTGGTTTGGCTTTGCCATCTTGATGTGGACCC...GCCATAGATGCACCTTGGCCTGAAGCTCCTGCCTCGCTGCTGCACATGCTTGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS-3UTR GCA 90 bp | CAGACACATGTTGGGGTGATGATGGGAACCCCCACAATGACCACGGCAGAACGTGTGCCACAACACTCTTaGTCAATCATGATCCGGTCC | + |
|
Preference number: 4 (lower is better) Translates to: QTHVGVMMGTPTMTTAERVPQHS*SIMIRS Trigger: GGACCGGATCATGATTGAGCAAGAGTGTTGTGGCAC...ACGTTCTGCCGTGGTCATTGTGGGGGTTCCCATCATCACCCCAACATGTGTCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS-3UTR CCA 90 bp | GCGTATAAGAGCTTAAAACTACTGAGCAGCAGTGGCTACACCTGCAAGAAGTTACCGACGACAGCACAGTaGGGGCCACGGGAACACCAC | + |
|
Preference number: 4 (lower is better) Translates to: AYKSLKLLSSSGYTCKKLPTTAQ*GPREHH Trigger: GTGGTGTTCCCGTGGCCCCCACTGTGCTGTCGTCGG...TAACTTCTTGCAGGTGTAGCCACTGCTGCTCAGTAGTTTTAAGCTCTTATACGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS-3UTR TCA 90 bp | AGCTTAAAACTACTGAGCAGCAGTGGCTACACCTGCAAGAAGTTATGGAAGCCAGACATCATCCTTGCCTaGGACGCCCATCAGTGGGTA | + |
|
Preference number: 4 (lower is better) Translates to: SLKLLSSSGYTCKKLWKPDIILA*DAHQWV Trigger: TACCCACTGATGGGCGTCTCAGGCAAGGATGATGTC...TGGCTTCCATAACTTCTTGCAGGTGTAGCCACTGCTGCTCAGTAGTTTTAAGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS-3UTR TCA 90 bp | AGCTTAAAACTACTGAGCAGCAGTGGCTACACCTGCAAGAAGTTATGGAAGCCATCAGCAGCAGGTACGTaGGGATCATGTACCGACGAC | + |
|
Preference number: 4 (lower is better) Translates to: SLKLLSSSGYTCKKLWKPSAAGT*GSCTDD Trigger: GTCGTCGGTACATGATCCTCACGTACCTGCTGCTGA...TGGCTTCCATAACTTCTTGCAGGTGTAGCCACTGCTGCTCAGTAGTTTTAAGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS-3UTR GCA 90 bp | CATCTAGAAAGGGATGTTGGGATCACAAGAAGGGAAAATGGAGGGAGGTGGATGCCATGGGGCCAGATGTaGCACAACACTCTTGCTCAA | + |
|
Preference number: 4 (lower is better) Translates to: HLERDVGITRRENGGRWMPWGQM*HNTLAQ Trigger: TTGAGCAAGAGTGTTGTGGCACATCTGGCCCCATGG...CATCCACCTCCCTCCATTTTCCCTTCTTGTGATCCCAACATCCCTTTCTAGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS-3UTR GCA 90 bp | TTGTTGTCCGTAGTCAGCCAAGTGAAGCAGGGTCAAGAGGTTCTGGGCACACAAAGCCAAACCACGATATaGCCCACGTGTAGCTATCAA | + |
|
Preference number: 4 (lower is better) Translates to: LLSVVSQVKQGQEVLGTQSQTTI*PTCSYQ Trigger: TTGATAGCTACACGTGGGGCATATCGTGGTTTGGCT...TTGTGTGCCCAGAACCTCTTGACCCTGCTTCACTTGGCTGACTACGGACAACAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS-3UTR CCA 90 bp | AGCTTAAAACTACTGAGCAGCAGTGGCTACACCTGCAAGAAGTTATGGAAGCCACTCCTACACCAAAGCTaGCCACGACGAAGAAGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: SLKLLSSSGYTCKKLWKPLLHQS*PRRRRR Trigger: TCTCCTTCTTCGTCGTGGCCAGCTTTGGTGTAGGAG...TGGCTTCCATAACTTCTTGCAGGTGTAGCCACTGCTGCTCAGTAGTTTTAAGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS-3UTR CCA 90 bp | CAGCTCCTACATCTAGAAAGGGATGTTGGGATCACAAGAAGGGAAAATGGAGGGTTATCAGGGATGGGTTaGACACCATATAGTCGCGGT | + |
