Pregenerated sensors for UPF3A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038398Ensembl transcript IDs: ENSMUST00000043767.9
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATTGAACTCAGGACCTCAGGAAGAGCAGTCAGTGCTCTTAACCACTaGGCCACCTCTCCAGCACCTTCCCTTGTGATCTTAAGGCTGCAT | + |
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Preference number: 1 (lower is better) Translates to: IELRTSGRAVSALNH*ATSPAPSLVILRLH Trigger: ATGCAGCCTTAAGATCACAAGGGAAGGTGCTGGAGAGGTGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCTGAGGTCCTGAGTTCAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| 3UTR CCA 90 bp | AGATTGTTCTTATCTAGCTTTGCAAGGATTTCTACCCGGGGAACATaGCTGTGTGGCTGCAGAGCACATCAACAGGGACGATGGCCCATG | + |
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Preference number: 1 (lower is better) Translates to: RLFLSSFARISTRGT*LCGCRAHQQGRWPM Trigger: CATGGGCCATCGTCCCTGTTGATGTGCTCTGCAGCCACACAGCCATGTTCCCCGGGTAGAAATCCTTGCAAAGCTAGATAAGAACAATCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| 3UTR-3UTR GCA 90 bp | ATTACAGATGGTTGTGAGCCACCATGTGGTAGCTGGGAATTGAACTCAGGACCTACATGGCTGTGTGGCTaGAGAGCACATCAACAGGGA | + |
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Preference number: 2 (lower is better) Translates to: ITDGCEPPCGSWELNSGPTWLCG*RAHQQG Trigger: TCCCTGTTGATGTGCTCTGCAGCCACACAGCCATGT...AGGTCCTGAGTTCAATTCCCAGCTACCACATGGTGGCTCACAACCATCTGTAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| 3UTR-3UTR CCA 90 bp | CCAGCACCTTCCCTTGTGATCTTAAGGCTGCATTTTACAATATTCATCTCCAGTTCTACCCGGGGAACATaGCTGTGTGGCTGCAGAGCA | + |
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Preference number: 2 (lower is better) Translates to: PAPSLVILRLHFTIFISSSTRGT*LCGCRA Trigger: TGCTCTGCAGCCACACAGCCATGTTCCCCGGGTAGA...ACTGGAGATGAATATTGTAAAATGCAGCCTTAAGATCACAAGGGAAGGTGCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| 3UTR-3UTR TCA 90 bp | GATGGTTGTGAGCCACCATGTGGTAGCTGGGAATTGAACTCAGGACCTCAGGAATTCATCTCCAGTAAATaGCTTCTGCCAACCAGTTTT | + |
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Preference number: 2 (lower is better) Translates to: DGCEPPCGSWELNSGPQEFISSK*LLPTSF Trigger: AAAACTGGTTGGCAGAAGTCATTTACTGGAGATGAA...TTCCTGAGGTCCTGAGTTCAATTCCCAGCTACCACATGGTGGCTCACAACCATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| 3UTR CCA 72 bp | CTTTGCAAGGATTTCTACCCGGGGAACATGGCTGTGTaGCTGCAGAGCACATCAACAGGGACGATGGCCCAT | + |
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Preference number: 3 (lower is better) Translates to: LCKDFYPGNMAV*LQSTSTGTMAH Trigger: ATGGGCCATCGTCCCTGTTGATGTGCTCTGCAGCCACACAGCCATGTTCCCCGGGTAGAAATCCTTGCAAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| 3UTR TCA 72 bp | AGGACCTCAGGAAGAGCAGTCAGTGCTCTTAACCACTaGGCCACCTCTCCAGCACCTTCCCTTGTGATCTTA | + |
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Preference number: 3 (lower is better) Translates to: RTSGRAVSALNH*ATSPAPSLVIL Trigger: TAAGATCACAAGGGAAGGTGCTGGAGAGGTGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCTGAGGTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| 3UTR CCA 72 bp | TTATCTAGCTTTGCAAGGATTTCTACCCGGGGAACATaGCTGTGTGGCTGCAGAGCACATCAACAGGGACGA | + |
