RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for UNKL (Mus musculus)

Ensembl gene IDs: ENSMUSG00000015127

Ensembl transcript IDs: ENSMUST00000015271.12, ENSMUST00000039734.12, ENSMUST00000160785.2, ENSMUST00000160896.8, ENSMUST00000162498.8

Found 294 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCTCTGGGCCCCTCTGGATCAGCTGGAGGTGAGGGTGGTCACAGGTaGAGCAGACTGCAGTCTCAGGTTCGCAGCCCCTTGTTCAGCACA +
Preference number: 1 (lower is better)
Translates to: PLGPSGSAGGEGGHR*SRLQSQVRSPLFST
Trigger: TGTGCTGAACAAGGGGCTGCGAACCTGAGACTGCAGTCTGCTGCACCTGTGACCACCCTCACCTCCAGCTGATCCAGAGGGGCCCAGAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR GCA 90 bp CCTCTGGATCAGCTGGAGGTGAGGGTGGTCACAGGTGCAGCAGACTaGAGTCTCAGGTTCGCAGCCCCTTGTTCAGCACAAGCTGGGGTG +
Preference number: 1 (lower is better)
Translates to: PLDQLEVRVVTGAAD*SLRFAAPCSAQAGV
Trigger: CACCCCAGCTTGTGCTGAACAAGGGGCTGCGAACCTGAGACTGCAGTCTGCTGCACCTGTGACCACCCTCACCTCCAGCTGATCCAGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR CCA 90 bp CTCGGTTCACAAAGTGCTTTGACGAGGCCCGACCTCCCATTGGCCTaGCCACAGCAGCCTCAGGACTGGGGGCACCAAAAGCATGCTACC +
Preference number: 1 (lower is better)
Translates to: LGSQSALTRPDLPLA*PQQPQDWGHQKHAT
Trigger: GGTAGCATGCTTTTGGTGCCCCCAGTCCTGAGGCTGCTGTGGCCAGGCCAATGGGAGGTCGGGCCTCGTCAAAGCACTTTGTGAACCGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR CCA 90 bp CTCAGGTACCAGATGTGTGCCAAGACTGTCCTGGACTCGTGCCTCTaGGCCCCTCTGGATCAGCTGGAGGTGAGGGTGGTCACAGGTGCA +
Preference number: 1 (lower is better)
Translates to: LRYQMCAKTVLDSCL*APLDQLEVRVVTGA
Trigger: TGCACCTGTGACCACCCTCACCTCCAGCTGATCCAGAGGGGCCCAGAGGCACGAGTCCAGGACAGTCTTGGCACACATCTGGTACCTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR CCA 90 bp CTGATTCCAGAAGAGCAGATGCTCAGGAAAGCTCCCCGCATGGGATaGGACCCAGGGTGCACTACCGCCTGCCTCCCCAGCCATCACAAC +
Preference number: 1 (lower is better)
Translates to: LIPEEQMLRKAPRMG*DPGCTTACLPSHHN
Trigger: GTTGTGATGGCTGGGGAGGCAGGCGGTAGTGCACCCTGGGTCCCATCCCATGCGGGGAGCTTTCCTGAGCATCTGCTCTTCTGGAATCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR GCA 90 bp CCAAGAATCTTCTCGATCATGGCCTGGCTGGCCAAGACCCCAGGCTaGAGATCAGGTACACCATCCCCTCCACTGAGCTGGCCATTCTGC +
Preference number: 1 (lower is better)
Translates to: PRIFSIMAWLAKTPG*RSGTPSPPLSWPFC
Trigger: GCAGAATGGCCAGCTCAGTGGAGGGGATGGTGTACCTGATCTGCAGCCTGGGGTCTTGGCCAGCCAGGCCATGATCGAGAAGATTCTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160785.2
3UTR GCA 90 bp GGCGACATAGGCGTGGTGGCTTCGGGCACTGCTCAGTCTTATAGCTaGCCAATACGAAGTTACTGTCTTGCCACCGAGGGTCCTCACCAA +
Preference number: 1 (lower is better)
Translates to: GDIGVVASGTAQSYS*PIRSYCLATEGPHQ
Trigger: TTGGTGAGGACCCTCGGTGGCAAGACAGTAACTTCGTATTGGGCAGCTATAAGACTGAGCAGTGCCCGAAGCCACCACGCCTATGTCGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160785.2
3UTR CCA 90 bp AGCAGAGCTGTGTTTGCTGGTCCTGTGATGAATTCTATTACTATCTaGCTGTGCAGCTCAGGTACCAGATGTGTGCCAAGACTGTCCTGG +
Preference number: 1 (lower is better)
Translates to: SRAVFAGPVMNSITI*LCSSGTRCVPRLSW
Trigger: CCAGGACAGTCTTGGCACACATCTGGTACCTGAGCTGCACAGCCAGATAGTAATAGAATTCATCACAGGACCAGCAAACACAGCTCTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR TCA 90 bp CTTATACAATTTATAATATCTAATTCCTCGGTTCACAAAGTGCTTTaGCGAGGCCCGACCTCCCATTGGCCTGGCCACAGCAGCCTCAGG +
Preference number: 1 (lower is better)
Translates to: LIQFIISNSSVHKVL*RGPTSHWPGHSSLR
Trigger: CCTGAGGCTGCTGTGGCCAGGCCAATGGGAGGTCGGGCCTCGTCAAAGCACTTTGTGAACCGAGGAATTAGATATTATAAATTGTATAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR TCA 90 bp GCATCCATACTGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTaGCACTACCATATACTGTTACTATTCAACACTAGAGAGTTAGAC +
Preference number: 1 (lower is better)
Translates to: ASILGEGLPTRYTRL*HYHILLLFNTRELD
Trigger: GTCTAACTCTCTAGTGTTGAATAGTAACAGTATATGGTAGTGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCAGTATGGATGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR TCA 90 bp AATCTAAAGCTTAATGTAACTGTATACAACTTGAAATTGTCCCGATaGGCTATCAATCACAAACACTGTCCTGTTACCACAGAGACCAAA +
Preference number: 1 (lower is better)
Translates to: NLKLNVTVYNLKLSR*AINHKHCPVTTETK
Trigger: TTTGGTCTCTGTGGTAACAGGACAGTGTTTGTGATTGATAGCTCATCGGGACAATTTCAAGTTGTATACAGTTACATTAAGCTTTAGATT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CCA 90 bp TTCCAGAAGAGCAGATGCTCAGGAAAGCTCCCCGCATGGGATGGGACCCAGGGTGGCCCGACCTCCCATTaGCCTGGCCACAGCAGCCTC +
Preference number: 2 (lower is better)
Translates to: FQKSRCSGKLPAWDGTQGGPTSH*PGHSSL
Trigger: GAGGCTGCTGTGGCCAGGCCAATGGGAGGTCGGGCC...ACCCTGGGTCCCATCCCATGCGGGGAGCTTTCCTGAGCATCTGCTCTTCTGGAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR GCA 90 bp TGTGGTAGTGTGGACAGGCGTAGCCCTGGCGACATAGGCGTGGTGGCTTCGGGCGCCAAGACCCCAGGCTaGAGATCAGGTACACCATCC +
Preference number: 2 (lower is better)
Translates to: CGSVDRRSPGDIGVVASGAKTPG*RSGTPS
Trigger: GGATGGTGTACCTGATCTGCAGCCTGGGGTCTTGGC...GCCCGAAGCCACCACGCCTATGTCGCCAGGGCTACGCCTGTCCACACTACCACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160785.2
3UTR-3UTR CCA 90 bp TACCTACCCTGTTCTAGGTCTGCCACCATGGGAGGGGTCACCTGGACAGATGTCGGCCCGACCTCCCATTaGCCTGGCCACAGCAGCCTC +
Preference number: 2 (lower is better)
Translates to: YLPCSRSATMGGVTWTDVGPTSH*PGHSSL
Trigger: GAGGCTGCTGTGGCCAGGCCAATGGGAGGTCGGGCC...GACATCTGTCCAGGTGACCCCTCCCATGGTGGCAGACCTAGAACAGGGTAGGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CCA 90 bp GACAGTGGTGGGTCCCAGTTCCTAGACCCATGGCCCCACCTCCATTACCCACACGTGCCAAGACTGTCCTaGACTCGTGCCTCTGGGCCC +
Preference number: 2 (lower is better)
Translates to: DSGGSQFLDPWPHLHYPHVPRLS*TRASGP
Trigger: GGGCCCAGAGGCACGAGTCCAGGACAGTCTTGGCAC...GTGTGGGTAATGGAGGTGGGGCCATGGGTCTAGGAACTGGGACCCACCACTGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR TCA 90 bp GACAGTGGTGGGTCCCAGTTCCTAGACCCATGGCCCCACCTCCATTACCCACACTGGATCAGCTGGAGGTaGGGGTGGTCACAGGTGCAG +
Preference number: 2 (lower is better)
Translates to: DSGGSQFLDPWPHLHYPHWISWR*GWSQVQ
Trigger: CTGCACCTGTGACCACCCTCACCTCCAGCTGATCCA...GTGTGGGTAATGGAGGTGGGGCCATGGGTCTAGGAACTGGGACCCACCACTGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR GCA 90 bp GACAGTGGTGGGTCCCAGTTCCTAGACCCATGGCCCCACCTCCATTACCCACACGAGGGTGGTCACAGGTaGAGCAGACTGCAGTCTCAG +
Preference number: 2 (lower is better)
Translates to: DSGGSQFLDPWPHLHYPHEGGHR*SRLQSQ
Trigger: CTGAGACTGCAGTCTGCTGCACCTGTGACCACCCTC...GTGTGGGTAATGGAGGTGGGGCCATGGGTCTAGGAACTGGGACCCACCACTGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CCA 90 bp GGATACCTACCCTGTTCTAGGTCTGCCACCATGGGAGGGGTCACCTGGACAGATGTGCCAAGACTGTCCTaGACTCGTGCCTCTGGGCCC +
Preference number: 2 (lower is better)
Translates to: GYLPCSRSATMGGVTWTDVPRLS*TRASGP
Trigger: GGGCCCAGAGGCACGAGTCCAGGACAGTCTTGGCAC...ATCTGTCCAGGTGACCCCTCCCATGGTGGCAGACCTAGAACAGGGTAGGTATCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR GCA 90 bp GACAGTGGTGGGTCCCAGTTCCTAGACCCATGGCCCCACCTCCATTACCCACACTCTTTGGTCCTCCCCTaGACACCTGTCCTCAGAGCT +
Preference number: 2 (lower is better)
Translates to: DSGGSQFLDPWPHLHYPHSLVLP*TPVLRA
Trigger: AGCTCTGAGGACAGGTGTGCAGGGGAGGACCAAAGA...GTGTGGGTAATGGAGGTGGGGCCATGGGTCTAGGAACTGGGACCCACCACTGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CCA 90 bp CCCACCTCCATTACCCACACACGGGCCTTAAGGCTCTCTCTCCCCTTCTTGGCCCAAGGCACAGGCACTTaGAAGTGGCCACGGATCACA +
Preference number: 2 (lower is better)
Translates to: PTSITHTRALRLSLPFLAQGTGT*KWPRIT
Trigger: TGTGATCCGTGGCCACTTCCAAGTGCCTGTGCCTTG...GGCCAAGAAGGGGAGAGAGAGCCTTAAGGCCCGTGTGTGGGTAATGGAGGTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR TCA 90 bp CCCACCTCCATTACCCACACACGGGCCTTAAGGCTCTCTCTCCCCTTCTTGGCCAGTCTCAGCAGAATTTaGGCCACAGACCAGAGGCCA +
Preference number: 2 (lower is better)
Translates to: PTSITHTRALRLSLPFLASLSRI*ATDQRP
Trigger: TGGCCTCTGGTCTGTGGCTCAAATTCTGCTGAGACT...GGCCAAGAAGGGGAGAGAGAGCCTTAAGGCCCGTGTGTGGGTAATGGAGGTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR TCA 90 bp GACAGTGGTGGGTCCCAGTTCCTAGACCCATGGCCCCACCTCCATTACCCACACAGTCTCAGCAGAATTTaGGCCACAGACCAGAGGCCA +
Preference number: 2 (lower is better)
Translates to: DSGGSQFLDPWPHLHYPHSLSRI*ATDQRP
Trigger: TGGCCTCTGGTCTGTGGCTCAAATTCTGCTGAGACT...GTGTGGGTAATGGAGGTGGGGCCATGGGTCTAGGAACTGGGACCCACCACTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CCA 90 bp CTATTAAAAGTCTTTGGCAAAGCCATGGGGAAGGAGAACCACTTCGAGGCCTGGGGCCCGACCTCCCATTaGCCTGGCCACAGCAGCCTC +
Preference number: 2 (lower is better)
Translates to: LLKVFGKAMGKENHFEAWGPTSH*PGHSSL
Trigger: GAGGCTGCTGTGGCCAGGCCAATGGGAGGTCGGGCC...CCAGGCCTCGAAGTGGTTCTCCTTCCCCATGGCTTTGCCAAAGACTTTTAATAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR GCA 90 bp TGTGCCAAGACTGTCCTGGACTCGTGCCTCTGGGCCCCTCTGGATCAGCTGGAGTTCCTTCACTTCTCTTaGAAGGCACAGGCACTTGGA +
Preference number: 2 (lower is better)
Translates to: CAKTVLDSCLWAPLDQLEFLHFS*KAQALG
Trigger: TCCAAGTGCCTGTGCCTTGCAAGAGAAGTGAAGGAA...CTCCAGCTGATCCAGAGGGGCCCAGAGGCACGAGTCCAGGACAGTCTTGGCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CCA 90 bp TGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTGACACTACCATATACTGTGTGCCAAGACTGTCCTaGACTCGTGCCTCTGGGCCC +
Preference number: 2 (lower is better)
Translates to: WGKACQPGTQDSDTTIYCVPRLS*TRASGP
Trigger: GGGCCCAGAGGCACGAGTCCAGGACAGTCTTGGCAC...ACAGTATATGGTAGTGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CCA 90 bp ACACCTGTCCTCAGAGCTCAGCCTGATTCCAGAAGAGCAGATGCTCAGGAAAGCCTAGGTCTGCCACCATaGGAGGGGTCACCTGGACAG +
Preference number: 2 (lower is better)
Translates to: TPVLRAQPDSRRADAQESLGLPP*EGSPGQ
Trigger: CTGTCCAGGTGACCCCTCCCATGGTGGCAGACCTAG...GCTTTCCTGAGCATCTGCTCTTCTGGAATCAGGCTGAGCTCTGAGGACAGGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR TCA 90 bp TGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTGACACTACCATATACTGTTGGATCAGCTGGAGGTaGGGGTGGTCACAGGTGCAG +
Preference number: 2 (lower is better)
Translates to: WGKACQPGTQDSDTTIYCWISWR*GWSQVQ
Trigger: CTGCACCTGTGACCACCCTCACCTCCAGCTGATCCA...ACAGTATATGGTAGTGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR GCA 90 bp ACACCTGTCCTCAGAGCTCAGCCTGATTCCAGAAGAGCAGATGCTCAGGAAAGCGAGGGTGGTCACAGGTaGAGCAGACTGCAGTCTCAG +
Preference number: 2 (lower is better)
Translates to: TPVLRAQPDSRRADAQESEGGHR*SRLQSQ
Trigger: CTGAGACTGCAGTCTGCTGCACCTGTGACCACCCTC...GCTTTCCTGAGCATCTGCTCTTCTGGAATCAGGCTGAGCTCTGAGGACAGGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR GCA 90 bp TGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTGACACTACCATATACTGTCAACAGCCCCAGAACTaGCCAGCCCCAGCCTGGAAT +
Preference number: 2 (lower is better)
Translates to: WGKACQPGTQDSDTTIYCQQPQN*PAPAWN
Trigger: ATTCCAGGCTGGGGCTGGGCAGTTCTGGGGCTGTTG...ACAGTATATGGTAGTGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CCA 90 bp ACACCTGTCCTCAGAGCTCAGCCTGATTCCAGAAGAGCAGATGCTCAGGAAAGCCAGCAGCCTCAGGACTaGGGGCACCAAAAGCATGCT +
Preference number: 2 (lower is better)
Translates to: TPVLRAQPDSRRADAQESQQPQD*GHQKHA
Trigger: AGCATGCTTTTGGTGCCCCCAGTCCTGAGGCTGCTG...GCTTTCCTGAGCATCTGCTCTTCTGGAATCAGGCTGAGCTCTGAGGACAGGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CCA 90 bp CCCACCTCCATTACCCACACACGGGCCTTAAGGCTCTCTCTCCCCTTCTTGGCCCAGCCACATTCACCTTaGAAACTGATGGGTGAACTG +
Preference number: 2 (lower is better)
Translates to: PTSITHTRALRLSLPFLAQPHSP*KLMGEL
Trigger: CAGTTCACCCATCAGTTTCCAAGGTGAATGTGGCTG...GGCCAAGAAGGGGAGAGAGAGCCTTAAGGCCCGTGTGTGGGTAATGGAGGTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CCA 90 bp ATGCGCATCCATACTGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTGACAAACCACTTCGAGGCCTaGGCAGAACCTGTAGGTAGG +
Preference number: 2 (lower is better)
Translates to: MRIHTGGRPANQVHKTLTNHFEA*AEPVGR
Trigger: CCTACCTACAGGTTCTGCCCAGGCCTCGAAGTGGTT...TGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCAGTATGGATGCGCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR GCA 90 bp ACACCTGTCCTCAGAGCTCAGCCTGATTCCAGAAGAGCAGATGCTCAGGAAAGCCAAAAGCATGCTACCTaGCTAGGGGACAGGCAGTGG +
Preference number: 2 (lower is better)
Translates to: TPVLRAQPDSRRADAQESQKHAT*LGDRQW
Trigger: CCACTGCCTGTCCCCTAGGCAGGTAGCATGCTTTTG...GCTTTCCTGAGCATCTGCTCTTCTGGAATCAGGCTGAGCTCTGAGGACAGGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CCA 90 bp ACACCTGTCCTCAGAGCTCAGCCTGATTCCAGAAGAGCAGATGCTCAGGAAAGCCAAGGCACAGGCACTTaGAAGTGGCCACGGATCACA +
Preference number: 2 (lower is better)
Translates to: TPVLRAQPDSRRADAQESQGTGT*KWPRIT
Trigger: TGTGATCCGTGGCCACTTCCAAGTGCCTGTGCCTTG...GCTTTCCTGAGCATCTGCTCTTCTGGAATCAGGCTGAGCTCTGAGGACAGGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CCA 90 bp CTCGATACAGTCTCAGCAGAATTTGAGCCACAGACCAGAGGCCAAGCTGTGAGCCAAGGCACAGGCACTTaGAAGTGGCCACGGATCACA +
Preference number: 2 (lower is better)
Translates to: LDTVSAEFEPQTRGQAVSQGTGT*KWPRIT
Trigger: TGTGATCCGTGGCCACTTCCAAGTGCCTGTGCCTTG...GCTCACAGCTTGGCCTCTGGTCTGTGGCTCAAATTCTGCTGAGACTGTATCGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CCA 90 bp CTATTAAAAGTCTTTGGCAAAGCCATGGGGAAGGAGAACCACTTCGAGGCCTGGCTAGGTCTGCCACCATaGGAGGGGTCACCTGGACAG +