|
Preference number: 4 (lower is better) Translates to: QLLHLERDVGITRRENGGLSGMG*TPYSRG Trigger: ACCGCGACTATATGGTGTCCAACCCATCCCTGATAA...CCCTCCATTTTCCCTTCTTGTGATCCCAACATCCCTTTCTAGATGTAGGAGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS-3UTR CCA 90 bp | CTTAAAACTACTGAGCAGCAGTGGCTACACCTGCAAGAAGTTATGGAAGCCACAACGTGTAGCTATCAATaGCATGGCCGATGTGCTCGA | + |
|
Preference number: 4 (lower is better) Translates to: LKTTEQQWLHLQEVMEATTCSYQ*HGRCAR Trigger: TCGAGCACATCGGCCATGCCATTGATAGCTACACGT...TGTGGCTTCCATAACTTCTTGCAGGTGTAGCCACTGCTGCTCAGTAGTTTTAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS-3UTR TCA 90 bp | CTTAAAACTACTGAGCAGCAGTGGCTACACCTGCAAGAAGTTATGGAAGCCACAAAACAGGGCCAGGCCTaGCAGCAAAATAATGATGTT | + |
|
Preference number: 4 (lower is better) Translates to: LKTTEQQWLHLQEVMEATKQGQA*QQNNDV Trigger: AACATCATTATTTTGCTGTCAGGCCTGGCCCTGTTT...TGTGGCTTCCATAACTTCTTGCAGGTGTAGCCACTGCTGCTCAGTAGTTTTAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS-3UTR CCA 90 bp | GCGTATAAGAGCTTAAAACTACTGAGCAGCAGTGGCTACACCTGCAAGAAGTTACTTGGTTATCAGGGATaGGTTGGACACCATATAGTC | + |
|
Preference number: 4 (lower is better) Translates to: AYKSLKLLSSSGYTCKKLLGYQG*VGHHIV Trigger: GACTATATGGTGTCCAACCCATCCCTGATAACCAAG...TAACTTCTTGCAGGTGTAGCCACTGCTGCTCAGTAGTTTTAAGCTCTTATACGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS GCA 90 bp | AGCCGCAGAAGATGGCAATCCAGGCGCCAGCGAAGACATCATCCTTaGCTGAGACGCCCATCAGTGGGTACACGCGGTACTGGTCAGCTG | + |
|
Preference number: 5 (lower is better) Translates to: SRRRWQSRRQRRHHP*LRRPSVGTRGTGQL Trigger: CAGCTGACCAGTACCGCGTGTACCCACTGATGGGCGTCTCAGGCAAGGATGATGTCTTCGCTGGCGCCTGGATTGCCATCTTCTGCGGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS-3UTR CAA 90 bp | CAGCAGCGAGGCAGGAGCTTCAGGCCAAGGTGCATCTATGGCCTCCCCTTCCTCTTGATGGGGATGAAGTaGCCTGTCCGACGACAGCAC | + |
|
Preference number: 5 (lower is better) Translates to: QQRGRSFRPRCIYGLPFLLMGMK*PVRRQH Trigger: GTGCTGTCGTCGGACAGGCAACTTCATCCCCATCAA...GAGGAAGGGGAGGCCATAGATGCACCTTGGCCTGAAGCTCCTGCCTCGCTGCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS CCA 90 bp | ACATCATCCTTGCCTGAGACGCCCATCAGTGGGTACACGCGGTACTaGTCAGCTGTTACCCACACTGTCTCCGCAAACAGGGCCAGGCCT | + |
|
Preference number: 5 (lower is better) Translates to: TSSLPETPISGYTRY*SAVTHTVSANRARP Trigger: AGGCCTGGCCCTGTTTGCGGAGACAGTGTGGGTAACAGCTGACCAGTACCGCGTGTACCCACTGATGGGCGTCTCAGGCAAGGATGATGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS-3UTR CAA 90 bp | CAGCAGCGAGGCAGGAGCTTCAGGCCAAGGTGCATCTATGGCCTCCCCTTCCTCCGGCAGCCATCTTCATaGATGGGGATGAAGTTGCCT | + |
