Pregenerated sensors for UPF3B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036572Ensembl transcript IDs: ENSMUST00000076265.13, ENSMUST00000130324.2
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CAACAATGCAAAATAGTTAGATCCCAACGAAACTTAGTGTGTTTCTaGTCCACTCAAACGAAGATGCTCCAAGCCAGGATTAAGAGCACC | + |
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Preference number: 1 (lower is better) Translates to: QQCKIVRSQRNLVCF*STQTKMLQARIKST Trigger: GGTGCTCTTAATCCTGGCTTGGAGCATCTTCGTTTGAGTGGAGCAGAAACACACTAAGTTTCGTTGGGATCTAACTATTTTGCATTGTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| 3UTR GCA 90 bp | TGCTCATTGCTCCTACACTACAGAGTCAACAGTCAACACCAACAATaGAAAATAGTTAGATCCCAACGAAACTTAGTGTGTTTCTGCTCC | + |
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Preference number: 1 (lower is better) Translates to: CSLLLHYRVNSQHQQ*KIVRSQRNLVCFCS Trigger: GGAGCAGAAACACACTAAGTTTCGTTGGGATCTAACTATTTTGCATTGTTGGTGTTGACTGTTGACTCTGTAGTGTAGGAGCAATGAGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| 3UTR GCA 90 bp | ATCTTTTCCATCAGCCATAATTTGCTCTATCCTCCGCTCTACTTGTaGTACAATTACATGCTCATTGCTCCTACACTACAGAGTCAACAG | + |
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Preference number: 1 (lower is better) Translates to: IFSISHNLLYPPLYL*YNYMLIAPTLQSQQ Trigger: CTGTTGACTCTGTAGTGTAGGAGCAATGAGCATGTAATTGTAGCACAAGTAGAGCGGAGGATAGAGCAAATTATGGCTGATGGAAAAGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| 3UTR-3UTR GCA 90 bp | CTCCGCTCTACTTGTGCTACAATTACATGCTCATTGCTCCTACACTACAGAGTCTGTTCTCTGTTCCTTTaGCCTGAAGGCACTTCTGGA | + |
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Preference number: 2 (lower is better) Translates to: LRSTCATITCSLLLHYRVCSLFL*PEGTSG Trigger: TCCAGAAGTGCCTTCAGGGCAAAGGAACAGAGAACA...GACTCTGTAGTGTAGGAGCAATGAGCATGTAATTGTAGCACAAGTAGAGCGGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| 3UTR-3UTR TCA 90 bp | CTCCGCTCTACTTGTGCTACAATTACATGCTCATTGCTCCTACACTACAGAGTCATTGTCCTTCGGTTCTaGGCCTGCAATCTTATTCTG | + |
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Preference number: 2 (lower is better) Translates to: LRSTCATITCSLLLHYRVIVLRF*ACNLIL Trigger: CAGAATAAGATTGCAGGCTCAGAACCGAAGGACAAT...GACTCTGTAGTGTAGGAGCAATGAGCATGTAATTGTAGCACAAGTAGAGCGGAG 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| 3UTR-3UTR GCA 90 bp | ATCTTTTCCATCAGCCATAATTTGCTCTATCCTCCGCTCTACTTGTGCTACAATTTGACATTTTTCACTTaGAATGTTCTTGCTACCATC | + |
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Preference number: 2 (lower is better) Translates to: IFSISHNLLYPPLYLCYNLTFFT*NVLATI Trigger: GATGGTAGCAAGAACATTGCAAGTGAAAAATGTCAA...ATTGTAGCACAAGTAGAGCGGAGGATAGAGCAAATTATGGCTGATGGAAAAGAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| 3UTR-3UTR GCA 90 bp | CTATTTAAATCTTTTCCATCAGCCATAATTTGCTCTATCCTCCGCTCTACTTGTAGTCAACACCAACAATaGAAAATAGTTAGATCCCAA | + |
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Preference number: 2 (lower is better) Translates to: LFKSFPSAIICSILRSTCSQHQQ*KIVRSQ Trigger: TTGGGATCTAACTATTTTGCATTGTTGGTGTTGACT...ACAAGTAGAGCGGAGGATAGAGCAAATTATGGCTGATGGAAAAGATTTAAATAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| 3UTR GCA 72 bp | TCCTCCGCTCTACTTGTGCTACAATTACATGCTCATTaGTCCTACACTACAGAGTCAACAGTCAACACCAAC | + |
