Pregenerated sensors for UNC50 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026111Ensembl transcript IDs: ENSMUST00000027285.13, ENSMUST00000114925.10, ENSMUST00000118059.3, ENSMUST00000144617.8, ENSMUST00000193713.2, ENSMUST00000193979.6
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | GACAGACTGTTCATTTTGCCAACAAGATGGTCTGTGTaGTCCAACACTTACTGTACCCTTGATATTTTATAT | + |
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Preference number: 3 (lower is better) Translates to: DRLFILPTRWSV*SNTYCTLDILY Trigger: ATATAAAATATCAAGGGTACAGTAAGTGTTGGATCACACAGACCATCTTGTTGGCAAAATGAACAGTCTGTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027285.13 |
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| CDS-3UTR GCA 90 bp | TACAGATTTACAAGAACTCATCCCTTCCCAACACCAGACAGTTTCTCTAGGATGTTTGCTCCAGCCGTGTaGCTTGCTGCATCCCTGGAA | + |
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Preference number: 4 (lower is better) Translates to: YRFTRTHPFPTPDSFSRMFAPAV*LAASLE Trigger: TTCCAGGGATGCAGCAAGGCACACGGCTGGAGCAAA...CATCCTAGAGAAACTGTCTGGTGTTGGGAAGGGATGAGTTCTTGTAAATCTGTA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 |
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| CDS-3UTR GCA 90 bp | CAGACTGTTCATTTTGCCAACAAGATGGTCTGTGTGATCCAACACTTACTGTACAAAGTTCCATCCCAGTaGCAGCGACAGCCCGTACAG | + |
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Preference number: 4 (lower is better) Translates to: QTVHFANKMVCVIQHLLYKVPSQ*QRQPVQ Trigger: CTGTACGGGCTGTCGCTGGCACTGGGATGGAACTTT...GTACAGTAAGTGTTGGATCACACAGACCATCTTGTTGGCAAAATGAACAGTCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027285.13 |
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| CDS-3UTR CCA 90 bp | GACTGTTCATTTTGCCAACAAGATGGTCTGTGTGATCCAACACTTACTGTACCCAGGCAGGGTCATCTCTaGCCCACTGGTCCTTTGTTT | + |
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Preference number: 4 (lower is better) Translates to: DCSFCQQDGLCDPTLTVPRQGHL*PTGPLF Trigger: AAACAAAGGACCAGTGGGCCAGAGATGACCCTGCCT...GGGTACAGTAAGTGTTGGATCACACAGACCATCTTGTTGGCAAAATGAACAGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027285.13 |
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| CDS-3UTR GCA 90 bp | ACAGACTGTTCATTTTGCCAACAAGATGGTCTGTGTGATCCAACACTTACTGTATTTGCTCCAGCCGTGTaGCTTGCTGCATCCCTGGAA | + |
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Preference number: 4 (lower is better) Translates to: TDCSFCQQDGLCDPTLTVFAPAV*LAASLE Trigger: TTCCAGGGATGCAGCAAGGCACACGGCTGGAGCAAA...TACAGTAAGTGTTGGATCACACAGACCATCTTGTTGGCAAAATGAACAGTCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027285.13 |
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| CDS-3UTR GCA 90 bp | TTTACAGATTTACAAGAACTCATCCCTTCCCAACACCAGACAGTTTCTCTAGGATTTGCTCCAGCCGTGTaGCTTGCTGCATCCCTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: FTDLQELIPSQHQTVSLGFAPAV*LAASLE Trigger: TTCCAGGGATGCAGCAAGGCACACGGCTGGAGCAAA...TCCTAGAGAAACTGTCTGGTGTTGGGAAGGGATGAGTTCTTGTAAATCTGTAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 |
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| CDS-3UTR GCA 90 bp | ATTTACAGATTTACAAGAACTCATCCCTTCCCAACACCAGACAGTTTCTCTAGGAAAGTTCCATCCCAGTaGCAGCGACAGCCCGTACAG | + |