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Preference number: 3 (lower is better) Translates to: LSSFARISTRGT*LCGCRAHQQGR Trigger: TCGTCCCTGTTGATGTGCTCTGCAGCCACACAGCCATGTTCCCCGGGTAGAAATCCTTGCAAAGCTAGATAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| 3UTR-3UTR CAA 90 bp | ATTACAGATGGTTGTGAGCCACCATGTGGTAGCTGGGAATTGAACTCAGGACCTTGTTCTTATCTAGCTTaGCAAGGATTTCTACCCGGG | + |
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Preference number: 3 (lower is better) Translates to: ITDGCEPPCGSWELNSGPCSYLA*QGFLPG Trigger: CCCGGGTAGAAATCCTTGCAAAGCTAGATAAGAACA...AGGTCCTGAGTTCAATTCCCAGCTACCACATGGTGGCTCACAACCATCTGTAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| 3UTR TCA 72 bp | CCAGATGAGCAAGAACACTCTAGAAGGTATGGACTTTaGAATTCAGCCCACATGGGAAGACATAGACAGAGT | + |
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Preference number: 3 (lower is better) Translates to: PDEQEHSRRYGL*NSAHMGRHRQS Trigger: ACTCTGTCTATGTCTTCCCATGTGGGCTGAATTTCAAAGTCCATACCTTCTAGAGTGTTCTTGCTCATCTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS-3UTR CCA 90 bp | TTTGCAAGGATTTCTACCCGGGGAACATGGCTGTGTGGCTGCAGAGCACATCAACTCCCCAGCTGTCTCTaGCTGGCTCGCTACCAGCCG | + |
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Preference number: 4 (lower is better) Translates to: FARISTRGTWLCGCRAHQLPSCL*LARYQP Trigger: CGGCTGGTAGCGAGCCAGCCAGAGACAGCTGGGGAG...TTGATGTGCTCTGCAGCCACACAGCCATGTTCCCCGGGTAGAAATCCTTGCAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS-3UTR TCA 90 bp | GGATTTCTACCCGGGGAACATGGCTGTGTGGCTGCAGAGCACATCAACAGGGACCTGGCAAACTCTGAGTaGCTGCTGTGCTTCCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: GFLPGEHGCVAAEHINRDLANSE*LLCFLQ Trigger: CTGCAGGAAGCACAGCAGTCACTCAGAGTTTGCCAG...GTCCCTGTTGATGTGCTCTGCAGCCACACAGCCATGTTCCCCGGGTAGAAATCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS-3UTR CCA 90 bp | GGGGAACATGGCTGTGTGGCTGCAGAGCACATCAACAGGGACGATGGCCCATGGCGTCTTCATTCCTTCTaGAGAACCTGGCAAACTCTG | + |
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Preference number: 4 (lower is better) Translates to: GEHGCVAAEHINRDDGPWRLHSF*RTWQTL Trigger: CAGAGTTTGCCAGGTTCTCCAGAAGGAATGAAGACG...CCATGGGCCATCGTCCCTGTTGATGTGCTCTGCAGCCACACAGCCATGTTCCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS-3UTR CCA 90 bp | GATGGTTGTGAGCCACCATGTGGTAGCTGGGAATTGAACTCAGGACCTCAGGAATCTCTGCCACGTCCATaGGGACACTGCCATCCTGGC | + |
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Preference number: 4 (lower is better) Translates to: DGCEPPCGSWELNSGPQESLPRP*GHCHPG Trigger: GCCAGGATGGCAGTGTCCCCATGGACGTGGCAGAGA...TTCCTGAGGTCCTGAGTTCAATTCCCAGCTACCACATGGTGGCTCACAACCATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS-3UTR CCA 90 bp | GCAGATTGTTCTTATCTAGCTTTGCAAGGATTTCTACCCGGGGAACATGGCTGTCCAGCTGTCTCTGGCTaGCTCGCTACCAGCCGGTCT | + |
