RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for UHRF1BP1L (Mus musculus)

Ensembl gene IDs: ENSMUSG00000019951

Ensembl transcript IDs: ENSMUST00000020112.7, ENSMUST00000218607.2, ENSMUST00000218776.2, ENSMUST00000219712.2, ENSMUST00000220375.2

Found 281 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACCCTGGGCCGGTACCAGATCGTCGCGGTTCTCCTGCGTGCCCTCTaGGTTGGTGCTGACAGCCTCTGGAGAGGCTTCCCCACAAGTCTG +
Preference number: 1 (lower is better)
Translates to: TLGRYQIVAVLLRAL*VGADSLWRGFPTSL
Trigger: CAGACTTGTGGGGAAGCCTCTCCAGAGGCTGTCAGCACCAACTCAGAGGGCACGCAGGAGAACCGCGACGATCTGGTACCGGCCCAGGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR TCA 90 bp ACTGTGAAGGCAAAGGAACCTCTGGGCTCGTCTGGGTGGCTTGGGTaGCACTGCTGTGCATCCTCACGTCACACATCCCCCGGGTCCGCA +
Preference number: 1 (lower is better)
Translates to: TVKAKEPLGSSGWLG*HCCASSRHTSPGSA
Trigger: TGCGGACCCGGGGGATGTGTGACGTGAGGATGCACAGCAGTGTCACCCAAGCCACCCAGACGAGCCCAGAGGTTCCTTTGCCTTCACAGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR GCA 90 bp CGTGGCTGTCGCTTCCATCGCTCTCCGCCTGCTCTTCCAATACCATaGTGTCCAGGGAAAGGGTATCCAGGGAGACCTGTGAGGCGCTCC +
Preference number: 1 (lower is better)
Translates to: RGCRFHRSPPALPIP*CPGKGYPGRPVRRS
Trigger: GGAGCGCCTCACAGGTCTCCCTGGATACCCTTTCCCTGGACAGCATGGTATTGGAAGAGCAGGCGGAGAGCGATGGAAGCGACAGCCACG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR GCA 90 bp AACACCTTGCTGATGGCCAGCCAGGTGGGCAGGTCCAGCATGTTCTaGAGCACCTCCTCGTCCAGCTCCAGGTTCTTCAGCTCCCCCTCT +
Preference number: 1 (lower is better)
Translates to: NTLLMASQVGRSSMF*STSSSSSRFFSSPS
Trigger: AGAGGGGGAGCTGAAGAACCTGGAGCTGGACGAGGAGGTGCTGCAGAACATGCTGGACCTGCCCACCTGGCTGGCCATCAGCAAGGTGTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000219712.2
3UTR CCA 90 bp GCAATGGGCTCCCACTTTCAGAAGCAGGAGAGCGCAGAGCACTTGTaGGATTCACTGGATGAAGCAGCAGGGCAAGCTCCGCACTGCGAA +
Preference number: 1 (lower is better)
Translates to: AMGSHFQKQESAEHL*DSLDEAAGQAPHCE
Trigger: TTCGCAGTGCGGAGCTTGCCCTGCTGCTTCATCCAGTGAATCCCACAAGTGCTCTGCGCTCTCCTGCTTCTGAAAGTGGGAGCCCATTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR TCA 90 bp CGTGAGTGGCCATCGTATAGATGGAGCTCCTCAGACATGCTTGCATaGAGCATAAGGGACAGGCGGCCTTTCTTCCCACAGAACCCTGGG +
Preference number: 1 (lower is better)
Translates to: REWPSYRWSSSDMLA*SIRDRRPFFPQNPG
Trigger: CCCAGGGTTCTGTGGGAAGAAAGGCCGCCTGTCCCTTATGCTTCATGCAAGCATGTCTGAGGAGCTCCATCTATACGATGGCCACTCACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR GCA 90 bp TCTGAGTTGGTGCTGACAGCCTCTGGAGAGGCTTCCCCACAAGTCTaGGTATTTGCACTTGTGTTCACACTCTCTGCTGGGCTCTGGCAG +
Preference number: 1 (lower is better)
Translates to: SELVLTASGEASPQV*VFALVFTLSAGLWQ
Trigger: CTGCCAGAGCCCAGCAGAGAGTGTGAACACAAGTGCAAATACGCAGACTTGTGGGGAAGCCTCTCCAGAGGCTGTCAGCACCAACTCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR CCA 90 bp AGAAAGTTGGCTGACTGTGAAGGCAAAGGAACCTCTGGGCTCGTCTaGGTGGCTTGGGTGACACTGCTGTGCATCCTCACGTCACACATC +
Preference number: 1 (lower is better)
Translates to: RKLADCEGKGTSGLV*VAWVTLLCILTSHI
Trigger: GATGTGTGACGTGAGGATGCACAGCAGTGTCACCCAAGCCACCCAGACGAGCCCAGAGGTTCCTTTGCCTTCACAGTCAGCCAACTTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR TCA 90 bp TCTGGTCAGAACCAACTGGACGGTTACCAAGGTAATGCCGCAGACTaGCGTTGCCTAACTGACTTGGCGTCACCTGGTTCACCTGCAGAC +
Preference number: 1 (lower is better)
Translates to: SGQNQLDGYQGNAAD*RCLTDLASPGSPAD
Trigger: GTCTGCAGGTGAACCAGGTGACGCCAAGTCAGTTAGGCAACGTCAGTCTGCGGCATTACCTTGGTAACCGTCCAGTTGGTTCTGACCAGA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR GCA 90 bp CACTTGTGGGATTCACTGGATGAAGCAGCAGGGCAAGCTCCGCACTaGGAAGTAAAATTCCAACGCAAACAGAAGTCTGGGAAGCGGGGC +
Preference number: 1 (lower is better)
Translates to: HLWDSLDEAAGQAPH*EVKFQRKQKSGKRG
Trigger: GCCCCGCTTCCCAGACTTCTGTTTGCGTTGGAATTTTACTTCGCAGTGCGGAGCTTGCCCTGCTGCTTCATCCAGTGAATCCCACAAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR GCA 90 bp GGTGCTGACAGCCTCTGGAGAGGCTTCCCCACAAGTCTGCGTATTTaGACTTGTGTTCACACTCTCTGCTGGGCTCTGGCAGCTTGTATT +
Preference number: 1 (lower is better)
Translates to: GADSLWRGFPTSLRI*TCVHTLCWALAACI
Trigger: AATACAAGCTGCCAGAGCCCAGCAGAGAGTGTGAACACAAGTGCAAATACGCAGACTTGTGGGGAAGCCTCTCCAGAGGCTGTCAGCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR CCA 90 bp GCAAGCTCCGCACTGCGAAGTAAAATTCCAACGCAAACAGAAGTCTaGGAAGCGGGGCTTCCAATCACAGCTTCCACATCCCTCCGCAAG +
Preference number: 1 (lower is better)
Translates to: ASSALRSKIPTQTEV*EAGLPITASTSLRK
Trigger: CTTGCGGAGGGATGTGGAAGCTGTGATTGGAAGCCCCGCTTCCCAGACTTCTGTTTGCGTTGGAATTTTACTTCGCAGTGCGGAGCTTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR TCA 90 bp CTTTCAGAAGCAGGAGAGCGCAGAGCACTTGTGGGATTCACTGGATaGAGCAGCAGGGCAAGCTCCGCACTGCGAAGTAAAATTCCAACG +
Preference number: 1 (lower is better)
Translates to: LSEAGERRALVGFTG*SSRASSALRSKIPT
Trigger: CGTTGGAATTTTACTTCGCAGTGCGGAGCTTGCCCTGCTGCTTCATCCAGTGAATCCCACAAGTGCTCTGCGCTCTCCTGCTTCTGAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR TCA 90 bp TGCACTTGTGTTCACACTCTCTGCTGGGCTCTGGCAGCTTGTATTTaGGTTCCTTTTCATTGCCTTCCCCAGCAACACGTGGCTGTCGCT +
Preference number: 1 (lower is better)
Translates to: CTCVHTLCWALAACI*VPFHCLPQQHVAVA
Trigger: AGCGACAGCCACGTGTTGCTGGGGAAGGCAATGAAAAGGAACTCAAATACAAGCTGCCAGAGCCCAGCAGAGAGTGTGAACACAAGTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR TCA 90 bp TTCCAATACCATGCTGTCCAGGGAAAGGGTATCCAGGGAGACCTGTaGGGCGCTCCTTTTCATGTTCTTGTAGGAAACAGAGAGTGGAGC +