|
Preference number: 4 (lower is better) Translates to: IYRFTRTHPFPTPDSFSRKVPSQ*QRQPVQ Trigger: CTGTACGGGCTGTCGCTGGCACTGGGATGGAACTTT...CCTAGAGAAACTGTCTGGTGTTGGGAAGGGATGAGTTCTTGTAAATCTGTAAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 |
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| CDS-3UTR GCA 90 bp | TTTACAGATTTACAAGAACTCATCCCTTCCCAACACCAGACAGTTTCTCTAGGAAAAGTTCCATCCCAGTaGCAGCGACAGCCCGTACAG | + |
|
Preference number: 4 (lower is better) Translates to: FTDLQELIPSQHQTVSLGKVPSQ*QRQPVQ Trigger: CTGTACGGGCTGTCGCTGGCACTGGGATGGAACTTT...TCCTAGAGAAACTGTCTGGTGTTGGGAAGGGATGAGTTCTTGTAAATCTGTAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 |
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| CDS-3UTR CCA 90 bp | TACAGATTTACAAGAACTCATCCCTTCCCAACACCAGACAGTTTCTCTAGGATGTCATCTCTGGCCCACTaGTCCTTTGTTTGCTTCCGG | + |
|
Preference number: 4 (lower is better) Translates to: YRFTRTHPFPTPDSFSRMSSLAH*SFVCFR Trigger: CCGGAAGCAAACAAAGGACCAGTGGGCCAGAGATGA...CATCCTAGAGAAACTGTCTGGTGTTGGGAAGGGATGAGTTCTTGTAAATCTGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 |
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| CDS-3UTR GCA 90 bp | CAGACTGTTCATTTTGCCAACAAGATGGTCTGTGTGATCCAACACTTACTGTACCAGCACCATGAGAGGTaGGAATGGATAGAGCAGGAT | + |
|
Preference number: 4 (lower is better) Translates to: QTVHFANKMVCVIQHLLYQHHER*EWIEQD Trigger: ATCCTGCTCTATCCATTCGCACCTCTCATGGTGCTG...GTACAGTAAGTGTTGGATCACACAGACCATCTTGTTGGCAAAATGAACAGTCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027285.13 |
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| CDS-3UTR GCA 90 bp | TACAGATTTACAAGAACTCATCCCTTCCCAACACCAGACAGTTTCTCTAGGATGCAGCACCATGAGAGGTaGGAATGGATAGAGCAGGAT | + |
|
Preference number: 4 (lower is better) Translates to: YRFTRTHPFPTPDSFSRMQHHER*EWIEQD Trigger: ATCCTGCTCTATCCATTCGCACCTCTCATGGTGCTG...CATCCTAGAGAAACTGTCTGGTGTTGGGAAGGGATGAGTTCTTGTAAATCTGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 |
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| CDS-3UTR CCA 90 bp | CTGCGTAAATGGGCTTTAAAAATGGGACAGACTGTTCATTTTGCCAACAAGATGTCATCTCTGGCCCACTaGTCCTTTGTTTGCTTCCGG | + |
|
Preference number: 4 (lower is better) Translates to: LRKWALKMGQTVHFANKMSSLAH*SFVCFR Trigger: CCGGAAGCAAACAAAGGACCAGTGGGCCAGAGATGA...CATCTTGTTGGCAAAATGAACAGTCTGTCCCATTTTTAAAGCCCATTTACGCAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027285.13 |
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| CDS-3UTR CCA 90 bp | TTTACAGATTTACAAGAACTCATCCCTTCCCAACACCAGACAGTTTCTCTAGGATCATCTCTGGCCCACTaGTCCTTTGTTTGCTTCCGG | + |
|
Preference number: 4 (lower is better) Translates to: FTDLQELIPSQHQTVSLGSSLAH*SFVCFR Trigger: CCGGAAGCAAACAAAGGACCAGTGGGCCAGAGATGA...TCCTAGAGAAACTGTCTGGTGTTGGGAAGGGATGAGTTCTTGTAAATCTGTAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 |
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| CDS-3UTR CCA 90 bp | TTTACAGATTTACAAGAACTCATCCCTTCCCAACACCAGACAGTTTCTCTAGGAAGGCAGGGTCATCTCTaGCCCACTGGTCCTTTGTTT | + |
|
Preference number: 4 (lower is better) Translates to: FTDLQELIPSQHQTVSLGRQGHL*PTGPLF Trigger: AAACAAAGGACCAGTGGGCCAGAGATGACCCTGCCT...TCCTAGAGAAACTGTCTGGTGTTGGGAAGGGATGAGTTCTTGTAAATCTGTAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 |