Preference number: 2 (lower is better)
Translates to: LLKVFGKAMGKENHFEAWLGLPP*EGSPGQ
Trigger: CTGTCCAGGTGACCCCTCCCATGGTGGCAGACCTAG...CCAGGCCTCGAAGTGGTTCTCCTTCCCCATGGCTTTGCCAAAGACTTTTAATAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CCA 90 bp GAAGTTACTGTCTTGCCACCGAGGGTCCTCACCAAGAATCTTCTCGATCATGGCGGGTTTAGAGCTAGATaGCGGCAGCAGCAGCAGCAG +
Preference number: 2 (lower is better)
Translates to: EVTVLPPRVLTKNLLDHGGFRAR*RQQQQQ
Trigger: CTGCTGCTGCTGCTGCCGCCATCTAGCTCTAAACCC...GCCATGATCGAGAAGATTCTTGGTGAGGACCCTCGGTGGCAAGACAGTAACTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160785.2
3UTR-3UTR TCA 90 bp CCCACCTCCATTACCCACACACGGGCCTTAAGGCTCTCTCTCCCCTTCTTGGCCGGGAAGAAAATAATATaGAAGGCTGTTGGACAGTGG +
Preference number: 2 (lower is better)
Translates to: PTSITHTRALRLSLPFLAGKKII*KAVGQW
Trigger: CCACTGTCCAACAGCCTTTCATATTATTTTCTTCCC...GGCCAAGAAGGGGAGAGAGAGCCTTAAGGCCCGTGTGTGGGTAATGGAGGTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR TCA 90 bp TTCCAGAAGAGCAGATGCTCAGGAAAGCTCCCCGCATGGGATGGGACCCAGGGTGATCTTGGACTCCTCTaGATGTCTGACTCTTTTGCT +
Preference number: 2 (lower is better)
Translates to: FQKSRCSGKLPAWDGTQGDLGLL*MSDSFA
Trigger: AGCAAAAGAGTCAGACATTCAGAGGAGTCCAAGATC...ACCCTGGGTCCCATCCCATGCGGGGAGCTTTCCTGAGCATCTGCTCTTCTGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR GCA 90 bp GGATACCTACCCTGTTCTAGGTCTGCCACCATGGGAGGGGTCACCTGGACAGATTTCCTTCACTTCTCTTaGAAGGCACAGGCACTTGGA +
Preference number: 2 (lower is better)
Translates to: GYLPCSRSATMGGVTWTDFLHFS*KAQALG
Trigger: TCCAAGTGCCTGTGCCTTGCAAGAGAAGTGAAGGAA...ATCTGTCCAGGTGACCCCTCCCATGGTGGCAGACCTAGAACAGGGTAGGTATCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR GCA 90 bp CTATTAAAAGTCTTTGGCAAAGCCATGGGGAAGGAGAACCACTTCGAGGCCTGGGAGGGTGGTCACAGGTaGAGCAGACTGCAGTCTCAG +
Preference number: 2 (lower is better)
Translates to: LLKVFGKAMGKENHFEAWEGGHR*SRLQSQ
Trigger: CTGAGACTGCAGTCTGCTGCACCTGTGACCACCCTC...CCAGGCCTCGAAGTGGTTCTCCTTCCCCATGGCTTTGCCAAAGACTTTTAATAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR GCA 90 bp TGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTGACACTACCATATACTGTTCTTTGGTCCTCCCCTaGACACCTGTCCTCAGAGCT +
Preference number: 2 (lower is better)
Translates to: WGKACQPGTQDSDTTIYCSLVLP*TPVLRA
Trigger: AGCTCTGAGGACAGGTGTGCAGGGGAGGACCAAAGA...ACAGTATATGGTAGTGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CCA 90 bp CTCGATACAGTCTCAGCAGAATTTGAGCCACAGACCAGAGGCCAAGCTGTGAGCCACTGTAGTGGCACGTaGCATGCCCAGGCCTTTATA +
Preference number: 2 (lower is better)
Translates to: LDTVSAEFEPQTRGQAVSHCSGT*HAQAFI
Trigger: TATAAAGGCCTGGGCATGCCACGTGCCACTACAGTG...GCTCACAGCTTGGCCTCTGGTCTGTGGCTCAAATTCTGCTGAGACTGTATCGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CCA 90 bp CTATTAAAAGTCTTTGGCAAAGCCATGGGGAAGGAGAACCACTTCGAGGCCTGGCAGCAGCCTCAGGACTaGGGGCACCAAAAGCATGCT +
Preference number: 2 (lower is better)
Translates to: LLKVFGKAMGKENHFEAWQQPQD*GHQKHA
Trigger: AGCATGCTTTTGGTGCCCCCAGTCCTGAGGCTGCTG...CCAGGCCTCGAAGTGGTTCTCCTTCCCCATGGCTTTGCCAAAGACTTTTAATAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CCA 90 bp CCCACCTCCATTACCCACACACGGGCCTTAAGGCTCTCTCTCCCCTTCTTGGCCGCTATTAAAAGTCTTTaGCAAAGCCATGGGGAAGGA +
Preference number: 2 (lower is better)
Translates to: PTSITHTRALRLSLPFLAAIKSL*QSHGEG
Trigger: TCCTTCCCCATGGCTTTGCCAAAGACTTTTAATAGC...GGCCAAGAAGGGGAGAGAGAGCCTTAAGGCCCGTGTGTGGGTAATGGAGGTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CCA 90 bp ATGCGCATCCATACTGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTGACACTAAGAGGTCTGGAATaGATGGGAAAAGTGGCCCCT +
Preference number: 2 (lower is better)
Translates to: MRIHTGGRPANQVHKTLTLRGLE*MGKVAP
Trigger: AGGGGCCACTTTTCCCATCCATTCCAGACCTCTTAG...TGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCAGTATGGATGCGCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CCA 90 bp AATACGAAGTTACTGTCTTGCCACCGAGGGTCCTCACCAAGAATCTTCTCGATCTCCCCTCCACTGAGCTaGCCATTCTGCAGGGCTTCC +
Preference number: 2 (lower is better)
Translates to: NTKLLSCHRGSSPRIFSISPPLS*PFCRAS
Trigger: GGAAGCCCTGCAGAATGGCCAGCTCAGTGGAGGGGA...GATCGAGAAGATTCTTGGTGAGGACCCTCGGTGGCAAGACAGTAACTTCGTATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160785.2
3UTR-3UTR TCA 90 bp GGATACCTACCCTGTTCTAGGTCTGCCACCATGGGAGGGGTCACCTGGACAGATATTCACCTTGGAAACTaGTGGGTGAACTGTAGCAGA +
Preference number: 2 (lower is better)
Translates to: GYLPCSRSATMGGVTWTDIHLGN*WVNCSR
Trigger: TCTGCTACAGTTCACCCATCAGTTTCCAAGGTGAAT...ATCTGTCCAGGTGACCCCTCCCATGGTGGCAGACCTAGAACAGGGTAGGTATCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR TCA 90 bp TACCTACCCTGTTCTAGGTCTGCCACCATGGGAGGGGTCACCTGGACAGATGTCATTCACCTTGGAAACTaGTGGGTGAACTGTAGCAGA +
Preference number: 2 (lower is better)
Translates to: YLPCSRSATMGGVTWTDVIHLGN*WVNCSR
Trigger: TCTGCTACAGTTCACCCATCAGTTTCCAAGGTGAAT...GACATCTGTCCAGGTGACCCCTCCCATGGTGGCAGACCTAGAACAGGGTAGGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CCA 90 bp TGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTGACACTACCATATACTGTCACTGTAGTGGCACGTaGCATGCCCAGGCCTTTATA +
Preference number: 2 (lower is better)
Translates to: WGKACQPGTQDSDTTIYCHCSGT*HAQAFI
Trigger: TATAAAGGCCTGGGCATGCCACGTGCCACTACAGTG...ACAGTATATGGTAGTGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR TCA 90 bp TACCTACCCTGTTCTAGGTCTGCCACCATGGGAGGGGTCACCTGGACAGATGTCGGGAAGAAAATAATATaGAAGGCTGTTGGACAGTGG +
Preference number: 2 (lower is better)
Translates to: YLPCSRSATMGGVTWTDVGKKII*KAVGQW
Trigger: CCACTGTCCAACAGCCTTTCATATTATTTTCTTCCC...GACATCTGTCCAGGTGACCCCTCCCATGGTGGCAGACCTAGAACAGGGTAGGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR TCA 90 bp GGATACCTACCCTGTTCTAGGTCTGCCACCATGGGAGGGGTCACCTGGACAGATGGGAAGAAAATAATATaGAAGGCTGTTGGACAGTGG +
Preference number: 2 (lower is better)
Translates to: GYLPCSRSATMGGVTWTDGKKII*KAVGQW
Trigger: CCACTGTCCAACAGCCTTTCATATTATTTTCTTCCC...ATCTGTCCAGGTGACCCCTCCCATGGTGGCAGACCTAGAACAGGGTAGGTATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR TCA 90 bp CTCGATACAGTCTCAGCAGAATTTGAGCCACAGACCAGAGGCCAAGCTGTGAGCTTGGAAACTGATGGGTaGACTGTAGCAGAGCTGTGT +
Preference number: 2 (lower is better)
Translates to: LDTVSAEFEPQTRGQAVSLETDG*TVAELC
Trigger: ACACAGCTCTGCTACAGTTCACCCATCAGTTTCCAA...GCTCACAGCTTGGCCTCTGGTCTGTGGCTCAAATTCTGCTGAGACTGTATCGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR GCA 90 bp CTATTAAAAGTCTTTGGCAAAGCCATGGGGAAGGAGAACCACTTCGAGGCCTGGCCCAGGCCTTTATACTaGTCACCAGGGAAGGAATGG +
Preference number: 2 (lower is better)
Translates to: LLKVFGKAMGKENHFEAWPRPLY*SPGKEW
Trigger: CCATTCCTTCCCTGGTGAGCAGTATAAAGGCCTGGG...CCAGGCCTCGAAGTGGTTCTCCTTCCCCATGGCTTTGCCAAAGACTTTTAATAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CCA 90 bp GTGGGTTTGGTGGTGCTTCAGAGGTTCTTCGATAATACCTTGACACCGATGGTGCACTGTAGTGGCACGTaGCATGCCCAGGCCTTTATA +
Preference number: 2 (lower is better)
Translates to: VGLVVLQRFFDNTLTPMVHCSGT*HAQAFI
Trigger: TATAAAGGCCTGGGCATGCCACGTGCCACTACAGTG...CACCATCGGTGTCAAGGTATTATCGAAGAACCTCTGAAGCACCACCAAACCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CCA 90 bp ACACCTGTCCTCAGAGCTCAGCCTGATTCCAGAAGAGCAGATGCTCAGGAAAGCCAGCCACATTCACCTTaGAAACTGATGGGTGAACTG +
Preference number: 2 (lower is better)
Translates to: TPVLRAQPDSRRADAQESQPHSP*KLMGEL
Trigger: CAGTTCACCCATCAGTTTCCAAGGTGAATGTGGCTG...GCTTTCCTGAGCATCTGCTCTTCTGGAATCAGGCTGAGCTCTGAGGACAGGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CCA 90 bp ATGCGCATCCATACTGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTGACAGCTATTAAAAGTCTTTaGCAAAGCCATGGGGAAGGA +
Preference number: 2 (lower is better)
Translates to: MRIHTGGRPANQVHKTLTAIKSL*QSHGEG
Trigger: TCCTTCCCCATGGCTTTGCCAAAGACTTTTAATAGC...TGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCAGTATGGATGCGCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR TCA 90 bp CTATTAAAAGTCTTTGGCAAAGCCATGGGGAAGGAGAACCACTTCGAGGCCTGGTTGGAAACTGATGGGTaGACTGTAGCAGAGCTGTGT +
Preference number: 2 (lower is better)
Translates to: LLKVFGKAMGKENHFEAWLETDG*TVAELC
Trigger: ACACAGCTCTGCTACAGTTCACCCATCAGTTTCCAA...CCAGGCCTCGAAGTGGTTCTCCTTCCCCATGGCTTTGCCAAAGACTTTTAATAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR TCA 90 bp TGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTGACACTACCATATACTGTATTCACCTTGGAAACTaGTGGGTGAACTGTAGCAGA +
Preference number: 2 (lower is better)
Translates to: WGKACQPGTQDSDTTIYCIHLGN*WVNCSR
Trigger: TCTGCTACAGTTCACCCATCAGTTTCCAAGGTGAAT...ACAGTATATGGTAGTGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR GCA 90 bp CTATTAAAAGTCTTTGGCAAAGCCATGGGGAAGGAGAACCACTTCGAGGCCTGGTTCCTTCACTTCTCTTaGAAGGCACAGGCACTTGGA +
Preference number: 2 (lower is better)
Translates to: LLKVFGKAMGKENHFEAWFLHFS*KAQALG
Trigger: TCCAAGTGCCTGTGCCTTGCAAGAGAAGTGAAGGAA...CCAGGCCTCGAAGTGGTTCTCCTTCCCCATGGCTTTGCCAAAGACTTTTAATAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR TCA 90 bp CTCGATACAGTCTCAGCAGAATTTGAGCCACAGACCAGAGGCCAAGCTGTGAGCACTCCTCTGAATGTCTaGCTCTTTTGCTGTGTTTTT +
Preference number: 2 (lower is better)
Translates to: LDTVSAEFEPQTRGQAVSTPLNV*LFCCVF
Trigger: AAAAACACAGCAAAAGAGTCAGACATTCAGAGGAGT...GCTCACAGCTTGGCCTCTGGTCTGTGGCTCAAATTCTGCTGAGACTGTATCGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR GCA 90 bp CTATTAAAAGTCTTTGGCAAAGCCATGGGGAAGGAGAACCACTTCGAGGCCTGGAACTCCACACACATGTaGACCTGCACATGTTTAGGA +
Preference number: 2 (lower is better)
Translates to: LLKVFGKAMGKENHFEAWNSTHM*TCTCLG
Trigger: TCCTAAACATGTGCAGGTGCACATGTGTGTGGAGTT...CCAGGCCTCGAAGTGGTTCTCCTTCCCCATGGCTTTGCCAAAGACTTTTAATAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR GCA 90 bp AGAACAAATGAACACAAAGGCTTCCATAAGTTAATCCACATGCGCATCCATACTCAACAGCCCCAGAACTaGCCAGCCCCAGCCTGGAAT +
Preference number: 2 (lower is better)
Translates to: RTNEHKGFHKLIHMRIHTQQPQN*PAPAWN
Trigger: ATTCCAGGCTGGGGCTGGGCAGTTCTGGGGCTGTTG...AGTATGGATGCGCATGTGGATTAACTTATGGAAGCCTTTGTGTTCATTTGTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR GCA 90 bp AGAACAAATGAACACAAAGGCTTCCATAAGTTAATCCACATGCGCATCCATACTCCTCGGTTCACAAAGTaGTTTGACGAGGCCCGACCT +
Preference number: 2 (lower is better)
Translates to: RTNEHKGFHKLIHMRIHTPRFTK*FDEARP
Trigger: AGGTCGGGCCTCGTCAAAGCACTTTGTGAACCGAGG...AGTATGGATGCGCATGTGGATTAACTTATGGAAGCCTTTGTGTTCATTTGTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CCA 90 bp AGAACAAATGAACACAAAGGCTTCCATAAGTTAATCCACATGCGCATCCATACTAACCACTTCGAGGCCTaGGCAGAACCTGTAGGTAGG +
Preference number: 2 (lower is better)
Translates to: RTNEHKGFHKLIHMRIHTNHFEA*AEPVGR
Trigger: CCTACCTACAGGTTCTGCCCAGGCCTCGAAGTGGTT...AGTATGGATGCGCATGTGGATTAACTTATGGAAGCCTTTGTGTTCATTTGTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR GCA 90 bp AGAACAAATGAACACAAAGGCTTCCATAAGTTAATCCACATGCGCATCCATACTCCCAGGCCTTTATACTaGTCACCAGGGAAGGAATGG +
Preference number: 2 (lower is better)
Translates to: RTNEHKGFHKLIHMRIHTPRPLY*SPGKEW
Trigger: CCATTCCTTCCCTGGTGAGCAGTATAAAGGCCTGGG...AGTATGGATGCGCATGTGGATTAACTTATGGAAGCCTTTGTGTTCATTTGTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR TCA 90 bp AGAACAAATGAACACAAAGGCTTCCATAAGTTAATCCACATGCGCATCCATACTACTCCTCTGAATGTCTaGCTCTTTTGCTGTGTTTTT +
Preference number: 2 (lower is better)
Translates to: RTNEHKGFHKLIHMRIHTTPLNV*LFCCVF
Trigger: AAAAACACAGCAAAAGAGTCAGACATTCAGAGGAGT...AGTATGGATGCGCATGTGGATTAACTTATGGAAGCCTTTGTGTTCATTTGTTCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR GCA 72 bp CTCAGGAAAGCTCCCCGCATGGGATGGGACCCAGGGTaGACTACCGCCTGCCTCCCCAGCCATCACAACAGC +
Preference number: 3 (lower is better)
Translates to: LRKAPRMGWDPG*TTACLPSHHNS
Trigger: GCTGTTGTGATGGCTGGGGAGGCAGGCGGTAGTGCACCCTGGGTCCCATCCCATGCGGGGAGCTTTCCTGAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR CCA 72 bp GAAGAGCAGATGCTCAGGAAAGCTCCCCGCATGGGATaGGACCCAGGGTGCACTACCGCCTGCCTCCCCAGC +
Preference number: 3 (lower is better)
Translates to: EEQMLRKAPRMG*DPGCTTACLPS
Trigger: GCTGGGGAGGCAGGCGGTAGTGCACCCTGGGTCCCATCCCATGCGGGGAGCTTTCCTGAGCATCTGCTCTTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR GCA 72 bp CCCTCTGGATCAGCTGGAGGTGAGGGTGGTCACAGGTaGAGCAGACTGCAGTCTCAGGTTCGCAGCCCCTTG +
Preference number: 3 (lower is better)
Translates to: PSGSAGGEGGHR*SRLQSQVRSPL
Trigger: CAAGGGGCTGCGAACCTGAGACTGCAGTCTGCTGCACCTGTGACCACCCTCACCTCCAGCTGATCCAGAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR CCA 72 bp CAGATGTGTGCCAAGACTGTCCTGGACTCGTGCCTCTaGGCCCCTCTGGATCAGCTGGAGGTGAGGGTGGTC +
Preference number: 3 (lower is better)
Translates to: QMCAKTVLDSCL*APLDQLEVRVV
Trigger: GACCACCCTCACCTCCAGCTGATCCAGAGGGGCCCAGAGGCACGAGTCCAGGACAGTCTTGGCACACATCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR CCA 72 bp TTCCAGAAGAGCAGATGCTCAGGAAAGCTCCCCGCATaGGATGGGACCCAGGGTGCACTACCGCCTGCCTCC +
Preference number: 3 (lower is better)
Translates to: FQKSRCSGKLPA*DGTQGALPPAS
