RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for UNC119B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000046562

Ensembl transcript IDs: ENSMUST00000060798.6

Found 97 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GCCCTTCTCCAGCCAGTAGTGTGGGCTCTCCAAGCAAAGCCAGCATaGCAGGCAGGAGACAGCGTGCCAGAAAACAGGAGCGTCCCAGGC +
Preference number: 1 (lower is better)
Translates to: ALLQPVVWALQAKPA*QAGDSVPENRSVPG
Trigger: GCCTGGGACGCTCCTGTTTTCTGGCACGCTGTCTCCTGCCTGTCATGCTGGCTTTGCTTGGAGAGCCCACACTACTGGCTGGAGAAGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR GCA 90 bp GAGGCGCACCTAAGGACTGCTCTGACAGGCAACCTCGGCCTATGCTaGCCTTCCCAAACACTCACACATGCAGCAGTCTGGGGCAGGACC +
Preference number: 1 (lower is better)
Translates to: EAHLRTALTGNLGLC*PSQTLTHAAVWGRT
Trigger: GGTCCTGCCCCAGACTGCTGCATGTGTGAGTGTTTGGGAAGGGCAGCATAGGCCGAGGTTGCCTGTCAGAGCAGTCCTTAGGTGCGCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR GCA 90 bp CCTGAGGCGCACCTAAGGACTGCTCTGACAGGCAACCTCGGCCTATaGTGCCCTTCCCAAACACTCACACATGCAGCAGTCTGGGGCAGG +
Preference number: 1 (lower is better)
Translates to: PEAHLRTALTGNLGL*CPSQTLTHAAVWGR
Trigger: CCTGCCCCAGACTGCTGCATGTGTGAGTGTTTGGGAAGGGCAGCATAGGCCGAGGTTGCCTGTCAGAGCAGTCCTTAGGTGCGCCTCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR GCA 90 bp ATAACTAGGTTTCCCAGTCCCGAAGCCTCCGGAGCACAGCATCACTaGACCATCAGGTGCTGGCCCGGTACAGGGCCTGGGTCCAAACCC +
Preference number: 1 (lower is better)
Translates to: ITRFPSPEASGAQHH*TIRCWPGTGPGSKP
Trigger: GGGTTTGGACCCAGGCCCTGTACCGGGCCAGCACCTGATGGTGCAGTGATGCTGTGCTCCGGAGGCTTCGGGACTGGGAAACCTAGTTAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR TCA 90 bp ACAGGCAGGAGACAGCGTGCCAGAAAACAGGAGCGTCCCAGGCTGTaGGCTACTGAGCTAAGGCCACGCAGCTCTCGGAAGCACACGCTA +
Preference number: 1 (lower is better)
Translates to: TGRRQRARKQERPRL*ATELRPRSSRKHTL
Trigger: TAGCGTGTGCTTCCGAGAGCTGCGTGGCCTTAGCTCAGTAGCTCACAGCCTGGGACGCTCCTGTTTTCTGGCACGCTGTCTCCTGCCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR TCA 90 bp GAGACAGCGTGCCAGAAAACAGGAGCGTCCCAGGCTGTGAGCTACTaGGCTAAGGCCACGCAGCTCTCGGAAGCACACGCTAGGCAGTAT +
Preference number: 1 (lower is better)
Translates to: ETACQKTGASQAVSY*AKATQLSEAHARQY
Trigger: ATACTGCCTAGCGTGTGCTTCCGAGAGCTGCGTGGCCTTAGCTCAGTAGCTCACAGCCTGGGACGCTCCTGTTTTCTGGCACGCTGTCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR GCA 90 bp AGACTGCTCCATCCTACCAGGATGACTGAGCACCCGGCCTCAGTGTaGTCTGAGAACAGGCTGAAGGGAAAGGGGATGCAGCCCTTCTCC +
Preference number: 1 (lower is better)
Translates to: RLLHPTRMTEHPASV*SENRLKGKGMQPFS
Trigger: GGAGAAGGGCTGCATCCCCTTTCCCTTCAGCCTGTTCTCAGAGCACACTGAGGCCGGGTGCTCAGTCATCCTGGTAGGATGGAGCAGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR CCA 90 bp TGCAGCCCAGCCCAGCACAAGCCTTCTGGCAGACAAAGCTGTGCCTaGACAGTCAGGCTTGTCGGGATAAGCAGTGCACAGCTAAGACTA +
Preference number: 1 (lower is better)
Translates to: CSPAQHKPSGRQSCA*TVRLVGISSAQLRL
Trigger: TAGTCTTAGCTGTGCACTGCTTATCCCGACAAGCCTGACTGTCCAGGCACAGCTTTGTCTGCCAGAAGGCTTGTGCTGGGCTGGGCTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR CCA 90 bp CTTAAGGCACCTAGAGTTGGAATGGACTCCAGTTCTGAGATCCACTaGAATGGTCAGGAGGTGCCCACCATAGGGCACCTGGGCCCCCAT +
Preference number: 1 (lower is better)
Translates to: LKAPRVGMDSSSEIH*NGQEVPTIGHLGPH
Trigger: ATGGGGGCCCAGGTGCCCTATGGTGGGCACCTCCTGACCATTCCAGTGGATCTCAGAACTGGAGTCCATTCCAACTCTAGGTGCCTTAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR CCA 90 bp GCAGCACATGGGGCAGAGCCACACTTAAGGCACCTAGAGTTGGAATaGACTCCAGTTCTGAGATCCACTGGAATGGTCAGGAGGTGCCCA +
Preference number: 1 (lower is better)
Translates to: AAHGAEPHLRHLELE*TPVLRSTGMVRRCP
Trigger: TGGGCACCTCCTGACCATTCCAGTGGATCTCAGAACTGGAGTCCATTCCAACTCTAGGTGCCTTAAGTGTGGCTCTGCCCCATGTGCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR CCA 90 bp TTACGGTTCAGAAGGGCAGCTCATCCCCAAGACATGGGGCAAGGATaGAGATGGAGCAGAACTTTGCCTCATACCAGGAAGGGTTCAGCC +
Preference number: 1 (lower is better)
Translates to: LRFRRAAHPQDMGQG*RWSRTLPHTRKGSA
Trigger: GGCTGAACCCTTCCTGGTATGAGGCAAAGTTCTGCTCCATCTCCATCCTTGCCCCATGTCTTGGGGATGAGCTGCCCTTCTGAACCGTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR TCA 90 bp TCTGAGGCTTGTCAAGAGCATGGAAAGCTCACCAGAGGAGCCACGTaGGGAAAGGCAGAGAGACACTCATGTCTGTATGCAGGTGAGGGA +