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Preference number: 3 (lower is better) Translates to: SSALLVLQLHAH*SYTTESTVNTN Trigger: GTTGGTGTTGACTGTTGACTCTGTAGTGTAGGAGCAATGAGCATGTAATTGTAGCACAAGTAGAGCGGAGGA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| 3UTR-3UTR CAA 90 bp | CTCCGCTCTACTTGTGCTACAATTACATGCTCATTGCTCCTACACTACAGAGTCCAGAAAACAATGAAATaGTCCTTCGGTTCTGAGCCT | + |
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Preference number: 3 (lower is better) Translates to: LRSTCATITCSLLLHYRVQKTMK*SFGSEP Trigger: AGGCTCAGAACCGAAGGACAATTTCATTGTTTTCTG...GACTCTGTAGTGTAGGAGCAATGAGCATGTAATTGTAGCACAAGTAGAGCGGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| 3UTR-3UTR CAA 90 bp | GCTCTATCCTCCGCTCTACTTGTGCTACAATTACATGCTCATTGCTCCTACACTTCACTTGCAATGTTCTaGCTACCATCTTTTTCTGAG | + |
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Preference number: 3 (lower is better) Translates to: ALSSALLVLQLHAHCSYTSLAMF*LPSFSE Trigger: CTCAGAAAAAGATGGTAGCAAGAACATTGCAAGTGA...AGTGTAGGAGCAATGAGCATGTAATTGTAGCACAAGTAGAGCGGAGGATAGAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| 3UTR TCA 72 bp | ACGAAGATGCTCCAAGCCAGGATTAAGAGCACCCATTaGTTTTCGAACCTGCTCTTTTTAGCTGTCATACAA | + |
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Preference number: 3 (lower is better) Translates to: TKMLQARIKSTH*FSNLLFLAVIQ Trigger: TTGTATGACAGCTAAAAAGAGCAGGTTCGAAAATCAATGGGTGCTCTTAATCCTGGCTTGGAGCATCTTCGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| 3UTR-3UTR CAA 90 bp | CTGTCATACAAAGTTAAGCCCTTATTTGACATTTTTCACTTGCAATGTTCTTGCCATAATACGTGCTCTTaGGCTGCCTGGACAGTCAGG | + |
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Preference number: 3 (lower is better) Translates to: LSYKVKPLFDIFHLQCSCHNTCS*AAWTVR Trigger: CCTGACTGTCCAGGCAGCCAAAGAGCACGTATTATG...GCAAGAACATTGCAAGTGAAAAATGTCAAATAAGGGCTTAACTTTGTATGACAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| 3UTR GCA 72 bp | AAAATAGTTAGATCCCAACGAAACTTAGTGTGTTTCTaGTCCACTCAAACGAAGATGCTCCAAGCCAGGATT | + |
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Preference number: 3 (lower is better) Translates to: KIVRSQRNLVCF*STQTKMLQARI Trigger: AATCCTGGCTTGGAGCATCTTCGTTTGAGTGGAGCAGAAACACACTAAGTTTCGTTGGGATCTAACTATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| 3UTR GCA 72 bp | CTCCTACACTACAGAGTCAACAGTCAACACCAACAATaGAAAATAGTTAGATCCCAACGAAACTTAGTGTGT | + |
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Preference number: 3 (lower is better) Translates to: LLHYRVNSQHQQ*KIVRSQRNLVC Trigger: ACACACTAAGTTTCGTTGGGATCTAACTATTTTGCATTGTTGGTGTTGACTGTTGACTCTGTAGTGTAGGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS-3UTR GCA 90 bp | CTCCGCTCTACTTGTGCTACAATTACATGCTCATTGCTCCTACACTACAGAGTCCGTTCTTTCTGCTGCTaGCGCCGGCGCTCTTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: LRSTCATITCSLLLHYRVRSFCC*RRRSSS Trigger: AGAAGAAGAGCGCCGGCGGCAGCAGCAGAAAGAACG...GACTCTGTAGTGTAGGAGCAATGAGCATGTAATTGTAGCACAAGTAGAGCGGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS-3UTR TCA 90 bp | ATCTTTTCCATCAGCCATAATTTGCTCTATCCTCCGCTCTACTTGTGCTACAATGGGAATCTCCAGGCTTaGTGCTGTCATCGGCGGGAC | + |