Trigger: GGAGGCAGGCGGTAGTGCACCCTGGGTCCCATCCCATGCGGGGAGCTTTCCTGAGCATCTGCTCTTCTGGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR GCA 72 bp AGGTACCAGATGTGTGCCAAGACTGTCCTGGACTCGTaGCTCTGGGCCCCTCTGGATCAGCTGGAGGTGAGG +
Preference number: 3 (lower is better)
Translates to: RYQMCAKTVLDS*LWAPLDQLEVR
Trigger: CCTCACCTCCAGCTGATCCAGAGGGGCCCAGAGGCACGAGTCCAGGACAGTCTTGGCACACATCTGGTACCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR CCA 72 bp TGCAGCTCAGGTACCAGATGTGTGCCAAGACTGTCCTaGACTCGTGCCTCTGGGCCCCTCTGGATCAGCTGG +
Preference number: 3 (lower is better)
Translates to: CSSGTRCVPRLS*TRASGPLWISW
Trigger: CCAGCTGATCCAGAGGGGCCCAGAGGCACGAGTCCAGGACAGTCTTGGCACACATCTGGTACCTGAGCTGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR CCA 72 bp GCCACCGAGGGTCCTCACCAAGAATCTTCTCGATCATaGCCTGGCTGGCCAAGACCCCAGGCTGCAGATCAG +
Preference number: 3 (lower is better)
Translates to: ATEGPHQESSRS*PGWPRPQAADQ
Trigger: CTGATCTGCAGCCTGGGGTCTTGGCCAGCCAGGCCATGATCGAGAAGATTCTTGGTGAGGACCCTCGGTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160785.2
3UTR-3UTR CAA 90 bp CTCGATACAGTCTCAGCAGAATTTGAGCCACAGACCAGAGGCCAAGCTGTGAGCAGGCCCGACCTCCCATaGGCCTGGCCACAGCAGCCT +
Preference number: 3 (lower is better)
Translates to: LDTVSAEFEPQTRGQAVSRPDLP*AWPQQP
Trigger: AGGCTGCTGTGGCCAGGCCAATGGGAGGTCGGGCCT...GCTCACAGCTTGGCCTCTGGTCTGTGGCTCAAATTCTGCTGAGACTGTATCGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR TCA 72 bp GGTCCTCCCCTGCACACCTGTCCTCAGAGCTCAGCCTaGTTCCAGAAGAGCAGATGCTCAGGAAAGCTCCCC +
Preference number: 3 (lower is better)
Translates to: GPPLHTCPQSSA*FQKSRCSGKLP
Trigger: GGGGAGCTTTCCTGAGCATCTGCTCTTCTGGAATCAGGCTGAGCTCTGAGGACAGGTGTGCAGGGGAGGACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR GCA 72 bp CAGCTGGAGGTGAGGGTGGTCACAGGTGCAGCAGACTaGAGTCTCAGGTTCGCAGCCCCTTGTTCAGCACAA +
Preference number: 3 (lower is better)
Translates to: QLEVRVVTGAAD*SLRFAAPCSAQ
Trigger: TTGTGCTGAACAAGGGGCTGCGAACCTGAGACTGCAGTCTGCTGCACCTGTGACCACCCTCACCTCCAGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR CCA 72 bp CATCAGGACAGTGGTGGGTCCCAGTTCCTAGACCCATaGCCCCACCTCCATTACCCACACACGGGCCTTAAG +
Preference number: 3 (lower is better)
Translates to: HQDSGGSQFLDP*PHLHYPHTGLK
Trigger: CTTAAGGCCCGTGTGTGGGTAATGGAGGTGGGGCCATGGGTCTAGGAACTGGGACCCACCACTGTCCTGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CAA 90 bp TTCCAGAAGAGCAGATGCTCAGGAAAGCTCCCCGCATGGGATGGGACCCAGGGTGGACAGGCAGTGGGTTaGGTGGTGCTTCAGAGGTTC +
Preference number: 3 (lower is better)
Translates to: FQKSRCSGKLPAWDGTQGGQAVG*VVLQRF
Trigger: GAACCTCTGAAGCACCACCAAACCCACTGCCTGTCC...ACCCTGGGTCCCATCCCATGCGGGGAGCTTTCCTGAGCATCTGCTCTTCTGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CAA 90 bp TGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTGACACTACCATATACTGTAGGCCCGACCTCCCATaGGCCTGGCCACAGCAGCCT +
Preference number: 3 (lower is better)
Translates to: WGKACQPGTQDSDTTIYCRPDLP*AWPQQP
Trigger: AGGCTGCTGTGGCCAGGCCAATGGGAGGTCGGGCCT...ACAGTATATGGTAGTGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR CCA 72 bp CGAGGGTCCTCACCAAGAATCTTCTCGATCATGGCCTaGCTGGCCAAGACCCCAGGCTGCAGATCAGGTACA +
Preference number: 3 (lower is better)
Translates to: RGSSPRIFSIMA*LAKTPGCRSGT
Trigger: TGTACCTGATCTGCAGCCTGGGGTCTTGGCCAGCCAGGCCATGATCGAGAAGATTCTTGGTGAGGACCCTCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160785.2
3UTR-3UTR CAA 90 bp TACCTACCCTGTTCTAGGTCTGCCACCATGGGAGGGGTCACCTGGACAGATGTCCAGTCTCAGCAGAATTaGAGCCACAGACCAGAGGCC +
Preference number: 3 (lower is better)
Translates to: YLPCSRSATMGGVTWTDVQSQQN*SHRPEA
Trigger: GGCCTCTGGTCTGTGGCTCAAATTCTGCTGAGACTG...GACATCTGTCCAGGTGACCCCTCCCATGGTGGCAGACCTAGAACAGGGTAGGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR GCA 72 bp GGCGTGGTGGCTTCGGGCACTGCTCAGTCTTATAGCTaGCCAATACGAAGTTACTGTCTTGCCACCGAGGGT +
Preference number: 3 (lower is better)
Translates to: GVVASGTAQSYS*PIRSYCLATEG
Trigger: ACCCTCGGTGGCAAGACAGTAACTTCGTATTGGGCAGCTATAAGACTGAGCAGTGCCCGAAGCCACCACGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160785.2
3UTR CCA 72 bp GGCAAAGCCATGGGGAAGGAGAACCACTTCGAGGCCTaGGCAGAACCTGTAGGTAGGATACCTACCCTGTTC +
Preference number: 3 (lower is better)
Translates to: GKAMGKENHFEA*AEPVGRIPTLF
Trigger: GAACAGGGTAGGTATCCTACCTACAGGTTCTGCCCAGGCCTCGAAGTGGTTCTCCTTCCCCATGGCTTTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CAA 90 bp ACACCTGTCCTCAGAGCTCAGCCTGATTCCAGAAGAGCAGATGCTCAGGAAAGCGGACAGGCAGTGGGTTaGGTGGTGCTTCAGAGGTTC +
Preference number: 3 (lower is better)
Translates to: TPVLRAQPDSRRADAQESGQAVG*VVLQRF
Trigger: GAACCTCTGAAGCACCACCAAACCCACTGCCTGTCC...GCTTTCCTGAGCATCTGCTCTTCTGGAATCAGGCTGAGCTCTGAGGACAGGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CAA 90 bp CTATTAAAAGTCTTTGGCAAAGCCATGGGGAAGGAGAACCACTTCGAGGCCTGGGCAAGGCACAGGCACTaGGAAGTGGCCACGGATCAC +
Preference number: 3 (lower is better)
Translates to: LLKVFGKAMGKENHFEAWARHRH*EVATDH
Trigger: GTGATCCGTGGCCACTTCCAAGTGCCTGTGCCTTGC...CCAGGCCTCGAAGTGGTTCTCCTTCCCCATGGCTTTGCCAAAGACTTTTAATAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CAA 90 bp TACCTACCCTGTTCTAGGTCTGCCACCATGGGAGGGGTCACCTGGACAGATGTCATTCCTTCACTTCTCTaGCAAGGCACAGGCACTTGG +
Preference number: 3 (lower is better)
Translates to: YLPCSRSATMGGVTWTDVIPSLL*QGTGTW
Trigger: CCAAGTGCCTGTGCCTTGCAAGAGAAGTGAAGGAAT...GACATCTGTCCAGGTGACCCCTCCCATGGTGGCAGACCTAGAACAGGGTAGGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CAA 90 bp ATGCGCATCCATACTGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTGACAATTCCTTCACTTCTCTaGCAAGGCACAGGCACTTGG +
Preference number: 3 (lower is better)
Translates to: MRIHTGGRPANQVHKTLTIPSLL*QGTGTW
Trigger: CCAAGTGCCTGTGCCTTGCAAGAGAAGTGAAGGAAT...TGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCAGTATGGATGCGCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR CCA 72 bp GGACATGGCAGGGAAGAAAATAATATGAAAGGCTGTTaGACAGTGGGTGTGAGCTCACATCCTGGCGTGGGG +
Preference number: 3 (lower is better)
Translates to: GHGREENNMKGC*TVGVSSHPGVG
Trigger: CCCCACGCCAGGATGTGAGCTCACACCCACTGTCCAACAGCCTTTCATATTATTTTCTTCCCTGCCATGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CAA 90 bp CTATTAAAAGTCTTTGGCAAAGCCATGGGGAAGGAGAACCACTTCGAGGCCTGGCAGTCTCAGCAGAATTaGAGCCACAGACCAGAGGCC +
Preference number: 3 (lower is better)
Translates to: LLKVFGKAMGKENHFEAWQSQQN*SHRPEA
Trigger: GGCCTCTGGTCTGTGGCTCAAATTCTGCTGAGACTG...CCAGGCCTCGAAGTGGTTCTCCTTCCCCATGGCTTTGCCAAAGACTTTTAATAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR TCA 72 bp CAAGCTGTGAGCAGCAGCCACATTCACCTTGGAAACTaGTGGGTGAACTGTAGCAGAGCTGTGTTTGCTGGT +
Preference number: 3 (lower is better)
Translates to: QAVSSSHIHLGN*WVNCSRAVFAG
Trigger: ACCAGCAAACACAGCTCTGCTACAGTTCACCCATCAGTTTCCAAGGTGAATGTGGCTGCTGCTCACAGCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR GCA 72 bp GTTAATCCACATGCGCATCCATACTGGGGGAAGGCCTaGCAACCAGGTACACAAGACTCTGACACTACCATA +
Preference number: 3 (lower is better)
Translates to: VNPHAHPYWGKA*QPGTQDSDTTI
Trigger: TATGGTAGTGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCAGTATGGATGCGCATGTGGATTAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CAA 90 bp GGATACCTACCCTGTTCTAGGTCTGCCACCATGGGAGGGGTCACCTGGACAGATGAATGTCTGACTCTTTaGCTGTGTTTTTCATTAGCA +
Preference number: 3 (lower is better)
Translates to: GYLPCSRSATMGGVTWTDECLTL*LCFSLA
Trigger: TGCTAATGAAAAACACAGCAAAAGAGTCAGACATTC...ATCTGTCCAGGTGACCCCTCCCATGGTGGCAGACCTAGAACAGGGTAGGTATCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR TCA 72 bp TTTCCAGGAACAGTCCCAGTCTTTATGGTAGAGAGCTaGAGTCACCACCCTCGATACAGTCTCAGCAGAATT +
Preference number: 3 (lower is better)
Translates to: FPGTVPVFMVES*SHHPRYSLSRI
Trigger: AATTCTGCTGAGACTGTATCGAGGGTGGTGACTTCAGCTCTCTACCATAAAGACTGGGACTGTTCCTGGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR TCA 72 bp CTGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTaGCACTACCATATACTGTTACTATTCAACACTAGA +
Preference number: 3 (lower is better)
Translates to: LGEGLPTRYTRL*HYHILLLFNTR
Trigger: TCTAGTGTTGAATAGTAACAGTATATGGTAGTGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR CCA 72 bp GTGTTTGCTGGTCCTGTGATGAATTCTATTACTATCTaGCTGTGCAGCTCAGGTACCAGATGTGTGCCAAGA +
Preference number: 3 (lower is better)
Translates to: VFAGPVMNSITI*LCSSGTRCVPR
Trigger: TCTTGGCACACATCTGGTACCTGAGCTGCACAGCCAGATAGTAATAGAATTCATCACAGGACCAGCAAACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CAA 90 bp AGAACAAATGAACACAAAGGCTTCCATAAGTTAATCCACATGCGCATCCATACTCAGTCTCAGCAGAATTaGAGCCACAGACCAGAGGCC +
Preference number: 3 (lower is better)
Translates to: RTNEHKGFHKLIHMRIHTQSQQN*SHRPEA
Trigger: GGCCTCTGGTCTGTGGCTCAAATTCTGCTGAGACTG...AGTATGGATGCGCATGTGGATTAACTTATGGAAGCCTTTGTGTTCATTTGTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR-3UTR CAA 90 bp AGAACAAATGAACACAAAGGCTTCCATAAGTTAATCCACATGCGCATCCATACTGAATGTCTGACTCTTTaGCTGTGTTTTTCATTAGCA +
Preference number: 3 (lower is better)
Translates to: RTNEHKGFHKLIHMRIHTECLTL*LCFSLA
Trigger: TGCTAATGAAAAACACAGCAAAAGAGTCAGACATTC...AGTATGGATGCGCATGTGGATTAACTTATGGAAGCCTTTGTGTTCATTTGTTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR TCA 72 bp CTTAATGTAACTGTATACAACTTGAAATTGTCCCGATaGGCTATCAATCACAAACACTGTCCTGTTACCACA +
Preference number: 3 (lower is better)
Translates to: LNVTVYNLKLSR*AINHKHCPVTT
Trigger: TGTGGTAACAGGACAGTGTTTGTGATTGATAGCTCATCGGGACAATTTCAAGTTGTATACAGTTACATTAAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp TGTGCCAAGACTGTCCTGGACTCGTGCCTCTGGGCCCCTCTGGATCAGCTGGAGGTAGGGGCTGGCCCTTaGAGTAGGGGCACTCAGGGG +
Preference number: 4 (lower is better)
Translates to: CAKTVLDSCLWAPLDQLEVGAGP*SRGTQG
Trigger: CCCCTGAGTGCCCCTACTGCAAGGGCCAGCCCCTAC...CTCCAGCTGATCCAGAGGGGCCCAGAGGCACGAGTCCAGGACAGTCTTGGCACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR TCA 90 bp TGTGGTAGTGTGGACAGGCGTAGCCCTGGCGACATAGGCGTGGTGGCTTCGGGCTGTCCGGGCTGTAGTTaGAGGTGCCATCGCGTCGTC +
Preference number: 4 (lower is better)
Translates to: CGSVDRRSPGDIGVVASGCPGCS*RCHRVV
Trigger: GACGACGCGATGGCACCTTCAACTACAGCCCGGACA...GCCCGAAGCCACCACGCCTATGTCGCCAGGGCTACGCCTGTCCACACTACCACA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160785.2
CDS-3UTR GCA 90 bp TGTGCCAAGACTGTCCTGGACTCGTGCCTCTGGGCCCCTCTGGATCAGCTGGAGCTGCCGCCTGACCCGTaGCAGCTCAGCACTGTTTGG +
Preference number: 4 (lower is better)
Translates to: CAKTVLDSCLWAPLDQLELPPDP*QLSTVW
Trigger: CCAAACAGTGCTGAGCTGGCACGGGTCAGGCGGCAG...CTCCAGCTGATCCAGAGGGGCCCAGAGGCACGAGTCCAGGACAGTCTTGGCACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp TACCTACCCTGTTCTAGGTCTGCCACCATGGGAGGGGTCACCTGGACAGATGTCAGGGCCGCAGGACAGTaGCATGGGCCCGCTCCTGGC +
Preference number: 4 (lower is better)
Translates to: YLPCSRSATMGGVTWTDVRAAGQ*HGPAPG
Trigger: GCCAGGAGCGGGCCCATGGCACTGTCCTGCGGCCCT...GACATCTGTCCAGGTGACCCCTCCCATGGTGGCAGACCTAGAACAGGGTAGGTA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CCA 90 bp TGTGCCAAGACTGTCCTGGACTCGTGCCTCTGGGCCCCTCTGGATCAGCTGGAGCCATGGGCCCGCTCCTaGCAGGCCACACACTGTTTG +
Preference number: 4 (lower is better)
Translates to: CAKTVLDSCLWAPLDQLEPWARS*QATHCL
Trigger: CAAACAGTGTGTGGCCTGCCAGGAGCGGGCCCATGG...CTCCAGCTGATCCAGAGGGGCCCAGAGGCACGAGTCCAGGACAGTCTTGGCACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR TCA 90 bp GACAGTGGTGGGTCCCAGTTCCTAGACCCATGGCCCCACCTCCATTACCCACACCTGAAGCCCTGGCAGTaGGGACAAACCCAGGCCCTC +
Preference number: 4 (lower is better)
Translates to: DSGGSQFLDPWPHLHYPHLKPWQ*GQTQAL
Trigger: GAGGGCCTGGGTTTGTCCTCACTGCCAGGGCTTCAG...GTGTGGGTAATGGAGGTGGGGCCATGGGTCTAGGAACTGGGACCCACCACTGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR TCA 90 bp TGTGCCAAGACTGTCCTGGACTCGTGCCTCTGGGCCCCTCTGGATCAGCTGGAGGCCAATGGAAACAGGTaGACGGCCTGTGCTGGCTGC +
Preference number: 4 (lower is better)
Translates to: CAKTVLDSCLWAPLDQLEANGNR*TACAGC
Trigger: GCAGCCAGCACAGGCCGTTCACCTGTTTCCATTGGC...CTCCAGCTGATCCAGAGGGGCCCAGAGGCACGAGTCCAGGACAGTCTTGGCACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039734.12
CDS-3UTR GCA 90 bp TTCCAGAAGAGCAGATGCTCAGGAAAGCTCCCCGCATGGGATGGGACCCAGGGTTTGGCCTCGTCTAGCTaGCGCCTGACCCGTGCCAGC +
Preference number: 4 (lower is better)
Translates to: FQKSRCSGKLPAWDGTQGLASSS*RLTRAS
Trigger: GCTGGCACGGGTCAGGCGGCAGCTAGACGAGGCCAA...ACCCTGGGTCCCATCCCATGCGGGGAGCTTTCCTGAGCATCTGCTCTTCTGGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp GACAGTGGTGGGTCCCAGTTCCTAGACCCATGGCCCCACCTCCATTACCCACACCTCTGCAGGGCCAGCTaGCGGTCACTGTCTGCCACA +
Preference number: 4 (lower is better)
Translates to: DSGGSQFLDPWPHLHYPHLCRAS*RSLSAT
Trigger: TGTGGCAGACAGTGACCGGCAGCTGGCCCTGCAGAG...GTGTGGGTAATGGAGGTGGGGCCATGGGTCTAGGAACTGGGACCCACCACTGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CCA 90 bp CCCACCTCCATTACCCACACACGGGCCTTAAGGCTCTCTCTCCCCTTCTTGGCCGATGTCACACACAGGTaGCCGAAGGTCCAGGGGCCC +
Preference number: 4 (lower is better)
Translates to: PTSITHTRALRLSLPFLADVTHR*PKVQGP
Trigger: GGGCCCCTGGACCTTCGGCCACCTGTGTGTGACATC...GGCCAAGAAGGGGAGAGAGAGCCTTAAGGCCCGTGTGTGGGTAATGGAGGTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039734.12