Preference number: 1 (lower is better)
Translates to: SEACQEHGKLTRGAT*GKAERHSCLYAGEG
Trigger: TCCCTCACCTGCATACAGACATGAGTGTCTCTCTGCCTTTCCTCACGTGGCTCCTCTGGTGAGCTTTCCATGCTCTTGACAAGCCTCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR GCA 90 bp TCTGGGGCCCTGGTCTCATTACAGGTGACATTACAGGTGACATGGTaGCTCAGAGACACTTCATGCACACCCACCCTTCCAGCACTTCAT +
Preference number: 1 (lower is better)
Translates to: SGALVSLQVTLQVTW*LRDTSCTPTLPALH
Trigger: ATGAAGTGCTGGAAGGGTGGGTGTGCATGAAGTGTCTCTGAGGCACCATGTCACCTGTAATGTCACCTGTAATGAGACCAGGGCCCCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR CCA 90 bp TACTCTGGGGCCCTGGTCTCATTACAGGTGACATTACAGGTGACATaGTGCCTCAGAGACACTTCATGCACACCCACCCTTCCAGCACTT +
Preference number: 1 (lower is better)
Translates to: YSGALVSLQVTLQVT*CLRDTSCTPTLPAL
Trigger: AAGTGCTGGAAGGGTGGGTGTGCATGAAGTGTCTCTGAGGCACCATGTCACCTGTAATGTCACCTGTAATGAGACCAGGGCCCCAGAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR GCA 90 bp CGAACAAGAATGCGCCCACCTCGTCCAGACTCCCTGTGGCTATGGTaGTCTGGACATGGAATGTGGATGTTTTCAGAATCTGAGTCTATG +
Preference number: 1 (lower is better)
Translates to: RTRMRPPRPDSLWLW*SGHGMWMFSESESM
Trigger: CATAGACTCAGATTCTGAAAACATCCACATTCCATGTCCAGAGCACCATAGCCACAGGGAGTCTGGACGAGGTGGGCGCATTCTTGTTCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR CCA 90 bp TATTCCTGTATTTACGGTTCAGAAGGGCAGCTCATCCCCAAGACATaGGGCAAGGATGGAGATGGAGCAGAACTTTGCCTCATACCAGGA +
Preference number: 1 (lower is better)
Translates to: YSCIYGSEGQLIPKT*GKDGDGAELCLIPG
Trigger: TCCTGGTATGAGGCAAAGTTCTGCTCCATCTCCATCCTTGCCCCATGTCTTGGGGATGAGCTGCCCTTCTGAACCGTAAATACAGGAATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR GCA 90 bp TTACAGGTGACATTACAGGTGACATGGTGCCTCAGAGACACTTCATaGACACCCACCCTTCCAGCACTTCATTCAGTGACAAATGAACCC +
Preference number: 1 (lower is better)
Translates to: LQVTLQVTWCLRDTS*TPTLPALHSVTNEP
Trigger: GGGTTCATTTGTCACTGAATGAAGTGCTGGAAGGGTGGGTGTGCATGAAGTGTCTCTGAGGCACCATGTCACCTGTAATGTCACCTGTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR TCA 90 bp CCCGGGAAGCTTACCCTAATCTTTTACTTCACTATAATACCTCTGTaGACTAGGGGGCAGGGAACAAACACTGGGAAGAGAAACTGCTGG +
Preference number: 1 (lower is better)
Translates to: PGKLTLIFYFTIIPL*TRGQGTNTGKRNCW
Trigger: CCAGCAGTTTCTCTTCCCAGTGTTTGTTCCCTGCCCCCTAGTTCACAGAGGTATTATAGTGAAGTAAAAGATTAGGGTAAGCTTCCCGGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR TCA 90 bp GCATCCTGGGCTCTAAATACTGACGTAAAAATCCCCGAAGAAGTCTaGGAAGGAAGAGAGCAAAGCACAGGGTGCACACTAAACTCAAGA +
Preference number: 1 (lower is better)
Translates to: ASWALNTDVKIPEEV*EGREQSTGCTLNSR
Trigger: TCTTGAGTTTAGTGTGCACCCTGTGCTTTGCTCTCTTCCTTCTCAGACTTCTTCGGGGATTTTTACGTCAGTATTTAGAGCCCAGGATGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR TCA 90 bp CAGGAAGCCACTGTAGCCACTGGTGTTCCTGGACAGTTTGACTTCTaGCTCGGCTTCTGCTTGTTCAGTTATTTACAAAGTATGACTTCC +
Preference number: 1 (lower is better)
Translates to: QEATVATGVPGQFDF*LGFCLFSYLQSMTS
Trigger: GGAAGTCATACTTTGTAAATAACTGAACAAGCAGAAGCCGAGTCAGAAGTCAAACTGTCCAGGAACACCAGTGGCTACAGTGGCTTCCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR TCA 90 bp TTGACTTCTGACTCGGCTTCTGCTTGTTCAGTTATTTACAAAGTATaGCTTCCAGTTTACTCAAGTCAGGCACAAAAGTTGGAATTTCAA +
Preference number: 1 (lower is better)
Translates to: LTSDSASACSVIYKV*LPVYSSQAQKLEFQ
Trigger: TTGAAATTCCAACTTTTGTGCCTGACTTGAGTAAACTGGAAGTCATACTTTGTAAATAACTGAACAAGCAGAAGCCGAGTCAGAAGTCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR-3UTR TCA 90 bp CTGCACCATCAGGTGCTGGCCCGGTACAGGGCCTGGGTCCAAACCCAGAACCACCAGTCAGTGGGGATCTaGGGACCCCTGAGGCGCACC +
Preference number: 2 (lower is better)
Translates to: LHHQVLARYRAWVQTQNHQSVGI*GPLRRT
Trigger: GGTGCGCCTCAGGGGTCCTCAGATCCCCACTGACTG...GTGGTTCTGGGTTTGGACCCAGGCCCTGTACCGGGCCAGCACCTGATGGTGCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR-3UTR TCA 90 bp CAGGAGGTGCCCACCATAGGGCACCTGGGCCCCCATCTATCTCAGTGGGTAAACGGATCTGAGGACCCCTaGGGCGCACCTAAGGACTGC +
Preference number: 2 (lower is better)
Translates to: QEVPTIGHLGPHLSQWVNGSEDP*GAPKDC