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Preference number: 4 (lower is better) Translates to: IFSISHNLLYPPLYLCYNGNLQA*CCHRRD Trigger: GTCCCGCCGATGACAGCATCAAGCCTGGAGATTCCC...ATTGTAGCACAAGTAGAGCGGAGGATAGAGCAAATTATGGCTGATGGAAAAGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS-3UTR GCA 90 bp | TGCTACAATTACATGCTCATTGCTCCTACACTACAGAGTCAACAGTCAACACCATCCCTGTTGCGATCCTaGCTATCGTCCCCTTTGGCG | + |
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Preference number: 4 (lower is better) Translates to: CYNYMLIAPTLQSQQSTPSLLRS*LSSPLA Trigger: CGCCAAAGGGGACGATAGGCAGGATCGCAACAGGGA...TGGTGTTGACTGTTGACTCTGTAGTGTAGGAGCAATGAGCATGTAATTGTAGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS-3UTR CCA 90 bp | TGTAGTACATCCCACCAGCACAGCGACCCCTTTTCTTGTTCTCTGTTCCTTTGCCCTGAAGCTGTTCCTTaGTCAAAGTGGGAGGTAATC | + |
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Preference number: 4 (lower is better) Translates to: CSTSHQHSDPFSCSLFLCPEAVP*SKWEVI Trigger: GATTACCTCCCACTTTGACCAAGGAACAGCTTCAGG...GCAAAGGAACAGAGAACAAGAAAAGGGGTCGCTGTGCTGGTGGGATGTACTACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS-3UTR CCA 90 bp | TGTAGTACATCCCACCAGCACAGCGACCCCTTTTCTTGTTCTCTGTTCCTTTGCCTGCTTTTTGTCCACTaGGGAATCTCCAGGCTTGAT | + |
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Preference number: 4 (lower is better) Translates to: CSTSHQHSDPFSCSLFLCLLFVH*GISRLD Trigger: ATCAAGCCTGGAGATTCCCCAGTGGACAAAAAGCAG...GCAAAGGAACAGAGAACAAGAAAAGGGGTCGCTGTGCTGGTGGGATGTACTACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS-3UTR CCA 90 bp | TGTAGTACATCCCACCAGCACAGCGACCCCTTTTCTTGTTCTCTGTTCCTTTGCGTCATCGAGCCTCTTTaGCTTTTCATCCTTCAGTTC | + |
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Preference number: 4 (lower is better) Translates to: CSTSHQHSDPFSCSLFLCVIEPL*LFILQF Trigger: GAACTGAAGGATGAAAAGCCAAAGAGGCTCGATGAC...GCAAAGGAACAGAGAACAAGAAAAGGGGTCGCTGTGCTGGTGGGATGTACTACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS-3UTR CCA 90 bp | GCTCTATCCTCCGCTCTACTTGTGCTACAATTACATGCTCATTGCTCCTACACTGTTGGTAAAGCTGCATaGCTGGACGATCCTTGTTCC | + |
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Preference number: 4 (lower is better) Translates to: ALSSALLVLQLHAHCSYTVGKAA*LDDPCS Trigger: GGAACAAGGATCGTCCAGCCATGCAGCTTTACCAAC...AGTGTAGGAGCAATGAGCATGTAATTGTAGCACAAGTAGAGCGGAGGATAGAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS-3UTR GCA 90 bp | ATCTTTTCCATCAGCCATAATTTGCTCTATCCTCCGCTCTACTTGTGCTACAATCGGCGCTCTTCTTCTTaGCGCTTCAGCCTCTCTCTT | + |
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Preference number: 4 (lower is better) Translates to: IFSISHNLLYPPLYLCYNRRSSS*RFSLSL Trigger: AAGAGAGAGGCTGAAGCGGCAAGAAGAAGAGCGCCG...ATTGTAGCACAAGTAGAGCGGAGGATAGAGCAAATTATGGCTGATGGAAAAGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS-3UTR CCA 90 bp | CTCCGCTCTACTTGTGCTACAATTACATGCTCATTGCTCCTACACTACAGAGTCGTAAAGCTGCATGGCTaGACGATCCTTGTTCCTTAT | + |