CDS-3UTR TCA 90 bp ATGGGAGGGGTCACCTGGACAGATGTCTCCTCCCTAGATTTCCAGGAACAGTCCCGTCTAGCTGCCGCCTaGCCCGTGCCAGCTCAGCAC +
Preference number: 4 (lower is better)
Translates to: MGGVTWTDVSSLDFQEQSRLAAA*PVPAQH
Trigger: GTGCTGAGCTGGCACGGGTCAGGCGGCAGCTAGACG...GGACTGTTCCTGGAAATCTAGGGAGGAGACATCTGTCCAGGTGACCCCTCCCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR TCA 90 bp TGTGCCAAGACTGTCCTGGACTCGTGCCTCTGGGCCCCTCTGGATCAGCTGGAGATGTCACCCAAGCTCTaGAGCCCTGGCAGTGAGGAC +
Preference number: 4 (lower is better)
Translates to: CAKTVLDSCLWAPLDQLEMSPKL*SPGSED
Trigger: GTCCTCACTGCCAGGGCTTCAGAGCTTGGGTGACAT...CTCCAGCTGATCCAGAGGGGCCCAGAGGCACGAGTCCAGGACAGTCTTGGCACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp TGCAAGGCACAGGCACTTGGAAGTGGCCACGGATCACATAAGTGCGCGACAGAGTTGGCCTCGTCTAGCTaGCGCCTGACCCGTGCCAGC +
Preference number: 4 (lower is better)
Translates to: CKAQALGSGHGSHKCATELASSS*RLTRAS
Trigger: GCTGGCACGGGTCAGGCGGCAGCTAGACGAGGCCAA...CTCTGTCGCGCACTTATGTGATCCGTGGCCACTTCCAAGTGCCTGTGCCTTGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp ACACCTGTCCTCAGAGCTCAGCCTGATTCCAGAAGAGCAGATGCTCAGGAAAGCAGGGCCGCAGGACAGTaGCATGGGCCCGCTCCTGGC +
Preference number: 4 (lower is better)
Translates to: TPVLRAQPDSRRADAQESRAAGQ*HGPAPG
Trigger: GCCAGGAGCGGGCCCATGGCACTGTCCTGCGGCCCT...GCTTTCCTGAGCATCTGCTCTTCTGGAATCAGGCTGAGCTCTGAGGACAGGTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp TGTGCCAAGACTGTCCTGGACTCGTGCCTCTGGGCCCCTCTGGATCAGCTGGAGTCAGGATGGAACTGCTaGTCCGTGCGGGAATGGCAG +
Preference number: 4 (lower is better)
Translates to: CAKTVLDSCLWAPLDQLESGWNC*SVREWQ
Trigger: CTGCCATTCCCGCACGGAGCAGCAGTTCCATCCTGA...CTCCAGCTGATCCAGAGGGGCCCAGAGGCACGAGTCCAGGACAGTCTTGGCACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CCA 90 bp GACAGTGGTGGGTCCCAGTTCCTAGACCCATGGCCCCACCTCCATTACCCACACCATAAGACACGGTGCTaGCAGGGCCGCAGGACAGTG +
Preference number: 4 (lower is better)
Translates to: DSGGSQFLDPWPHLHYPHHKTRC*QGRRTV
Trigger: CACTGTCCTGCGGCCCTGCCAGCACCGTGTCTTATG...GTGTGGGTAATGGAGGTGGGGCCATGGGTCTAGGAACTGGGACCCACCACTGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CCA 90 bp TTCCAGAAGAGCAGATGCTCAGGAAAGCTCCCCGCATGGGATGGGACCCAGGGTCGATCATGGCCTGGCTaGCCAAGACCCCAGGCTGCA +
Preference number: 4 (lower is better)
Translates to: FQKSRCSGKLPAWDGTQGRSWPG*PRPQAA
Trigger: TGCAGCCTGGGGTCTTGGCCAGCCAGGCCATGATCG...ACCCTGGGTCCCATCCCATGCGGGGAGCTTTCCTGAGCATCTGCTCTTCTGGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039734.12
CDS-3UTR CCA 90 bp ATGCGCATCCATACTGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTGACAGGCCCCGACAGGGACTaGGAGAGCGAGCTGAGTGGG +
Preference number: 4 (lower is better)
Translates to: MRIHTGGRPANQVHKTLTGPDRD*ESELSG
Trigger: CCCACTCAGCTCGCTCTCCCAGTCCCTGTCGGGGCC...TGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCAGTATGGATGCGCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CCA 90 bp ATGGGAGGGGTCACCTGGACAGATGTCTCCTCCCTAGATTTCCAGGAACAGTCCGGCCCCGACAGGGACTaGGAGAGCGAGCTGAGTGGG +
Preference number: 4 (lower is better)
Translates to: MGGVTWTDVSSLDFQEQSGPDRD*ESELSG
Trigger: CCCACTCAGCTCGCTCTCCCAGTCCCTGTCGGGGCC...GGACTGTTCCTGGAAATCTAGGGAGGAGACATCTGTCCAGGTGACCCCTCCCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR TCA 90 bp ACACCTGTCCTCAGAGCTCAGCCTGATTCCAGAAGAGCAGATGCTCAGGAAAGCCGTCTAGCTGCCGCCTaGCCCGTGCCAGCTCAGCAC +
Preference number: 4 (lower is better)
Translates to: TPVLRAQPDSRRADAQESRLAAA*PVPAQH
Trigger: GTGCTGAGCTGGCACGGGTCAGGCGGCAGCTAGACG...GCTTTCCTGAGCATCTGCTCTTCTGGAATCAGGCTGAGCTCTGAGGACAGGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR TCA 90 bp TGCAAGGCACAGGCACTTGGAAGTGGCCACGGATCACATAAGTGCGCGACAGAGCTGAAGCCCTGGCAGTaGGGACAAACCCAGGCCCTC +
Preference number: 4 (lower is better)
Translates to: CKAQALGSGHGSHKCATELKPWQ*GQTQAL
Trigger: GAGGGCCTGGGTTTGTCCTCACTGCCAGGGCTTCAG...CTCTGTCGCGCACTTATGTGATCCGTGGCCACTTCCAAGTGCCTGTGCCTTGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR TCA 90 bp TTCCAGAAGAGCAGATGCTCAGGAAAGCTCCCCGCATGGGATGGGACCCAGGGTGAGCCTGAAGCTCCCTaGTGTCACACACAGGTGGCC +
Preference number: 4 (lower is better)
Translates to: FQKSRCSGKLPAWDGTQGEPEAP*CHTQVA
Trigger: GGCCACCTGTGTGTGACATCAGGGAGCTTCAGGCTC...ACCCTGGGTCCCATCCCATGCGGGGAGCTTTCCTGAGCATCTGCTCTTCTGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039734.12
CDS-3UTR TCA 90 bp ATGCGCATCCATACTGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTGACAAATGGTGACGGGTGCTaGGCCTGCCAGCGACCTGGG +
Preference number: 4 (lower is better)
Translates to: MRIHTGGRPANQVHKTLTNGDGC*ACQRPG
Trigger: CCCAGGTCGCTGGCAGGCTCAGCACCCGTCACCATT...TGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCAGTATGGATGCGCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp TACCTACCCTGTTCTAGGTCTGCCACCATGGGAGGGGTCACCTGGACAGATGTCCTGCCGCCTGACCCGTaGCAGCTCAGCACTGTTTGG +
Preference number: 4 (lower is better)
Translates to: YLPCSRSATMGGVTWTDVLPPDP*QLSTVW
Trigger: CCAAACAGTGCTGAGCTGGCACGGGTCAGGCGGCAG...GACATCTGTCCAGGTGACCCCTCCCATGGTGGCAGACCTAGAACAGGGTAGGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp TGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTGACACTACCATATACTGTAGGGCCGCAGGACAGTaGCATGGGCCCGCTCCTGGC +
Preference number: 4 (lower is better)
Translates to: WGKACQPGTQDSDTTIYCRAAGQ*HGPAPG
Trigger: GCCAGGAGCGGGCCCATGGCACTGTCCTGCGGCCCT...ACAGTATATGGTAGTGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp TGTGCCAAGACTGTCCTGGACTCGTGCCTCTGGGCCCCTCTGGATCAGCTGGAGTGTGCGAAGGCACAGTaGAGCCCGTTCTTCACACAG +
Preference number: 4 (lower is better)
Translates to: CAKTVLDSCLWAPLDQLECAKAQ*SPFFTQ
Trigger: CTGTGTGAAGAACGGGCTGCACTGTGCCTTCGCACA...CTCCAGCTGATCCAGAGGGGCCCAGAGGCACGAGTCCAGGACAGTCTTGGCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039734.12
CDS-3UTR GCA 90 bp ACACCTGTCCTCAGAGCTCAGCCTGATTCCAGAAGAGCAGATGCTCAGGAAAGCTGGTGGGGGAGGAGCTaGCCGAGCCAGTGCTGGACG +
Preference number: 4 (lower is better)
Translates to: TPVLRAQPDSRRADAQESWWGRS*PSQCWT
Trigger: CGTCCAGCACTGGCTCGGGCAGCTCCTCCCCCACCA...GCTTTCCTGAGCATCTGCTCTTCTGGAATCAGGCTGAGCTCTGAGGACAGGTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CCA 90 bp CCCACCTCCATTACCCACACACGGGCCTTAAGGCTCTCTCTCCCCTTCTTGGCCCACGGGCTCTTTCCTTaGCCTCCTGAGCCTCTCTCT +
Preference number: 4 (lower is better)
Translates to: PTSITHTRALRLSLPFLAHGLFP*PPEPLS
Trigger: AGAGAGAGGCTCAGGAGGCCAAGGAAAGAGCCCGTG...GGCCAAGAAGGGGAGAGAGAGCCTTAAGGCCCGTGTGTGGGTAATGGAGGTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CCA 90 bp GGCGACATAGGCGTGGTGGCTTCGGGCACTGCTCAGTCTTATAGCTGCCCAATACGGGACACAGGCCGGTaGCCTCATCGTACTTGGAGC +
Preference number: 4 (lower is better)
Translates to: GDIGVVASGTAQSYSCPIRDTGR*PHRTWS
Trigger: GCTCCAAGTACGATGAGGCCACCGGCCTGTGTCCCG...TATTGGGCAGCTATAAGACTGAGCAGTGCCCGAAGCCACCACGCCTATGTCGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160785.2
CDS-3UTR TCA 90 bp TTCCAGAAGAGCAGATGCTCAGGAAAGCTCCCCGCATGGGATGGGACCCAGGGTGTTTGGACTTGCACTTaGGGAAGCCGAAGGGCCGGA +
Preference number: 4 (lower is better)
Translates to: FQKSRCSGKLPAWDGTQGVWTCT*GSRRAG
Trigger: TCCGGCCCTTCGGCTTCCTCAAGTGCAAGTCCAAAC...ACCCTGGGTCCCATCCCATGCGGGGAGCTTTCCTGAGCATCTGCTCTTCTGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR TCA 90 bp ATGGGAGGGGTCACCTGGACAGATGTCTCCTCCCTAGATTTCCAGGAACAGTCCCTGAAGCCCTGGCAGTaGGGACAAACCCAGGCCCTC +
Preference number: 4 (lower is better)
Translates to: MGGVTWTDVSSLDFQEQSLKPWQ*GQTQAL
Trigger: GAGGGCCTGGGTTTGTCCTCACTGCCAGGGCTTCAG...GGACTGTTCCTGGAAATCTAGGGAGGAGACATCTGTCCAGGTGACCCCTCCCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR TCA 90 bp GGATACCTACCCTGTTCTAGGTCTGCCACCATGGGAGGGGTCACCTGGACAGATTGTCCGGGCTGTAGTTaGAGGTGCCATCGCGTCGTC +
Preference number: 4 (lower is better)
Translates to: GYLPCSRSATMGGVTWTDCPGCS*RCHRVV
Trigger: GACGACGCGATGGCACCTTCAACTACAGCCCGGACA...ATCTGTCCAGGTGACCCCTCCCATGGTGGCAGACCTAGAACAGGGTAGGTATCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039734.12
CDS-3UTR TCA 90 bp TACCTACCCTGTTCTAGGTCTGCCACCATGGGAGGGGTCACCTGGACAGATGTCCGGGAATGGCAGTACTaGCAGCTGTCCCCACCGTCA +
Preference number: 4 (lower is better)
Translates to: YLPCSRSATMGGVTWTDVREWQY*QLSPPS
Trigger: TGACGGTGGGGACAGCTGTCAGTACTGCCATTCCCG...GACATCTGTCCAGGTGACCCCTCCCATGGTGGCAGACCTAGAACAGGGTAGGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp TACCTACCCTGTTCTAGGTCTGCCACCATGGGAGGGGTCACCTGGACAGATGTCTCGCATAAGACACGGTaGTGGCAGGGCCGCAGGACA +
Preference number: 4 (lower is better)
Translates to: YLPCSRSATMGGVTWTDVSHKTR*WQGRRT
Trigger: TGTCCTGCGGCCCTGCCAGCACCGTGTCTTATGCGA...GACATCTGTCCAGGTGACCCCTCCCATGGTGGCAGACCTAGAACAGGGTAGGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp ACACCTGTCCTCAGAGCTCAGCCTGATTCCAGAAGAGCAGATGCTCAGGAAAGCGTAGGGGCTGGCCCTTaGAGTAGGGGCACTCAGGGG +
Preference number: 4 (lower is better)
Translates to: TPVLRAQPDSRRADAQESVGAGP*SRGTQG
Trigger: CCCCTGAGTGCCCCTACTGCAAGGGCCAGCCCCTAC...GCTTTCCTGAGCATCTGCTCTTCTGGAATCAGGCTGAGCTCTGAGGACAGGTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp TGTGGTAGTGTGGACAGGCGTAGCCCTGGCGACATAGGCGTGGTGGCTTCGGGCTGGCTGCACTTATGCTaGAAAAACAGGGAGCACTGC +
Preference number: 4 (lower is better)
Translates to: CGSVDRRSPGDIGVVASGWLHLC*KNREHC
Trigger: GCAGTGCTCCCTGTTTTTGCAGCATAAGTGCAGCCA...GCCCGAAGCCACCACGCCTATGTCGCCAGGGCTACGCCTGTCCACACTACCACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160785.2
CDS-3UTR GCA 90 bp CCCACCTCCATTACCCACACACGGGCCTTAAGGCTCTCTCTCCCCTTCTTGGCCATCTCAGGATGGAACTaGTGCTCCGTGCGGGAATGG +
Preference number: 4 (lower is better)
Translates to: PTSITHTRALRLSLPFLAISGWN*CSVREW
Trigger: CCATTCCCGCACGGAGCAGCAGTTCCATCCTGAGAT...GGCCAAGAAGGGGAGAGAGAGCCTTAAGGCCCGTGTGTGGGTAATGGAGGTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp TGTGCCAAGACTGTCCTGGACTCGTGCCTCTGGGCCCCTCTGGATCAGCTGGAGGCTCTTCTCAGTGTGTaGAAAGGCACAGAAAGGGCC +
Preference number: 4 (lower is better)
Translates to: CAKTVLDSCLWAPLDQLEALLSV*KGTERA
Trigger: GGCCCTTTCTGTGCCTTTGCACACACTGAGAAGAGC...CTCCAGCTGATCCAGAGGGGCCCAGAGGCACGAGTCCAGGACAGTCTTGGCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CCA 90 bp ATGCGCATCCATACTGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTGACACGGGACACAGGCCGGTaGCCTCATCGTACTTGGAGC +
Preference number: 4 (lower is better)
Translates to: MRIHTGGRPANQVHKTLTRDTGR*PHRTWS
Trigger: GCTCCAAGTACGATGAGGCCACCGGCCTGTGTCCCG...TGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCAGTATGGATGCGCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039734.12
CDS-3UTR CCA 90 bp TGCAAGGCACAGGCACTTGGAAGTGGCCACGGATCACATAAGTGCGCGACAGAGTCCCCTCCACTGAGCTaGCCATTCTGCAGGGCTTCC +
Preference number: 4 (lower is better)
Translates to: CKAQALGSGHGSHKCATESPPLS*PFCRAS
Trigger: GGAAGCCCTGCAGAATGGCCAGCTCAGTGGAGGGGA...CTCTGTCGCGCACTTATGTGATCCGTGGCCACTTCCAAGTGCCTGTGCCTTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039734.12
CDS-3UTR CCA 90 bp CCCACCTCCATTACCCACACACGGGCCTTAAGGCTCTCTCTCCCCTTCTTGGCCGGGAGTCTTTCCTTTTaGCACTTCCAGGCTGGCTGC +
Preference number: 4 (lower is better)
Translates to: PTSITHTRALRLSLPFLAGSLSF*HFQAGC
Trigger: GCAGCCAGCCTGGAAGTGCCAAAAGGAAAGACTCCC...GGCCAAGAAGGGGAGAGAGAGCCTTAAGGCCCGTGTGTGGGTAATGGAGGTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp CTCGATACAGTCTCAGCAGAATTTGAGCCACAGACCAGAGGCCAAGCTGTGAGCCTCTGCAGGGCCAGCTaGCGGTCACTGTCTGCCACA +
Preference number: 4 (lower is better)
Translates to: LDTVSAEFEPQTRGQAVSLCRAS*RSLSAT
Trigger: TGTGGCAGACAGTGACCGGCAGCTGGCCCTGCAGAG...GCTCACAGCTTGGCCTCTGGTCTGTGGCTCAAATTCTGCTGAGACTGTATCGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp TGCAAGGCACAGGCACTTGGAAGTGGCCACGGATCACATAAGTGCGCGACAGAGGCCAAGACCCCAGGCTaGAGATCAGGTACACCATCC +
Preference number: 4 (lower is better)
Translates to: CKAQALGSGHGSHKCATEAKTPG*RSGTPS
Trigger: GGATGGTGTACCTGATCTGCAGCCTGGGGTCTTGGC...CTCTGTCGCGCACTTATGTGATCCGTGGCCACTTCCAAGTGCCTGTGCCTTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039734.12
CDS-3UTR GCA 90 bp TGCAAGGCACAGGCACTTGGAAGTGGCCACGGATCACATAAGTGCGCGACAGAGCCACACTGGAGCTTATaGTGTGGGCCAGTGGGTGAG +
Preference number: 4 (lower is better)
Translates to: CKAQALGSGHGSHKCATEPHWSL*CGPVGE
Trigger: CTCACCCACTGGCCCACAGCATAAGCTCCAGTGTGG...CTCTGTCGCGCACTTATGTGATCCGTGGCCACTTCCAAGTGCCTGTGCCTTGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp GTGGGTTTGGTGGTGCTTCAGAGGTTCTTCGATAATACCTTGACACCGATGGTGTGGTGGGGGAGGAGCTaGCCGAGCCAGTGCTGGACG +
Preference number: 4 (lower is better)
Translates to: VGLVVLQRFFDNTLTPMVWWGRS*PSQCWT
Trigger: CGTCCAGCACTGGCTCGGGCAGCTCCTCCCCCACCA...CACCATCGGTGTCAAGGTATTATCGAAGAACCTCTGAAGCACCACCAAACCCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp ATGCGCATCCATACTGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTGACAGGCAGAACCTATGACTaGCCCCACAGTGTTGCCGGC +
Preference number: 4 (lower is better)
Translates to: MRIHTGGRPANQVHKTLTGRTYD*PHSVAG