Trigger: GCAGTCCTTAGGTGCGCCTCAGGGGTCCTCAGATCC...GTTTACCCACTGAGATAGATGGGGGCCCAGGTGCCCTATGGTGGGCACCTCCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR-3UTR CCA 90 bp CTGCACCATCAGGTGCTGGCCCGGTACAGGGCCTGGGTCCAAACCCAGAACCACAGGGAGCCAGAGAGGTaGGAGTCAGTCAGTGGGGAT +
Preference number: 2 (lower is better)
Translates to: LHHQVLARYRAWVQTQNHREPER*ESVSGD
Trigger: ATCCCCACTGACTGACTCCCACCTCTCTGGCTCCCT...GTGGTTCTGGGTTTGGACCCAGGCCCTGTACCGGGCCAGCACCTGATGGTGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR-3UTR TCA 90 bp CCCGGGCTCTGCCTACCCCAGTCCCTCTTCAAGTTTCTTCCAGTTGGCCTAACTGGGACGGGGGAGAAGTaGGCTGCTCTCAGCTGCCCA +
Preference number: 2 (lower is better)
Translates to: PGLCLPQSLFKFLPVGLTGTGEK*AALSCP
Trigger: TGGGCAGCTGAGAGCAGCTCACTTCTCCCCCGTCCC...AGTTAGGCCAACTGGAAGAAACTTGAAGAGGGACTGGGGTAGGCAGAGCCCGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR-3UTR GCA 90 bp AGATGCCCAGGGCCAGGAGAAGCTTCAGGAGGCTCATATGAGCCAGCGTTGGGCAAGCACCCAGGAACCTaGAGGGGCTGGGAACCTGCA +
Preference number: 2 (lower is better)
Translates to: RCPGPGEASGGSYEPALGKHPGT*RGWEPA
Trigger: TGCAGGTTCCCAGCCCCTGCAGGTTCCTGGGTGCTT...GCCCAACGCTGGCTCATATGAGCCTCCTGAAGCTTCTCCTGGCCCTGGGCATCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR-3UTR GCA 90 bp AGATGCCCAGGGCCAGGAGAAGCTTCAGGAGGCTCATATGAGCCAGCGTTGGGCGGAGCACAGCATCACTaGACCATCAGGTGCTGGCCC +
Preference number: 2 (lower is better)
Translates to: RCPGPGEASGGSYEPALGGAQHH*TIRCWP
Trigger: GGGCCAGCACCTGATGGTGCAGTGATGCTGTGCTCC...GCCCAACGCTGGCTCATATGAGCCTCCTGAAGCTTCTCCTGGCCCTGGGCATCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR-3UTR GCA 90 bp CACACTAAACTCAAGAGACACCGTTCTGTGAACAGAACTGCCCAGGGCCACGGCCAGGGGCTGGGAACCTaGAGCCCAGCCCAGCACAAG +
Preference number: 2 (lower is better)
Translates to: HTKLKRHRSVNRTAQGHGQGLGT*SPAQHK
Trigger: CTTGTGCTGGGCTGGGCTGCAGGTTCCCAGCCCCTG...GCCGTGGCCCTGGGCAGTTCTGTTCACAGAACGGTGTCTCTTGAGTTTAGTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR-3UTR CCA 90 bp CAGGAGGTGCCCACCATAGGGCACCTGGGCCCCCATCTATCTCAGTGGGTAAACGGGAAGAGAAACTGCTaGCTGGCACCTCCTTGGAGC +
Preference number: 2 (lower is better)
Translates to: QEVPTIGHLGPHLSQWVNGKRNC*LAPPWS
Trigger: GCTCCAAGGAGGTGCCAGCCAGCAGTTTCTCTTCCC...GTTTACCCACTGAGATAGATGGGGGCCCAGGTGCCCTATGGTGGGCACCTCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR-3UTR CCA 90 bp TGGTCAGGAGGTGCCCACCATAGGGCACCTGGGCCCCCATCTATCTCAGTGGGTAGACAAAGCTGTGCCTaGACAGTCAGGCTTGTCGGG +
Preference number: 2 (lower is better)
Translates to: WSGGAHHRAPGPPSISVGRQSCA*TVRLVG
Trigger: CCCGACAAGCCTGACTGTCCAGGCACAGCTTTGTCT...ACCCACTGAGATAGATGGGGGCCCAGGTGCCCTATGGTGGGCACCTCCTGACCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR-3UTR CCA 90 bp GTATTTACGGTTCAGAAGGGCAGCTCATCCCCAAGACATGGGGCAAGGATGGAGGGAACCTGCAGGGGCTaGGAACCTGCAGCCCAGCCC +
Preference number: 2 (lower is better)
Translates to: VFTVQKGSSSPRHGARMEGTCRG*EPAAQP
Trigger: GGGCTGGGCTGCAGGTTCCCAGCCCCTGCAGGTTCC...CTCCATCCTTGCCCCATGTCTTGGGGATGAGCTGCCCTTCTGAACCGTAAATAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR-3UTR GCA 90 bp TGGTCAGGAGGTGCCCACCATAGGGCACCTGGGCCCCCATCTATCTCAGTGGGTTTACAGGTGACATGGTaGCTCAGAGACACTTCATGC +
Preference number: 2 (lower is better)
Translates to: WSGGAHHRAPGPPSISVGLQVTW*LRDTSC
Trigger: GCATGAAGTGTCTCTGAGGCACCATGTCACCTGTAA...ACCCACTGAGATAGATGGGGGCCCAGGTGCCCTATGGTGGGCACCTCCTGACCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR CAA 90 bp CTCCCAGCAGCACATGGGGCAGAGCCACACTTAAGGCACCTAGAGTaGGAATGGACTCCAGTTCTGAGATCCACTGGAATGGTCAGGAGG +
Preference number: 2 (lower is better)
Translates to: LPAAHGAEPHLRHLE*EWTPVLRSTGMVRR
Trigger: CCTCCTGACCATTCCAGTGGATCTCAGAACTGGAGTCCATTCCAACTCTAGGTGCCTTAAGTGTGGCTCTGCCCCATGTGCTGCTGGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR-3UTR TCA 90 bp CCCACCCTTCCAGCACTTCATTCAGTGACAAATGAACCCCAGCCACAGTGTCCTACTGTGCCTCTCCCATaGGCCACATTAGCCTGGGAG +
Preference number: 2 (lower is better)
Translates to: PTLPALHSVTNEPQPQCPTVPLP*ATLAWE
Trigger: CTCCCAGGCTAATGTGGCTCATGGGAGAGGCACAGT...AGGACACTGTGGCTGGGGTTCATTTGTCACTGAATGAAGTGCTGGAAGGGTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR-3UTR GCA 90 bp GCAGTCAGACACGGACCGCTGGCCCTTCAGAAGCTAAAGACTGCTCCATCCTACCTAAAGCCCCAACTGTaGCTCTCCCATGAGCCACAT +
Preference number: 2 (lower is better)