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| CDS-3UTR CCA 90 bp | ATTTACAGATTTACAAGAACTCATCCCTTCCCAACACCAGACAGTTTCTCTAGGAGGCAGGGTCATCTCTaGCCCACTGGTCCTTTGTTT | + |
|
Preference number: 4 (lower is better) Translates to: IYRFTRTHPFPTPDSFSRRQGHL*PTGPLF Trigger: AAACAAAGGACCAGTGGGCCAGAGATGACCCTGCCT...CCTAGAGAAACTGTCTGGTGTTGGGAAGGGATGAGTTCTTGTAAATCTGTAAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 |
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| CDS-3UTR CCA 90 bp | TACAGATTTACAAGAACTCATCCCTTCCCAACACCAGACAGTTTCTCTAGGATGCAAAGCCGAATCCTATaGTGGACACACAGAGCCAGA | + |
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Preference number: 4 (lower is better) Translates to: YRFTRTHPFPTPDSFSRMQSRIL*WTHRAR Trigger: TCTGGCTCTGTGTGTCCACCATAGGATTCGGCTTTG...CATCCTAGAGAAACTGTCTGGTGTTGGGAAGGGATGAGTTCTTGTAAATCTGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 |
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| CDS-3UTR GCA 90 bp | GACTGTTCATTTTGCCAACAAGATGGTCTGTGTGATCCAACACTTACTGTACCCAAGAGCTGGATAAAATaGAGAATGACGAGGAGCGGA | + |
|
Preference number: 4 (lower is better) Translates to: DCSFCQQDGLCDPTLTVPKSWIK*RMTRSG Trigger: TCCGCTCCTCGTCATTCTGCATTTTATCCAGCTCTT...GGGTACAGTAAGTGTTGGATCACACAGACCATCTTGTTGGCAAAATGAACAGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027285.13 |
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| CDS-3UTR GCA 90 bp | ATTTACAGATTTACAAGAACTCATCCCTTCCCAACACCAGACAGTTTCTCTAGGCAGCACCATGAGAGGTaGGAATGGATAGAGCAGGAT | + |
|
Preference number: 4 (lower is better) Translates to: IYRFTRTHPFPTPDSFSRQHHER*EWIEQD Trigger: ATCCTGCTCTATCCATTCGCACCTCTCATGGTGCTG...CCTAGAGAAACTGTCTGGTGTTGGGAAGGGATGAGTTCTTGTAAATCTGTAAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 |
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| CDS-3UTR CCA 90 bp | ATTTACAGATTTACAAGAACTCATCCCTTCCCAACACCAGACAGTTTCTCTAGGCAAAGCCGAATCCTATaGTGGACACACAGAGCCAGA | + |
|
Preference number: 4 (lower is better) Translates to: IYRFTRTHPFPTPDSFSRQSRIL*WTHRAR Trigger: TCTGGCTCTGTGTGTCCACCATAGGATTCGGCTTTG...CCTAGAGAAACTGTCTGGTGTTGGGAAGGGATGAGTTCTTGTAAATCTGTAAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 |
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| CDS-3UTR GCA 90 bp | GACTGTTCATTTTGCCAACAAGATGGTCTGTGTGATCCAACACTTACTGTACCCTTTCAAAAATGGCAGTaGACTGTATCCCAGGAAGGT | + |
|
Preference number: 4 (lower is better) Translates to: DCSFCQQDGLCDPTLTVPFQKWQ*TVSQEG Trigger: ACCTTCCTGGGATACAGTGCACTGCCATTTTTGAAA...GGGTACAGTAAGTGTTGGATCACACAGACCATCTTGTTGGCAAAATGAACAGTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027285.13 |
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| CDS-3UTR GCA 90 bp | ATGGGCTTTAAAAATGGGACAGACTGTTCATTTTGCCAACAAGATGGTCTGTGTGTAGAGCATCTGCCATaGAGCAAACTCAAAGTCCAT | + |
|
Preference number: 4 (lower is better) Translates to: MGFKNGTDCSFCQQDGLCVEHLP*SKLKVH Trigger: ATGGACTTTGAGTTTGCTGCATGGCAGATGCTCTAC...ACACAGACCATCTTGTTGGCAAAATGAACAGTCTGTCCCATTTTTAAAGCCCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027285.13 |
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| CDS-3UTR GCA 90 bp | ATTTACAGATTTACAAGAACTCATCCCTTCCCAACACCAGACAGTTTCTCTAGGGTAGAGCATCTGCCATaGAGCAAACTCAAAGTCCAT | + |