Trigger: GCCGGCAACACTGTGGGGGCAGTCATAGGTTCTGCC...TGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCAGTATGGATGCGCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CCA 90 bp TGCAAGGCACAGGCACTTGGAAGTGGCCACGGATCACATAAGTGCGCGACAGAGCACGGGCTCTTTCCTTaGCCTCCTGAGCCTCTCTCT +
Preference number: 4 (lower is better)
Translates to: CKAQALGSGHGSHKCATEHGLFP*PPEPLS
Trigger: AGAGAGAGGCTCAGGAGGCCAAGGAAAGAGCCCGTG...CTCTGTCGCGCACTTATGTGATCCGTGGCCACTTCCAAGTGCCTGTGCCTTGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CCA 90 bp GGATACCTACCCTGTTCTAGGTCTGCCACCATGGGAGGGGTCACCTGGACAGATCACGGGCTCTTTCCTTaGCCTCCTGAGCCTCTCTCT +
Preference number: 4 (lower is better)
Translates to: GYLPCSRSATMGGVTWTDHGLFP*PPEPLS
Trigger: AGAGAGAGGCTCAGGAGGCCAAGGAAAGAGCCCGTG...ATCTGTCCAGGTGACCCCTCCCATGGTGGCAGACCTAGAACAGGGTAGGTATCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CCA 90 bp CCCACCTCCATTACCCACACACGGGCCTTAAGGCTCTCTCTCCCCTTCTTGGCCAGGCCACACACTGTTTaGCACGGAGCTGGAAGATCA +
Preference number: 4 (lower is better)
Translates to: PTSITHTRALRLSLPFLARPHTV*HGAGRS
Trigger: TGATCTTCCAGCTCCGTGCCAAACAGTGTGTGGCCT...GGCCAAGAAGGGGAGAGAGAGCCTTAAGGCCCGTGTGTGGGTAATGGAGGTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CCA 90 bp GACAGTGGTGGGTCCCAGTTCCTAGACCCATGGCCCCACCTCCATTACCCACACATACCTGTAGTGGGTTaGTTTCTCTGTCTGCGGGGG +
Preference number: 4 (lower is better)
Translates to: DSGGSQFLDPWPHLHYPHIPVVG*FLCLRG
Trigger: CCCCCGCAGACAGAGAAACCAACCCACTACAGGTAT...GTGTGGGTAATGGAGGTGGGGCCATGGGTCTAGGAACTGGGACCCACCACTGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039734.12
CDS-3UTR TCA 90 bp ATGGGAGGGGTCACCTGGACAGATGTCTCCTCCCTAGATTTCCAGGAACAGTCCGTTTGGACTTGCACTTaGGGAAGCCGAAGGGCCGGA +
Preference number: 4 (lower is better)
Translates to: MGGVTWTDVSSLDFQEQSVWTCT*GSRRAG
Trigger: TCCGGCCCTTCGGCTTCCTCAAGTGCAAGTCCAAAC...GGACTGTTCCTGGAAATCTAGGGAGGAGACATCTGTCCAGGTGACCCCTCCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp TTCCAGAAGAGCAGATGCTCAGGAAAGCTCCCCGCATGGGATGGGACCCAGGGTAAACAAAGTCCCAGATaGTCCCGGGAACGCCGTTCA +
Preference number: 4 (lower is better)
Translates to: FQKSRCSGKLPAWDGTQGKQSPR*SRERRS
Trigger: TGAACGGCGTTCCCGGGAGCATCTGGGACTTTGTTT...ACCCTGGGTCCCATCCCATGCGGGGAGCTTTCCTGAGCATCTGCTCTTCTGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp CTCGATACAGTCTCAGCAGAATTTGAGCCACAGACCAGAGGCCAAGCTGTGAGCTCGCATAAGACACGGTaGTGGCAGGGCCGCAGGACA +
Preference number: 4 (lower is better)
Translates to: LDTVSAEFEPQTRGQAVSSHKTR*WQGRRT
Trigger: TGTCCTGCGGCCCTGCCAGCACCGTGTCTTATGCGA...GCTCACAGCTTGGCCTCTGGTCTGTGGCTCAAATTCTGCTGAGACTGTATCGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp GTGGGTTTGGTGGTGCTTCAGAGGTTCTTCGATAATACCTTGACACCGATGGTGGTAGGGGCTGGCCCTTaGAGTAGGGGCACTCAGGGG +
Preference number: 4 (lower is better)
Translates to: VGLVVLQRFFDNTLTPMVVGAGP*SRGTQG
Trigger: CCCCTGAGTGCCCCTACTGCAAGGGCCAGCCCCTAC...CACCATCGGTGTCAAGGTATTATCGAAGAACCTCTGAAGCACCACCAAACCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp ATGGGAGGGGTCACCTGGACAGATGTCTCCTCCCTAGATTTCCAGGAACAGTCCCCACACTGGAGCTTATaGTGTGGGCCAGTGGGTGAG +
Preference number: 4 (lower is better)
Translates to: MGGVTWTDVSSLDFQEQSPHWSL*CGPVGE
Trigger: CTCACCCACTGGCCCACAGCATAAGCTCCAGTGTGG...GGACTGTTCCTGGAAATCTAGGGAGGAGACATCTGTCCAGGTGACCCCTCCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp ACACCTGTCCTCAGAGCTCAGCCTGATTCCAGAAGAGCAGATGCTCAGGAAAGCGGCAGAACCTATGACTaGCCCCACAGTGTTGCCGGC +
Preference number: 4 (lower is better)
Translates to: TPVLRAQPDSRRADAQESGRTYD*PHSVAG
Trigger: GCCGGCAACACTGTGGGGGCAGTCATAGGTTCTGCC...GCTTTCCTGAGCATCTGCTCTTCTGGAATCAGGCTGAGCTCTGAGGACAGGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CCA 90 bp TACCTACCCTGTTCTAGGTCTGCCACCATGGGAGGGGTCACCTGGACAGATGTCAAGCGCAGCTTGCTCTaGAGAGAATGCAGCTTGGGG +
Preference number: 4 (lower is better)
Translates to: YLPCSRSATMGGVTWTDVKRSLL*RECSLG
Trigger: CCCCAAGCTGCATTCTCTCCAGAGCAAGCTGCGCTT...GACATCTGTCCAGGTGACCCCTCCCATGGTGGCAGACCTAGAACAGGGTAGGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CCA 90 bp ACACCTGTCCTCAGAGCTCAGCCTGATTCCAGAAGAGCAGATGCTCAGGAAAGCCATAAGACACGGTGCTaGCAGGGCCGCAGGACAGTG +
Preference number: 4 (lower is better)
Translates to: TPVLRAQPDSRRADAQESHKTRC*QGRRTV
Trigger: CACTGTCCTGCGGCCCTGCCAGCACCGTGTCTTATG...GCTTTCCTGAGCATCTGCTCTTCTGGAATCAGGCTGAGCTCTGAGGACAGGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CCA 90 bp TACCTACCCTGTTCTAGGTCTGCCACCATGGGAGGGGTCACCTGGACAGATGTCGGGAGTCTTTCCTTTTaGCACTTCCAGGCTGGCTGC +
Preference number: 4 (lower is better)
Translates to: YLPCSRSATMGGVTWTDVGSLSF*HFQAGC
Trigger: GCAGCCAGCCTGGAAGTGCCAAAAGGAAAGACTCCC...GACATCTGTCCAGGTGACCCCTCCCATGGTGGCAGACCTAGAACAGGGTAGGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CCA 90 bp ATGCGCATCCATACTGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTGACAAGCCTGCCAGCGACCTaGGACCTGTCAATCCAAGGT +
Preference number: 4 (lower is better)
Translates to: MRIHTGGRPANQVHKTLTSLPAT*DLSIQG
Trigger: ACCTTGGATTGACAGGTCCCAGGTCGCTGGCAGGCT...TGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCAGTATGGATGCGCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR TCA 90 bp CTCGATACAGTCTCAGCAGAATTTGAGCCACAGACCAGAGGCCAAGCTGTGAGCATGTCACCCAAGCTCTaGAGCCCTGGCAGTGAGGAC +
Preference number: 4 (lower is better)
Translates to: LDTVSAEFEPQTRGQAVSMSPKL*SPGSED
Trigger: GTCCTCACTGCCAGGGCTTCAGAGCTTGGGTGACAT...GCTCACAGCTTGGCCTCTGGTCTGTGGCTCAAATTCTGCTGAGACTGTATCGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR TCA 90 bp GAAGTTACTGTCTTGCCACCGAGGGTCCTCACCAAGAATCTTCTCGATCATGGCGCCAATGGAAACAGGTaGACGGCCTGTGCTGGCTGC +
Preference number: 4 (lower is better)
Translates to: EVTVLPPRVLTKNLLDHGANGNR*TACAGC
Trigger: GCAGCCAGCACAGGCCGTTCACCTGTTTCCATTGGC...GCCATGATCGAGAAGATTCTTGGTGAGGACCCTCGGTGGCAAGACAGTAACTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160785.2
CDS-3UTR TCA 90 bp TGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTGACACTACCATATACTGTCGGGAATGGCAGTACTaGCAGCTGTCCCCACCGTCA +
Preference number: 4 (lower is better)
Translates to: WGKACQPGTQDSDTTIYCREWQY*QLSPPS
Trigger: TGACGGTGGGGACAGCTGTCAGTACTGCCATTCCCG...ACAGTATATGGTAGTGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp TACCTACCCTGTTCTAGGTCTGCCACCATGGGAGGGGTCACCTGGACAGATGTCAAACAAAGTCCCAGATaGTCCCGGGAACGCCGTTCA +
Preference number: 4 (lower is better)
Translates to: YLPCSRSATMGGVTWTDVKQSPR*SRERRS
Trigger: TGAACGGCGTTCCCGGGAGCATCTGGGACTTTGTTT...GACATCTGTCCAGGTGACCCCTCCCATGGTGGCAGACCTAGAACAGGGTAGGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp ACACCTGTCCTCAGAGCTCAGCCTGATTCCAGAAGAGCAGATGCTCAGGAAAGCCTGCCGGTCACTGTCTaGCACACGGGCTCTTTCCTT +
Preference number: 4 (lower is better)
Translates to: TPVLRAQPDSRRADAQESLPVTV*HTGSFL
Trigger: AAGGAAAGAGCCCGTGTGGCAGACAGTGACCGGCAG...GCTTTCCTGAGCATCTGCTCTTCTGGAATCAGGCTGAGCTCTGAGGACAGGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp GAAGTTACTGTCTTGCCACCGAGGGTCCTCACCAAGAATCTTCTCGATCATGGCAGCGCAGGTGGTACTTaGGCTCCGTGTCCCCAGTTG +
Preference number: 4 (lower is better)
Translates to: EVTVLPPRVLTKNLLDHGSAGGT*APCPQL
Trigger: CAACTGGGGACACGGAGCGCAAGTACCACCTGCGCT...GCCATGATCGAGAAGATTCTTGGTGAGGACCCTCGGTGGCAAGACAGTAACTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160785.2
CDS-3UTR GCA 90 bp TACCTACCCTGTTCTAGGTCTGCCACCATGGGAGGGGTCACCTGGACAGATGTCGCTCTTCTCAGTGTGTaGAAAGGCACAGAAAGGGCC +
Preference number: 4 (lower is better)
Translates to: YLPCSRSATMGGVTWTDVALLSV*KGTERA
Trigger: GGCCCTTTCTGTGCCTTTGCACACACTGAGAAGAGC...GACATCTGTCCAGGTGACCCCTCCCATGGTGGCAGACCTAGAACAGGGTAGGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CCA 90 bp CTATTAAAAGTCTTTGGCAAAGCCATGGGGAAGGAGAACCACTTCGAGGCCTGGCCATGGGCCCGCTCCTaGCAGGCCACACACTGTTTG +
Preference number: 4 (lower is better)
Translates to: LLKVFGKAMGKENHFEAWPWARS*QATHCL
Trigger: CAAACAGTGTGTGGCCTGCCAGGAGCGGGCCCATGG...CCAGGCCTCGAAGTGGTTCTCCTTCCCCATGGCTTTGCCAAAGACTTTTAATAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CCA 90 bp GTGGGTTTGGTGGTGCTTCAGAGGTTCTTCGATAATACCTTGACACCGATGGTGCCATGGGCCCGCTCCTaGCAGGCCACACACTGTTTG +
Preference number: 4 (lower is better)
Translates to: VGLVVLQRFFDNTLTPMVPWARS*QATHCL
Trigger: CAAACAGTGTGTGGCCTGCCAGGAGCGGGCCCATGG...CACCATCGGTGTCAAGGTATTATCGAAGAACCTCTGAAGCACCACCAAACCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CCA 90 bp TGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTGACACTACCATATACTGTCATAAGACACGGTGCTaGCAGGGCCGCAGGACAGTG +
Preference number: 4 (lower is better)
Translates to: WGKACQPGTQDSDTTIYCHKTRC*QGRRTV
Trigger: CACTGTCCTGCGGCCCTGCCAGCACCGTGTCTTATG...ACAGTATATGGTAGTGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CCA 90 bp GTGGCTTCGGGCACTGCTCAGTCTTATAGCTGCCCAATACGAAGTTACTGTCTTGATGTCACACACAGGTaGCCGAAGGTCCAGGGGCCC +
Preference number: 4 (lower is better)
Translates to: VASGTAQSYSCPIRSYCLDVTHR*PKVQGP
Trigger: GGGCCCCTGGACCTTCGGCCACCTGTGTGTGACATC...AAGACAGTAACTTCGTATTGGGCAGCTATAAGACTGAGCAGTGCCCGAAGCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160785.2
CDS-3UTR TCA 90 bp GGATACCTACCCTGTTCTAGGTCTGCCACCATGGGAGGGGTCACCTGGACAGATATTCTTCCCATTGCCTaGTCTTCCTCTTGGCCTCGT +
Preference number: 4 (lower is better)
Translates to: GYLPCSRSATMGGVTWTDILPIA*SSSWPR
Trigger: ACGAGGCCAAGAGGAAGATCAGGCAATGGGAAGAAT...ATCTGTCCAGGTGACCCCTCCCATGGTGGCAGACCTAGAACAGGGTAGGTATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR TCA 90 bp ATGCGCATCCATACTGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTGACAGGAGAGGGATGTCACTaGTGTCACCCAAGCTCTGAA +
Preference number: 4 (lower is better)
Translates to: MRIHTGGRPANQVHKTLTGEGCH*CHPSSE
Trigger: TTCAGAGCTTGGGTGACATCAGTGACATCCCTCTCC...TGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCAGTATGGATGCGCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp ATGCGCATCCATACTGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTGACAAAACAAAGTCCCAGATaGTCCCGGGAACGCCGTTCA +
Preference number: 4 (lower is better)
Translates to: MRIHTGGRPANQVHKTLTKQSPR*SRERRS
Trigger: TGAACGGCGTTCCCGGGAGCATCTGGGACTTTGTTT...TGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCAGTATGGATGCGCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp TGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTGACACTACCATATACTGTCTGCCGGTCACTGTCTaGCACACGGGCTCTTTCCTT +
Preference number: 4 (lower is better)
Translates to: WGKACQPGTQDSDTTIYCLPVTV*HTGSFL
Trigger: AAGGAAAGAGCCCGTGTGGCAGACAGTGACCGGCAG...ACAGTATATGGTAGTGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp ATGGGAGGGGTCACCTGGACAGATGTCTCCTCCCTAGATTTCCAGGAACAGTCCTTGCTCTGGAGAGAATaGAGCTTGGGGAGAGGGATG +
Preference number: 4 (lower is better)
Translates to: MGGVTWTDVSSLDFQEQSLLWRE*SLGRGM
Trigger: CATCCCTCTCCCCAAGCTGCATTCTCTCCAGAGCAA...GGACTGTTCCTGGAAATCTAGGGAGGAGACATCTGTCCAGGTGACCCCTCCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp TGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTGACACTACCATATACTGTTCAGGATGGAACTGCTaGTCCGTGCGGGAATGGCAG +
Preference number: 4 (lower is better)
Translates to: WGKACQPGTQDSDTTIYCSGWNC*SVREWQ
Trigger: CTGCCATTCCCGCACGGAGCAGCAGTTCCATCCTGA...ACAGTATATGGTAGTGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CCA 90 bp ATGCGCATCCATACTGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTGACAGCAGCTGCTTCACCTTaGCTTCCACCTCTTCTTTCC +
Preference number: 4 (lower is better)
Translates to: MRIHTGGRPANQVHKTLTAAASP*LPPLLS
Trigger: GGAAAGAAGAGGTGGAAGCCAAGGTGAAGCAGCTGC...TGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCAGTATGGATGCGCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CCA 90 bp ACACCTGTCCTCAGAGCTCAGCCTGATTCCAGAAGAGCAGATGCTCAGGAAAGCAAGCGCAGCTTGCTCTaGAGAGAATGCAGCTTGGGG +
Preference number: 4 (lower is better)
Translates to: TPVLRAQPDSRRADAQESKRSLL*RECSLG
Trigger: CCCCAAGCTGCATTCTCTCCAGAGCAAGCTGCGCTT...GCTTTCCTGAGCATCTGCTCTTCTGGAATCAGGCTGAGCTCTGAGGACAGGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CCA 90 bp ATGCGCATCCATACTGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTGACAAGGCCACACACTGTTTaGCACGGAGCTGGAAGATCA +
Preference number: 4 (lower is better)
Translates to: MRIHTGGRPANQVHKTLTRPHTV*HGAGRS
Trigger: TGATCTTCCAGCTCCGTGCCAAACAGTGTGTGGCCT...TGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCAGTATGGATGCGCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CCA 90 bp CCCACCTCCATTACCCACACACGGGCCTTAAGGCTCTCTCTCCCCTTCTTGGCCTTTAGGAAATGCCAATaGAAACAGGTGAACGGCCTG +
Preference number: 4 (lower is better)
Translates to: PTSITHTRALRLSLPFLAFRKCQ*KQVNGL
Trigger: CAGGCCGTTCACCTGTTTCCATTGGCATTTCCTAAA...GGCCAAGAAGGGGAGAGAGAGCCTTAAGGCCCGTGTGTGGGTAATGGAGGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039734.12
CDS-3UTR CCA 90 bp GTGGGTTTGGTGGTGCTTCAGAGGTTCTTCGATAATACCTTGACACCGATGGTGTTCTCGATCATGGCCTaGCTGGCCAAGACCCCAGGC +
Preference number: 4 (lower is better)
Translates to: VGLVVLQRFFDNTLTPMVFSIMA*LAKTPG