Translates to: AVRHGPLALQKLKTAPSYLKPQL*LSHEPH
Trigger: ATGTGGCTCATGGGAGAGGCACAGTTGGGGCTTTAG...GTAGGATGGAGCAGTCTTTAGCTTCTGAAGGGCCAGCGGTCCGTGTCTGACTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR-3UTR GCA 90 bp ACCTCGTCCAGACTCCCTGTGGCTATGGTGCTCTGGACATGGAATGTGGATGTTAGGCAGGAGACAGCGTaGCAGAAAACAGGAGCGTCC +
Preference number: 2 (lower is better)
Translates to: TSSRLPVAMVLWTWNVDVRQETA*QKTGAS
Trigger: GGACGCTCCTGTTTTCTGGCACGCTGTCTCCTGCCT...AACATCCACATTCCATGTCCAGAGCACCATAGCCACAGGGAGTCTGGACGAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR-3UTR CCA 90 bp CCTATGCTGCCCTTCCCAAACACTCACACATGCAGCAGTCTGGGGCAGGACCATAGAGAAACTGCTGGCTaGCACCTCCTTGGAGCACAA +
Preference number: 2 (lower is better)
Translates to: PMLPFPNTHTCSSLGQDHRETAG*HLLGAQ
Trigger: TTGTGCTCCAAGGAGGTGCCAGCCAGCAGTTTCTCT...ATGGTCCTGCCCCAGACTGCTGCATGTGTGAGTGTTTGGGAAGGGCAGCATAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR-3UTR CCA 90 bp GACTCCCTGTGGCTATGGTGCTCTGGACATGGAATGTGGATGTTTTCAGAATCTCACCTCCCAACCCAGTaGCTTAGCCCGGGCTCTGCC +
Preference number: 2 (lower is better)
Translates to: DSLWLWCSGHGMWMFSESHLPTQ*LSPGSA
Trigger: GGCAGAGCCCGGGCTAAGCCACTGGGTTGGGAGGTG...AGATTCTGAAAACATCCACATTCCATGTCCAGAGCACCATAGCCACAGGGAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR-3UTR GCA 90 bp CCCACCCTTCCAGCACTTCATTCAGTGACAAATGAACCCCAGCCACAGTGTCCTCCAAACACTCACACATaGAGCAGTCTGGGGCAGGAC +
Preference number: 2 (lower is better)
Translates to: PTLPALHSVTNEPQPQCPPNTHT*SSLGQD
Trigger: GTCCTGCCCCAGACTGCTGCATGTGTGAGTGTTTGG...AGGACACTGTGGCTGGGGTTCATTTGTCACTGAATGAAGTGCTGGAAGGGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR-3UTR CCA 90 bp CCCGGGCTCTGCCTACCCCAGTCCCTCTTCAAGTTTCTTCCAGTTGGCCTAACTGCAGGGAACAAACACTaGGAAGAGAAACTGCTGGCT +
Preference number: 2 (lower is better)
Translates to: PGLCLPQSLFKFLPVGLTAGNKH*EEKLLA
Trigger: AGCCAGCAGTTTCTCTTCCCAGTGTTTGTTCCCTGC...AGTTAGGCCAACTGGAAGAAACTTGAAGAGGGACTGGGGTAGGCAGAGCCCGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR-3UTR CCA 90 bp CCTATGCTGCCCTTCCCAAACACTCACACATGCAGCAGTCTGGGGCAGGACCATCTCTTCCAGGGTCACTaGAAACAGAGTCAGCTCTCT +
Preference number: 2 (lower is better)
Translates to: PMLPFPNTHTCSSLGQDHLFQGH*KQSQLS
Trigger: AGAGAGCTGACTCTGTTTCCAGTGACCCTGGAAGAG...ATGGTCCTGCCCCAGACTGCTGCATGTGTGAGTGTTTGGGAAGGGCAGCATAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR-3UTR GCA 90 bp GCACATCCTTTCTCTCAAGTACTCTGGGGCCCTGGTCTCATTACAGGTGACATTGGGGGAGAAGTGAGCTaGTCTCAGCTGCCCAAAGCA +
Preference number: 2 (lower is better)
Translates to: AHPFSQVLWGPGLITGDIGGEVS*SQLPKA
Trigger: TGCTTTGGGCAGCTGAGAGCAGCTCACTTCTCCCCC...AATGTCACCTGTAATGAGACCAGGGCCCCAGAGTACTTGAGAGAAAGGATGTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR-3UTR CCA 90 bp GACTCCCTGTGGCTATGGTGCTCTGGACATGGAATGTGGATGTTTTCAGAATCTCCAGCTGCAGCTTCCTaGACCAGGTTCGAGGTGGGT +
Preference number: 2 (lower is better)
Translates to: DSLWLWCSGHGMWMFSESPAAAS*TRFEVG
Trigger: ACCCACCTCGAACCTGGTCCAGGAAGCTGCAGCTGG...AGATTCTGAAAACATCCACATTCCATGTCCAGAGCACCATAGCCACAGGGAGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR-3UTR TCA 90 bp GACATGGTGCCTCAGAGACACTTCATGCACACCCACCCTTCCAGCACTTCATTCATCCCCGAAGAAGTCTaGGAAGGAAGAGAGCAAAGC +
Preference number: 2 (lower is better)
Translates to: DMVPQRHFMHTHPSSTSFIPEEV*EGREQS
Trigger: GCTTTGCTCTCTTCCTTCTCAGACTTCTTCGGGGAT...GAATGAAGTGCTGGAAGGGTGGGTGTGCATGAAGTGTCTCTGAGGCACCATGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR-3UTR GCA 90 bp AGGCACCTAGAGTTGGAATGGACTCCAGTTCTGAGATCCACTGGAATGGTCAGGAGCAAGAACAGAAGATaGCACCAGGCTGAGACCGTG +
Preference number: 2 (lower is better)
Translates to: RHLELEWTPVLRSTGMVRSKNRR*HQAETV
Trigger: CACGGTCTCAGCCTGGTGGCATCTTCTGTTCTTGCT...CCTGACCATTCCAGTGGATCTCAGAACTGGAGTCCATTCCAACTCTAGGTGCCT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR-3UTR CCA 90 bp GACTCCCTGTGGCTATGGTGCTCTGGACATGGAATGTGGATGTTTTCAGAATCTGCTCCCAGCAGCACATaGGGCAGAGCCACACTTAAG +
Preference number: 2 (lower is better)
Translates to: DSLWLWCSGHGMWMFSESAPSST*GRATLK