|
Preference number: 5 (lower is better) Translates to: QQRGRSFRPRCIYGLPFLRQPSS*MGMKLP Trigger: AGGCAACTTCATCCCCATCAATGAAGATGGCTGCCG...GAGGAAGGGGAGGCCATAGATGCACCTTGGCCTGAAGCTCCTGCCTCGCTGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS TCA 90 bp | GCAGAAGATGGCAATCCAGGCGCCAGCGAAGACATCATCCTTGCCTaGGACGCCCATCAGTGGGTACACGCGGTACTGGTCAGCTGTTAC | + |
|
Preference number: 5 (lower is better) Translates to: AEDGNPGASEDIILA*DAHQWVHAVLVSCY Trigger: GTAACAGCTGACCAGTACCGCGTGTACCCACTGATGGGCGTCTCAGGCAAGGATGATGTCTTCGCTGGCGCCTGGATTGCCATCTTCTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS CCA 90 bp | CTACACCAAAGCTGGCCACGACGAAGAAGGAGAAGCCGCAGAAGATaGCAATCCAGGCGCCAGCGAAGACATCATCCTTGCCTGAGACGC | + |
|
Preference number: 5 (lower is better) Translates to: LHQSWPRRRRRSRRR*QSRRQRRHHPCLRR Trigger: GCGTCTCAGGCAAGGATGATGTCTTCGCTGGCGCCTGGATTGCCATCTTCTGCGGCTTCTCCTTCTTCGTCGTGGCCAGCTTTGGTGTAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS CCA 90 bp | GGATCATGTACCGACGACGACAGAGCGCAGCTCCTACACCAAAGCTaGCCACGACGAAGAAGGAGAAGCCGCAGAAGATGGCAATCCAGG | + |
|
Preference number: 5 (lower is better) Translates to: GSCTDDDRAQLLHQS*PRRRRRSRRRWQSR Trigger: CCTGGATTGCCATCTTCTGCGGCTTCTCCTTCTTCGTCGTGGCCAGCTTTGGTGTAGGAGCTGCGCTCTGTCGTCGTCGGTACATGATCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS-3UTR CAA 90 bp | TCCAAGCATGTGCAGCAGCGAGGCAGGAGCTTCAGGCCAAGGTGCATCTATGGCAGCAAAATAATGATGTaGCCCACGACCAGCAGCCCC | + |
|
Preference number: 5 (lower is better) Translates to: SKHVQQRGRSFRPRCIYGSKIMM*PTTSSP Trigger: GGGGCTGCTGGTCGTGGGCAACATCATTATTTTGCT...GCCATAGATGCACCTTGGCCTGAAGCTCCTGCCTCGCTGCTGCACATGCTTGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS GCA 90 bp | TCACAGGGAGGGTCCACATCAAGATGGCAAAGCCAAACCACGATATaGCCCACGTGTAGCTATCAATGGCATGGCCGATGTGCTCGAAGC | + |
|
Preference number: 5 (lower is better) Translates to: SQGGSTSRWQSQTTI*PTCSYQWHGRCARS Trigger: GCTTCGAGCACATCGGCCATGCCATTGATAGCTACACGTGGGGCATATCGTGGTTTGGCTTTGCCATCTTGATGTGGACCCTCCCTGTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS CCA 90 bp | CCTGGCCCTGGTCAGTGTCTGCACTGTAGTAGGTCAACATTTGCTTaGTTATCAGGGATGGGTTGGACACCATATAGTCGCGGTGGGTGT | + |
|
Preference number: 5 (lower is better) Translates to: PGPGQCLHCSRSTFA*LSGMGWTPYSRGGC Trigger: ACACCCACCGCGACTATATGGTGTCCAACCCATCCCTGATAACCAAGCAAATGTTGACCTACTACAGTGCAGACACTGACCAGGGCCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS-3UTR CAA 90 bp | GTCAGCCAAGTGAAGCAGGGTCAAGAGGTTCTGGGCACACAAATCCAGGCCCAGGTAGTAGGTCAACATTaGCTTGGTTATCAGGGATGG | + |
|