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Preference number: 4 (lower is better) Translates to: IYRFTRTHPFPTPDSFSRVEHLP*SKLKVH Trigger: ATGGACTTTGAGTTTGCTGCATGGCAGATGCTCTAC...CCTAGAGAAACTGTCTGGTGTTGGGAAGGGATGAGTTCTTGTAAATCTGTAAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 |
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| CDS-3UTR GCA 90 bp | TTTACAGATTTACAAGAACTCATCCCTTCCCAACACCAGACAGTTTCTCTAGGAGTAGAGCATCTGCCATaGAGCAAACTCAAAGTCCAT | + |
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Preference number: 4 (lower is better) Translates to: FTDLQELIPSQHQTVSLGVEHLP*SKLKVH Trigger: ATGGACTTTGAGTTTGCTGCATGGCAGATGCTCTAC...TCCTAGAGAAACTGTCTGGTGTTGGGAAGGGATGAGTTCTTGTAAATCTGTAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 |
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| CDS-3UTR GCA 90 bp | TTTACAGATTTACAAGAACTCATCCCTTCCCAACACCAGACAGTTTCTCTAGGAAAGAGCTGGATAAAATaGAGAATGACGAGGAGCGGA | + |
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Preference number: 4 (lower is better) Translates to: FTDLQELIPSQHQTVSLGKSWIK*RMTRSG Trigger: TCCGCTCCTCGTCATTCTGCATTTTATCCAGCTCTT...TCCTAGAGAAACTGTCTGGTGTTGGGAAGGGATGAGTTCTTGTAAATCTGTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 |
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| CDS-3UTR GCA 90 bp | ATTTACAGATTTACAAGAACTCATCCCTTCCCAACACCAGACAGTTTCTCTAGGAAGAGCTGGATAAAATaGAGAATGACGAGGAGCGGA | + |
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Preference number: 4 (lower is better) Translates to: IYRFTRTHPFPTPDSFSRKSWIK*RMTRSG Trigger: TCCGCTCCTCGTCATTCTGCATTTTATCCAGCTCTT...CCTAGAGAAACTGTCTGGTGTTGGGAAGGGATGAGTTCTTGTAAATCTGTAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 |
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| CDS-3UTR CCA 90 bp | ATGGGCTTTAAAAATGGGACAGACTGTTCATTTTGCCAACAAGATGGTCTGTGTGCCTTGCTGCATCCCTaGAATTTAATACTCCATTCC | + |
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Preference number: 4 (lower is better) Translates to: MGFKNGTDCSFCQQDGLCALLHP*NLILHS Trigger: GGAATGGAGTATTAAATTCCAGGGATGCAGCAAGGC...ACACAGACCATCTTGTTGGCAAAATGAACAGTCTGTCCCATTTTTAAAGCCCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027285.13 |
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| CDS-3UTR CCA 90 bp | ATTTACAGATTTACAAGAACTCATCCCTTCCCAACACCAGACAGTTTCTCTAGGGCCTTGCTGCATCCCTaGAATTTAATACTCCATTCC | + |
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Preference number: 4 (lower is better) Translates to: IYRFTRTHPFPTPDSFSRALLHP*NLILHS Trigger: GGAATGGAGTATTAAATTCCAGGGATGCAGCAAGGC...CCTAGAGAAACTGTCTGGTGTTGGGAAGGGATGAGTTCTTGTAAATCTGTAAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 |
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| CDS-3UTR GCA 90 bp | CTGCGTAAATGGGCTTTAAAAATGGGACAGACTGTTCATTTTGCCAACAAGATGAACTCAAAGTCCATCTaGCGAAATCGAAAGAGCCTT | + |
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Preference number: 4 (lower is better) Translates to: LRKWALKMGQTVHFANKMNSKSI*RNRKSL Trigger: AAGGCTCTTTCGATTTCGGCAGATGGACTTTGAGTT...CATCTTGTTGGCAAAATGAACAGTCTGTCCCATTTTTAAAGCCCATTTACGCAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027285.13 |