Trigger: GCCTGGGGTCTTGGCCAGCCAGGCCATGATCGAGAA...CACCATCGGTGTCAAGGTATTATCGAAGAACCTCTGAAGCACCACCAAACCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039734.12
CDS-3UTR CCA 90 bp TGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTGACACTACCATATACTGTAGCCTGCCAGCGACCTaGGACCTGTCAATCCAAGGT +
Preference number: 4 (lower is better)
Translates to: WGKACQPGTQDSDTTIYCSLPAT*DLSIQG
Trigger: ACCTTGGATTGACAGGTCCCAGGTCGCTGGCAGGCT...ACAGTATATGGTAGTGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR TCA 90 bp CTCGATACAGTCTCAGCAGAATTTGAGCCACAGACCAGAGGCCAAGCTGTGAGCGGAGAGGGATGTCACTaGTGTCACCCAAGCTCTGAA +
Preference number: 4 (lower is better)
Translates to: LDTVSAEFEPQTRGQAVSGEGCH*CHPSSE
Trigger: TTCAGAGCTTGGGTGACATCAGTGACATCCCTCTCC...GCTCACAGCTTGGCCTCTGGTCTGTGGCTCAAATTCTGCTGAGACTGTATCGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp CTCGATACAGTCTCAGCAGAATTTGAGCCACAGACCAGAGGCCAAGCTGTGAGCTTGCTCTGGAGAGAATaGAGCTTGGGGAGAGGGATG +
Preference number: 4 (lower is better)
Translates to: LDTVSAEFEPQTRGQAVSLLWRE*SLGRGM
Trigger: CATCCCTCTCCCCAAGCTGCATTCTCTCCAGAGCAA...GCTCACAGCTTGGCCTCTGGTCTGTGGCTCAAATTCTGCTGAGACTGTATCGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp ACACCTGTCCTCAGAGCTCAGCCTGATTCCAGAAGAGCAGATGCTCAGGAAAGCTTGCTCTGGAGAGAATaGAGCTTGGGGAGAGGGATG +
Preference number: 4 (lower is better)
Translates to: TPVLRAQPDSRRADAQESLLWRE*SLGRGM
Trigger: CATCCCTCTCCCCAAGCTGCATTCTCTCCAGAGCAA...GCTTTCCTGAGCATCTGCTCTTCTGGAATCAGGCTGAGCTCTGAGGACAGGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp CGAAGTTACTGTCTTGCCACCGAGGGTCCTCACCAAGAATCTTCTCGATCATGGTGTGCGAAGGCACAGTaGAGCCCGTTCTTCACACAG +
Preference number: 4 (lower is better)
Translates to: RSYCLATEGPHQESSRSWCAKAQ*SPFFTQ
Trigger: CTGTGTGAAGAACGGGCTGCACTGTGCCTTCGCACA...CCATGATCGAGAAGATTCTTGGTGAGGACCCTCGGTGGCAAGACAGTAACTTCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160785.2
CDS-3UTR CCA 90 bp TGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTGACACTACCATATACTGTAAGCGCAGCTTGCTCTaGAGAGAATGCAGCTTGGGG +
Preference number: 4 (lower is better)
Translates to: WGKACQPGTQDSDTTIYCKRSLL*RECSLG
Trigger: CCCCAAGCTGCATTCTCTCCAGAGCAAGCTGCGCTT...ACAGTATATGGTAGTGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CCA 90 bp GGTCCTCACCAAGAATCTTCTCGATCATGGCCTGGCTGGCCAAGACCCCAGGCTTTTAGGAAATGCCAATaGAAACAGGTGAACGGCCTG +
Preference number: 4 (lower is better)
Translates to: GPHQESSRSWPGWPRPQAFRKCQ*KQVNGL
Trigger: CAGGCCGTTCACCTGTTTCCATTGGCATTTCCTAAA...AGCCTGGGGTCTTGGCCAGCCAGGCCATGATCGAGAAGATTCTTGGTGAGGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160785.2
CDS-3UTR CCA 90 bp GTGGGTTTGGTGGTGCTTCAGAGGTTCTTCGATAATACCTTGACACCGATGGTGTGCTGGACGCCAGGCTaGATGCCACACTGGAGCTTA +
Preference number: 4 (lower is better)
Translates to: VGLVVLQRFFDNTLTPMVCWTPG*MPHWSL
Trigger: TAAGCTCCAGTGTGGCATCCAGCCTGGCGTCCAGCA...CACCATCGGTGTCAAGGTATTATCGAAGAACCTCTGAAGCACCACCAAACCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR CAA 72 bp ACCAATTCCTTCACTTCTCTTGCAAGGCACAGGCACTaGGAAGTGGCCACGGATCACATAAGTGCGCGACAG +
Preference number: 4 (lower is better)
Translates to: TNSFTSLARHRH*EVATDHISARQ
Trigger: CTGTCGCGCACTTATGTGATCCGTGGCCACTTCCAAGTGCCTGTGCCTTGCAAGAGAAGTGAAGGAATTGGT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR TCA 90 bp CTCGATACAGTCTCAGCAGAATTTGAGCCACAGACCAGAGGCCAAGCTGTGAGCATTCTTCCCATTGCCTaGTCTTCCTCTTGGCCTCGT +
Preference number: 4 (lower is better)
Translates to: LDTVSAEFEPQTRGQAVSILPIA*SSSWPR
Trigger: ACGAGGCCAAGAGGAAGATCAGGCAATGGGAAGAAT...GCTCACAGCTTGGCCTCTGGTCTGTGGCTCAAATTCTGCTGAGACTGTATCGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp ATGCGCATCCATACTGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTGACACAAGATTCTTCCCATTaGCTGATCTTCCTCTTGGCC +
Preference number: 4 (lower is better)
Translates to: MRIHTGGRPANQVHKTLTQDSSH*LIFLLA
Trigger: GGCCAAGAGGAAGATCAGGCAATGGGAAGAATCTTG...TGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCAGTATGGATGCGCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp GTGGGTTTGGTGGTGCTTCAGAGGTTCTTCGATAATACCTTGACACCGATGGTGATCTCAGGATGGAACTaGTGCTCCGTGCGGGAATGG +
Preference number: 4 (lower is better)
Translates to: VGLVVLQRFFDNTLTPMVISGWN*CSVREW
Trigger: CCATTCCCGCACGGAGCAGCAGTTCCATCCTGAGAT...CACCATCGGTGTCAAGGTATTATCGAAGAACCTCTGAAGCACCACCAAACCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR TCA 90 bp TGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTGACACTACCATATACTGTATTCTTCCCATTGCCTaGTCTTCCTCTTGGCCTCGT +
Preference number: 4 (lower is better)
Translates to: WGKACQPGTQDSDTTIYCILPIA*SSSWPR
Trigger: ACGAGGCCAAGAGGAAGATCAGGCAATGGGAAGAAT...ACAGTATATGGTAGTGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR TCA 90 bp CTATTAAAAGTCTTTGGCAAAGCCATGGGGAAGGAGAACCACTTCGAGGCCTGGGGAGAGGGATGTCACTaGTGTCACCCAAGCTCTGAA +
Preference number: 4 (lower is better)
Translates to: LLKVFGKAMGKENHFEAWGEGCH*CHPSSE
Trigger: TTCAGAGCTTGGGTGACATCAGTGACATCCCTCTCC...CCAGGCCTCGAAGTGGTTCTCCTTCCCCATGGCTTTGCCAAAGACTTTTAATAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CCA 90 bp GTGGGTTTGGTGGTGCTTCAGAGGTTCTTCGATAATACCTTGACACCGATGGTGAGGCCACACACTGTTTaGCACGGAGCTGGAAGATCA +
Preference number: 4 (lower is better)
Translates to: VGLVVLQRFFDNTLTPMVRPHTV*HGAGRS
Trigger: TGATCTTCCAGCTCCGTGCCAAACAGTGTGTGGCCT...CACCATCGGTGTCAAGGTATTATCGAAGAACCTCTGAAGCACCACCAAACCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR TCA 90 bp AGAACAAATGAACACAAAGGCTTCCATAAGTTAATCCACATGCGCATCCATACTAATGGTGACGGGTGCTaGGCCTGCCAGCGACCTGGG +
Preference number: 4 (lower is better)
Translates to: RTNEHKGFHKLIHMRIHTNGDGC*ACQRPG
Trigger: CCCAGGTCGCTGGCAGGCTCAGCACCCGTCACCATT...AGTATGGATGCGCATGTGGATTAACTTATGGAAGCCTTTGTGTTCATTTGTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp AGAACAAATGAACACAAAGGCTTCCATAAGTTAATCCACATGCGCATCCATACTTTGGCCTCGTCTAGCTaGCGCCTGACCCGTGCCAGC +
Preference number: 4 (lower is better)
Translates to: RTNEHKGFHKLIHMRIHTLASSS*RLTRAS
Trigger: GCTGGCACGGGTCAGGCGGCAGCTAGACGAGGCCAA...AGTATGGATGCGCATGTGGATTAACTTATGGAAGCCTTTGTGTTCATTTGTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp TGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTGACACTACCATATACTGTCAAGATTCTTCCCATTaGCTGATCTTCCTCTTGGCC +
Preference number: 4 (lower is better)
Translates to: WGKACQPGTQDSDTTIYCQDSSH*LIFLLA
Trigger: GGCCAAGAGGAAGATCAGGCAATGGGAAGAATCTTG...ACAGTATATGGTAGTGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
3UTR CAA 72 bp CTCAGTCTTATAGCTGCCCAATACGAAGTTACTGTCTaGCCACCGAGGGTCCTCACCAAGAATCTTCTCGAT +
Preference number: 4 (lower is better)
Translates to: LSLIAAQYEVTV*PPRVLTKNLLD
Trigger: ATCGAGAAGATTCTTGGTGAGGACCCTCGGTGGCAAGACAGTAACTTCGTATTGGGCAGCTATAAGACTGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160785.2
CDS-3UTR GCA 90 bp AGAACAAATGAACACAAAGGCTTCCATAAGTTAATCCACATGCGCATCCATACTAGCGCAGGTGGTACTTaGGCTCCGTGTCCCCAGTTG +
Preference number: 4 (lower is better)
Translates to: RTNEHKGFHKLIHMRIHTSAGGT*APCPQL
Trigger: CAACTGGGGACACGGAGCGCAAGTACCACCTGCGCT...AGTATGGATGCGCATGTGGATTAACTTATGGAAGCCTTTGTGTTCATTTGTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039734.12
CDS-3UTR TCA 90 bp AGAACAAATGAACACAAAGGCTTCCATAAGTTAATCCACATGCGCATCCATACTGTTTGGACTTGCACTTaGGGAAGCCGAAGGGCCGGA +
Preference number: 4 (lower is better)
Translates to: RTNEHKGFHKLIHMRIHTVWTCT*GSRRAG
Trigger: TCCGGCCCTTCGGCTTCCTCAAGTGCAAGTCCAAAC...AGTATGGATGCGCATGTGGATTAACTTATGGAAGCCTTTGTGTTCATTTGTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR TCA 90 bp AGAACAAATGAACACAAAGGCTTCCATAAGTTAATCCACATGCGCATCCATACTATGTCACCCAAGCTCTaGAGCCCTGGCAGTGAGGAC +
Preference number: 4 (lower is better)
Translates to: RTNEHKGFHKLIHMRIHTMSPKL*SPGSED
Trigger: GTCCTCACTGCCAGGGCTTCAGAGCTTGGGTGACAT...AGTATGGATGCGCATGTGGATTAACTTATGGAAGCCTTTGTGTTCATTTGTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp AGAACAAATGAACACAAAGGCTTCCATAAGTTAATCCACATGCGCATCCATACTCTGCCGGTCACTGTCTaGCACACGGGCTCTTTCCTT +
Preference number: 4 (lower is better)
Translates to: RTNEHKGFHKLIHMRIHTLPVTV*HTGSFL
Trigger: AAGGAAAGAGCCCGTGTGGCAGACAGTGACCGGCAG...AGTATGGATGCGCATGTGGATTAACTTATGGAAGCCTTTGTGTTCATTTGTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CCA 90 bp AGAACAAATGAACACAAAGGCTTCCATAAGTTAATCCACATGCGCATCCATACTTGCTGGACGCCAGGCTaGATGCCACACTGGAGCTTA +
Preference number: 4 (lower is better)
Translates to: RTNEHKGFHKLIHMRIHTCWTPG*MPHWSL
Trigger: TAAGCTCCAGTGTGGCATCCAGCCTGGCGTCCAGCA...AGTATGGATGCGCATGTGGATTAACTTATGGAAGCCTTTGTGTTCATTTGTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CCA 90 bp AGAACAAATGAACACAAAGGCTTCCATAAGTTAATCCACATGCGCATCCATACTGCAGCTGCTTCACCTTaGCTTCCACCTCTTCTTTCC +
Preference number: 4 (lower is better)
Translates to: RTNEHKGFHKLIHMRIHTAAASP*LPPLLS
Trigger: GGAAAGAAGAGGTGGAAGCCAAGGTGAAGCAGCTGC...AGTATGGATGCGCATGTGGATTAACTTATGGAAGCCTTTGTGTTCATTTGTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR GCA 90 bp AGAACAAATGAACACAAAGGCTTCCATAAGTTAATCCACATGCGCATCCATACTTGGCTGCACTTATGCTaGAAAAACAGGGAGCACTGC +
Preference number: 4 (lower is better)
Translates to: RTNEHKGFHKLIHMRIHTWLHLC*KNREHC
Trigger: GCAGTGCTCCCTGTTTTTGCAGCATAAGTGCAGCCA...AGTATGGATGCGCATGTGGATTAACTTATGGAAGCCTTTGTGTTCATTTGTTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039734.12
CDS GCA 90 bp GGGCACTCAGGGGTACTGGCCGCACATGGTTCGCATAAGACACGGTaGTGGCAGGGCCGCAGGACAGTGCCATGGGCCCGCTCCTGGCAG +
Preference number: 5 (lower is better)
Translates to: GHSGVLAAHGSHKTR*WQGRRTVPWARSWQ
Trigger: CTGCCAGGAGCGGGCCCATGGCACTGTCCTGCGGCCCTGCCAGCACCGTGTCTTATGCGAACCATGTGCGGCCAGTACCCCTGAGTGCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS CCA 90 bp CACTCAGGGGTACTGGCCGCACATGGTTCGCATAAGACACGGTGCTaGCAGGGCCGCAGGACAGTGCCATGGGCCCGCTCCTGGCAGGCC +
Preference number: 5 (lower is better)
Translates to: HSGVLAAHGSHKTRC*QGRRTVPWARSWQA
Trigger: GGCCTGCCAGGAGCGGGCCCATGGCACTGTCCTGCGGCCCTGCCAGCACCGTGTCTTATGCGAACCATGTGCGGCCAGTACCCCTGAGTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS CCA 90 bp ACACGGTGCTGGCAGGGCCGCAGGACAGTGCCATGGGCCCGCTCCTaGCAGGCCACACACTGTTTGGCACGGAGCTGGAAGATCACCCCA +
Preference number: 5 (lower is better)
Translates to: TRCWQGRRTVPWARS*QATHCLARSWKITP
Trigger: TGGGGTGATCTTCCAGCTCCGTGCCAAACAGTGTGTGGCCTGCCAGGAGCGGGCCCATGGCACTGTCCTGCGGCCCTGCCAGCACCGTGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS CCA 90 bp GGTTCGCATAAGACACGGTGCTGGCAGGGCCGCAGGACAGTGCCATaGGCCCGCTCCTGGCAGGCCACACACTGTTTGGCACGGAGCTGG +
Preference number: 5 (lower is better)
Translates to: GSHKTRCWQGRRTVP*ARSWQATHCLARSW
Trigger: CCAGCTCCGTGCCAAACAGTGTGTGGCCTGCCAGGAGCGGGCCCATGGCACTGTCCTGCGGCCCTGCCAGCACCGTGTCTTATGCGAACC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS TCA 90 bp CAAGGATGGCGAGCGGGGCAGGGAGCCCGGAATGGTGACGGGTGCTaGGCCTGCCAGCGACCTGGGACCTGTCAATCCAAGGTCCTGTTC +
Preference number: 5 (lower is better)
Translates to: QGWRAGQGARNGDGC*ACQRPGTCQSKVLF
Trigger: GAACAGGACCTTGGATTGACAGGTCCCAGGTCGCTGGCAGGCTCAGCACCCGTCACCATTCCGGGCTCCCTGCCCCGCTCGCCATCCTTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
ENSMUST00000162498.8
CDS TCA 90 bp AGGACGAGTGCAAGGATGGCGAGCGGGGCAGGGAGCCCGGAATGGTaGCGGGTGCTGAGCCTGCCAGCGACCTGGGACCTGTCAATCCAA +
Preference number: 5 (lower is better)
Translates to: RTSARMASGAGSPEW*RVLSLPATWDLSIQ
Trigger: TTGGATTGACAGGTCCCAGGTCGCTGGCAGGCTCAGCACCCGTCACCATTCCGGGCTCCCTGCCCCGCTCGCCATCCTTGCACTCGTCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
ENSMUST00000162498.8
CDS TCA 90 bp TGGCCGAGGAGACGAGTGGCCCCGACAGGGACTGGGAGAGCGAGCTaGGTGGGGAGGTGGATAGGGATGAGGACGAGTGCAAGGATGGCG +
Preference number: 5 (lower is better)
Translates to: WPRRRVAPTGTGRAS*VGRWIGMRTSARMA
Trigger: CGCCATCCTTGCACTCGTCCTCATCCCTATCCACCTCCCCACTCAGCTCGCTCTCCCAGTCCCTGTCGGGGCCACTCGTCTCCTCGGCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
ENSMUST00000162498.8
CDS GCA 90 bp TGGGAGAGCGAGCTGAGTGGGGAGGTGGATAGGGATGAGGACGAGTaGAAGGATGGCGAGCGGGGCAGGGAGCCCGGAATGGTGACGGGT +
Preference number: 5 (lower is better)
Translates to: WESELSGEVDRDEDE*KDGERGREPGMVTG
Trigger: ACCCGTCACCATTCCGGGCTCCCTGCCCCGCTCGCCATCCTTGCACTCGTCCTCATCCCTATCCACCTCCCCACTCAGCTCGCTCTCCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
ENSMUST00000162498.8
CDS CCA 90 bp CTGCAGGGCTTCCTGAGCCTGAAGCTCCCTGATGTCACACACAGGTaGCCGAAGGTCCAGGGGCCCGTGTGCGAAGGCACAGTGCAGCCC +
Preference number: 5 (lower is better)
Translates to: LQGFLSLKLPDVTHR*PKVQGPVCEGTVQP
Trigger: GGGCTGCACTGTGCCTTCGCACACGGGCCCCTGGACCTTCGGCCACCTGTGTGTGACATCAGGGAGCTTCAGGCTCAGGAAGCCCTGCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039734.12
CDS GCA 90 bp CACATGGTTCGCATAAGACACGGTGCTGGCAGGGCCGCAGGACAGTaGCATGGGCCCGCTCCTGGCAGGCCACACACTGTTTGGCACGGA +
Preference number: 5 (lower is better)
Translates to: HMVRIRHGAGRAAGQ*HGPAPGRPHTVWHG
Trigger: TCCGTGCCAAACAGTGTGTGGCCTGCCAGGAGCGGGCCCATGGCACTGTCCTGCGGCCCTGCCAGCACCGTGTCTTATGCGAACCATGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CAA 90 bp TGTGCCAAGACTGTCCTGGACTCGTGCCTCTGGGCCCCTCTGGATCAGCTGGAGACTGCCCCCACAGTGTaGCCGGCGGGATCCAGTGGA +