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Preference number: 4 (lower is better) Translates to: LRSTCATITCSLLLHYRVVKLHG*TILVPY Trigger: ATAAGGAACAAGGATCGTCCAGCCATGCAGCTTTAC...GACTCTGTAGTGTAGGAGCAATGAGCATGTAATTGTAGCACAAGTAGAGCGGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS-3UTR GCA 90 bp | TGTAGTACATCCCACCAGCACAGCGACCCCTTTTCTTGTTCTCTGTTCCTTTGCTTCGAATTACCACCTTaGTCAAAGCTTCTTTCTTGT | + |
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Preference number: 4 (lower is better) Translates to: CSTSHQHSDPFSCSLFLCFELPP*SKLLSC Trigger: ACAAGAAAGAAGCTTTGAGCAAGGTGGTAATTCGAA...GCAAAGGAACAGAGAACAAGAAAAGGGGTCGCTGTGCTGGTGGGATGTACTACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS-3UTR GCA 90 bp | CTATTTAAATCTTTTCCATCAGCCATAATTTGCTCTATCCTCCGCTCTACTTGTCTTTCTTGTCCCTGTTaGGATCCTGCCTATCGTCCC | + |
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Preference number: 4 (lower is better) Translates to: LFKSFPSAIICSILRSTCLSCPC*DPAYRP Trigger: GGGACGATAGGCAGGATCGCAACAGGGACAAGAAAG...ACAAGTAGAGCGGAGGATAGAGCAAATTATGGCTGATGGAAAAGATTTAAATAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS-3UTR CCA 90 bp | TGTAGTACATCCCACCAGCACAGCGACCCCTTTTCTTGTTCTCTGTTCCTTTGCGAGCAACTTAATCTTTaGTTCATCCCTTATTTTCTC | + |
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Preference number: 4 (lower is better) Translates to: CSTSHQHSDPFSCSLFLCEQLNL*FIPYFL Trigger: GAGAAAATAAGGGATGAACCAAAGATTAAGTTGCTC...GCAAAGGAACAGAGAACAAGAAAAGGGGTCGCTGTGCTGGTGGGATGTACTACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS-3UTR CCA 90 bp | GCTCTATCCTCCGCTCTACTTGTGCTACAATTACATGCTCATTGCTCCTACACTTATAACTGTGCCCACTaGCTCTTTCTTCATTCAGAT | + |
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Preference number: 4 (lower is better) Translates to: ALSSALLVLQLHAHCSYTYNCAH*LFLHSD Trigger: ATCTGAATGAAGAAAGAGCCAGTGGGCACAGTTATA...AGTGTAGGAGCAATGAGCATGTAATTGTAGCACAAGTAGAGCGGAGGATAGAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| 3UTR CAA 72 bp | TCCATCAGCCATAATTTGCTCTATCCTCCGCTCTACTaGTGCTACAATTACATGCTCATTGCTCCTACACTA | + |
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Preference number: 4 (lower is better) Translates to: SISHNLLYPPLY*CYNYMLIAPTL Trigger: TAGTGTAGGAGCAATGAGCATGTAATTGTAGCACAAGTAGAGCGGAGGATAGAGCAAATTATGGCTGATGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS-3UTR TCA 90 bp | CTCCGCTCTACTTGTGCTACAATTACATGCTCATTGCTCCTACACTACAGAGTCCATCAAATCGGTCCCTaGATAAAAGAATGTCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: LRSTCATITCSLLLHYRVHQIGP*IKECLL Trigger: AAGAAGACATTCTTTTATTCAGGGACCGATTTGATG...GACTCTGTAGTGTAGGAGCAATGAGCATGTAATTGTAGCACAAGTAGAGCGGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS-3UTR GCA 90 bp | CTATTTAAATCTTTTCCATCAGCCATAATTTGCTCTATCCTCCGCTCTACTTGTCTAATACCACTTTCCTaGTTTTTGTCCACTGGGGAA | + |