Preference number: 5 (lower is better) Translates to: VSQVKQGQEVLGTQIQAQVVGQH*LGYQGW Trigger: CCATCCCTGATAACCAAGCAAATGTTGACCTACTAC...CTGGGCCTGGATTTGTGTGCCCAGAACCTCTTGACCCTGCTTCACTTGGCTGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS TCA 72 bp | GGCAATCCAGGCGCCAGCGAAGACATCATCCTTGCCTaGGACGCCCATCAGTGGGTACACGCGGTACTGGTC | + |
|
Preference number: 6 (lower is better) Translates to: GNPGASEDIILA*DAHQWVHAVLV Trigger: GACCAGTACCGCGTGTACCCACTGATGGGCGTCTCAGGCAAGGATGATGTCTTCGCTGGCGCCTGGATTGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS TCA 72 bp | CGGGAACACCACTTCCGGGGTGGCTGCCCGGAAGGCTaGTGTGTAATTCACCCAGTCCATGGGGCCAGATGT | + |
|
Preference number: 6 (lower is better) Translates to: REHHFRGGCPEG*CVIHPVHGARC Trigger: ACATCTGGCCCCATGGACTGGGTGAATTACACATCAGCCTTCCGGGCAGCCACCCCGGAAGTGGTGTTCCCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS CAA 72 bp | CCTACTCGGCAGCCATCTTCATTGATGGGGATGAAGTaGCCTGTCCGACGACAGCACAGTGGGGGCCACGGG | + |
|
Preference number: 6 (lower is better) Translates to: PTRQPSSLMGMK*PVRRQHSGGHG Trigger: CCCGTGGCCCCCACTGTGCTGTCGTCGGACAGGCAACTTCATCCCCATCAATGAAGATGGCTGCCGAGTAGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS CCA 72 bp | ACCGACGACGACAGAGCGCAGCTCCTACACCAAAGCTaGCCACGACGAAGAAGGAGAAGCCGCAGAAGATGG | + |
|
Preference number: 6 (lower is better) Translates to: TDDDRAQLLHQS*PRRRRRSRRRW Trigger: CCATCTTCTGCGGCTTCTCCTTCTTCGTCGTGGCCAGCTTTGGTGTAGGAGCTGCGCTCTGTCGTCGTCGGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS CAA 90 bp | AAGCCGCAGAAGATGGCAATCCAGGCGCCAGCGAAGACATCATCCTaGCCTGAGACGCCCATCAGTGGGTACACGCGGTACTGGTCAGCT | + |
|
Preference number: 6 (lower is better) Translates to: KPQKMAIQAPAKTSS*PETPISGYTRYWSA Trigger: AGCTGACCAGTACCGCGTGTACCCACTGATGGGCGTCTCAGGCAAGGATGATGTCTTCGCTGGCGCCTGGATTGCCATCTTCTGCGGCTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS CAA 90 bp | TCCATGTGGCCTACTCGGCAGCCATCTTCATTGATGGGGATGAAGTaGCCTGTCCGACGACAGCACAGTGGGGGCCACGGGAACACCACT | + |
|
Preference number: 6 (lower is better) Translates to: SMWPTRQPSSLMGMK*PVRRQHSGGHGNTT Trigger: AGTGGTGTTCCCGTGGCCCCCACTGTGCTGTCGTCGGACAGGCAACTTCATCCCCATCAATGAAGATGGCTGCCGAGTAGGCCACATGGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS GCA 72 bp | AGATGGCAATCCAGGCGCCAGCGAAGACATCATCCTTaGCTGAGACGCCCATCAGTGGGTACACGCGGTACT | + |
|
Preference number: 6 (lower is better) Translates to: RWQSRRQRRHHP*LRRPSVGTRGT Trigger: AGTACCGCGTGTACCCACTGATGGGCGTCTCAGGCAAGGATGATGTCTTCGCTGGCGCCTGGATTGCCATCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS CCA 72 bp | TTGCCTGAGACGCCCATCAGTGGGTACACGCGGTACTaGTCAGCTGTTACCCACACTGTCTCCGCAAACAGG | + |
|