Preference number: 1 (lower is better)
Translates to: FQYHAVQGKGIQGDL*GAPFHVLVGNREWS
Trigger: GCTCCACTCTCTGTTTCCTACAAGAACATGAAAAGGAGCGCCTCACAGGTCTCCCTGGATACCCTTTCCCTGGACAGCATGGTATTGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR GCA 90 bp CGGATCCTGAATCCGAGTAAATCTCAGGTCTCCGTGCTCCCACTGTaGATTGACACTGTAGATACGGAGCTGAGAAAGCTCAAAGGAAGC +
Preference number: 1 (lower is better)
Translates to: RILNPSKSQVSVLPL*IDTVDTELRKLKGS
Trigger: GCTTCCTTTGAGCTTTCTCAGCTCCGTATCTACAGTGTCAATGCACAGTGGGAGCACGGAGACCTGAGATTTACTCGGATTCAGGATCCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219712.2
3UTR CCA 90 bp CAAGTCTGCGTATTTGCACTTGTGTTCACACTCTCTGCTGGGCTCTaGCAGCTTGTATTTGAGTTCCTTTTCATTGCCTTCCCCAGCAAC +
Preference number: 1 (lower is better)
Translates to: QVCVFALVFTLSAGL*QLVFEFLFIAFPSN
Trigger: GTTGCTGGGGAAGGCAATGAAAAGGAACTCAAATACAAGCTGCCAGAGCCCAGCAGAGAGTGTGAACACAAGTGCAAATACGCAGACTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR TCA 90 bp GGGGCGTGGCTGAGGTCAACACTCATTGACCTGTTGTCTGACATGTaGTTGAGAGTAGCATTTCTAATTCGGTGTATACCACTACCACCT +
Preference number: 1 (lower is better)
Translates to: GAWLRSTLIDLLSDM*LRVAFLIRCIPLPP
Trigger: AGGTGGTAGTGGTATACACCGAATTAGAAATGCTACTCTCAATCACATGTCAGACAACAGGTCAATGAGTGTTGACCTCAGCCACGCCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR GCA 90 bp GTCACTTGCCCAGTGCCCTGTATTTGTGCTTTGATTTTACACGAGTaGCTCACTGAAGCCTCCCCATCACTTAAGGTGACTTTCCTTTCA +
Preference number: 1 (lower is better)
Translates to: VTCPVPCICALILHE*LTEASPSLKVTFLS
Trigger: TGAAAGGAAAGTCACCTTAAGTGATGGGGAGGCTTCAGTGAGGCACTCGTGTAAAATCAAAGCACAAATACAGGGCACTGGGCAAGTGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
3UTR CCA 90 bp CTGGCAAATCCAGATAGACAGAGGGAAAGCATCTACAAAGCTTACTaGCCGCCCCTTCCCGCTTTTCATCCCTTCATAGTCTATCCAAAA +
Preference number: 1 (lower is better)
Translates to: LANPDRQRESIYKAY*PPLPAFHPFIVYPK
Trigger: TTTTGGATAGACTATGAAGGGATGAAAAGCGGGAAGGGGCGGCCAGTAAGCTTTGTAGATGCTTTCCCTCTGTCTATCTGGATTTGCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR TCA 90 bp GGCCCACTTTCAAACCTCAGAGAAATCTCAGGCGAGGATTTAGGATaGATTATAGCTTTCTGGTCAGAACCAACTGGACGGTTACCAAGG +
Preference number: 1 (lower is better)
Translates to: GPLSNLREISGEDLG*IIAFWSEPTGRLPR
Trigger: CCTTGGTAACCGTCCAGTTGGTTCTGACCAGAAAGCTATAATTCATCCTAAATCCTCGCCTGAGATTTCTCTGAGGTTTGAAAGTGGGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR TCA 90 bp CCAGCCAGATCACTGGACTCACTTTGTGAGGTATTAAGGGTCACTTaGTCACAAGTCTGGAACTCTTTCTGTAGCTCTGCGTATCTTGTT +
Preference number: 1 (lower is better)
Translates to: PARSLDSLCEVLRVT*SQVWNSFCSSAYLV
Trigger: AACAAGATACGCAGAGCTACAGAAAGAGTTCCAGACTTGTGATCAAGTGACCCTTAATACCTCACAAAGTGAGTCCAGTGATCTGGCTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR TCA 90 bp TTTCTTCCTCTTCATTCGGCCAGCCAGATCACTGGACTCACTTTGTaGGGTATTAAGGGTCACTTGATCACAAGTCTGGAACTCTTTCTG +
Preference number: 1 (lower is better)
Translates to: FLPLHSASQITGLTL*GIKGHLITSLELFL
Trigger: CAGAAAGAGTTCCAGACTTGTGATCAAGTGACCCTTAATACCTCACAAAGTGAGTCCAGTGATCTGGCTGGCCGAATGAAGAGGAAGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR TCA 90 bp TTGTTCCATAGAAAACTTGTATGTTTATGTAGAACAGGTCAGTCCTaGGAAACAGCGTCAGCTCAGAAGTTCATGTCCCATCCGTCCTCC +
Preference number: 1 (lower is better)
Translates to: LFHRKLVCLCRTGQS*ETASAQKFMSHPSS
Trigger: GGAGGACGGATGGGACATGAACTTCTGAGCTGACGCTGTTTCTCAGGACTGACCTGTTCTACATAAACATACAAGTTTTCTATGGAACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
3UTR TCA 90 bp GCTACGTTAGCATCCTACCACAAGCTATACTCCCAGCCCGTGACATaGAACTCTAACACAGGAAACATCCAGCAAACATGTGAATCTAAA +
Preference number: 1 (lower is better)
Translates to: ATLASYHKLYSQPVT*NSNTGNIQQTCESK
Trigger: TTTAGATTCACATGTTTGCTGGATGTTTCCTGTGTTAGAGTTTCATGTCACGGGCTGGGAGTATAGCTTGTGGTAGGATGCTAACGTAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219712.2
3UTR CCA 90 bp TCACAAGTCTGGAACTCTTTCTGTAGCTCTGCGTATCTTGTTGGCTaGCAAATCCAGATAGACAGAGGGAAAGCATCTACAAAGCTTACT +
Preference number: 1 (lower is better)
Translates to: SQVWNSFCSSAYLVG*QIQIDRGKASTKLT
Trigger: AGTAAGCTTTGTAGATGCTTTCCCTCTGTCTATCTGGATTTGCCAGCCAACAAGATACGCAGAGCTACAGAAAGAGTTCCAGACTTGTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR GCA 90 bp GGAATGACAAACTTTAGCATTAAGCCGTCAACTCGGATGTCAACATaGTCATCGGATTTTGAGCTGTCATTCAACTTGTACACAGCCATG +
Preference number: 1 (lower is better)
Translates to: GMTNFSIKPSTRMST*SSDFELSFNLYTAM
Trigger: CATGGCTGTGTACAAGTTGAATGACAGCTCAAAATCCGATGAGCATGTTGACATCCGAGTTGACGGCTTAATGCTAAAGTTTGTCATTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR TCA 90 bp TTCATTGGCATTACTGTTGCAACAGTTTCATCCTCCAGAAAGTGTTaGATATTCAGAAGGGAAGAGGTAAGGAACTCAGTAGTAAAGTTC +
Preference number: 1 (lower is better)
Translates to: FIGITVATVSSSRKC*IFRREEVRNSVVKF
Trigger: GAACTTTACTACTGAGTTCCTTACCTCTTCCCTTCTGAATATTCAACACTTTCTGGAGGATGAAACTGTTGCAACAGTAATGCCAATGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR-3UTR CCA 90 bp CACTCCTCTCCACCACGAGACGGTCAATATGCACAGTCACAGGGCTCGGCTGCACTTCCCACAGAACCCTaGGCCGGTACCAGATCGTCG +
Preference number: 2 (lower is better)
Translates to: HSSPPRDGQYAQSQGSAALPTEP*AGTRSS