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| CDS-3UTR GCA 90 bp | TTTACAGATTTACAAGAACTCATCCCTTCCCAACACCAGACAGTTTCTCTAGGAAACTCAAAGTCCATCTaGCGAAATCGAAAGAGCCTT | + |
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Preference number: 4 (lower is better) Translates to: FTDLQELIPSQHQTVSLGNSKSI*RNRKSL Trigger: AAGGCTCTTTCGATTTCGGCAGATGGACTTTGAGTT...TCCTAGAGAAACTGTCTGGTGTTGGGAAGGGATGAGTTCTTGTAAATCTGTAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 |
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| CDS-3UTR GCA 90 bp | ATTTACAGATTTACAAGAACTCATCCCTTCCCAACACCAGACAGTTTCTCTAGGTTTCAAAAATGGCAGTaGACTGTATCCCAGGAAGGT | + |
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Preference number: 4 (lower is better) Translates to: IYRFTRTHPFPTPDSFSRFQKWQ*TVSQEG Trigger: ACCTTCCTGGGATACAGTGCACTGCCATTTTTGAAA...CCTAGAGAAACTGTCTGGTGTTGGGAAGGGATGAGTTCTTGTAAATCTGTAAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 |
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| CDS GCA 90 bp | TCAGATGCACATCAAAGGCATAGCCCCACTCCACGTCATAGTCCCTaGTCTGGCGTTTCACCAGGTACTTGTTGGAGACGAACCACATTA | + |
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Preference number: 5 (lower is better) Translates to: SDAHQRHSPTPRHSP*SGVSPGTCWRRTTL Trigger: TAATGTGGTTCGTCTCCAACAAGTACCTGGTGAAACGCCAGAGCAGGGACTATGACGTGGAGTGGGGCTATGCCTTTGATGTGCATCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 ENSMUST00000144617.8 ENSMUST00000193979.6 |
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| CDS GCA 90 bp | GTACTTGTAGAAGGAACACAATGTGTGGGTAAAGTTCCATCCCAGTaGCAGCGACAGCCCGTACAGCACCATGAGAGGTGCGAATGGATA | + |
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Preference number: 5 (lower is better) Translates to: VLVEGTQCVGKVPSQ*QRQPVQHHERCEWI Trigger: TATCCATTCGCACCTCTCATGGTGCTGTACGGGCTGTCGCTGGCACTGGGATGGAACTTTACCCACACATTGTGTTCCTTCTACAAGTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 |
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| CDS CCA 90 bp | ACTCCACGTCATAGTCCCTGCTCTGGCGTTTCACCAGGTACTTGTTaGAGACGAACCACATTAACGTTGAGATCAGAAGGCCAACACCCA | + |
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Preference number: 5 (lower is better) Translates to: TPRHSPCSGVSPGTC*RRTTLTLRSEGQHP Trigger: TGGGTGTTGGCCTTCTGATCTCAACGTTAATGTGGTTCGTCTCCAACAAGTACCTGGTGAAACGCCAGAGCAGGGACTATGACGTGGAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 ENSMUST00000144617.8 ENSMUST00000193979.6 |
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| CDS CCA 90 bp | TCCCAGTGCCAGCGACAGCCCGTACAGCACCATGAGAGGTGCGAATaGATAGAGCAGGATCACTGTATTTTTCAAAAATGGCAGTGCACT | + |
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Preference number: 5 (lower is better) Translates to: SQCQRQPVQHHERCE*IEQDHCIFQKWQCT Trigger: AGTGCACTGCCATTTTTGAAAAATACAGTGATCCTGCTCTATCCATTCGCACCTCTCATGGTGCTGTACGGGCTGTCGCTGGCACTGGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 |
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| CDS TCA 90 bp | ATGCAGCAAACTCAAAGTCCATCTGCCGAAATCGAAAGAGCCTTCTaGGGTACTTGTAGCGTTTTGCTCCAGCCGTGTGCCTTGCTGCAT | + |