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Preference number: 4 (lower is better) Translates to: ADCSYLALQGFLPGEHGCPAVSG*LATSRS Trigger: AGACCGGCTGGTAGCGAGCCAGCCAGAGACAGCTGG...ACAGCCATGTTCCCCGGGTAGAAATCCTTGCAAAGCTAGATAAGAACAATCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS-3UTR CCA 90 bp | GGGGAACATGGCTGTGTGGCTGCAGAGCACATCAACAGGGACGATGGCCCATGGAGATCTCTTGTCCCTTaGCTCTTTATCACTGGTATC | + |
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Preference number: 4 (lower is better) Translates to: GEHGCVAAEHINRDDGPWRSLVP*LFITGI Trigger: GATACCAGTGATAAAGAGCCAAGGGACAAGAGATCT...CCATGGGCCATCGTCCCTGTTGATGTGCTCTGCAGCCACACAGCCATGTTCCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS-3UTR CCA 90 bp | GGCAGGCAGATTTCTGAGTTCAAGGGCCAGCCTGGTCTACAAAATGAGTTCCAGGGAGCTCTCTCGTCTTaGCTTCTATCTCTCCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: GRQISEFKGQPGLQNEFQGALSS*LLSLPA Trigger: TGCTGGGAGAGATAGAAGCCAAGACGAGAGAGCTCC...CTGGAACTCATTTTGTAGACCAGGCTGGCCCTTGAACTCAGAAATCTGCCTGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS-3UTR CCA 90 bp | CAAAATGAGTTCCAGGACAGCCCGGGCTACACAGAGAAACCCTGTCTCGAAAAACAGGCGATCCTTTCTTaGCCCCAGGCTGTCATACTC | + |
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Preference number: 4 (lower is better) Translates to: QNEFQDSPGYTEKPCLEKQAILS*PQAVIL Trigger: GAGTATGACAGCCTGGGGCCAAGAAAGGATCGCCTG...TTTTTCGAGACAGGGTTTCTCTGTGTAGCCCGGGCTGTCCTGGAACTCATTTTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS-3UTR GCA 90 bp | GATGGTTGTGAGCCACCATGTGGTAGCTGGGAATTGAACTCAGGACCTCAGGAACAAACTCTGAGTGACTaGTGTGCTTCCTGCAGGTGT | + |
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Preference number: 4 (lower is better) Translates to: DGCEPPCGSWELNSGPQEQTLSD*CASCRC Trigger: ACACCTGCAGGAAGCACAGCAGTCACTCAGAGTTTG...TTCCTGAGGTCCTGAGTTCAATTCCCAGCTACCACATGGTGGCTCACAACCATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS-3UTR CCA 90 bp | GATGGTTGTGAGCCACCATGTGGTAGCTGGGAATTGAACTCAGGACCTCAGGAATCCTTCTGGAGAACCTaGCAAACTCTGAGTGACTGC | + |
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Preference number: 4 (lower is better) Translates to: DGCEPPCGSWELNSGPQESFWRT*QTLSDC Trigger: GCAGTCACTCAGAGTTTGCCAGGTTCTCCAGAAGGA...TTCCTGAGGTCCTGAGTTCAATTCCCAGCTACCACATGGTGGCTCACAACCATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS-3UTR GCA 90 bp | ACTCTAGAAGGTATGGACTTTGAAATTCAGCCCACATGGGAAGACATAGACAGAGCCGGAGGACCACCTTaGTCAGGGCTGTCCTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: TLEGMDFEIQPTWEDIDRAGGPP*SGLSSS Trigger: AGAAGAGGACAGCCCTGAGCAAGGTGGTCCTCCGGC...TCTGTCTATGTCTTCCCATGTGGGCTGAATTTCAAAGTCCATACCTTCTAGAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS-3UTR CCA 90 bp | GATGGTTGTGAGCCACCATGTGGTAGCTGGGAATTGAACTCAGGACCTCAGGAATTGGCTCTTTATCACTaGTATCCTGTAGCCTCTCCC | + |
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Preference number: 4 (lower is better) Translates to: DGCEPPCGSWELNSGPQELALYH*YPVASP Trigger: GGGAGAGGCTACAGGATACCAGTGATAAAGAGCCAA...TTCCTGAGGTCCTGAGTTCAATTCCCAGCTACCACATGGTGGCTCACAACCATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS-3UTR CCA 90 bp | ACTCTAGAAGGTATGGACTTTGAAATTCAGCCCACATGGGAAGACATAGACAGAGGGACACTGCCATCCTaGCCCTTCTTCCCTCTGTCC | + |