Trigger: CGACGATCTGGTACCGGCCCAGGGTTCTGTGGGAAG...TGCAGCCGAGCCCTGTGACTGTGCATATTGACCGTCTCGTGGTGGAGAGGAGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR-3UTR CCA 90 bp CACTCCTCTCCACCACGAGACGGTCAATATGCACAGTCACAGGGCTCGGCTGCAGTAGGAAACAGAGAGTaGAGCTGGGGAGGGTGGGCA +
Preference number: 2 (lower is better)
Translates to: HSSPPRDGQYAQSQGSAAVGNRE*SWGGWA
Trigger: TGCCCACCCTCCCCAGCTCCACTCTCTGTTTCCTAC...TGCAGCCGAGCCCTGTGACTGTGCATATTGACCGTCTCGTGGTGGAGAGGAGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR CAA 90 bp GAAGCAATGGGCTCCCACTTTCAGAAGCAGGAGAGCGCAGAGCACTaGTGGGATTCACTGGATGAAGCAGCAGGGCAAGCTCCGCACTGC +
Preference number: 2 (lower is better)
Translates to: EAMGSHFQKQESAEH*WDSLDEAAGQAPHC
Trigger: GCAGTGCGGAGCTTGCCCTGCTGCTTCATCCAGTGAATCCCACAAGTGCTCTGCGCTCTCCTGCTTCTGAAAGTGGGAGCCCATTGCTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR-3UTR TCA 90 bp CTGGCTGGGGGCGCCTCCTCTTTACTGCTCTCCGGGTTCTCAGAGAGGGAAGCTGTTTGTGTCACTGGCTaGTTTGAAAAGCAACGGATC +
Preference number: 2 (lower is better)
Translates to: LAGGASSLLLSGFSEREAVCVTG*FEKQRI
Trigger: GATCCGTTGCTTTTCAAATCAGCCAGTGACACAAAC...AGCTTCCCTCTCTGAGAACCCGGAGAGCAGTAAAGAGGAGGCGCCCCCAGCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR-3UTR TCA 90 bp CGACACGGAGCACAGAGCATGCTAAAAGAATCCTCTCCTCCTCTTTCGTCTCACTGCAGAACACCTTGCTaGTGGCCAGCCAGGTGGGCA +
Preference number: 2 (lower is better)
Translates to: RHGAQSMLKESSPPLSSHCRTPC*WPARWA
Trigger: TGCCCACCTGGCTGGCCATCAGCAAGGTGTTCTGCA...GTGAGACGAAAGAGGAGGAGAGGATTCTTTTAGCATGCTCTGTGCTCCGTGTCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219712.2
3UTR CAA 90 bp AGTTTTGTCCATGGAATCCTGATGGAGGCTTTATTGCAGAACACCTaGCTGATGGCCAGCCAGGTGGGCAGGTCCAGCATGTTCTGCAGC +
Preference number: 2 (lower is better)
Translates to: SFVHGILMEALLQNT*LMASQVGRSSMFCS
Trigger: GCTGCAGAACATGCTGGACCTGCCCACCTGGCTGGCCATCAGCAAGGTGTTCTGCAATAAAGCCTCCATCAGGATTCCATGGACAAAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219712.2
3UTR-3UTR GCA 90 bp GCTCAGAAGTTCATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATAACTGTGTTACAGTGTaGGCAGCCTTCACGGGGCCA +
Preference number: 2 (lower is better)
Translates to: AQKFMSHPSSSVRLLLLNNCVTV*AAFTGP
Trigger: TGGCCCCGTGAAGGCTGCGCACACTGTAACACAGTT...ATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATGAACTTCTGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
3UTR CAA 90 bp TTGCACTTGTGTTCACACTCTCTGCTGGGCTCTGGCAGCTTGTATTaGAGTTCCTTTTCATTGCCTTCCCCAGCAACACGTGGCTGTCGC +
Preference number: 2 (lower is better)
Translates to: LHLCSHSLLGSGSLY*SSFSLPSPATRGCR
Trigger: GCGACAGCCACGTGTTGCTGGGGAAGGCAATGAAAAGGAACTCAAATACAAGCTGCCAGAGCCCAGCAGAGAGTGTGAACACAAGTGCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR-3UTR TCA 90 bp ATTCCCAGAGCAAGAGTGCTGTATCTGTGCCAGCTTTCTACAAGCACAGGCGACGCTCCCACTGTGCATTaGCACTGTAGATACGGAGCT +
Preference number: 2 (lower is better)
Translates to: IPRARVLYLCQLSTSTGDAPTVH*HCRYGA
Trigger: AGCTCCGTATCTACAGTGTCAATGCACAGTGGGAGC...GTCGCCTGTGCTTGTAGAAAGCTGGCACAGATACAGCACTCTTGCTCTGGGAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219712.2
3UTR-3UTR CCA 90 bp CACGTGAGTGGCCATCGTATAGATGGAGCTCCTCAGACATGCTTGCATGAAGCAGACAGTGCCTCGTGTTaGTGGCTATCATTTCAGAGC +
Preference number: 2 (lower is better)
Translates to: HVSGHRIDGAPQTCLHEADSASC*WLSFQS
Trigger: GCTCTGAAATGATAGCCACCAACACGAGGCACTGTC...TGCTTCATGCAAGCATGTCTGAGGAGCTCCATCTATACGATGGCCACTCACGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR-3UTR TCA 90 bp AAGTTCATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATCCATACGTCACCCGAAAAGAATaGTGTGAGGAGAAGGAAGGC +
Preference number: 2 (lower is better)
Translates to: KFMSHPSSSVRLLLLNPYVTRKE*CEEKEG
Trigger: GCCTTCCTTCTCCTCACATCATTCTTTTCGGGTGAC...GTATGGATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATGAACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
3UTR-3UTR CCA 90 bp CACGTGAGTGGCCATCGTATAGATGGAGCTCCTCAGACATGCTTGCATGAAGCACACTATCTGAGTCTGTaGAAGCCACATCCTTTGTGT +
Preference number: 2 (lower is better)
Translates to: HVSGHRIDGAPQTCLHEAHYLSL*KPHPLC
Trigger: ACACAAAGGATGTGGCTTCCACAGACTCAGATAGTG...TGCTTCATGCAAGCATGTCTGAGGAGCTCCATCTATACGATGGCCACTCACGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR-3UTR TCA 90 bp GATGGCTGTAATTCCGGCCAACATGCAAAGCACCATGAGTGTCATAGCAAGGGCCCTGTATTTGTGCTTTaGTTTTACACGAGTGCCTCA +
Preference number: 2 (lower is better)
Translates to: DGCNSGQHAKHHECHSKGPVFVL*FYTSAS
Trigger: TGAGGCACTCGTGTAAAATCAAAGCACAAATACAGG...GCCCTTGCTATGACACTCATGGTGCTTTGCATGTTGGCCGGAATTACAGCCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
3UTR-3UTR TCA 90 bp GGGCAAGCTCCGCACTGCGAAGTAAAATTCCAACGCAAACAGAAGTCTGGGAAGGTATTAAGGGTCACTTaGTCACAAGTCTGGAACTCT +
Preference number: 2 (lower is better)
Translates to: GQAPHCEVKFQRKQKSGKVLRVT*SQVWNS
Trigger: AGAGTTCCAGACTTGTGATCAAGTGACCCTTAATAC...CTTCCCAGACTTCTGTTTGCGTTGGAATTTTACTTCGCAGTGCGGAGCTTGCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR-3UTR TCA 90 bp CACGTGAGTGGCCATCGTATAGATGGAGCTCCTCAGACATGCTTGCATGAAGCATGTCACTGGCTGATTTaGAAAGCAACGGATCCTTTA +
Preference number: 2 (lower is better)
Translates to: HVSGHRIDGAPQTCLHEACHWLI*KATDPL
Trigger: TAAAGGATCCGTTGCTTTTCAAATCAGCCAGTGACA...TGCTTCATGCAAGCATGTCTGAGGAGCTCCATCTATACGATGGCCACTCACGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR-3UTR GCA 90 bp CGACACGGAGCACAGAGCATGCTAAAAGAATCCTCTCCTCCTCTTTCGTCTCACACTTTGGGTAGCATCTaGCTCAATTCGAATCATCTG +