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Preference number: 5 (lower is better) Translates to: MQQTQSPSAEIERAF*GTCSVLLQPCALLH Trigger: ATGCAGCAAGGCACACGGCTGGAGCAAAACGCTACAAGTACCTCAGAAGGCTCTTTCGATTTCGGCAGATGGACTTTGAGTTTGCTGCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 ENSMUST00000144617.8 ENSMUST00000193713.2 ENSMUST00000193979.6 |
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| CDS CCA 90 bp | GGTACTTGTAGCGTTTTGCTCCAGCCGTGTGCCTTGCTGCATCCCTaGAATTTAATACTCCATTCCCGTGCATCGAAGAACTCAAGGAAG | + |
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Preference number: 5 (lower is better) Translates to: GTCSVLLQPCALLHP*NLILHSRASKNSRK Trigger: CTTCCTTGAGTTCTTCGATGCACGGGAATGGAGTATTAAATTCCAGGGATGCAGCAAGGCACACGGCTGGAGCAAAACGCTACAAGTACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 ENSMUST00000144617.8 ENSMUST00000193713.2 ENSMUST00000193979.6 |
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| CDS CCA 90 bp | CACAGAGCCAGATACTTAAGAGGACTAAGAAGGCAGGGTCATCTCTaGCCCACTGGTCCTTTGTTTGCTTCCGGTAGTGAAAGTTTCTAT | + |
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Preference number: 5 (lower is better) Translates to: HRARYLRGLRRQGHL*PTGPLFASGSESFY Trigger: ATAGAAACTTTCACTACCGGAAGCAAACAAAGGACCAGTGGGCCAGAGATGACCCTGCCTTCTTAGTCCTCTTAAGTATCTGGCTCTGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 ENSMUST00000144617.8 ENSMUST00000193979.6 |
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| CDS GCA 90 bp | TCTATAAACCCTCTGAGGAGAGGTAAACAGGTAGAGCATCTGCCATaGAGCAAACTCAAAGTCCATCTGCCGAAATCGAAAGAGCCTTCT | + |
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Preference number: 5 (lower is better) Translates to: SINPLRRGKQVEHLP*SKLKVHLPKSKEPS Trigger: AGAAGGCTCTTTCGATTTCGGCAGATGGACTTTGAGTTTGCTGCATGGCAGATGCTCTACCTGTTTACCTCTCCTCAGAGGGTTTATAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 ENSMUST00000144617.8 ENSMUST00000193713.2 ENSMUST00000193979.6 |
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| CDS-3UTR CAA 90 bp | TTTACAGATTTACAAGAACTCATCCCTTCCCAACACCAGACAGTTTCTCTAGGAGGTACTTGTAGCGTTTaGCTCCAGCCGTGTGCCTTG | + |
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Preference number: 5 (lower is better) Translates to: FTDLQELIPSQHQTVSLGGTCSV*LQPCAL Trigger: CAAGGCACACGGCTGGAGCAAAACGCTACAAGTACC...TCCTAGAGAAACTGTCTGGTGTTGGGAAGGGATGAGTTCTTGTAAATCTGTAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 |
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| CDS-3UTR CAA 90 bp | ATTTACAGATTTACAAGAACTCATCCCTTCCCAACACCAGACAGTTTCTCTAGGGGTACTTGTAGCGTTTaGCTCCAGCCGTGTGCCTTG | + |
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Preference number: 5 (lower is better) Translates to: IYRFTRTHPFPTPDSFSRGTCSV*LQPCAL Trigger: CAAGGCACACGGCTGGAGCAAAACGCTACAAGTACC...CCTAGAGAAACTGTCTGGTGTTGGGAAGGGATGAGTTCTTGTAAATCTGTAAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 |
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| CDS-3UTR CAA 90 bp | ATTTACAGATTTACAAGAACTCATCCCTTCCCAACACCAGACAGTTTCTCTAGGTGGCCCACTGGTCCTTaGTTTGCTTCCGGTAGTGAA | + |
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Preference number: 5 (lower is better) Translates to: IYRFTRTHPFPTPDSFSRWPTGP*FASGSE Trigger: TTCACTACCGGAAGCAAACAAAGGACCAGTGGGCCA...CCTAGAGAAACTGTCTGGTGTTGGGAAGGGATGAGTTCTTGTAAATCTGTAAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 |