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Preference number: 4 (lower is better) Translates to: TLEGMDFEIQPTWEDIDRGTLPS*PFFPLS Trigger: GGACAGAGGGAAGAAGGGCCAGGATGGCAGTGTCCC...TCTGTCTATGTCTTCCCATGTGGGCTGAATTTCAAAGTCCATACCTTCTAGAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS-3UTR TCA 90 bp | GCAGATTGTTCTTATCTAGCTTTGCAAGGATTTCTACCCGGGGAACATGGCTGTGAACCTGGCAAACTCTaGGTGACTGCTGTGCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: ADCSYLALQGFLPGEHGCEPGKL*VTAVLP Trigger: AGGAAGCACAGCAGTCACTCAGAGTTTGCCAGGTTC...ACAGCCATGTTCCCCGGGTAGAAATCCTTGCAAAGCTAGATAAGAACAATCTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS-3UTR GCA 90 bp | CAAAATGAGTTCCAGGACAGCCCGGGCTACACAGAGAAACCCTGTCTCGAAAAACTGGGTCATCTTCAATaGTTCCGGTCTTGGCATCTT | + |
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Preference number: 4 (lower is better) Translates to: QNEFQDSPGYTEKPCLEKLGHLQ*FRSWHL Trigger: AAGATGCCAAGACCGGAAGCATTGAAGATGACCCAG...TTTTTCGAGACAGGGTTTCTCTGTGTAGCCCGGGCTGTCCTGGAACTCATTTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS-3UTR CCA 90 bp | GCAGATTGTTCTTATCTAGCTTTGCAAGGATTTCTACCCGGGGAACATGGCTGTCTTTGGGTTTCTCTGTaGCCACTTCCTCTCCCGTTT | + |
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Preference number: 4 (lower is better) Translates to: ADCSYLALQGFLPGEHGCLWVSL*PLPLPF Trigger: AAACGGGAGAGGAAGTGGCCACAGAGAAACCCAAAG...ACAGCCATGTTCCCCGGGTAGAAATCCTTGCAAAGCTAGATAAGAACAATCTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| 3UTR CAA 72 bp | ACCTACGAACACAAGGCAGATTGTTCTTATCTAGCTTaGCAAGGATTTCTACCCGGGGAACATGGCTGTGTG | + |
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Preference number: 4 (lower is better) Translates to: TYEHKADCSYLA*QGFLPGEHGCV Trigger: CACACAGCCATGTTCCCCGGGTAGAAATCCTTGCAAAGCTAGATAAGAACAATCTGCCTTGTGTTCGTAGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS-3UTR CCA 90 bp | GATGGTTGTGAGCCACCATGTGGTAGCTGGGAATTGAACTCAGGACCTCAGGAAGAACTGTTTATATTCTaGGTCATCTTCAATGCTTCC | + |
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Preference number: 4 (lower is better) Translates to: DGCEPPCGSWELNSGPQEELFIF*VIFNAS Trigger: GGAAGCATTGAAGATGACCCAGAATATAAACAGTTC...TTCCTGAGGTCCTGAGTTCAATTCCCAGCTACCACATGGTGGCTCACAACCATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS-3UTR TCA 90 bp | CAGAGTACAACTCTAGACCTACGAACACAAGGCAGATTGTTCTTATCTAGCTTTGGCCTTTATTGCCAATaGAGATATAGCCGTCAAAAC | + |
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Preference number: 4 (lower is better) Translates to: QSTTLDLRTQGRLFLSSFGLYCQ*RYSRQN Trigger: GTTTTGACGGCTATATCTTCATTGGCAATAAAGGCC...AAAGCTAGATAAGAACAATCTGCCTTGTGTTCGTAGGTCTAGAGTTGTACTCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS CCA 90 bp | GCCGGAGGCGCCGCCGACTCCTTCCGCGGTGACTCGCGGCGGCAGTaGGTCTCTGAGCTCGATAGTTTCTCCCTCCAGCTCGGGCCCCGC | + |