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Preference number: 4 (lower is better) Translates to: LFKSFPSAIICSILRSTCLIPLS*FLSTGE Trigger: TTCCCCAGTGGACAAAAAGCAGGAAAGTGGTATTAG...ACAAGTAGAGCGGAGGATAGAGCAAATTATGGCTGATGGAAAAGATTTAAATAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS-3UTR CCA 90 bp | TGCTACAATTACATGCTCATTGCTCCTACACTACAGAGTCAACAGTCAACACCATTAATTCTCGATTTTTaGCTTCAATTTCCTCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: CYNYMLIAPTLQSQQSTPLILDF*LQFPPA Trigger: TGCTGGAGGAAATTGAAGCCAAAAATCGAGAATTAA...TGGTGTTGACTGTTGACTCTGTAGTGTAGGAGCAATGAGCATGTAATTGTAGCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS-3UTR GCA 90 bp | CTATTTAAATCTTTTCCATCAGCCATAATTTGCTCTATCCTCCGCTCTACTTGTTCTTCTCTCATTCTTTaGTTGTTCTTCAGGAAGCTC | + |
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Preference number: 4 (lower is better) Translates to: LFKSFPSAIICSILRSTCSSLIL*LFFRKL Trigger: GAGCTTCCTGAAGAACAAGCAAAGAATGAGAGAAGA...ACAAGTAGAGCGGAGGATAGAGCAAATTATGGCTGATGGAAAAGATTTAAATAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS-3UTR CCA 90 bp | CTGTCATACAAAGTTAAGCCCTTATTTGACATTTTTCACTTGCAATGTTCTTGCCTCCAGCAATGTCTCTaGAGTAGATGTCATTTTCTC | + |
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Preference number: 4 (lower is better) Translates to: LSYKVKPLFDIFHLQCSCLQQCL*SRCHFL Trigger: GAGAAAATGACATCTACTCCAGAGACATTGCTGGAG...GCAAGAACATTGCAAGTGAAAAATGTCAAATAAGGGCTTAACTTTGTATGACAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| 3UTR CAA 72 bp | AAAATTAACTTGTGGAAACTGCAGAAAACAATGAAATaGTCCTTCGGTTCTGAGCCTGCAATCTTATTCTGC | + |
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Preference number: 4 (lower is better) Translates to: KINLWKLQKTMK*SFGSEPAILFC Trigger: GCAGAATAAGATTGCAGGCTCAGAACCGAAGGACAATTTCATTGTTTTCTGCAGTTTCCACAAGTTAATTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS-3UTR CCA 90 bp | CTGTCATACAAAGTTAAGCCCTTATTTGACATTTTTCACTTGCAATGTTCTTGCGTTCCTTGGTCAAAGTaGGAGGTAATCTTCGAATTA | + |
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Preference number: 4 (lower is better) Translates to: LSYKVKPLFDIFHLQCSCVPWSK*EVIFEL Trigger: TAATTCGAAGATTACCTCCCACTTTGACCAAGGAAC...GCAAGAACATTGCAAGTGAAAAATGTCAAATAAGGGCTTAACTTTGTATGACAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS-3UTR CCA 90 bp | CTGTCATACAAAGTTAAGCCCTTATTTGACATTTTTCACTTGCAATGTTCTTGCAAATTTTCTGTATTCTaGATCATCCTCGATAGTCCC | + |
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Preference number: 4 (lower is better) Translates to: LSYKVKPLFDIFHLQCSCKFSVF*IILDSP Trigger: GGGACTATCGAGGATGATCCAGAATACAGAAAATTT...GCAAGAACATTGCAAGTGAAAAATGTCAAATAAGGGCTTAACTTTGTATGACAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS-3UTR CCA 90 bp | CTGTCATACAAAGTTAAGCCCTTATTTGACATTTTTCACTTGCAATGTTCTTGCCTTTGTCCAGTCTCTTaGTTTTGTCTCTTTTATCAA | + |
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Preference number: 4 (lower is better) Translates to: LSYKVKPLFDIFHLQCSCLCPVS*FCLFYQ Trigger: TTGATAAAAGAGACAAAACCAAGAGACTGGACAAAG...GCAAGAACATTGCAAGTGAAAAATGTCAAATAAGGGCTTAACTTTGTATGACAG 34% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS GCA 90 bp | ATTACCACCTTGCTCAAAGCTTCTTTCTTGTCCCTGTTGCGATCCTaGCTATCGTCCCCTTTGGCGCCTTCGGCAGTAGCGCCAATACAG | + |