Trigger: CTTAAGTGTGGCTCTGCCCCATGTGCTGCTGGGAGC...AGATTCTGAAAACATCCACATTCCATGTCCAGAGCACCATAGCCACAGGGAGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR-3UTR GCA 90 bp CCCACCCTTCCAGCACTTCATTCAGTGACAAATGAACCCCAGCCACAGTGTCCTGAGCAAAGCACAGGGTaGACACTAAACTCAAGAGAC +
Preference number: 2 (lower is better)
Translates to: PTLPALHSVTNEPQPQCPEQSTG*TLNSRD
Trigger: GTCTCTTGAGTTTAGTGTGCACCCTGTGCTTTGCTC...AGGACACTGTGGCTGGGGTTCATTTGTCACTGAATGAAGTGCTGGAAGGGTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR-3UTR CCA 90 bp CCTATGCTGCCCTTCCCAAACACTCACACATGCAGCAGTCTGGGGCAGGACCATGATCTATCAGCATCCTaGGCTCTAAATACTGACGTA +
Preference number: 2 (lower is better)
Translates to: PMLPFPNTHTCSSLGQDHDLSAS*ALNTDV
Trigger: TACGTCAGTATTTAGAGCCCAGGATGCTGATAGATC...ATGGTCCTGCCCCAGACTGCTGCATGTGTGAGTGTTTGGGAAGGGCAGCATAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR CCA 72 bp CGGGCGACAGCTGCAATTCCTGCTCGGTGCTCGTGGTaGCGGCAGAGGACCTCCCTGTCCACTCCCGCAGCA +
Preference number: 3 (lower is better)
Translates to: RATAAIPARCSW*RQRTSLSTPAA
Trigger: TGCTGCGGGAGTGGACAGGGAGGTCCTCTGCCGCCACCACGAGCACCGAGCAGGAATTGCAGCTGTCGCCCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR GCA 72 bp TTTCCCAGTCCCGAAGCCTCCGGAGCACAGCATCACTaGACCATCAGGTGCTGGCCCGGTACAGGGCCTGGG +
Preference number: 3 (lower is better)
Translates to: FPSPEASGAQHH*TIRCWPGTGPG
Trigger: CCCAGGCCCTGTACCGGGCCAGCACCTGATGGTGCAGTGATGCTGTGCTCCGGAGGCTTCGGGACTGGGAAA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR CCA 72 bp GCCTCCGGAGCACAGCATCACTGCACCATCAGGTGCTaGCCCGGTACAGGGCCTGGGTCCAAACCCAGAACC +
Preference number: 3 (lower is better)
Translates to: ASGAQHHCTIRC*PGTGPGSKPRT
Trigger: GGTTCTGGGTTTGGACCCAGGCCCTGTACCGGGCCAGCACCTGATGGTGCAGTGATGCTGTGCTCCGGAGGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR GCA 72 bp GAAGCCTCCGGAGCACAGCATCACTGCACCATCAGGTaGTGGCCCGGTACAGGGCCTGGGTCCAAACCCAGA +
Preference number: 3 (lower is better)
Translates to: EASGAQHHCTIR*WPGTGPGSKPR
Trigger: TCTGGGTTTGGACCCAGGCCCTGTACCGGGCCAGCACCTGATGGTGCAGTGATGCTGTGCTCCGGAGGCTTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR TCA 72 bp GAGGTGGGAGTCAGTCAGTGGGGATCTGAGGACCCCTaGGGCGCACCTAAGGACTGCTCTGACAGGCAACCT +
Preference number: 3 (lower is better)
Translates to: EVGVSQWGSEDP*GAPKDCSDRQP
Trigger: AGGTTGCCTGTCAGAGCAGTCCTTAGGTGCGCCTCAGGGGTCCTCAGATCCCCACTGACTGACTCCCACCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR TCA 72 bp CTGAGCACCCGGCCTCAGTGTGCTCTGAGAACAGGCTaGAGGGAAAGGGGATGCAGCCCTTCTCCAGCCAGT +
Preference number: 3 (lower is better)
Translates to: LSTRPQCALRTG*RERGCSPSPAS
Trigger: ACTGGCTGGAGAAGGGCTGCATCCCCTTTCCCTTCAGCCTGTTCTCAGAGCACACTGAGGCCGGGTGCTCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR TCA 72 bp TGCCAGAAAACAGGAGCGTCCCAGGCTGTGAGCTACTaGGCTAAGGCCACGCAGCTCTCGGAAGCACACGCT +
Preference number: 3 (lower is better)
Translates to: CQKTGASQAVSY*AKATQLSEAHA
Trigger: AGCGTGTGCTTCCGAGAGCTGCGTGGCCTTAGCTCAGTAGCTCACAGCCTGGGACGCTCCTGTTTTCTGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR TCA 72 bp ATGGGCATGGGGCATGCATGCCCGACCCCCAAGCACTaGTTCCCTCTTCCACTGCATCACAGGAAGCCACTG +
Preference number: 3 (lower is better)
Translates to: MGMGHACPTPKH*FPLPLHHRKPL
Trigger: CAGTGGCTTCCTGTGATGCAGTGGAAGAGGGAATCAGTGCTTGGGGGTCGGGCATGCATGCCCCATGCCCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR GCA 72 bp CCCAGCCCAGCACAAGCCTTCTGGCAGACAAAGCTGTaGCTGGACAGTCAGGCTTGTCGGGATAAGCAGTGC +
Preference number: 3 (lower is better)
Translates to: PSPAQAFWQTKL*LDSQACRDKQC
Trigger: GCACTGCTTATCCCGACAAGCCTGACTGTCCAGGCACAGCTTTGTCTGCCAGAAGGCTTGTGCTGGGCTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR TCA 72 bp CAGCCAGTAGTGTGGGCTCTCCAAGCAAAGCCAGCATaGCAGGCAGGAGACAGCGTGCCAGAAAACAGGAGC +
Preference number: 3 (lower is better)
Translates to: QPVVWALQAKPA*QAGDSVPENRS
Trigger: GCTCCTGTTTTCTGGCACGCTGTCTCCTGCCTGTCATGCTGGCTTTGCTTGGAGAGCCCACACTACTGGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR GCA 72 bp CATCCTACCAGGATGACTGAGCACCCGGCCTCAGTGTaGTCTGAGAACAGGCTGAAGGGAAAGGGGATGCAG +
Preference number: 3 (lower is better)
Translates to: HPTRMTEHPASV*SENRLKGKGMQ
Trigger: CTGCATCCCCTTTCCCTTCAGCCTGTTCTCAGAGCACACTGAGGCCGGGTGCTCAGTCATCCTGGTAGGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR TCA 72 bp TCAGCTCTCTCTAAAGCCCCAACTGTGCCTCTCCCATaGGCCACATTAGCCTGGGAGCCGACCAGTCCTATC +