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Preference number: 5 (lower is better) Translates to: AGGAADSFRGDSRRQ*VSELDSFSLQLGPR Trigger: GCGGGGCCCGAGCTGGAGGGAGAAACTATCGAGCTCAGAGACCCACTGCCGCCGCGAGTCACCGCGGAAGGAGTCGGCGGCGCCTCCGGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS CCA 90 bp | TCTTTATCACTGGTATCCTGTAGCCTCTCCCCAGCTGTCTCTGGCTaGCTCGCTACCAGCCGGTCTTCCTGCTTCTCGTCTCCAGCACCA | + |
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Preference number: 5 (lower is better) Translates to: SLSLVSCSLSPAVSG*LATSRSSCFSSPAP Trigger: TGGTGCTGGAGACGAGAAGCAGGAAGACCGGCTGGTAGCGAGCCAGCCAGAGACAGCTGGGGAGAGGCTACAGGATACCAGTGATAAAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS CCA 90 bp | CCTGGGCGAAGCCTTTCCCCCACTTTGCCTCGTCTTCATTCCTTCTaGAGAACCTGGCAAACTCTGAGTGACTGCTGTGCTTCCTGCAGG | + |
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Preference number: 5 (lower is better) Translates to: PGRSLSPTLPRLHSF*RTWQTLSDCCASCR Trigger: CCTGCAGGAAGCACAGCAGTCACTCAGAGTTTGCCAGGTTCTCCAGAAGGAATGAAGACGAGGCAAAGTGGGGGAAAGGCTTCGCCCAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS-3UTR CAA 90 bp | GGCAGGCAGATTTCTGAGTTCAAGGGCCAGCCTGGTCTACAAAATGAGTTCCAGAGGAGCTCTCTCGTCTaGGCTTCTATCTCTCCCAGC | + |
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Preference number: 5 (lower is better) Translates to: GRQISEFKGQPGLQNEFQRSSLV*ASISPS Trigger: GCTGGGAGAGATAGAAGCCAAGACGAGAGAGCTCCT...CTGGAACTCATTTTGTAGACCAGGCTGGCCCTTGAACTCAGAAATCTGCCTGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS-3UTR CAA 90 bp | CCAGCACCTTCCCTTGTGATCTTAAGGCTGCATTTTACAATATTCATCTCCAGTCGCCGGAGGACCACCTaGCTCAGGGCTGTCCTCTTC | + |
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Preference number: 5 (lower is better) Translates to: PAPSLVILRLHFTIFISSRRRTT*LRAVLF Trigger: GAAGAGGACAGCCCTGAGCAAGGTGGTCCTCCGGCG...ACTGGAGATGAATATTGTAAAATGCAGCCTTAAGATCACAAGGGAAGGTGCTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS-3UTR CAA 90 bp | CAGAGTACAACTCTAGACCTACGAACACAAGGCAGATTGTTCTTATCTAGCTTTAGCCTTTCCCCCACTTaGCCTCGTCTTCATTCCTTC | + |
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Preference number: 5 (lower is better) Translates to: QSTTLDLRTQGRLFLSSFSLSPT*PRLHSF Trigger: GAAGGAATGAAGACGAGGCAAAGTGGGGGAAAGGCT...AAAGCTAGATAAGAACAATCTGCCTTGTGTTCGTAGGTCTAGAGTTGTACTCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS GCA 72 bp | CCTTGCTCAGGGCTGTCCTCTTCTCCTCGCGAGGCTTaGCGGCCCCGCTCTCACTTAGGGTCGGGGCCGGAG | + |
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Preference number: 6 (lower is better) Translates to: PCSGLSSSPREA*RPRSHLGSGPE Trigger: CTCCGGCCCCGACCCTAAGTGAGAGCGGGGCCGGCAAGCCTCGCGAGGAGAAGAGGACAGCCCTGAGCAAGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS CAA 72 bp | ACCTTGCTCAGGGCTGTCCTCTTCTCCTCGCGAGGCTaGCCGGCCCCGCTCTCACTTAGGGTCGGGGCCGGA | + |
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Preference number: 6 (lower is better) Translates to: TLLRAVLFSSRG*PAPLSLRVGAG Trigger: TCCGGCCCCGACCCTAAGTGAGAGCGGGGCCGGCAAGCCTCGCGAGGAGAAGAGGACAGCCCTGAGCAAGGT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS CCA 72 bp | CTGGTATCCTGTAGCCTCTCCCCAGCTGTCTCTGGCTaGCTCGCTACCAGCCGGTCTTCCTGCTTCTCGTCT | + |