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Preference number: 5 (lower is better) Translates to: ITTLLKASFLSLLRS*LSSPLAPSAVAPIQ Trigger: CTGTATTGGCGCTACTGCCGAAGGCGCCAAAGGGGACGATAGGCAGGATCGCAACAGGGACAAGAAAGAAGCTTTGAGCAAGGTGGTAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS-3UTR CAA 90 bp | TGTAGTACATCCCACCAGCACAGCGACCCCTTTTCTTGTTCTCTGTTCCTTTGCTCTTTCTTGTCCCTGTaGCGATCCTGCCTATCGTCC | + |
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Preference number: 5 (lower is better) Translates to: CSTSHQHSDPFSCSLFLCSFLSL*RSCLSS Trigger: GGACGATAGGCAGGATCGCAACAGGGACAAGAAAGA...GCAAAGGAACAGAGAACAAGAAAAGGGGTCGCTGTGCTGGTGGGATGTACTACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS-3UTR CAA 90 bp | TGTAGTACATCCCACCAGCACAGCGACCCCTTTTCTTGTTCTCTGTTCCTTTGCGTGCTCAGGCATAGGTaGAAGATGTTCCTGAAGCTG | + |
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Preference number: 5 (lower is better) Translates to: CSTSHQHSDPFSCSLFLCVLRHR*KMFLKL Trigger: CAGCTTCAGGAACATCTTCAACCTATGCCTGAGCAC...GCAAAGGAACAGAGAACAAGAAAAGGGGTCGCTGTGCTGGTGGGATGTACTACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS-3UTR CAA 90 bp | TGCTACAATTACATGCTCATTGCTCCTACACTACAGAGTCAACAGTCAACACCACCGGCGCTCTTCTTCTaGCCGCTTCAGCCTCTCTCT | + |
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Preference number: 5 (lower is better) Translates to: CYNYMLIAPTLQSQQSTPPALFF*PLQPLS Trigger: AGAGAGAGGCTGAAGCGGCAAGAAGAAGAGCGCCGG...TGGTGTTGACTGTTGACTCTGTAGTGTAGGAGCAATGAGCATGTAATTGTAGCA 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS CCA 90 bp | CGAGCCTCTTTGGCTTTTCATCCTTCAGTTCGACATCAGAACGCCTaGGCAGAGTATAACTGTGCCCACTGGCTCTTTCTTCATTCAGAT | + |
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Preference number: 5 (lower is better) Translates to: RASLAFHPSVRHQNA*AEYNCAHWLFLHSD Trigger: ATCTGAATGAAGAAAGAGCCAGTGGGCACAGTTATACTCTGCCCAGGCGTTCTGATGTCGAACTGAAGGATGAAAAGCCAAAGAGGCTCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076265.13 ENSMUST00000130324.2 |
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| CDS-3UTR CAA 90 bp | GCTCTATCCTCCGCTCTACTTGTGCTACAATTACATGCTCATTGCTCCTACACTCTCAAAGCTTCTTTCTaGTCCCTGTTGCGATCCTGC | + |
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Preference number: 5 (lower is better) Translates to: ALSSALLVLQLHAHCSYTLKASF*SLLRSC Trigger: GCAGGATCGCAACAGGGACAAGAAAGAAGCTTTGAG...AGTGTAGGAGCAATGAGCATGTAATTGTAGCACAAGTAGAGCGGAGGATAGAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS-3UTR CAA 90 bp | TGTAGTACATCCCACCAGCACAGCGACCCCTTTTCTTGTTCTCTGTTCCTTTGCTTCTTCTCTCATTCTTaGCTTGTTCTTCAGGAAGCT | + |
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Preference number: 5 (lower is better) Translates to: CSTSHQHSDPFSCSLFLCFFSHS*LVLQEA Trigger: AGCTTCCTGAAGAACAAGCAAAGAATGAGAGAAGAA...GCAAAGGAACAGAGAACAAGAAAAGGGGTCGCTGTGCTGGTGGGATGTACTACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS-3UTR CAA 90 bp | GCTCTATCCTCCGCTCTACTTGTGCTACAATTACATGCTCATTGCTCCTACACTTCTCTCATTCTTTGCTaGTTCTTCAGGAAGCTCAAA | + |
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Preference number: 5 (lower is better) Translates to: ALSSALLVLQLHAHCSYTSLILC*FFRKLK Trigger: TTTGAGCTTCCTGAAGAACAAGCAAAGAATGAGAGA...AGTGTAGGAGCAATGAGCATGTAATTGTAGCACAAGTAGAGCGGAGGATAGAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS-3UTR CAA 90 bp | ATCTTTTCCATCAGCCATAATTTGCTCTATCCTCCGCTCTACTTGTGCTACAATCTTCGAATTACCACCTaGCTCAAAGCTTCTTTCTTG | + |