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| CDS-3UTR CAA 90 bp | TTTACAGATTTACAAGAACTCATCCCTTCCCAACACCAGACAGTTTCTCTAGGATGGCCCACTGGTCCTTaGTTTGCTTCCGGTAGTGAA | + |
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Preference number: 5 (lower is better) Translates to: FTDLQELIPSQHQTVSLGWPTGP*FASGSE Trigger: TTCACTACCGGAAGCAAACAAAGGACCAGTGGGCCA...TCCTAGAGAAACTGTCTGGTGTTGGGAAGGGATGAGTTCTTGTAAATCTGTAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 |
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| CDS-3UTR CAA 90 bp | ACTGTTCATTTTGCCAACAAGATGGTCTGTGTGATCCAACACTTACTGTACCCTCGAACCACATTAACGTaGAGATCAGAAGGCCAACAC | + |
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Preference number: 5 (lower is better) Translates to: TVHFANKMVCVIQHLLYPRTTLT*RSEGQH Trigger: GTGTTGGCCTTCTGATCTCAACGTTAATGTGGTTCG...AGGGTACAGTAAGTGTTGGATCACACAGACCATCTTGTTGGCAAAATGAACAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027285.13 |
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| CDS-3UTR CAA 90 bp | TACAGATTTACAAGAACTCATCCCTTCCCAACACCAGACAGTTTCTCTAGGATGGTGAGAATAACATGGTaGATGAAGAAGAGCTGGATA | + |
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Preference number: 5 (lower is better) Translates to: YRFTRTHPFPTPDSFSRMVRITW*MKKSWI Trigger: TATCCAGCTCTTCTTCATCAACCATGTTATTCTCAC...CATCCTAGAGAAACTGTCTGGTGTTGGGAAGGGATGAGTTCTTGTAAATCTGTA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 |
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| CDS-3UTR CAA 90 bp | TTTACAGATTTACAAGAACTCATCCCTTCCCAACACCAGACAGTTTCTCTAGGAGTGAGAATAACATGGTaGATGAAGAAGAGCTGGATA | + |
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Preference number: 5 (lower is better) Translates to: FTDLQELIPSQHQTVSLGVRITW*MKKSWI Trigger: TATCCAGCTCTTCTTCATCAACCATGTTATTCTCAC...TCCTAGAGAAACTGTCTGGTGTTGGGAAGGGATGAGTTCTTGTAAATCTGTAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 |
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| CDS-3UTR CAA 90 bp | ATTTACAGATTTACAAGAACTCATCCCTTCCCAACACCAGACAGTTTCTCTAGGGTGAGAATAACATGGTaGATGAAGAAGAGCTGGATA | + |
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Preference number: 5 (lower is better) Translates to: IYRFTRTHPFPTPDSFSRVRITW*MKKSWI Trigger: TATCCAGCTCTTCTTCATCAACCATGTTATTCTCAC...CCTAGAGAAACTGTCTGGTGTTGGGAAGGGATGAGTTCTTGTAAATCTGTAAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 |
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| CDS TCA 72 bp | TCCATCCCAGTGCCAGCGACAGCCCGTACAGCACCATaGGAGGTGCGAATGGATAGAGCAGGATCACTGTAT | + |
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Preference number: 6 (lower is better) Translates to: SIPVPATARTAP*EVRMDRAGSLY Trigger: ATACAGTGATCCTGCTCTATCCATTCGCACCTCTCATGGTGCTGTACGGGCTGTCGCTGGCACTGGGATGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 |
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| CDS GCA 72 bp | GAAGGAACACAATGTGTGGGTAAAGTTCCATCCCAGTaGCAGCGACAGCCCGTACAGCACCATGAGAGGTGC | + |