Preference number: 2 (lower is better)
Translates to: RHGAQSMLKESSPPLSSHTLGSI*LNSNHL
Trigger: CAGATGATTCGAATTGAGGCAGATGCTACCCAAAGT...GTGAGACGAAAGAGGAGGAGAGGATTCTTTTAGCATGCTCTGTGCTCCGTGTCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219712.2
3UTR-3UTR TCA 90 bp GGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCCTTCTACCAGTTACAGGGTTTaGAGGTGGGTTATGGTTGCC +
Preference number: 2 (lower is better)
Translates to: GKLPTNWLHPSVKPSRPSTSYRV*RWVMVA
Trigger: GGCAACCATAACCCACCTTCAAACCCTGTAACTGGT...AGAAGGACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR-3UTR TCA 90 bp CCCAGTGGACTCTCACGCTCTCACCCTCTTACCGCTGATTTCTTCATTTATCTATTGTCCATGGAATCCTaGTGGAGGCTTTATTGCAGA +
Preference number: 2 (lower is better)
Translates to: PSGLSRSHPLTADFFIYLLSMES*WRLYCR
Trigger: TCTGCAATAAAGCCTCCATCAGGATTCCATGGACAA...TAGATAAATGAAGAAATCAGCGGTAAGAGGGTGAGAGCGTGAGAGTCCACTGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219712.2
3UTR-3UTR GCA 90 bp GATGGCTGTAATTCCGGCCAACATGCAAAGCACCATGAGTGTCATAGCAAGGGCTTCACATTTTCAAGTTaGTTCACAAGTTCGGTAGGG +
Preference number: 2 (lower is better)
Translates to: DGCNSGQHAKHHECHSKGFTFSS*FTSSVG
Trigger: CCCTACCGAACTTGTGAAGCAACTTGAAAATGTGAA...GCCCTTGCTATGACACTCATGGTGCTTTGCATGTTGGCCGGAATTACAGCCATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
3UTR-3UTR CCA 90 bp TATTTGAGTTCCTTTTCATTGCCTTCCCCAGCAACACGTGGCTGTCGCTTCCATGCGTATCTTGTTGGCTaGCAAATCCAGATAGACAGA +
Preference number: 2 (lower is better)
Translates to: YLSSFSLPSPATRGCRFHAYLVG*QIQIDR
Trigger: TCTGTCTATCTGGATTTGCCAGCCAACAAGATACGC...ATGGAAGCGACAGCCACGTGTTGCTGGGGAAGGCAATGAAAAGGAACTCAAATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR-3UTR CCA 90 bp CGACACGGAGCACAGAGCATGCTAAAAGAATCCTCTCCTCCTCTTTCGTCTCACTCAAGATGTGAACTTTaGGTAGCATCTGCCTCAATT +
Preference number: 2 (lower is better)
Translates to: RHGAQSMLKESSPPLSSHSRCEL*VASASI
Trigger: AATTGAGGCAGATGCTACCCAAAGTTCACATCTTGA...GTGAGACGAAAGAGGAGGAGAGGATTCTTTTAGCATGCTCTGTGCTCCGTGTCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219712.2
3UTR-3UTR TCA 90 bp GGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCCTTCTAGCTCCATTTTAGCTTaGGCTAGTCTCTGCCTGAGA +
Preference number: 2 (lower is better)
Translates to: GKLPTNWLHPSVKPSRPSSSILA*ASLCLR
Trigger: TCTCAGGCAGAGACTAGCTCAAGCTAAAATGGAGCT...AGAAGGACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR-3UTR GCA 90 bp GCTCAGAAGTTCATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATTTGGCTCCCAAACAGTaGCTGTTTTTATCAAATGAT +
Preference number: 2 (lower is better)
Translates to: AQKFMSHPSSSVRLLLLNLAPKQ*LFLSND
Trigger: ATCATTTGATAAAAACAGGCACTGTTTGGGAGCCAA...ATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATGAACTTCTGAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
3UTR-3UTR CCA 90 bp TTTGTAGCCGAGCTCCAGAGGCTTCTGTCCTCTGTCAATAAAGAGAAAGTATCTAGTGCCTCGTGTTGGTaGCTATCATTTCAGAGCTCT +
Preference number: 2 (lower is better)
Translates to: FVAELQRLLSSVNKEKVSSASCW*LSFQSS
Trigger: AGAGCTCTGAAATGATAGCCACCAACACGAGGCACT...AGATACTTTCTCTTTATTGACAGAGGACAGAAGCCTCTGGAGCTCGGCTACAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR-3UTR TCA 90 bp TGGAACAGCCGCCACTTCACCACTCGCTTTATTTCATGTAAAGGAAAACTTCCCCCCCATCACTTAAGGTaGCTTTCCTTTCACATTTTC +
Preference number: 2 (lower is better)
Translates to: WNSRHFTTRFISCKGKLPPHHLR*LSFHIF
Trigger: GAAAATGTGAAAGGAAAGTCACCTTAAGTGATGGGG...GGGAAGTTTTCCTTTACATGAAATAAAGCGAGTGGTGAAGTGGCGGCTGTTCCA
44% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
3UTR-3UTR TCA 90 bp CCCAGTGGACTCTCACGCTCTCACCCTCTTACCGCTGATTTCTTCATTTATCTAAGTAAAGACCACTGTTaGGAAGTTTCTTCTTCCTCT +
Preference number: 2 (lower is better)
Translates to: PSGLSRSHPLTADFFIYLSKDHC*EVSSSS
Trigger: AGAGGAAGAAGAAACTTCTCAACAGTGGTCTTTACT...TAGATAAATGAAGAAATCAGCGGTAAGAGGGTGAGAGCGTGAGAGTCCACTGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219712.2
3UTR-3UTR CCA 90 bp GCAGCCCAAAAGACCATCTTACTTACTCTTCTTTTAAGGGTGACTCGGATTTTTACCGTTAGGGGCTCGTaGCTCTTCACATGTACTCAT +
Preference number: 2 (lower is better)
Translates to: AAQKTILLTLLLRVTRIFTVRGS*LFTCTH
Trigger: ATGAGTACATGTGAAGAGCCACGAGCCCCTAACGGT...AAAAATCCGAGTCACCCTTAAAAGAAGAGTAAGTAAGATGGTCTTTTGGGCTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000219712.2
3UTR CAA 90 bp CGAAAGCAGAACGAGAGACTCGTGTATGAAAAGCAGCAGCAGATATaGGTAGTGATTGATCTGCATACTGACATGTTTATGAACACGGAC +
Preference number: 2 (lower is better)
Translates to: RKQNERLVYEKQQQI*VVIDLHTDMFMNTD
Trigger: GTCCGTGTTCATAAACATGTCAGTATGCAGATCAATCACTACCAATATCTGCTGCTGCTTTTCATACACGAGTCTCTCGTTCTGCTTTCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR CAA 90 bp AAGGAAGCATTGAAAGCTTTCGCTCCAATTCTGATGACGATAGAGTaGACAGAAACAGTAATTCCCTCAACAACCTTCTCAGCAAAGCCG +
Preference number: 2 (lower is better)
Translates to: KEALKAFAPILMTIE*TETVIPSTTFSAKP
Trigger: CGGCTTTGCTGAGAAGGTTGTTGAGGGAATTACTGTTTCTGTCAACTCTATCGTCATCAGAATTGGAGCGAAAGCTTTCAATGCTTCCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219712.2
3UTR CAA 90 bp AGGAAAACCTTAAAAATGTGTCTGATGAAGGTCTTTGGCCGCCATTaGTCAGAGGCTCAGACTCTGTACTGTAATACTCCTTCAAGAGTT +
Preference number: 2 (lower is better)
Translates to: RKTLKMCLMKVFGRH*SEAQTLYCNTPSRV