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Preference number: 5 (lower is better) Translates to: IFSISHNLLYPPLYLCYNLRITT*LKASFL Trigger: CAAGAAAGAAGCTTTGAGCAAGGTGGTAATTCGAAG...ATTGTAGCACAAGTAGAGCGGAGGATAGAGCAAATTATGGCTGATGGAAAAGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS-3UTR CAA 90 bp | CTATTTAAATCTTTTCCATCAGCCATAATTTGCTCTATCCTCCGCTCTACTTGTCGTCATCGAGCCTCTTaGGCTTTTCATCCTTCAGTT | + |
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Preference number: 5 (lower is better) Translates to: LFKSFPSAIICSILRSTCRHRAS*AFHPSV Trigger: AACTGAAGGATGAAAAGCCAAAGAGGCTCGATGACG...ACAAGTAGAGCGGAGGATAGAGCAAATTATGGCTGATGGAAAAGATTTAAATAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS-3UTR CAA 90 bp | CTGTCATACAAAGTTAAGCCCTTATTTGACATTTTTCACTTGCAATGTTCTTGCATTAATTCTCGATTTTaGGCTTCAATTTCCTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: LSYKVKPLFDIFHLQCSCINSRF*ASISSS Trigger: GCTGGAGGAAATTGAAGCCAAAAATCGAGAATTAAT...GCAAGAACATTGCAAGTGAAAAATGTCAAATAAGGGCTTAACTTTGTATGACAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS-3UTR CAA 90 bp | CTGTCATACAAAGTTAAGCCCTTATTTGACATTTTTCACTTGCAATGTTCTTGCTCCAGTCTCTTGGTTTaGTCTCTTTTATCAAGTTCT | + |
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Preference number: 5 (lower is better) Translates to: LSYKVKPLFDIFHLQCSCSSLLV*SLLSSS Trigger: AGAACTTGATAAAAGAGACAAAACCAAGAGACTGGA...GCAAGAACATTGCAAGTGAAAAATGTCAAATAAGGGCTTAACTTTGTATGACAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS-3UTR CAA 90 bp | CTGTCATACAAAGTTAAGCCCTTATTTGACATTTTTCACTTGCAATGTTCTTGCTCATTCAGATTTTCTTaGTCCAGTCTCTTGGTTTTG | + |
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Preference number: 5 (lower is better) Translates to: LSYKVKPLFDIFHLQCSCSFRFS*SSLLVL Trigger: CAAAACCAAGAGACTGGACAAAGAAAATCTGAATGA...GCAAGAACATTGCAAGTGAAAAATGTCAAATAAGGGCTTAACTTTGTATGACAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS GCA 72 bp | TCGGCAGTAGCGCCAATACAGCCGCCTGTGGCGCCCTaGGGCGTAAACAGGGTCACTCGTTTCTCCTTAGGC | + |
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Preference number: 6 (lower is better) Translates to: SAVAPIQPPVAP*GVNRVTRFSLG Trigger: GCCTAAGGAGAAACGAGTGACCCTGTTTACGCCGCAGGGCGCCACAGGCGGCTGTATTGGCGCTACTGCCGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS CAA 90 bp | AAAGCTTCTTTCTTGTCCCTGTTGCGATCCTGCCTATCGTCCCCTTaGGCGCCTTCGGCAGTAGCGCCAATACAGCCGCCTGTGGCGCCC | + |
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Preference number: 6 (lower is better) Translates to: KASFLSLLRSCLSSP*APSAVAPIQPPVAP Trigger: GGGCGCCACAGGCGGCTGTATTGGCGCTACTGCCGAAGGCGCCAAAGGGGACGATAGGCAGGATCGCAACAGGGACAAGAAAGAAGCTTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS CAA 72 bp | TTCTTGTCCCTGTTGCGATCCTGCCTATCGTCCCCTTaGGCGCCTTCGGCAGTAGCGCCAATACAGCCGCCT | + |