Preference number: 3 (lower is better)
Translates to: SALSKAPTVPLP*ATLAWEPTSPI
Trigger: GATAGGACTGGTCGGCTCCCAGGCTAATGTGGCTCATGGGAGAGGCACAGTTGGGGCTTTAGAGAGAGCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR TCA 72 bp AGGAAAGGCAGAGAGACACTCATGTCTGTATGCAGGTaGGGGAGATTGGCCCCGCAGCTCCCAGCAGCACAT +
Preference number: 3 (lower is better)
Translates to: RKGRETLMSVCR*GRLAPQLPAAH
Trigger: ATGTGCTGCTGGGAGCTGCGGGGCCAATCTCCCTCACCTGCATACAGACATGAGTGTCTCTCTGCCTTTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR GCA 72 bp CCAGTCCCTCTTCAAGTTTCTTCCAGTTGGCCTAACTaGATAGGCGAGGACAGACTGTGCCAGTGGCACGGG +
Preference number: 3 (lower is better)
Translates to: PVPLQVSSSWPN*IGEDRLCQWHG
Trigger: CCCGTGCCACTGGCACAGTCTGTCCTCGCCTATGCAGTTAGGCCAACTGGAAGAAACTTGAAGAGGGACTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR GCA 72 bp CTAAGGACTGCTCTGACAGGCAACCTCGGCCTATGCTaGCCTTCCCAAACACTCACACATGCAGCAGTCTGG +
Preference number: 3 (lower is better)
Translates to: LRTALTGNLGLC*PSQTLTHAAVW
Trigger: CCAGACTGCTGCATGTGTGAGTGTTTGGGAAGGGCAGCATAGGCCGAGGTTGCCTGTCAGAGCAGTCCTTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR GCA 72 bp CACCTAAGGACTGCTCTGACAGGCAACCTCGGCCTATaGTGCCCTTCCCAAACACTCACACATGCAGCAGTC +
Preference number: 3 (lower is better)
Translates to: HLRTALTGNLGL*CPSQTLTHAAV
Trigger: GACTGCTGCATGTGTGAGTGTTTGGGAAGGGCAGCATAGGCCGAGGTTGCCTGTCAGAGCAGTCCTTAGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR CCA 72 bp CTGCCTACCCCAGTCCCTCTTCAAGTTTCTTCCAGTTaGCCTAACTGCATAGGCGAGGACAGACTGTGCCAG +
Preference number: 3 (lower is better)
Translates to: LPTPVPLQVSSS*PNCIGEDRLCQ
Trigger: CTGGCACAGTCTGTCCTCGCCTATGCAGTTAGGCCAACTGGAAGAAACTTGAAGAGGGACTGGGGTAGGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR TCA 72 bp CCTTCAGAAGCTAAAGACTGCTCCATCCTACCAGGATaGCTGAGCACCCGGCCTCAGTGTGCTCTGAGAACA +
Preference number: 3 (lower is better)
Translates to: PSEAKDCSILPG*LSTRPQCALRT
Trigger: TGTTCTCAGAGCACACTGAGGCCGGGTGCTCAGTCATCCTGGTAGGATGGAGCAGTCTTTAGCTTCTGAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR CCA 72 bp GGGGCAGAGCCACACTTAAGGCACCTAGAGTTGGAATaGACTCCAGTTCTGAGATCCACTGGAATGGTCAGG +
Preference number: 3 (lower is better)
Translates to: GAEPHLRHLELE*TPVLRSTGMVR
Trigger: CCTGACCATTCCAGTGGATCTCAGAACTGGAGTCCATTCCAACTCTAGGTGCCTTAAGTGTGGCTCTGCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR CCA 72 bp TCACCCCAGACACAGCAAAATGCTGTCCCTAGGAACTaGAAATCAGATGCCCAGGGCCAGGAGAAGCTTCAG +
Preference number: 3 (lower is better)
Translates to: SPQTQQNAVPRN*KSDAQGQEKLQ
Trigger: CTGAAGCTTCTCCTGGCCCTGGGCATCTGATTTCCAGTTCCTAGGGACAGCATTTTGCTGTGTCTGGGGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR TCA 72 bp CTTCATGCACACCCACCCTTCCAGCACTTCATTCAGTaGCAAATGAACCCCAGCCACAGTGTCCTAGAGCTG +
Preference number: 3 (lower is better)
Translates to: LHAHPPFQHFIQ*QMNPSHSVLEL
Trigger: CAGCTCTAGGACACTGTGGCTGGGGTTCATTTGTCACTGAATGAAGTGCTGGAAGGGTGGGTGTGCATGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR GCA 72 bp ATGCGCCCACCTCGTCCAGACTCCCTGTGGCTATGGTaGTCTGGACATGGAATGTGGATGTTTTCAGAATCT +
Preference number: 3 (lower is better)
Translates to: MRPPRPDSLWLW*SGHGMWMFSES
Trigger: AGATTCTGAAAACATCCACATTCCATGTCCAGAGCACCATAGCCACAGGGAGTCTGGACGAGGTGGGCGCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR CCA 72 bp AGAATGCGCCCACCTCGTCCAGACTCCCTGTGGCTATaGTGCTCTGGACATGGAATGTGGATGTTTTCAGAA +
Preference number: 3 (lower is better)
Translates to: RMRPPRPDSLWL*CSGHGMWMFSE
Trigger: TTCTGAAAACATCCACATTCCATGTCCAGAGCACCATAGCCACAGGGAGTCTGGACGAGGTGGGCGCATTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR CCA 72 bp GACACGGCCAAAGCACATCCTTTCTCTCAAGTACTCTaGGGCCCTGGTCTCATTACAGGTGACATTACAGGT +
Preference number: 3 (lower is better)
Translates to: DTAKAHPFSQVL*GPGLITGDITG
Trigger: ACCTGTAATGTCACCTGTAATGAGACCAGGGCCCCAGAGTACTTGAGAGAAAGGATGTGCTTTGGCCGTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR CCA 72 bp GACTCCCTGTGGCTATGGTGCTCTGGACATGGAATGTaGATGTTTTCAGAATCTGAGTCTATGGCTCACCCC +
Preference number: 3 (lower is better)