Trigger: AACTCTTGAAGGAGTATTACAGTACAGAGTCTGAGCCTCTGACAAATGGCGGCCAAAGACCTTCATCAGACACATTTTTAAGGTTTTCCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR-3UTR TCA 90 bp CGAAAGCAGAACGAGAGACTCGTGTATGAAAAGCAGCAGCAGATATTGGTAGTGCACTCTTTAAAGTCTTaGCACAAAGCTTCTAGATCA +
Preference number: 2 (lower is better)
Translates to: RKQNERLVYEKQQQILVVHSLKS*HKASRS
Trigger: TGATCTAGAAGCTTTGTGTCAAGACTTTAAAGAGTG...CACTACCAATATCTGCTGCTGCTTTTCATACACGAGTCTCTCGTTCTGCTTTCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR-3UTR TCA 90 bp GTTTGGAACAGCCGCCACTTCACCACTCGCTTTATTTCATGTAAAGGAAAACTTCTGGCAGCTTGTATTTaGGTTCCTTTTCATTGCCTT +
Preference number: 2 (lower is better)
Translates to: VWNSRHFTTRFISCKGKLLAACI*VPFHCL
Trigger: AAGGCAATGAAAAGGAACTCAAATACAAGCTGCCAG...AAGTTTTCCTTTACATGAAATAAAGCGAGTGGTGAAGTGGCGGCTGTTCCAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR-3UTR GCA 90 bp GGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCCTTCTAGTGCCCTGTATTTGTaGTTTGATTTTACACGAGTG +
Preference number: 2 (lower is better)
Translates to: GKLPTNWLHPSVKPSRPSSALYL*FDFTRV
Trigger: CACTCGTGTAAAATCAAAGCACAAATACAGGGCACT...AGAAGGACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
3UTR-3UTR CCA 90 bp CACAAGTCTGGAACTCTTTCTGTAGCTCTGCGTATCTTGTTGGCTGGCAAATCCAAACTTCCCACTAACTaGTTACATCCTTCTGTTAAA +
Preference number: 2 (lower is better)
Translates to: HKSGTLSVALRILLAGKSKLPTN*LHPSVK
Trigger: TTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTT...GGATTTGCCAGCCAACAAGATACGCAGAGCTACAGAAAGAGTTCCAGACTTGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR-3UTR CCA 90 bp GACGATAGAGTTGACAGAAACAGTAATTCCCTCAACAACCTTCTCAGCAAAGCCTTTCAGTTTTGTCCATaGAATCCTGATGGAGGCTTT +
Preference number: 2 (lower is better)
Translates to: DDRVDRNSNSLNNLLSKAFQFCP*NPDGGF
Trigger: AAAGCCTCCATCAGGATTCCATGGACAAAACTGAAA...GGCTTTGCTGAGAAGGTTGTTGAGGGAATTACTGTTTCTGTCAACTCTATCGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219712.2
3UTR-3UTR TCA 90 bp GTTTGGAACAGCCGCCACTTCACCACTCGCTTTATTTCATGTAAAGGAAAACTTATGCTCATCGGATTTTaGGCTGTCATTCAACTTGTA +
Preference number: 2 (lower is better)
Translates to: VWNSRHFTTRFISCKGKLMLIGF*AVIQLV
Trigger: TACAAGTTGAATGACAGCTCAAAATCCGATGAGCAT...AAGTTTTCCTTTACATGAAATAAAGCGAGTGGTGAAGTGGCGGCTGTTCCAAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR-3UTR CCA 90 bp GGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCCTTCTATTAAGATTCTCTCATaGTGTTTTCAACCTTATCCC +
Preference number: 2 (lower is better)
Translates to: GKLPTNWLHPSVKPSRPSIKILS*CFQPYP
Trigger: GGGATAAGGTTGAAAACACCATGAGAGAATCTTAAT...AGAAGGACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
3UTR-3UTR CCA 90 bp TCCGCATCTGAAGAGGAAGAGGAAAACCTTAAAAATGTGTCTGATGAAGGTCTTAAATCCAGCAGAAACTaGTTTAACCACAGAATGCTC +
Preference number: 2 (lower is better)
Translates to: SASEEEEENLKNVSDEGLKSSRN*FNHRML
Trigger: GAGCATTCTGTGGTTAAACCAGTTTCTGCTGGATTT...AAGACCTTCATCAGACACATTTTTAAGGTTTTCCTCTTCCTCTTCAGATGCGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR-3UTR TCA 90 bp AGACTCGTGTATGAAAAGCAGCAGCAGATATTGGTAGTGATTGATCTGCATACTTCACTTCAGAAGGAATaGCAAACTTTAGCATTAAGC +
Preference number: 2 (lower is better)
Translates to: RLVYEKQQQILVVIDLHTSLQKE*QTLALS
Trigger: GCTTAATGCTAAAGTTTGTCATTCCTTCTGAAGTGA...AGTATGCAGATCAATCACTACCAATATCTGCTGCTGCTTTTCATACACGAGTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR-3UTR GCA 90 bp AGCTGTCTCATGGCCTATCTGGATATAGTTCTATTGAGGAATGTGAAGTTTAAAATAAATTCAGCAATCTaGATGAGCACAACAGGTCTT +
Preference number: 2 (lower is better)
Translates to: SCLMAYLDIVLLRNVKFKINSAI*MSTTGL
Trigger: AAGACCTGTTGTGCTCATGCAGATTGCTGAATTTAT...TTTAAACTTCACATTCCTCAATAGAACTATATCCAGATAGGCCATGAGACAGCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
3UTR CAA 90 bp AAAGAACAGTCCAGCTGTCTCATGGCCTATCTGGATATAGTTCTATaGAGGAATGTGAAGTTTAAAATAGACACCACTTACTTTAATTCT +
Preference number: 2 (lower is better)
Translates to: KEQSSCLMAYLDIVL*RNVKFKIDTTYFNS
Trigger: AGAATTAAAGTAAGTGGTGTCTATTTTAAACTTCACATTCCTCAATAGAACTATATCCAGATAGGCCATGAGACAGCTGGACTGTTCTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
3UTR-3UTR CCA 90 bp AGCTGTCTCATGGCCTATCTGGATATAGTTCTATTGAGGAATGTGAAGTTTAAAAAACTTCCCACTAACTaGTTACATCCTTCTGTTAAA +
Preference number: 2 (lower is better)
Translates to: SCLMAYLDIVLLRNVKFKKLPTN*LHPSVK
Trigger: TTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTT...TTTAAACTTCACATTCCTCAATAGAACTATATCCAGATAGGCCATGAGACAGCT
36% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
3UTR TCA 72 bp CGGTACCAGATCGTCGCGGTTCTCCTGCGTGCCCTCTaGGTTGGTGCTGACAGCCTCTGGAGAGGCTTCCCC +
Preference number: 3 (lower is better)
Translates to: RYQIVAVLLRAL*VGADSLWRGFP
Trigger: GGGGAAGCCTCTCCAGAGGCTGTCAGCACCAACTCAGAGGGCACGCAGGAGAACCGCGACGATCTGGTACCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR CCA 72 bp GCTGACTGTGAAGGCAAAGGAACCTCTGGGCTCGTCTaGGTGGCTTGGGTGACACTGCTGTGCATCCTCACG +
Preference number: 3 (lower is better)
Translates to: ADCEGKGTSGLV*VAWVTLLCILT
Trigger: CGTGAGGATGCACAGCAGTGTCACCCAAGCCACCCAGACGAGCCCAGAGGTTCCTTTGCCTTCACAGTCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR-3UTR CAA 90 bp CACTCCTCTCCACCACGAGACGGTCAATATGCACAGTCACAGGGCTCGGCTGCACGTGTGAGGCTGATCTaGATGGCAACCTGCCTTCAC +
Preference number: 3 (lower is better)
Translates to: HSSPPRDGQYAQSQGSAARVRLI*MATCLH