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Preference number: 6 (lower is better) Translates to: EGTQCVGKVPSQ*QRQPVQHHERC Trigger: GCACCTCTCATGGTGCTGTACGGGCTGTCGCTGGCACTGGGATGGAACTTTACCCACACATTGTGTTCCTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 |
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| CDS GCA 72 bp | CATCAAAGGCATAGCCCCACTCCACGTCATAGTCCCTaGTCTGGCGTTTCACCAGGTACTTGTTGGAGACGA | + |
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Preference number: 6 (lower is better) Translates to: HQRHSPTPRHSP*SGVSPGTCWRR Trigger: TCGTCTCCAACAAGTACCTGGTGAAACGCCAGAGCAGGGACTATGACGTGGAGTGGGGCTATGCCTTTGATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 ENSMUST00000144617.8 ENSMUST00000193979.6 |
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| CDS TCA 72 bp | ACTCAAAGTCCATCTGCCGAAATCGAAAGAGCCTTCTaGGGTACTTGTAGCGTTTTGCTCCAGCCGTGTGCC | + |
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Preference number: 6 (lower is better) Translates to: TQSPSAEIERAF*GTCSVLLQPCA Trigger: GGCACACGGCTGGAGCAAAACGCTACAAGTACCTCAGAAGGCTCTTTCGATTTCGGCAGATGGACTTTGAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 ENSMUST00000144617.8 ENSMUST00000193713.2 ENSMUST00000193979.6 |
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| CDS GCA 72 bp | AAATCGAAAGAGCCTTCTGAGGTACTTGTAGCGTTTTaGTCCAGCCGTGTGCCTTGCTGCATCCCTGGAATT | + |
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Preference number: 6 (lower is better) Translates to: KSKEPSEVLVAF*SSRVPCCIPGI Trigger: AATTCCAGGGATGCAGCAAGGCACACGGCTGGAGCAAAACGCTACAAGTACCTCAGAAGGCTCTTTCGATTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 ENSMUST00000144617.8 ENSMUST00000193713.2 ENSMUST00000193979.6 |
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| CDS CAA 72 bp | GAAGGCAGGGTCATCTCTGGCCCACTGGTCCTTTGTTaGCTTCCGGTAGTGAAAGTTTCTATAAACCCTCTG | + |
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Preference number: 6 (lower is better) Translates to: EGRVISGPLVLC*LPVVKVSINPL Trigger: CAGAGGGTTTATAGAAACTTTCACTACCGGAAGCAAACAAAGGACCAGTGGGCCAGAGATGACCCTGCCTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 ENSMUST00000144617.8 ENSMUST00000193713.2 ENSMUST00000193979.6 |
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| CDS CCA 72 bp | AGATACTTAAGAGGACTAAGAAGGCAGGGTCATCTCTaGCCCACTGGTCCTTTGTTTGCTTCCGGTAGTGAA | + |
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Preference number: 6 (lower is better) Translates to: RYLRGLRRQGHL*PTGPLFASGSE Trigger: TTCACTACCGGAAGCAAACAAAGGACCAGTGGGCCAGAGATGACCCTGCCTTCTTAGTCCTCTTAAGTATCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 ENSMUST00000144617.8 ENSMUST00000193979.6 |
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| CDS CAA 72 bp | CTAAGAAGGCAGGGTCATCTCTGGCCCACTGGTCCTTaGTTTGCTTCCGGTAGTGAAAGTTTCTATAAACCC | + |
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Preference number: 6 (lower is better) Translates to: LRRQGHLWPTGP*FASGSESFYKP Trigger: GGGTTTATAGAAACTTTCACTACCGGAAGCAAACAAAGGACCAGTGGGCCAGAGATGACCCTGCCTTCTTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000027285.13 ENSMUST00000114925.10 ENSMUST00000118059.3 ENSMUST00000144617.8 ENSMUST00000193713.2 ENSMUST00000193979.6 |
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