Translates to: DSLWLWCSGHGM*MFSESESMAHP
Trigger: GGGGTGAGCCATAGACTCAGATTCTGAAAACATCCACATTCCATGTCCAGAGCACCATAGCCACAGGGAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR GCA 72 bp ACATTACAGGTGACATGGTGCCTCAGAGACACTTCATaGACACCCACCCTTCCAGCACTTCATTCAGTGACA +
Preference number: 3 (lower is better)
Translates to: TLQVTWCLRDTS*TPTLPALHSVT
Trigger: TGTCACTGAATGAAGTGCTGGAAGGGTGGGTGTGCATGAAGTGTCTCTGAGGCACCATGTCACCTGTAATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR TCA 72 bp ACTGTAGCCACTGGTGTTCCTGGACAGTTTGACTTCTaGCTCGGCTTCTGCTTGTTCAGTTATTTACAAAGT +
Preference number: 3 (lower is better)
Translates to: TVATGVPGQFDF*LGFCLFSYLQS
Trigger: ACTTTGTAAATAACTGAACAAGCAGAAGCCGAGTCAGAAGTCAAACTGTCCAGGAACACCAGTGGCTACAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR TCA 72 bp CTTACCCTAATCTTTTACTTCACTATAATACCTCTGTaGACTAGGGGGCAGGGAACAAACACTGGGAAGAGA +
Preference number: 3 (lower is better)
Translates to: LTLIFYFTIIPL*TRGQGTNTGKR
Trigger: TCTCTTCCCAGTGTTTGTTCCCTGCCCCCTAGTTCACAGAGGTATTATAGTGAAGTAAAAGATTAGGGTAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
CDS-3UTR TCA 90 bp CTGCACCATCAGGTGCTGGCCCGGTACAGGGCCTGGGTCCAAACCCAGAACCACCCTGGCGTCGCGCCTTaGGCCGGTTCAGGACGCCGC +
Preference number: 4 (lower is better)
Translates to: LHHQVLARYRAWVQTQNHPGVAP*AGSGRR
Trigger: GCGGCGTCCTGAACCGGCTCAAGGCGCGACGCCAGG...GTGGTTCTGGGTTTGGACCCAGGCCCTGTACCGGGCCAGCACCTGATGGTGCAG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
CDS-3UTR GCA 90 bp GCTGCCCTTCCCAAACACTCACACATGCAGCAGTCTGGGGCAGGACCATGTGACAGGGCCAGCAGCTCCTaGTCCGTGACGGCGGCCCCG +
Preference number: 4 (lower is better)
Translates to: AALPKHSHMQQSGAGPCDRASSS*SVTAAP
Trigger: CGGGGCCGCCGTCACGGAGCAGGAGCTGCTGGCCCT...GTCACATGGTCCTGCCCCAGACTGCTGCATGTGTGAGTGTTTGGGAAGGGCAGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
CDS-3UTR TCA 90 bp CACACTAAACTCAAGAGACACCGTTCTGTGAACAGAACTGCCCAGGGCCACGGCGCAGCTCCTGCTCCGTaGCGGCGGCCCCGGAGCCGT +
Preference number: 4 (lower is better)
Translates to: HTKLKRHRSVNRTAQGHGAAPAP*RRPRSR
Trigger: ACGGCTCCGGGGCCGCCGTCACGGAGCAGGAGCTGC...GCCGTGGCCCTGGGCAGTTCTGTTCACAGAACGGTGTCTCTTGAGTTTAGTGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
CDS-3UTR GCA 90 bp CACACTAAACTCAAGAGACACCGTTCTGTGAACAGAACTGCCCAGGGCCACGGCTCTTCTTCTCCTCCTTaGCAGCCACCAGCCCGCCGG +
Preference number: 4 (lower is better)
Translates to: HTKLKRHRSVNRTAQGHGSSSPP*QPPARR
Trigger: CCGGCGGGCTGGTGGCTGGCAAGGAGGAGAAGAAGA...GCCGTGGCCCTGGGCAGTTCTGTTCACAGAACGGTGTCTCTTGAGTTTAGTGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
CDS-3UTR CCA 90 bp GGAACAAACACTGGGAAGAGAAACTGCTGGCTGGCACCTCCTTGGAGCACAAAACCGGAAACCTGTCACTaGCCTGTCACCCACAGTGAA +
Preference number: 4 (lower is better)
Translates to: GTNTGKRNCWLAPPWSTKPETCH*PVTHSE
Trigger: TTCACTGTGGGTGACAGGCCAGTGACAGGTTTCCGG...TTTTGTGCTCCAAGGAGGTGCCAGCCAGCAGTTTCTCTTCCCAGTGTTTGTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
3UTR CAA 72 bp GCACATGGGGCAGAGCCACACTTAAGGCACCTAGAGTaGGAATGGACTCCAGTTCTGAGATCCACTGGAATG +
Preference number: 4 (lower is better)
Translates to: AHGAEPHLRHLE*EWTPVLRSTGM
Trigger: CATTCCAGTGGATCTCAGAACTGGAGTCCATTCCAACTCTAGGTGCCTTAAGTGTGGCTCTGCCCCATGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
CDS TCA 90 bp CGGAGCCGTCGTCGGGCGTGTGTGGGGGCCCCTGGCGTCGCGCCTTaGGCCGGTTCAGGACGCCGCCGCCGGCCTTCTTCTTCTCCTCCT +
Preference number: 5 (lower is better)
Translates to: RSRRRACVGAPGVAP*AGSGRRRRPSSSPP
Trigger: AGGAGGAGAAGAAGAAGGCCGGCGGCGGCGTCCTGAACCGGCTCAAGGCGCGACGCCAGGGGCCCCCACACACGCCCGACGACGGCTCCG
73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
CDS-3UTR CAA 90 bp CTGCACCATCAGGTGCTGGCCCGGTACAGGGCCTGGGTCCAAACCCAGAACCACTTCTTCTTCTCCTCCTaGCCAGCCACCAGCCCGCCG +
Preference number: 5 (lower is better)
Translates to: LHHQVLARYRAWVQTQNHFFFSS*PATSPP
Trigger: CGGCGGGCTGGTGGCTGGCAAGGAGGAGAAGAAGAA...GTGGTTCTGGGTTTGGACCCAGGCCCTGTACCGGGCCAGCACCTGATGGTGCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
CDS TCA 90 bp GCCGCTCGATCATCCGGAAACCTGTCACTGGCCTGTCACCCACAGTaGACTCTACCGTGGCACCAACGGTCCGGAGGCGAAGAAACGCCG +
Preference number: 5 (lower is better)
Translates to: AARSSGNLSLACHPQ*TLPWHQRSGGEETP