Trigger: GTGAAGGCAGGTTGCCATCAAGATCAGCCTCACACG...TGCAGCCGAGCCCTGTGACTGTGCATATTGACCGTCTCGTGGTGGAGAGGAGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR CCA 72 bp CAGCAGAAGCCGCGCGCAGACCGTACAGCACGTGAGTaGCCATCGTATAGATGGAGCTCCTCAGACATGCTT +
Preference number: 3 (lower is better)
Translates to: QQKPRADRTARE*PSYRWSSSDML
Trigger: AAGCATGTCTGAGGAGCTCCATCTATACGATGGCCACTCACGTGCTGTACGGTCTGCGCGCGGCTTCTGCTG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR-3UTR CAA 90 bp CACTCCTCTCCACCACGAGACGGTCAATATGCACAGTCACAGGGCTCGGCTGCAGGACAGTGCCTCGTGTaGGTGGCTATCATTTCAGAG +
Preference number: 3 (lower is better)
Translates to: HSSPPRDGQYAQSQGSAAGQCLV*VAIISE
Trigger: CTCTGAAATGATAGCCACCAACACGAGGCACTGTCC...TGCAGCCGAGCCCTGTGACTGTGCATATTGACCGTCTCGTGGTGGAGAGGAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR TCA 72 bp GCAGGAGAGCGCAGAGCACTTGTGGGATTCACTGGATaGAGCAGCAGGGCAAGCTCCGCACTGCGAAGTAAA +
Preference number: 3 (lower is better)
Translates to: AGERRALVGFTG*SSRASSALRSK
Trigger: TTTACTTCGCAGTGCGGAGCTTGCCCTGCTGCTTCATCCAGTGAATCCCACAAGTGCTCTGCGCTCTCCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR TCA 72 bp CATCCTCACGTCACACATCCCCCGGGTCCGCACTACTaGATCACTGCTGGCACCGTCTTTGAAATCAGTCCC +
Preference number: 3 (lower is better)
Translates to: HPHVTHPPGPHY*ITAGTVFEISP
Trigger: GGGACTGATTTCAAAGACGGTGCCAGCAGTGATTCAGTAGTGCGGACCCGGGGGATGTGTGACGTGAGGATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR GCA 72 bp TATGCACAGTCACAGGGCTCGGCTGCAGGGACACCGTaGTGCCCCGGGGACTGTCATCTTTCAAGTTTATCT +
Preference number: 3 (lower is better)
Translates to: YAQSQGSAAGTP*CPGDCHLSSLS
Trigger: AGATAAACTTGAAAGATGACAGTCCCCGGGGCAGCACGGTGTCCCTGCAGCCGAGCCCTGTGACTGTGCATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR CCA 72 bp TCCCACTTTCAGAAGCAGGAGAGCGCAGAGCACTTGTaGGATTCACTGGATGAAGCAGCAGGGCAAGCTCCG +
Preference number: 3 (lower is better)
Translates to: SHFQKQESAEHL*DSLDEAAGQAP
Trigger: CGGAGCTTGCCCTGCTGCTTCATCCAGTGAATCCCACAAGTGCTCTGCGCTCTCCTGCTTCTGAAAGTGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR GCA 72 bp AGCCTCTGGAGAGGCTTCCCCACAAGTCTGCGTATTTaGACTTGTGTTCACACTCTCTGCTGGGCTCTGGCA +
Preference number: 3 (lower is better)
Translates to: SLWRGFPTSLRI*TCVHTLCWALA
Trigger: TGCCAGAGCCCAGCAGAGAGTGTGAACACAAGTGCAAATACGCAGACTTGTGGGGAAGCCTCTCCAGAGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR GCA 72 bp GTGCTGACAGCCTCTGGAGAGGCTTCCCCACAAGTCTaGGTATTTGCACTTGTGTTCACACTCTCTGCTGGG +
Preference number: 3 (lower is better)
Translates to: VLTASGEASPQV*VFALVFTLSAG
Trigger: CCCAGCAGAGAGTGTGAACACAAGTGCAAATACGCAGACTTGTGGGGAAGCCTCTCCAGAGGCTGTCAGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR GCA 72 bp TATCTGTGCCAGCTTTCTACAAGCACAGGCGACGAGTaGCACCACATCCCCCTTCACCTGCCAACACTGTCT +
Preference number: 3 (lower is better)
Translates to: YLCQLSTSTGDE*HHIPLHLPTLS
Trigger: AGACAGTGTTGGCAGGTGAAGGGGGATGTGGTGGCACTCGTCGCCTGTGCTTGTAGAAAGCTGGCACAGATA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000219712.2
3UTR CCA 72 bp TTTGAGTTCCTTTTCATTGCCTTCCCCAGCAACACGTaGCTGTCGCTTCCATCGCTCTCCGCCTGCTCTTCC +
Preference number: 3 (lower is better)
Translates to: FEFLFIAFPSNT*LSLPSLSACSS
Trigger: GGAAGAGCAGGCGGAGAGCGATGGAAGCGACAGCCACGTGTTGCTGGGGAAGGCAATGAAAAGGAACTCAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR-3UTR CAA 90 bp TCCATCGCTCTCCGCCTGCTCTTCCAATACCATGCTGTCCAGGGAAAGGGTATCTGGAAGCCACATCCTTaGTGTGACTCCCTTCTGAGG +
Preference number: 3 (lower is better)
Translates to: SIALRLLFQYHAVQGKGIWKPHP*CDSLLR
Trigger: CCTCAGAAGGGAGTCACACAAAGGATGTGGCTTCCA...GATACCCTTTCCCTGGACAGCATGGTATTGGAAGAGCAGGCGGAGAGCGATGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR-3UTR CAA 90 bp CATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATCCATACCAGACGTTCTTGGCTGTATGTaGGCTCCCAAACAGTGCCTG +
Preference number: 3 (lower is better)
Translates to: HVPSVLLCETALAESIPDVLGCM*APKQCL
Trigger: CAGGCACTGTTTGGGAGCCAACATACAGCCAAGAAC...GTCTGGTATGGATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
3UTR-3UTR CAA 90 bp CACTCCTCTCCACCACGAGACGGTCAATATGCACAGTCACAGGGCTCGGCTGCAAAAAGAAGTGCCTTTTaGCAGGTTTGTGTCACTGGC +
Preference number: 3 (lower is better)
Translates to: HSSPPRDGQYAQSQGSAAKRSAF*QVCVTG
Trigger: GCCAGTGACACAAACCTGCAAAAAGGCACTTCTTTT...TGCAGCCGAGCCCTGTGACTGTGCATATTGACCGTCTCGTGGTGGAGAGGAGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR TCA 72 bp CCATCGTATAGATGGAGCTCCTCAGACATGCTTGCATaGAGCATAAGGGACAGGCGGCCTTTCTTCCCACAG +
Preference number: 3 (lower is better)
Translates to: PSYRWSSSDMLA*SIRDRRPFFPQ
Trigger: CTGTGGGAAGAAAGGCCGCCTGTCCCTTATGCTTCATGCAAGCATGTCTGAGGAGCTCCATCTATACGATGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR TCA 72 bp AACCAACTGGACGGTTACCAAGGTAATGCCGCAGACTaGCGTTGCCTAACTGACTTGGCGTCACCTGGTTCA +
Preference number: 3 (lower is better)
Translates to: NQLDGYQGNAAD*RCLTDLASPGS
Trigger: TGAACCAGGTGACGCCAAGTCAGTTAGGCAACGTCAGTCTGCGGCATTACCTTGGTAACCGTCCAGTTGGTT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR CCA 72 bp TTCTATGGAACTGGAACTGGATCTCTGCCTTGCAAGTaGTGGCTAAAGGTGTGTGCCATGATGTCTGCCCCC +
Preference number: 3 (lower is better)
Translates to: FYGTGTGSLPCK*WLKVCAMMSAP
Trigger: GGGGGCAGACATCATGGCACACACCTTTAGCCACCACTTGCAAGGCAGAGATCCAGTTCCAGTTCCATAGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219712.2