Preference number: 6 (lower is better) Translates to: LPETPISGYTRY*SAVTHTVSANR Trigger: CCTGTTTGCGGAGACAGTGTGGGTAACAGCTGACCAGTACCGCGTGTACCCACTGATGGGCGTCTCAGGCAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS CCA 72 bp | AGCTGGCCACGACGAAGAAGGAGAAGCCGCAGAAGATaGCAATCCAGGCGCCAGCGAAGACATCATCCTTGC | + |
|
Preference number: 6 (lower is better) Translates to: SWPRRRRRSRRR*QSRRQRRHHPC Trigger: GCAAGGATGATGTCTTCGCTGGCGCCTGGATTGCCATCTTCTGCGGCTTCTCCTTCTTCGTCGTGGCCAGCT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS CAA 72 bp | GCAAACAGGGCCAGGCCTGACAGCAAAATAATGATGTaGCCCACGACCAGCAGCCCCACCACCACAGGAGAC | + |
|
Preference number: 6 (lower is better) Translates to: ANRARPDSKIMM*PTTSSPTTTGD Trigger: GTCTCCTGTGGTGGTGGGGCTGCTGGTCGTGGGCAACATCATTATTTTGCTGTCAGGCCTGGCCCTGTTTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS CAA 72 bp | AAGATGGCAATCCAGGCGCCAGCGAAGACATCATCCTaGCCTGAGACGCCCATCAGTGGGTACACGCGGTAC | + |
|
Preference number: 6 (lower is better) Translates to: KMAIQAPAKTSS*PETPISGYTRY Trigger: GTACCGCGTGTACCCACTGATGGGCGTCTCAGGCAAGGATGATGTCTTCGCTGGCGCCTGGATTGCCATCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS TCA 72 bp | TGTTACCCACACTGTCTCCGCAAACAGGGCCAGGCCTaGCAGCAAAATAATGATGTTGCCCACGACCAGCAG | + |
|
Preference number: 6 (lower is better) Translates to: CYPHCLRKQGQA*QQNNDVAHDQQ Trigger: CTGCTGGTCGTGGGCAACATCATTATTTTGCTGTCAGGCCTGGCCCTGTTTGCGGAGACAGTGTGGGTAACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS CCA 72 bp | CTGCCCGGAAGGCTGATGTGTAATTCACCCAGTCCATaGGGCCAGATGTGCCACAACACTCTTGCTCAATCA | + |
|
Preference number: 6 (lower is better) Translates to: LPGRLMCNSPSP*GQMCHNTLAQS Trigger: TGATTGAGCAAGAGTGTTGTGGCACATCTGGCCCCATGGACTGGGTGAATTACACATCAGCCTTCCGGGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS GCA 72 bp | GGGTCCACATCAAGATGGCAAAGCCAAACCACGATATaGCCCACGTGTAGCTATCAATGGCATGGCCGATGT | + |
|
Preference number: 6 (lower is better) Translates to: GSTSRWQSQTTI*PTCSYQWHGRC Trigger: ACATCGGCCATGCCATTGATAGCTACACGTGGGGCATATCGTGGTTTGGCTTTGCCATCTTGATGTGGACCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS CCA 72 bp | TGGCTATCAACATCACAGGGAGGGTCCACATCAAGATaGCAAAGCCAAACCACGATATGCCCCACGTGTAGC | + |
|
Preference number: 6 (lower is better) Translates to: WLSTSQGGSTSR*QSQTTICPTCS Trigger: GCTACACGTGGGGCATATCGTGGTTTGGCTTTGCCATCTTGATGTGGACCCTCCCTGTGATGTTGATAGCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||
| CDS CCA 72 bp | ACTGTAGTAGGTCAACATTTGCTTGGTTATCAGGGATaGGTTGGACACCATATAGTCGCGGTGGGTGTAGGA | + |
|
Preference number: 6 (lower is better) Translates to: TVVGQHLLGYQG*VGHHIVAVGVG Trigger: TCCTACACCCACCGCGACTATATGGTGTCCAACCCATCCCTGATAACCAAGCAAATGTTGACCTACTACAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006476.6 |
||