Preference number: 5 (lower is better)
Translates to: CAKTVLDSCLWAPLDQLETAPTV*PAGSSG
Trigger: TCCACTGGATCCCGCCGGCAACACTGTGGGGGCAGT...CTCCAGCTGATCCAGAGGGGCCCAGAGGCACGAGTCCAGGACAGTCTTGGCACA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS CCA 90 bp GCAGGACAGTGCCATGGGCCCGCTCCTGGCAGGCCACACACTGTTTaGCACGGAGCTGGAAGATCACCCCATCCACAGCCTCCAAGTCCA +
Preference number: 5 (lower is better)
Translates to: AGQCHGPAPGRPHTV*HGAGRSPHPQPPSP
Trigger: TGGACTTGGAGGCTGTGGATGGGGTGATCTTCCAGCTCCGTGCCAAACAGTGTGTGGCCTGCCAGGAGCGGGCCCATGGCACTGTCCTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS TCA 90 bp CTGCCGCCTGACCCGTGCCAGCTCAGCACTGTTTGGACTTGCACTTaGGGAAGCCGAAGGGCCGGAGTTCAGAATGGGGGATGGGCTAGG +
Preference number: 5 (lower is better)
Translates to: LPPDPCQLSTVWTCT*GSRRAGVQNGGWAR
Trigger: CCTAGCCCATCCCCCATTCTGAACTCCGGCCCTTCGGCTTCCTCAAGTGCAAGTCCAAACAGTGCTGAGCTGGCACGGGTCAGGCGGCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CAA 90 bp GACAGTGGTGGGTCCCAGTTCCTAGACCCATGGCCCCACCTCCATTACCCACACTGCCTGATCTTCCTCTaGGCCTCGTCTAGCTGCCGC +
Preference number: 5 (lower is better)
Translates to: DSGGSQFLDPWPHLHYPHCLIFL*ASSSCR
Trigger: GCGGCAGCTAGACGAGGCCAAGAGGAAGATCAGGCA...GTGTGGGTAATGGAGGTGGGGCCATGGGTCTAGGAACTGGGACCCACCACTGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS TCA 90 bp CGGTGGCCTCATCGTACTTGGAGCAGTATATGTCCGGGCTGTAGTTaGAGGTGCCATCGCGTCGTCGGAGCGGTCTGCGACGACGCTGAT +
Preference number: 5 (lower is better)
Translates to: RWPHRTWSSICPGCS*RCHRVVGAVCDDAD
Trigger: ATCAGCGTCGTCGCAGACCGCTCCGACGACGCGATGGCACCTTCAACTACAGCCCGGACATATACTGCTCCAAGTACGATGAGGCCACCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160785.2
CDS GCA 90 bp ACGGCAGCTCCACTCGTTCACCATAGCCAGGCTCTTCTCAGTGTGTaGAAAGGCACAGAAAGGGCCCCGAGGGCAGTAGCCAGTTTGGCG +
Preference number: 5 (lower is better)
Translates to: TAAPLVHHSQALLSV*KGTERAPRAVASLA
Trigger: CGCCAAACTGGCTACTGCCCTCGGGGCCCTTTCTGTGCCTTTGCACACACTGAGAAGAGCCTGGCTATGGTGAACGAGTGGAGCTGCCGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CAA 90 bp GACAGTGGTGGGTCCCAGTTCCTAGACCCATGGCCCCACCTCCATTACCCACACTGTTTGGACTTGCACTaGAGGAAGCCGAAGGGCCGG +
Preference number: 5 (lower is better)
Translates to: DSGGSQFLDPWPHLHYPHCLDLH*RKPKGR
Trigger: CCGGCCCTTCGGCTTCCTCAAGTGCAAGTCCAAACA...GTGTGGGTAATGGAGGTGGGGCCATGGGTCTAGGAACTGGGACCCACCACTGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CAA 90 bp CCCACCTCCATTACCCACACACGGGCCTTAAGGCTCTCTCTCCCCTTCTTGGCCTGTTTGGACTTGCACTaGAGGAAGCCGAAGGGCCGG +
Preference number: 5 (lower is better)
Translates to: PTSITHTRALRLSLPFLACLDLH*RKPKGR
Trigger: CCGGCCCTTCGGCTTCCTCAAGTGCAAGTCCAAACA...GGCCAAGAAGGGGAGAGAGAGCCTTAAGGCCCGTGTGTGGGTAATGGAGGTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CAA 90 bp TGTGCCAAGACTGTCCTGGACTCGTGCCTCTGGGCCCCTCTGGATCAGCTGGAGAAGTCCAAGCGCAGCTaGCTCTGGAGAGAATGCAGC +
Preference number: 5 (lower is better)
Translates to: CAKTVLDSCLWAPLDQLEKSKRS*LWRECS
Trigger: GCTGCATTCTCTCCAGAGCAAGCTGCGCTTGGACTT...CTCCAGCTGATCCAGAGGGGCCCAGAGGCACGAGTCCAGGACAGTCTTGGCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CAA 90 bp ATGGGAGGGGTCACCTGGACAGATGTCTCCTCCCTAGATTTCCAGGAACAGTCCACTGCCCCCACAGTGTaGCCGGCGGGATCCAGTGGA +
Preference number: 5 (lower is better)
Translates to: MGGVTWTDVSSLDFQEQSTAPTV*PAGSSG
Trigger: TCCACTGGATCCCGCCGGCAACACTGTGGGGGCAGT...GGACTGTTCCTGGAAATCTAGGGAGGAGACATCTGTCCAGGTGACCCCTCCCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CAA 90 bp TGTGCCAAGACTGTCCTGGACTCGTGCCTCTGGGCCCCTCTGGATCAGCTGGAGCCAGCTCAGCACTGTTaGGACTTGCACTTGAGGAAG +
Preference number: 5 (lower is better)
Translates to: CAKTVLDSCLWAPLDQLEPAQHC*DLHLRK
Trigger: CTTCCTCAAGTGCAAGTCCAAACAGTGCTGAGCTGG...CTCCAGCTGATCCAGAGGGGCCCAGAGGCACGAGTCCAGGACAGTCTTGGCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CAA 90 bp TGCAAGGCACAGGCACTTGGAAGTGGCCACGGATCACATAAGTGCGCGACAGAGTGCCTGATCTTCCTCTaGGCCTCGTCTAGCTGCCGC +
Preference number: 5 (lower is better)
Translates to: CKAQALGSGHGSHKCATECLIFL*ASSSCR
Trigger: GCGGCAGCTAGACGAGGCCAAGAGGAAGATCAGGCA...CTCTGTCGCGCACTTATGTGATCCGTGGCCACTTCCAAGTGCCTGTGCCTTGCA
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CAA 90 bp TGTGCCAAGACTGTCCTGGACTCGTGCCTCTGGGCCCCTCTGGATCAGCTGGAGTGCAGCTGCTTCACCTaGGCTTCCACCTCTTCTTTC +
Preference number: 5 (lower is better)
Translates to: CAKTVLDSCLWAPLDQLECSCFT*ASTSSF
Trigger: GAAAGAAGAGGTGGAAGCCAAGGTGAAGCAGCTGCA...CTCCAGCTGATCCAGAGGGGCCCAGAGGCACGAGTCCAGGACAGTCTTGGCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CAA 90 bp CCCACCTCCATTACCCACACACGGGCCTTAAGGCTCTCTCTCCCCTTCTTGGCCGCGAGGTGGTTCTGCTaGCTGTCCTCAGTAGCTTTC +
Preference number: 5 (lower is better)
Translates to: PTSITHTRALRLSLPFLAARWFC*LSSVAF
Trigger: GAAAGCTACTGAGGACAGCAAGCAGAACCACCTCGC...GGCCAAGAAGGGGAGAGAGAGCCTTAAGGCCCGTGTGTGGGTAATGGAGGTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS GCA 90 bp CCTGGCAGTGAGGACAAACCCAGGCCCTCTAATTCTTCCTGCAGCTaGTTCACCTTGGCTTCCACCTCTTCTTTCCTCTGCAGGGCCAGC +
Preference number: 5 (lower is better)
Translates to: PGSEDKPRPSNSSCS*FTLASTSSFLCRAS
Trigger: GCTGGCCCTGCAGAGGAAAGAAGAGGTGGAAGCCAAGGTGAAGCAGCTGCAGGAAGAATTAGAGGGCCTGGGTTTGTCCTCACTGCCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CAA 90 bp TGCAAGGCACAGGCACTTGGAAGTGGCCACGGATCACATAAGTGCGCGACAGAGCAGGCCACACACTGTTaGGCACGGAGCTGGAAGATC +
Preference number: 5 (lower is better)
Translates to: CKAQALGSGHGSHKCATEQATHC*ARSWKI
Trigger: GATCTTCCAGCTCCGTGCCAAACAGTGTGTGGCCTG...CTCTGTCGCGCACTTATGTGATCCGTGGCCACTTCCAAGTGCCTGTGCCTTGCA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS TCA 90 bp GCAGCTTGCTCTGGAGAGAATGCAGCTTGGGGAGAGGGATGTCACTaGTGTCACCCAAGCTCTGAAGCCCTGGCAGTGAGGACAAACCCA +
Preference number: 5 (lower is better)
Translates to: AACSGENAAWGEGCH*CHPSSEALAVRTNP
Trigger: TGGGTTTGTCCTCACTGCCAGGGCTTCAGAGCTTGGGTGACATCAGTGACATCCCTCTCCCCAAGCTGCATTCTCTCCAGAGCAAGCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS CCA 90 bp AAGATCACCCCATCCACAGCCTCCAAGTCCAAGCGCAGCTTGCTCTaGAGAGAATGCAGCTTGGGGAGAGGGATGTCACTGATGTCACCC +
Preference number: 5 (lower is better)
Translates to: KITPSTASKSKRSLL*RECSLGRGMSLMSP
Trigger: GGGTGACATCAGTGACATCCCTCTCCCCAAGCTGCATTCTCTCCAGAGCAAGCTGCGCTTGGACTTGGAGGCTGTGGATGGGGTGATCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CAA 90 bp ATGCGCATCCATACTGGGGGAAGGCCTGCCAACCAGGTACACAAGACTCTGACATGTTTGGACTTGCACTaGAGGAAGCCGAAGGGCCGG +
Preference number: 5 (lower is better)
Translates to: MRIHTGGRPANQVHKTLTCLDLH*RKPKGR
Trigger: CCGGCCCTTCGGCTTCCTCAAGTGCAAGTCCAAACA...TGTCAGAGTCTTGTGTACCTGGTTGGCAGGCCTTCCCCCAGTATGGATGCGCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CAA 90 bp CCCACCTCCATTACCCACACACGGGCCTTAAGGCTCTCTCTCCCCTTCTTGGCCAGGGCAGTAGCCAGTTaGGCGCATATCGTTGCATTT +
Preference number: 5 (lower is better)
Translates to: PTSITHTRALRLSLPFLARAVAS*AHIVAF
Trigger: AAATGCAACGATATGCGCCAAACTGGCTACTGCCCT...GGCCAAGAAGGGGAGAGAGAGCCTTAAGGCCCGTGTGTGGGTAATGGAGGTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS TCA 90 bp GAATGCAGCTTGGGGAGAGGGATGTCACTGATGTCACCCAAGCTCTaGAGCCCTGGCAGTGAGGACAAACCCAGGCCCTCTAATTCTTCC +
Preference number: 5 (lower is better)
Translates to: ECSLGRGMSLMSPKL*SPGSEDKPRPSNSS
Trigger: GGAAGAATTAGAGGGCCTGGGTTTGTCCTCACTGCCAGGGCTTCAGAGCTTGGGTGACATCAGTGACATCCCTCTCCCCAAGCTGCATTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS TCA 90 bp GGGGGAGTCTTTCCTTTTGGCACTTCCAGGCTGGCTGCTATAAGCTaGGGTGCTGTTGGAACTGAGATCACGGCAGCTCCACTCGTTCAC +
Preference number: 5 (lower is better)
Translates to: GGVFPFGTSRLAAIS*GAVGTEITAAPLVH
Trigger: GTGAACGAGTGGAGCTGCCGTGATCTCAGTTCCAACAGCACCTCAGCTTATAGCAGCCAGCCTGGAAGTGCCAAAAGGAAAGACTCCCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS GCA 90 bp CAAGATTCTTCCCATTGCCTGATCTTCCTCTTGGCCTCGTCTAGCTaGCGCCTGACCCGTGCCAGCTCAGCACTGTTTGGACTTGCACTT +
Preference number: 5 (lower is better)
Translates to: QDSSHCLIFLLASSS*RLTRASSALFGLAL
Trigger: AAGTGCAAGTCCAAACAGTGCTGAGCTGGCACGGGTCAGGCGGCAGCTAGACGAGGCCAAGAGGAAGATCAGGCAATGGGAAGAATCTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CAA 90 bp GGATACCTACCCTGTTCTAGGTCTGCCACCATGGGAGGGGTCACCTGGACAGATCCAGCTCAGCACTGTTaGGACTTGCACTTGAGGAAG +
Preference number: 5 (lower is better)
Translates to: GYLPCSRSATMGGVTWTDPAQHC*DLHLRK
Trigger: CTTCCTCAAGTGCAAGTCCAAACAGTGCTGAGCTGG...ATCTGTCCAGGTGACCCCTCCCATGGTGGCAGACCTAGAACAGGGTAGGTATCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CAA 90 bp GGATACCTACCCTGTTCTAGGTCTGCCACCATGGGAGGGGTCACCTGGACAGATTGCAGCTGCTTCACCTaGGCTTCCACCTCTTCTTTC +
Preference number: 5 (lower is better)
Translates to: GYLPCSRSATMGGVTWTDCSCFT*ASTSSF
Trigger: GAAAGAAGAGGTGGAAGCCAAGGTGAAGCAGCTGCA...ATCTGTCCAGGTGACCCCTCCCATGGTGGCAGACCTAGAACAGGGTAGGTATCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CAA 90 bp ACACCTGTCCTCAGAGCTCAGCCTGATTCCAGAAGAGCAGATGCTCAGGAAAGCCAGGCCACACACTGTTaGGCACGGAGCTGGAAGATC +
Preference number: 5 (lower is better)
Translates to: TPVLRAQPDSRRADAQESQATHC*ARSWKI
Trigger: GATCTTCCAGCTCCGTGCCAAACAGTGTGTGGCCTG...GCTTTCCTGAGCATCTGCTCTTCTGGAATCAGGCTGAGCTCTGAGGACAGGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CAA 90 bp ACACCTGTCCTCAGAGCTCAGCCTGATTCCAGAAGAGCAGATGCTCAGGAAAGCGGGGAGTCTTTCCTTTaGGCACTTCCAGGCTGGCTG +
Preference number: 5 (lower is better)
Translates to: TPVLRAQPDSRRADAQESGESFL*ALPGWL
Trigger: CAGCCAGCCTGGAAGTGCCAAAAGGAAAGACTCCCC...GCTTTCCTGAGCATCTGCTCTTCTGGAATCAGGCTGAGCTCTGAGGACAGGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CAA 90 bp ATGGGAGGGGTCACCTGGACAGATGTCTCCTCCCTAGATTTCCAGGAACAGTCCGCGAGGTGGTTCTGCTaGCTGTCCTCAGTAGCTTTC +
Preference number: 5 (lower is better)
Translates to: MGGVTWTDVSSLDFQEQSARWFC*LSSVAF
Trigger: GAAAGCTACTGAGGACAGCAAGCAGAACCACCTCGC...GGACTGTTCCTGGAAATCTAGGGAGGAGACATCTGTCCAGGTGACCCCTCCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS CCA 90 bp GAGAACACAGCGAGGTGGTTCTGCTTGCTGTCCTCAGTAGCTTTCTaGCTTCCTTCAGAGGGGGAGTCTTTCCTTTTGGCACTTCCAGGC +
Preference number: 5 (lower is better)
Translates to: ENTARWFCLLSSVAF*LPSEGESFLLALPG
Trigger: GCCTGGAAGTGCCAAAAGGAAAGACTCCCCCTCTGAAGGAAGCCAGAAAGCTACTGAGGACAGCAAGCAGAACCACCTCGCTGTGTTCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CAA 90 bp CTATTAAAAGTCTTTGGCAAAGCCATGGGGAAGGAGAACCACTTCGAGGCCTGGTGCCTGATCTTCCTCTaGGCCTCGTCTAGCTGCCGC +
Preference number: 5 (lower is better)
Translates to: LLKVFGKAMGKENHFEAWCLIFL*ASSSCR
Trigger: GCGGCAGCTAGACGAGGCCAAGAGGAAGATCAGGCA...CCAGGCCTCGAAGTGGTTCTCCTTCCCCATGGCTTTGCCAAAGACTTTTAATAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CAA 90 bp ACACCTGTCCTCAGAGCTCAGCCTGATTCCAGAAGAGCAGATGCTCAGGAAAGCGATACCTGTAGTGGGTaGGTTTCTCTGTCTGCGGGG +
Preference number: 5 (lower is better)
Translates to: TPVLRAQPDSRRADAQESDTCSG*VSLSAG
Trigger: CCCCGCAGACAGAGAAACCAACCCACTACAGGTATC...GCTTTCCTGAGCATCTGCTCTTCTGGAATCAGGCTGAGCTCTGAGGACAGGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039734.12
CDS-3UTR CAA 90 bp GGATACCTACCCTGTTCTAGGTCTGCCACCATGGGAGGGGTCACCTGGACAGATAGGGCAGTAGCCAGTTaGGCGCATATCGTTGCATTT +
Preference number: 5 (lower is better)
Translates to: GYLPCSRSATMGGVTWTDRAVAS*AHIVAF
Trigger: AAATGCAACGATATGCGCCAAACTGGCTACTGCCCT...ATCTGTCCAGGTGACCCCTCCCATGGTGGCAGACCTAGAACAGGGTAGGTATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS GCA 90 bp TCTCGTGAATACACGTGCCTGTCTTGTAGTAGCGCAGGTGGTACTTaGGCTCCGTGTCCCCAGTTGTTCGATGCAGGTAAGGGCATTCAT +
Preference number: 5 (lower is better)
Translates to: SREYTCLSCSSAGGT*APCPQLFDAGKGIH
Trigger: ATGAATGCCCTTACCTGCATCGAACAACTGGGGACACGGAGCGCAAGTACCACCTGCGCTACTACAAGACAGGCACGTGTATTCACGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160785.2
CDS-3UTR CAA 90 bp CTATTAAAAGTCTTTGGCAAAGCCATGGGGAAGGAGAACCACTTCGAGGCCTGGCAGGCCACACACTGTTaGGCACGGAGCTGGAAGATC +
Preference number: 5 (lower is better)
Translates to: LLKVFGKAMGKENHFEAWQATHC*ARSWKI
Trigger: GATCTTCCAGCTCCGTGCCAAACAGTGTGTGGCCTG...CCAGGCCTCGAAGTGGTTCTCCTTCCCCATGGCTTTGCCAAAGACTTTTAATAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CAA 90 bp GTGGGTTTGGTGGTGCTTCAGAGGTTCTTCGATAATACCTTGACACCGATGGTGAAGTCCAAGCGCAGCTaGCTCTGGAGAGAATGCAGC +
Preference number: 5 (lower is better)
Translates to: VGLVVLQRFFDNTLTPMVKSKRS*LWRECS
Trigger: GCTGCATTCTCTCCAGAGCAAGCTGCGCTTGGACTT...CACCATCGGTGTCAAGGTATTATCGAAGAACCTCTGAAGCACCACCAAACCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CAA 90 bp AGAACAAATGAACACAAAGGCTTCCATAAGTTAATCCACATGCGCATCCATACTGGGGAGTCTTTCCTTTaGGCACTTCCAGGCTGGCTG +
Preference number: 5 (lower is better)
Translates to: RTNEHKGFHKLIHMRIHTGESFL*ALPGWL
Trigger: CAGCCAGCCTGGAAGTGCCAAAAGGAAAGACTCCCC...AGTATGGATGCGCATGTGGATTAACTTATGGAAGCCTTTGTGTTCATTTGTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS-3UTR CAA 90 bp AGAACAAATGAACACAAAGGCTTCCATAAGTTAATCCACATGCGCATCCATACTAAGTCCAAGCGCAGCTaGCTCTGGAGAGAATGCAGC +