3UTR-3UTR CAA 90 bp TCCATCGCTCTCCGCCTGCTCTTCCAATACCATGCTGTCCAGGGAAAGGGTATCTACCAGTTACAGGGTTaGAAGGTGGGTTATGGTTGC +
Preference number: 3 (lower is better)
Translates to: SIALRLLFQYHAVQGKGIYQLQG*KVGYGC
Trigger: GCAACCATAACCCACCTTCAAACCCTGTAACTGGTA...GATACCCTTTCCCTGGACAGCATGGTATTGGAAGAGCAGGCGGAGAGCGATGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR TCA 72 bp CATGCTGTCCAGGGAAAGGGTATCCAGGGAGACCTGTaGGGCGCTCCTTTTCATGTTCTTGTAGGAAACAGA +
Preference number: 3 (lower is better)
Translates to: HAVQGKGIQGDL*GAPFHVLVGNR
Trigger: TCTGTTTCCTACAAGAACATGAAAAGGAGCGCCTCACAGGTCTCCCTGGATACCCTTTCCCTGGACAGCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR GCA 72 bp GATTCACTGGATGAAGCAGCAGGGCAAGCTCCGCACTaGGAAGTAAAATTCCAACGCAAACAGAAGTCTGGG +
Preference number: 3 (lower is better)
Translates to: DSLDEAAGQAPH*EVKFQRKQKSG
Trigger: CCCAGACTTCTGTTTGCGTTGGAATTTTACTTCGCAGTGCGGAGCTTGCCCTGCTGCTTCATCCAGTGAATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR GCA 72 bp GGGCCTTTCTATGGAACTGGAACTGGATCTCTGCCTTaGAAGTGGTGGCTAAAGGTGTGTGCCATGATGTCT +
Preference number: 3 (lower is better)
Translates to: GPFYGTGTGSLP*KWWLKVCAMMS
Trigger: AGACATCATGGCACACACCTTTAGCCACCACTTGCAAGGCAGAGATCCAGTTCCAGTTCCATAGAAAGGCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219712.2
3UTR CCA 72 bp CCAGATAGACAGAGGGAAAGCATCTACAAAGCTTACTaGCCGCCCCTTCCCGCTTTTCATCCCTTCATAGTC +
Preference number: 3 (lower is better)
Translates to: PDRQRESIYKAY*PPLPAFHPFIV
Trigger: GACTATGAAGGGATGAAAAGCGGGAAGGGGCGGCCAGTAAGCTTTGTAGATGCTTTCCCTCTGTCTATCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR CCA 72 bp GCACTGCGAAGTAAAATTCCAACGCAAACAGAAGTCTaGGAAGCGGGGCTTCCAATCACAGCTTCCACATCC +
Preference number: 3 (lower is better)
Translates to: ALRSKIPTQTEV*EAGLPITASTS
Trigger: GGATGTGGAAGCTGTGATTGGAAGCCCCGCTTCCCAGACTTCTGTTTGCGTTGGAATTTTACTTCGCAGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR TCA 72 bp GTGTATGGCGTCAATTCCCTTACCAGTTACAGGGTTTaGAGGTGGGTTATGGTTGCCGTCATCATCCAGGGA +
Preference number: 3 (lower is better)
Translates to: VYGVNSLTSYRV*RWVMVAVIIQG
Trigger: TCCCTGGATGATGACGGCAACCATAACCCACCTTCAAACCCTGTAACTGGTAAGGGAATTGACGCCATACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR GCA 72 bp AATCCGAGTAAATCTCAGGTCTCCGTGCTCCCACTGTaGATTGACACTGTAGATACGGAGCTGAGAAAGCTC +
Preference number: 3 (lower is better)
Translates to: NPSKSQVSVLPL*IDTVDTELRKL
Trigger: GAGCTTTCTCAGCTCCGTATCTACAGTGTCAATGCACAGTGGGAGCACGGAGACCTGAGATTTACTCGGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219712.2
3UTR TCA 72 bp TCTTTAAATGTCAAAACCTCTCCTCTCTGCGGATCCTaGATCCGAGTAAATCTCAGGTCTCCGTGCTCCCAC +
Preference number: 3 (lower is better)
Translates to: SLNVKTSPLCGS*IRVNLRSPCSH
Trigger: GTGGGAGCACGGAGACCTGAGATTTACTCGGATTCAGGATCCGCAGAGAGGAGAGGTTTTGACATTTAAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219712.2
3UTR GCA 72 bp CCAGTGCCCTGTATTTGTGCTTTGATTTTACACGAGTaGCTCACTGAAGCCTCCCCATCACTTAAGGTGACT +
Preference number: 3 (lower is better)
Translates to: PVPCICALILHE*LTEASPSLKVT
Trigger: AGTCACCTTAAGTGATGGGGAGGCTTCAGTGAGGCACTCGTGTAAAATCAAAGCACAAATACAGGGCACTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
3UTR CCA 72 bp GCTGATTTGAAAAGCAACGGATCCTTTAAAGGGGCGTaGCTGAGGTCAACACTCATTGACCTGTTGTCTGAC +
Preference number: 3 (lower is better)
Translates to: ADLKSNGSFKGA*LRSTLIDLLSD
Trigger: GTCAGACAACAGGTCAATGAGTGTTGACCTCAGCCACGCCCCTTTAAAGGATCCGTTGCTTTTCAAATCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR TCA 72 bp TTTAAGTCACTTGCCCAGTGCCCTGTATTTGTGCTTTaGTTTTACACGAGTGCCTCACTGAAGCCTCCCCAT +
Preference number: 3 (lower is better)
Translates to: FKSLAQCPVFVL*FYTSASLKPPH
Trigger: ATGGGGAGGCTTCAGTGAGGCACTCGTGTAAAATCAAAGCACAAATACAGGGCACTGGGCAAGTGACTTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
3UTR TCA 72 bp GCATCCTACCACAAGCTATACTCCCAGCCCGTGACATaGAACTCTAACACAGGAAACATCCAGCAAACATGT +
Preference number: 3 (lower is better)
Translates to: ASYHKLYSQPVT*NSNTGNIQQTC
Trigger: ACATGTTTGCTGGATGTTTCCTGTGTTAGAGTTTCATGTCACGGGCTGGGAGTATAGCTTGTGGTAGGATGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219712.2
3UTR GCA 72 bp CTCTCGGAACCTGTACAACGTTACCTAGAGGCTGTGTaGAAGCAAGCTAGGAAACATAATCCACTTTGCGTT +
Preference number: 3 (lower is better)
Translates to: LSEPVQRYLEAV*KQARKHNPLCV
Trigger: AACGCAAAGTGGATTATGTTTCCTAGCTTGCTTGCACACAGCCTCTAGGTAACGTTGTACAGGTTCCGAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR CCA 72 bp AGCCATCTCTGTAGTTTAAGACACTATCTGAGTCTGTaGAAGCCACATCCTTTGTGTGACTCCCTTCTGAGG +
Preference number: 3 (lower is better)
Translates to: SHLCSLRHYLSL*KPHPLCDSLLR
Trigger: CCTCAGAAGGGAGTCACACAAAGGATGTGGCTTCCACAGACTCAGATAGTGTCTTAAACTACAGAGATGGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR-3UTR CAA 90 bp GCAGCCCAAAAGACCATCTTACTTACTCTTCTTTTAAGGGTGACTCGGATTTTTTTATTGCAGAACACCTaGCTGATGGCCAGCCAGGTG +
Preference number: 3 (lower is better)
Translates to: AAQKTILLTLLLRVTRIFLLQNT*LMASQV
Trigger: CACCTGGCTGGCCATCAGCAAGGTGTTCTGCAATAA...AAAAATCCGAGTCACCCTTAAAAGAAGAGTAAGTAAGATGGTCTTTTGGGCTGC
46% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000219712.2
3UTR TCA 72 bp ACGAGTGCCTCACTGAAGCCTCCCCATCACTTAAGGTaGCTTTCCTTTCACATTTTCAAGTTGCTTCACAAG +