Trigger: CGGCGTTTCTTCGCCTCCGGACCGTTGGTGCCACGGTAGAGTTCACTGTGGGTGACAGGCCAGTGACAGGTTTCCGGATGATCGAGCGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
CDS-3UTR CAA 90 bp GCACATCCTTTCTCTCAAGTACTCTGGGGCCCTGGTCTCATTACAGGTGACATTCCCTGGCGTCGCGCCTaGAGCCGGTTCAGGACGCCG +
Preference number: 5 (lower is better)
Translates to: AHPFSQVLWGPGLITGDIPWRRA*SRFRTP
Trigger: CGGCGTCCTGAACCGGCTCAAGGCGCGACGCCAGGG...AATGTCACCTGTAATGAGACCAGGGCCCCAGAGTACTTGAGAGAAAGGATGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
CDS TCA 90 bp ACCGTGGCACCAACGGTCCGGAGGCGAAGAAACGCCGGTGTGAACTaGTATCGAACGAAACGGCCCACACTGATATCCACGTCGACGCTC +
Preference number: 5 (lower is better)
Translates to: TVAPTVRRRRNAGVN*YRTKRPTLISTSTL
Trigger: GAGCGTCGACGTGGATATCAGTGTGGGCCGTTTCGTTCGATATCAGTTCACACCGGCGTTTCTTCGCCTCCGGACCGTTGGTGCCACGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
CDS-3UTR CAA 90 bp CACACTAAACTCAAGAGACACCGTTCTGTGAACAGAACTGCCCAGGGCCACGGCTTCTCGGTGACCCGGTaGAGGCGTAGGACGTGCTCG +
Preference number: 5 (lower is better)
Translates to: HTKLKRHRSVNRTAQGHGFSVTR*RRRTCS
Trigger: CGAGCACGTCCTACGCCTCAACCGGGTCACCGAGAA...GCCGTGGCCCTGGGCAGTTCTGTTCACAGAACGGTGTCTCTTGAGTTTAGTGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
CDS CCA 90 bp CGGCCCACACTGATATCCACGTCGACGCTCTCCTCCTCCGCATCCTaGTCTTGGTCTGAGATGCACGGCTTGGCAATCTCAAAGAGAACT +
Preference number: 5 (lower is better)
Translates to: RPTLISTSTLSSSAS*SWSEMHGLAISKRT
Trigger: AGTTCTCTTTGAGATTGCCAAGCCGTGCATCTCAGACCAAGACCAGGATGCGGAGGAGGAGAGCGTCGACGTGGATATCAGTGTGGGCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
CDS CAA 72 bp TCGTCGGGCGTGTGTGGGGGCCCCTGGCGTCGCGCCTaGAGCCGGTTCAGGACGCCGCCGCCGGCCTTCTTC +
Preference number: 6 (lower is better)
Translates to: SSGVCGGPWRRA*SRFRTPPPAFF
Trigger: GAAGAAGGCCGGCGGCGGCGTCCTGAACCGGCTCAAGGCGCGACGCCAGGGGCCCCCACACACGCCCGACGA
75% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
CDS CAA 90 bp CCGGAGCCGTCGTCGGGCGTGTGTGGGGGCCCCTGGCGTCGCGCCTaGAGCCGGTTCAGGACGCCGCCGCCGGCCTTCTTCTTCTCCTCC +
Preference number: 6 (lower is better)
Translates to: PEPSSGVCGGPWRRA*SRFRTPPPAFFFSS
Trigger: GGAGGAGAAGAAGAAGGCCGGCGGCGGCGTCCTGAACCGGCTCAAGGCGCGACGCCAGGGGCCCCCACACACGCCCGACGACGGCTCCGG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
CDS GCA 72 bp TCCTCCTTGCCAGCCACCAGCCCGCCGGGCCCAGCCTaGGAACCCGCAGTCGCAGCCTTCGGGTTCGACCCG +
Preference number: 6 (lower is better)
Translates to: SSLPATSPPGPA*EPAVAAFGFDP
Trigger: CGGGTCGAACCCGAAGGCTGCGACTGCGGGTTCGCAGGCTGGGCCCGGCGGGCTGGTGGCTGGCAAGGAGGA
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
CDS TCA 72 bp CCAACGGTCCGGAGGCGAAGAAACGCCGGTGTGAACTaGTATCGAACGAAACGGCCCACACTGATATCCACG +
Preference number: 6 (lower is better)
Translates to: PTVRRRRNAGVN*YRTKRPTLIST
Trigger: CGTGGATATCAGTGTGGGCCGTTTCGTTCGATATCAGTTCACACCGGCGTTTCTTCGCCTCCGGACCGTTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
CDS CCA 72 bp TCCACGTCGACGCTCTCCTCCTCCGCATCCTGGTCTTaGTCTGAGATGCACGGCTTGGCAATCTCAAAGAGA +
Preference number: 6 (lower is better)
Translates to: STSTLSSSASWS*SEMHGLAISKR
Trigger: TCTCTTTGAGATTGCCAAGCCGTGCATCTCAGACCAAGACCAGGATGCGGAGGAGGAGAGCGTCGACGTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
CDS CCA 72 bp CTGATATCCACGTCGACGCTCTCCTCCTCCGCATCCTaGTCTTGGTCTGAGATGCACGGCTTGGCAATCTCA +
Preference number: 6 (lower is better)
Translates to: LISTSTLSSSAS*SWSEMHGLAIS
Trigger: TGAGATTGCCAAGCCGTGCATCTCAGACCAAGACCAGGATGCGGAGGAGGAGAGCGTCGACGTGGATATCAG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
CDS CCA 72 bp CCTCCGCATCCTGGTCTTGGTCTGAGATGCACGGCTTaGCAATCTCAAAGAGAACTGTCCCCGTCTCCAGAT +
Preference number: 6 (lower is better)
Translates to: PPHPGLGLRCTA*QSQRELSPSPD
Trigger: ATCTGGAGACGGGGACAGTTCTCTTTGAGATTGCCAAGCCGTGCATCTCAGACCAAGACCAGGATGCGGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6
CDS TCA 72 bp AGCGCGTCTCATAGGGATTTTCAATCATCAGACGAATaGCGTCCTCGGAGAGCTGCGGGAACTCGTAGATGT +
Preference number: 6 (lower is better)
Translates to: SASHRDFQSSDE*RPRRAAGTRRC
Trigger: ACATCTACGAGTTCCCGCAGCTCTCCGAGGACGTCATTCGTCTGATGATTGAAAATCCCTATGAGACGCGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060798.6