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Preference number: 6 (lower is better) Translates to: FLSLLRSCLSSP*APSAVAPIQPP Trigger: AGGCGGCTGTATTGGCGCTACTGCCGAAGGCGCCAAAGGGGACGATAGGCAGGATCGCAACAGGGACAAGAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS GCA 72 bp | TTGCTCAAAGCTTCTTTCTTGTCCCTGTTGCGATCCTaGCTATCGTCCCCTTTGGCGCCTTCGGCAGTAGCG | + |
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Preference number: 6 (lower is better) Translates to: LLKASFLSLLRS*LSSPLAPSAVA Trigger: CGCTACTGCCGAAGGCGCCAAAGGGGACGATAGGCAGGATCGCAACAGGGACAAGAAAGAAGCTTTGAGCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS GCA 72 bp | CTTCTTGCCGCTTCAGCCTCTCTCTTTCTCGGATCATaGGCTCCTGATCTCTCTCATAGTCCCGGTCCCTGT | + |
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Preference number: 6 (lower is better) Translates to: LLAASASLFLGS*APDLSHSPGPC Trigger: ACAGGGACCGGGACTATGAGAGAGATCAGGAGCGCATGATCCGAGAAAGAGAGAGGCTGAAGCGGCAAGAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076265.13 ENSMUST00000130324.2 |
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| CDS CAA 72 bp | ATTACCACCTTGCTCAAAGCTTCTTTCTTGTCCCTGTaGCGATCCTGCCTATCGTCCCCTTTGGCGCCTTCG | + |
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Preference number: 6 (lower is better) Translates to: ITTLLKASFLSL*RSCLSSPLAPS Trigger: CGAAGGCGCCAAAGGGGACGATAGGCAGGATCGCAACAGGGACAAGAAAGAAGCTTTGAGCAAGGTGGTAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS CAA 90 bp | AATCTTCGAATTACCACCTTGCTCAAAGCTTCTTTCTTGTCCCTGTaGCGATCCTGCCTATCGTCCCCTTTGGCGCCTTCGGCAGTAGCG | + |
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Preference number: 6 (lower is better) Translates to: NLRITTLLKASFLSL*RSCLSSPLAPSAVA Trigger: CGCTACTGCCGAAGGCGCCAAAGGGGACGATAGGCAGGATCGCAACAGGGACAAGAAAGAAGCTTTGAGCAAGGTGGTAATTCGAAGATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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| CDS CCA 72 bp | TTGGCTTTTCATCCTTCAGTTCGACATCAGAACGCCTaGGCAGAGTATAACTGTGCCCACTGGCTCTTTCTT | + |
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Preference number: 6 (lower is better) Translates to: LAFHPSVRHQNA*AEYNCAHWLFL Trigger: AAGAAAGAGCCAGTGGGCACAGTTATACTCTGCCCAGGCGTTCTGATGTCGAACTGAAGGATGAAAAGCCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076265.13 ENSMUST00000130324.2 |
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| CDS CCA 72 bp | TCTGTAATCTCTGACACCCTCGTCATCGAGCCTCTTTaGCTTTTCATCCTTCAGTTCGACATCAGAACGCCT | + |
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Preference number: 6 (lower is better) Translates to: SVISDTLVIEPL*LFILQFDIRTP Trigger: AGGCGTTCTGATGTCGAACTGAAGGATGAAAAGCCAAAGAGGCTCGATGACGAGGGTGTCAGAGATTACAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076265.13 ENSMUST00000130324.2 |
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| CDS CAA 72 bp | AATCTTCGAATTACCACCTTGCTCAAAGCTTCTTTCTaGTCCCTGTTGCGATCCTGCCTATCGTCCCCTTTG | + |
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Preference number: 6 (lower is better) Translates to: NLRITTLLKASF*SLLRSCLSSPL Trigger: CAAAGGGGACGATAGGCAGGATCGCAACAGGGACAAGAAAGAAGCTTTGAGCAAGGTGGTAATTCGAAGATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076265.13 |
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