Preference number: 5 (lower is better)
Translates to: RTNEHKGFHKLIHMRIHTKSKRS*LWRECS
Trigger: GCTGCATTCTCTCCAGAGCAAGCTGCGCTTGGACTT...AGTATGGATGCGCATGTGGATTAACTTATGGAAGCCTTTGTGTTCATTTGTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS TCA 72 bp CGAGCGGGGCAGGGAGCCCGGAATGGTGACGGGTGCTaGGCCTGCCAGCGACCTGGGACCTGTCAATCCAAG +
Preference number: 6 (lower is better)
Translates to: RAGQGARNGDGC*ACQRPGTCQSK
Trigger: CTTGGATTGACAGGTCCCAGGTCGCTGGCAGGCTCAGCACCCGTCACCATTCCGGGCTCCCTGCCCCGCTCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
ENSMUST00000162498.8
CDS GCA 72 bp GGGGTACTGGCCGCACATGGTTCGCATAAGACACGGTaGTGGCAGGGCCGCAGGACAGTGCCATGGGCCCGC +
Preference number: 6 (lower is better)
Translates to: GVLAAHGSHKTR*WQGRRTVPWAR
Trigger: GCGGGCCCATGGCACTGTCCTGCGGCCCTGCCAGCACCGTGTCTTATGCGAACCATGTGCGGCCAGTACCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS CCA 72 bp TGGCAGGGCCGCAGGACAGTGCCATGGGCCCGCTCCTaGCAGGCCACACACTGTTTGGCACGGAGCTGGAAG +
Preference number: 6 (lower is better)
Translates to: WQGRRTVPWARS*QATHCLARSWK
Trigger: CTTCCAGCTCCGTGCCAAACAGTGTGTGGCCTGCCAGGAGCGGGCCCATGGCACTGTCCTGCGGCCCTGCCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS GCA 72 bp CGCATAAGACACGGTGCTGGCAGGGCCGCAGGACAGTaGCATGGGCCCGCTCCTGGCAGGCCACACACTGTT +
Preference number: 6 (lower is better)
Translates to: RIRHGAGRAAGQ*HGPAPGRPHTV
Trigger: AACAGTGTGTGGCCTGCCAGGAGCGGGCCCATGGCACTGTCCTGCGGCCCTGCCAGCACCGTGTCTTATGCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS GCA 72 bp GGCCGAAGGTCCAGGGGCCCGTGTGCGAAGGCACAGTaGAGCCCGTTCTTCACACAGTGGCCCCGTGCATCT +
Preference number: 6 (lower is better)
Translates to: GRRSRGPCAKAQ*SPFFTQWPRAS
Trigger: AGATGCACGGGGCCACTGTGTGAAGAACGGGCTGCACTGTGCCTTCGCACACGGGCCCCTGGACCTTCGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160785.2
CDS GCA 72 bp GGAGCTGCCCGAGCCAGTGCTGGACGCCAGGCTGGATaGCACACTGGAGCTTATGCTGTGGGCCAGTGGGTG +
Preference number: 6 (lower is better)
Translates to: GAARASAGRQAG*HTGAYAVGQWV
Trigger: CACCCACTGGCCCACAGCATAAGCTCCAGTGTGGCATCCAGCCTGGCGTCCAGCACTGGCTCGGGCAGCTCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS CCA 72 bp GTACTGGCCGCACATGGTTCGCATAAGACACGGTGCTaGCAGGGCCGCAGGACAGTGCCATGGGCCCGCTCC +
Preference number: 6 (lower is better)
Translates to: VLAAHGSHKTRC*QGRRTVPWARS
Trigger: GGAGCGGGCCCATGGCACTGTCCTGCGGCCCTGCCAGCACCGTGTCTTATGCGAACCATGTGCGGCCAGTAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS CCA 72 bp GGGAGGAGCTGCCCGAGCCAGTGCTGGACGCCAGGCTaGATGCCACACTGGAGCTTATGCTGTGGGCCAGTG +
Preference number: 6 (lower is better)
Translates to: GRSCPSQCWTPG*MPHWSLCCGPV
Trigger: CACTGGCCCACAGCATAAGCTCCAGTGTGGCATCCAGCCTGGCGTCCAGCACTGGCTCGGGCAGCTCCTCCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS GCA 72 bp GAGCTGAGTGGGGAGGTGGATAGGGATGAGGACGAGTaGAAGGATGGCGAGCGGGGCAGGGAGCCCGGAATG +
Preference number: 6 (lower is better)
Translates to: ELSGEVDRDEDE*KDGERGREPGM
Trigger: CATTCCGGGCTCCCTGCCCCGCTCGCCATCCTTGCACTCGTCCTCATCCCTATCCACCTCCCCACTCAGCTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
ENSMUST00000162498.8
CDS CAA 72 bp GTGCCATGGGCCCGCTCCTGGCAGGCCACACACTGTTaGGCACGGAGCTGGAAGATCACCCCATCCACAGCC +
Preference number: 6 (lower is better)
Translates to: VPWARSWQATHC*ARSWKITPSTA
Trigger: GGCTGTGGATGGGGTGATCTTCCAGCTCCGTGCCAAACAGTGTGTGGCCTGCCAGGAGCGGGCCCATGGCAC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS CAA 90 bp CGCAGGACAGTGCCATGGGCCCGCTCCTGGCAGGCCACACACTGTTaGGCACGGAGCTGGAAGATCACCCCATCCACAGCCTCCAAGTCC +
Preference number: 6 (lower is better)
Translates to: RRTVPWARSWQATHC*ARSWKITPSTASKS
Trigger: GGACTTGGAGGCTGTGGATGGGGTGATCTTCCAGCTCCGTGCCAAACAGTGTGTGGCCTGCCAGGAGCGGGCCCATGGCACTGTCCTGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS TCA 72 bp AGACGAGTGGCCCCGACAGGGACTGGGAGAGCGAGCTaGGTGGGGAGGTGGATAGGGATGAGGACGAGTGCA +
Preference number: 6 (lower is better)
Translates to: RRVAPTGTGRAS*VGRWIGMRTSA
Trigger: TGCACTCGTCCTCATCCCTATCCACCTCCCCACTCAGCTCGCTCTCCCAGTCCCTGTCGGGGCCACTCGTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
ENSMUST00000162498.8
CDS CCA 72 bp TGCCATGGGCCCGCTCCTGGCAGGCCACACACTGTTTaGCACGGAGCTGGAAGATCACCCCATCCACAGCCT +
Preference number: 6 (lower is better)
Translates to: CHGPAPGRPHTV*HGAGRSPHPQP
Trigger: AGGCTGTGGATGGGGTGATCTTCCAGCTCCGTGCCAAACAGTGTGTGGCCTGCCAGGAGCGGGCCCATGGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS CAA 90 bp CTAAGACGAAGATCTAAGGCAGAACCTATGACTGCCCCCACAGTGTaGCCGGCGGGATCCAGTGGAAGGGCACGGGCAGGGAGGGTAGGC +
Preference number: 6 (lower is better)
Translates to: LRRRSKAEPMTAPTV*PAGSSGRARAGRVG
Trigger: GCCTACCCTCCCTGCCCGTGCCCTTCCACTGGATCCCGCCGGCAACACTGTGGGGGCAGTCATAGGTTCTGCCTTAGATCTTCGTCTTAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS TCA 72 bp GACCCGTGCCAGCTCAGCACTGTTTGGACTTGCACTTaGGGAAGCCGAAGGGCCGGAGTTCAGAATGGGGGA +
Preference number: 6 (lower is better)
Translates to: DPCQLSTVWTCT*GSRRAGVQNGG
Trigger: TCCCCCATTCTGAACTCCGGCCCTTCGGCTTCCTCAAGTGCAAGTCCAAACAGTGCTGAGCTGGCACGGGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS GCA 72 bp TCCCATTGCCTGATCTTCCTCTTGGCCTCGTCTAGCTaGCGCCTGACCCGTGCCAGCTCAGCACTGTTTGGA +
Preference number: 6 (lower is better)
Translates to: SHCLIFLLASSS*RLTRASSALFG
Trigger: TCCAAACAGTGCTGAGCTGGCACGGGTCAGGCGGCAGCTAGACGAGGCCAAGAGGAAGATCAGGCAATGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS GCA 72 bp CCACTCGTTCACCATAGCCAGGCTCTTCTCAGTGTGTaGAAAGGCACAGAAAGGGCCCCGAGGGCAGTAGCC +
Preference number: 6 (lower is better)
Translates to: PLVHHSQALLSV*KGTERAPRAVA
Trigger: GGCTACTGCCCTCGGGGCCCTTTCTGTGCCTTTGCACACACTGAGAAGAGCCTGGCTATGGTGAACGAGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS CAA 72 bp TGCTGCCAAGATTCTTCCCATTGCCTGATCTTCCTCTaGGCCTCGTCTAGCTGCCGCCTGACCCGTGCCAGC +
Preference number: 6 (lower is better)
Translates to: CCQDSSHCLIFL*ASSSCRLTRAS
Trigger: GCTGGCACGGGTCAGGCGGCAGCTAGACGAGGCCAAGAGGAAGATCAGGCAATGGGAAGAATCTTGGCAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS CAA 90 bp TGCTTCACTTGCTGCCAAGATTCTTCCCATTGCCTGATCTTCCTCTaGGCCTCGTCTAGCTGCCGCCTGACCCGTGCCAGCTCAGCACTG +
Preference number: 6 (lower is better)
Translates to: CFTCCQDSSHCLIFL*ASSSCRLTRASSAL
Trigger: CAGTGCTGAGCTGGCACGGGTCAGGCGGCAGCTAGACGAGGCCAAGAGGAAGATCAGGCAATGGGAAGAATCTTGGCAGCAAGTGAAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS TCA 72 bp GTGCCATCGCGTCGTCGGAGCGGTCTGCGACGACGCTaGTTTAGGAAATGCCAATGGAAACAGGTGAACGGC +
Preference number: 6 (lower is better)
Translates to: VPSRRRSGLRRR*FRKCQWKQVNG
Trigger: GCCGTTCACCTGTTTCCATTGGCATTTCCTAAATCAGCGTCGTCGCAGACCGCTCCGACGACGCGATGGCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160785.2
CDS TCA 72 bp CATCGTACTTGGAGCAGTATATGTCCGGGCTGTAGTTaGAGGTGCCATCGCGTCGTCGGAGCGGTCTGCGAC +
Preference number: 6 (lower is better)
Translates to: HRTWSSICPGCS*RCHRVVGAVCD
Trigger: GTCGCAGACCGCTCCGACGACGCGATGGCACCTTCAACTACAGCCCGGACATATACTGCTCCAAGTACGATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160785.2
CDS TCA 72 bp ACTGGAGCTTATGCTGTGGGCCAGTGGGTGAGCCACTaGGAACACAGCGAGGTGGTTCTGCTTGCTGTCCTC +
Preference number: 6 (lower is better)
Translates to: TGAYAVGQWVSH*EHSEVVLLAVL
Trigger: GAGGACAGCAAGCAGAACCACCTCGCTGTGTTCTCAGTGGCTCACCCACTGGCCCACAGCATAAGCTCCAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS TCA 72 bp GATGCCACACTGGAGCTTATGCTGTGGGCCAGTGGGTaGGCCACTGAGAACACAGCGAGGTGGTTCTGCTTG +
Preference number: 6 (lower is better)
Translates to: DATLELMLWASG*ATENTARWFCL
Trigger: CAAGCAGAACCACCTCGCTGTGTTCTCAGTGGCTCACCCACTGGCCCACAGCATAAGCTCCAGTGTGGCATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS GCA 72 bp TCACCCCATCCACAGCCTCCAAGTCCAAGCGCAGCTTaGTCTGGAGAGAATGCAGCTTGGGGAGAGGGATGT +
Preference number: 6 (lower is better)
Translates to: SPHPQPPSPSAA*SGENAAWGEGC
Trigger: ACATCCCTCTCCCCAAGCTGCATTCTCTCCAGAGCAAGCTGCGCTTGGACTTGGAGGCTGTGGATGGGGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS CCA 72 bp CCATCCACAGCCTCCAAGTCCAAGCGCAGCTTGCTCTaGAGAGAATGCAGCTTGGGGAGAGGGATGTCACTG +
Preference number: 6 (lower is better)
Translates to: PSTASKSKRSLL*RECSLGRGMSL
Trigger: CAGTGACATCCCTCTCCCCAAGCTGCATTCTCTCCAGAGCAAGCTGCGCTTGGACTTGGAGGCTGTGGATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS CCA 72 bp GGTAAGGGCATTCATCACCATCGGGACACAGGCCGGTaGCCTCATCGTACTTGGAGCAGTATATGTCCGGGC +
Preference number: 6 (lower is better)
Translates to: GKGIHHHRDTGR*PHRTWSSICPG
Trigger: GCCCGGACATATACTGCTCCAAGTACGATGAGGCCACCGGCCTGTGTCCCGATGGTGATGAATGCCCTTACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160785.2
CDS CAA 72 bp ATCACCCCATCCACAGCCTCCAAGTCCAAGCGCAGCTaGCTCTGGAGAGAATGCAGCTTGGGGAGAGGGATG +
Preference number: 6 (lower is better)
Translates to: ITPSTASKSKRS*LWRECSLGRGM
Trigger: CATCCCTCTCCCCAAGCTGCATTCTCTCCAGAGCAAGCTGCGCTTGGACTTGGAGGCTGTGGATGGGGTGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS CAA 90 bp CTGTCTTGTAGTAGCGCAGGTGGTACTTGCGCTCCGTGTCCCCAGTaGTTCGATGCAGGTAAGGGCATTCATCACCATCGGGACACAGGC +
Preference number: 6 (lower is better)
Translates to: LSCSSAGGTCAPCPQ*FDAGKGIHHHRDTG
Trigger: GCCTGTGTCCCGATGGTGATGAATGCCCTTACCTGCATCGAACAACTGGGGACACGGAGCGCAAGTACCACCTGCGCTACTACAAGACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160785.2
CDS TCA 72 bp TCTGGAGAGAATGCAGCTTGGGGAGAGGGATGTCACTaGTGTCACCCAAGCTCTGAAGCCCTGGCAGTGAGG +
Preference number: 6 (lower is better)
Translates to: SGENAAWGEGCH*CHPSSEALAVR
Trigger: CCTCACTGCCAGGGCTTCAGAGCTTGGGTGACATCAGTGACATCCCTCTCCCCAAGCTGCATTCTCTCCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS GCA 72 bp GGCACAGTGCAGCCCGTTCTTCACACAGTGGCCCCGTaGATCTGTCTCGTGAATACACGTGCCTGTCTTGTA +
Preference number: 6 (lower is better)
Translates to: GTVQPVLHTVAP*ICLVNTRACLV
Trigger: TACAAGACAGGCACGTGTATTCACGAGACAGATGCACGGGGCCACTGTGTGAAGAACGGGCTGCACTGTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160785.2
CDS CAA 72 bp AGTAGCGCAGGTGGTACTTGCGCTCCGTGTCCCCAGTaGTTCGATGCAGGTAAGGGCATTCATCACCATCGG +
Preference number: 6 (lower is better)
Translates to: SSAGGTCAPCPQ*FDAGKGIHHHR
Trigger: CCGATGGTGATGAATGCCCTTACCTGCATCGAACAACTGGGGACACGGAGCGCAAGTACCACCTGCGCTACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160785.2
CDS GCA 72 bp TACACGTGCCTGTCTTGTAGTAGCGCAGGTGGTACTTaGGCTCCGTGTCCCCAGTTGTTCGATGCAGGTAAG +
Preference number: 6 (lower is better)
Translates to: YTCLSCSSAGGT*APCPQLFDAGK
Trigger: CTTACCTGCATCGAACAACTGGGGACACGGAGCGCAAGTACCACCTGCGCTACTACAAGACAGGCACGTGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160785.2
CDS CAA 72 bp AAGTCCAAGCGCAGCTTGCTCTGGAGAGAATGCAGCTaGGGGAGAGGGATGTCACTGATGTCACCCAAGCTC +
Preference number: 6 (lower is better)
Translates to: KSKRSLLWRECS*GRGMSLMSPKL
Trigger: GAGCTTGGGTGACATCAGTGACATCCCTCTCCCCAAGCTGCATTCTCTCCAGAGCAAGCTGCGCTTGGACTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015271.12
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS TCA 72 bp TTTCCTTTTGGCACTTCCAGGCTGGCTGCTATAAGCTaGGGTGCTGTTGGAACTGAGATCACGGCAGCTCCA +
Preference number: 6 (lower is better)
Translates to: FPFGTSRLAAIS*GAVGTEITAAP
Trigger: TGGAGCTGCCGTGATCTCAGTTCCAACAGCACCTCAGCTTATAGCAGCCAGCCTGGAAGTGCCAAAAGGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS CCA 72 bp AGGAAATGCCAATGGAAACAGGTGAACGGCCTGTGCTaGCTGCACTTATGCTGCAAAAACAGGGAGCACTGC +
Preference number: 6 (lower is better)
Translates to: RKCQWKQVNGLC*LHLCCKNREHC
Trigger: GCAGTGCTCCCTGTTTTTGCAGCATAAGTGCAGCCAGCACAGGCCGTTCACCTGTTTCCATTGGCATTTCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160785.2
CDS CAA 90 bp AGTGTGTGCAAAGGCACAGAAAGGGCCCCGAGGGCAGTAGCCAGTTaGGCGCATATCGTTGCATTTTGTAGATTTGTAGATCTCAGGATG +
Preference number: 6 (lower is better)
Translates to: SVCKGTERAPRAVAS*AHIVAFCRFVDLRM
Trigger: CATCCTGAGATCTACAAATCTACAAAATGCAACGATATGCGCCAAACTGGCTACTGCCCTCGGGGCCCTTTCTGTGCCTTTGCACACACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8
CDS TCA 72 bp GACGACGCTGATTTAGGAAATGCCAATGGAAACAGGTaGACGGCCTGTGCTGGCTGCACTTATGCTGCAAAA +
Preference number: 6 (lower is better)
Translates to: DDADLGNANGNR*TACAGCTYAAK
Trigger: TTTTGCAGCATAAGTGCAGCCAGCACAGGCCGTTCACCTGTTTCCATTGGCATTTCCTAAATCAGCGTCGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160785.2
CDS GCA 72 bp TTTAGGAAATGCCAATGGAAACAGGTGAACGGCCTGTaGTGGCTGCACTTATGCTGCAAAAACAGGGAGCAC +
Preference number: 6 (lower is better)
Translates to: FRKCQWKQVNGL*WLHLCCKNREH
Trigger: GTGCTCCCTGTTTTTGCAGCATAAGTGCAGCCAGCACAGGCCGTTCACCTGTTTCCATTGGCATTTCCTAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160785.2
CDS CAA 72 bp AAAGGCACAGAAAGGGCCCCGAGGGCAGTAGCCAGTTaGGCGCATATCGTTGCATTTTGTAGATTTGTAGAT +
Preference number: 6 (lower is better)
Translates to: KGTERAPRAVAS*AHIVAFCRFVD
Trigger: ATCTACAAATCTACAAAATGCAACGATATGCGCCAAACTGGCTACTGCCCTCGGGGCCCTTTCTGTGCCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039734.12
ENSMUST00000160896.8