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Preference number: 6 (lower is better) Translates to: LVSCSLSPAVSG*LATSRSSCFSS Trigger: AGACGAGAAGCAGGAAGACCGGCTGGTAGCGAGCCAGCCAGAGACAGCTGGGGAGAGGCTACAGGATACCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS CCA 72 bp | CCTTGTGCTCCTTGCCGCTTCTCTCTGCCACGTCCATaGGGACACTGCCATCCTGGCCCTTCTTCCCTCTGT | + |
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Preference number: 6 (lower is better) Translates to: PCAPCRFSLPRP*GHCHPGPSSLC Trigger: ACAGAGGGAAGAAGGGCCAGGATGGCAGTGTCCCCATGGACGTGGCAGAGAGAAGCGGCAAGGAGCACAAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS CAA 90 bp | AGGCGATCCTTTCTTGGCCCCAGGCTGTCATACTCCTTGTGCTCCTaGCCGCTTCTCTCTGCCACGTCCATGGGGACACTGCCATCCTGG | + |
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Preference number: 6 (lower is better) Translates to: RRSFLGPRLSYSLCS*PLLSATSMGTLPSW Trigger: CCAGGATGGCAGTGTCCCCATGGACGTGGCAGAGAGAAGCGGCAAGGAGCACAAGGAGTATGACAGCCTGGGGCCAAGAAAGGATCGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS GCA 72 bp | CGATCCTTTCTTGGCCCCAGGCTGTCATACTCCTTGTaGTCCTTGCCGCTTCTCTCTGCCACGTCCATGGGG | + |
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Preference number: 6 (lower is better) Translates to: RSFLGPRLSYSL*SLPLLSATSMG Trigger: CCCCATGGACGTGGCAGAGAGAAGCGGCAAGGAGCACAAGGAGTATGACAGCCTGGGGCCAAGAAAGGATCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS GCA 72 bp | AGAAGCTTGATCCTCACGTCCTTCTCCGCTCTCTTGTaGCTCTCCGCCTCCTTCCTCTTACAGCGGTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: RSLILTSFSALL*LSASFLLQRSS Trigger: GGAGGACCGCTGTAAGAGGAAGGAGGCGGAGAGGCACAAGAGAGCGGAGAAGGACGTGAGGATCAAGCTTCT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS CAA 72 bp | TTTCTTGGCCCCAGGCTGTCATACTCCTTGTGCTCCTaGCCGCTTCTCTCTGCCACGTCCATGGGGACACTG | + |
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Preference number: 6 (lower is better) Translates to: FLGPRLSYSLCS*PLLSATSMGTL Trigger: CAGTGTCCCCATGGACGTGGCAGAGAGAAGCGGCAAGGAGCACAAGGAGTATGACAGCCTGGGGCCAAGAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS CAA 72 bp | AGGCGATCCTTTCTTGGCCCCAGGCTGTCATACTCCTaGTGCTCCTTGCCGCTTCTCTCTGCCACGTCCATG | + |
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Preference number: 6 (lower is better) Translates to: RRSFLGPRLSYS*CSLPLLSATSM Trigger: CATGGACGTGGCAGAGAGAAGCGGCAAGGAGCACAAGGAGTATGACAGCCTGGGGCCAAGAAAGGATCGCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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| CDS CCA 72 bp | AGCCTTTCCCCCACTTTGCCTCGTCTTCATTCCTTCTaGAGAACCTGGCAAACTCTGAGTGACTGCTGTGCT | + |
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Preference number: 6 (lower is better) Translates to: SLSPTLPRLHSF*RTWQTLSDCCA Trigger: AGCACAGCAGTCACTCAGAGTTTGCCAGGTTCTCCAGAAGGAATGAAGACGAGGCAAAGTGGGGGAAAGGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043767.9 |
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