Preference number: 3 (lower is better)
Translates to: TSASLKPPHHLR*LSFHIFKLLHK
Trigger: CTTGTGAAGCAACTTGAAAATGTGAAAGGAAAGTCACCTTAAGTGATGGGGAGGCTTCAGTGAGGCACTCGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
3UTR TCA 72 bp TCACTGGACTCACTTTGTGAGGTATTAAGGGTCACTTaGTCACAAGTCTGGAACTCTTTCTGTAGCTCTGCG +
Preference number: 3 (lower is better)
Translates to: SLDSLCEVLRVT*SQVWNSFCSSA
Trigger: CGCAGAGCTACAGAAAGAGTTCCAGACTTGTGATCAAGTGACCCTTAATACCTCACAAAGTGAGTCCAGTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR TCA 72 bp GCACCGTCTTTGAAATCAGTCCCAGTGTTAAACAGGTaGGAATCTCTGATGTGGAAAGAGCCATCATCACTC +
Preference number: 3 (lower is better)
Translates to: APSLKSVPVLNR*ESLMWKEPSSL
Trigger: GAGTGATGATGGCTCTTTCCACATCAGAGATTCTCACCTGTTTAACACTGGGACTGATTTCAAAGACGGTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR CCA 72 bp GAGGAAAACCTTAAAAATGTGTCTGATGAAGGTCTTTaGCCGCCATTTGTCAGAGGCTCAGACTCTGTACTG +
Preference number: 3 (lower is better)
Translates to: EENLKNVSDEGL*PPFVRGSDSVL
Trigger: CAGTACAGAGTCTGAGCCTCTGACAAATGGCGGCCAAAGACCTTCATCAGACACATTTTTAAGGTTTTCCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR CCA 72 bp GTATTTGCACTTGTGTTCACACTCTCTGCTGGGCTCTaGCAGCTTGTATTTGAGTTCCTTTTCATTGCCTTC +
Preference number: 3 (lower is better)
Translates to: VFALVFTLSAGL*QLVFEFLFIAF
Trigger: GAAGGCAATGAAAAGGAACTCAAATACAAGCTGCCAGAGCCCAGCAGAGAGTGTGAACACAAGTGCAAATAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR-3UTR CAA 90 bp GGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCCTTCTGGTATTAAGGGTCACTaGATCACAAGTCTGGAACTC +
Preference number: 3 (lower is better)
Translates to: GKLPTNWLHPSVKPSRPSGIKGH*ITSLEL
Trigger: GAGTTCCAGACTTGTGATCAAGTGACCCTTAATACC...AGAAGGACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR CCA 72 bp TTTAGGATGAATTATAGCTTTCTGGTCAGAACCAACTaGACGGTTACCAAGGTAATGCCGCAGACTGACGTT +
Preference number: 3 (lower is better)
Translates to: FRMNYSFLVRTN*TVTKVMPQTDV
Trigger: AACGTCAGTCTGCGGCATTACCTTGGTAACCGTCCAGTTGGTTCTGACCAGAAAGCTATAATTCATCCTAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR TCA 72 bp AGAAAACTTGTATGTTTATGTAGAACAGGTCAGTCCTaGGAAACAGCGTCAGCTCAGAAGTTCATGTCCCAT +
Preference number: 3 (lower is better)
Translates to: RKLVCLCRTGQS*ETASAQKFMSH
Trigger: ATGGGACATGAACTTCTGAGCTGACGCTGTTTCTCAGGACTGACCTGTTCTACATAAACATACAAGTTTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
3UTR TCA 72 bp CTGAGGTCAACACTCATTGACCTGTTGTCTGACATGTaGTTGAGAGTAGCATTTCTAATTCGGTGTATACCA +
Preference number: 3 (lower is better)
Translates to: LRSTLIDLLSDM*LRVAFLIRCIP
Trigger: TGGTATACACCGAATTAGAAATGCTACTCTCAATCACATGTCAGACAACAGGTCAATGAGTGTTGACCTCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR GCA 72 bp AACTTTAGCATTAAGCCGTCAACTCGGATGTCAACATaGTCATCGGATTTTGAGCTGTCATTCAACTTGTAC +
Preference number: 3 (lower is better)
Translates to: NFSIKPSTRMST*SSDFELSFNLY
Trigger: GTACAAGTTGAATGACAGCTCAAAATCCGATGAGCATGTTGACATCCGAGTTGACGGCTTAATGCTAAAGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR TCA 72 bp TGCCTGTTTTTATCAAATGATGTCACCCGAAAAGAATaGTGTGAGGAGAAGGAAGGCAAATACTGTTCACAA +
Preference number: 3 (lower is better)
Translates to: CLFLSNDVTRKE*CEEKEGKYCSQ
Trigger: TTGTGAACAGTATTTGCCTTCCTTCTCCTCACATCATTCTTTTCGGGTGACATCATTTGATAAAAACAGGCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR GCA 90 bp AAGTTCATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATCCATACGTCACAGGGCTCGGCTaGAGGGACACCGTGCTGCCC +
Preference number: 4 (lower is better)
Translates to: KFMSHPSSSVRLLLLNPYVTGLG*RDTVLP
Trigger: GGGCAGCACGGTGTCCCTGCAGCCGAGCCCTGTGAC...GTATGGATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATGAACTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR TCA 90 bp GATGGCTGTAATTCCGGCCAACATGCAAAGCACCATGAGTGTCATAGCAAGGGCCTCCTGCGTGCCCTCTaGGTTGGTGCTGACAGCCTC +
Preference number: 4 (lower is better)
Translates to: DGCNSGQHAKHHECHSKGLLRAL*VGADSL
Trigger: GAGGCTGTCAGCACCAACTCAGAGGGCACGCAGGAG...GCCCTTGCTATGACACTCATGGTGCTTTGCATGTTGGCCGGAATTACAGCCATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR GCA 90 bp GCTCAGAAGTTCATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATCGTCTGGGATTTAGGTaGTCTGGCTGGGGGCGCCTC +
Preference number: 4 (lower is better)
Translates to: AQKFMSHPSSSVRLLLLNRLGFR*SGWGRL
Trigger: GAGGCGCCCCCAGCCAGAGCACCTAAATCCCAGACG...ATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATGAACTTCTGAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
3UTR CAA 72 bp GGCTCCCACTTTCAGAAGCAGGAGAGCGCAGAGCACTaGTGGGATTCACTGGATGAAGCAGCAGGGCAAGCT +
Preference number: 4 (lower is better)
Translates to: GSHFQKQESAEH*WDSLDEAAGQA
Trigger: AGCTTGCCCTGCTGCTTCATCCAGTGAATCCCACAAGTGCTCTGCGCTCTCCTGCTTCTGAAAGTGGGAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
3UTR CAA 72 bp CAGCCTCTGGAGAGGCTTCCCCACAAGTCTGCGTATTaGCACTTGTGTTCACACTCTCTGCTGGGCTCTGGC +
Preference number: 4 (lower is better)
Translates to: QPLERLPHKSAY*HLCSHSLLGSG
Trigger: GCCAGAGCCCAGCAGAGAGTGTGAACACAAGTGCAAATACGCAGACTTGTGGGGAAGCCTCTCCAGAGGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
CDS-3UTR GCA 90 bp GCTCAGAAGTTCATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATTCGTCGCGGTTCTCCTaGGTGCCCTCTGAGTTGGTG +
Preference number: 4 (lower is better)
Translates to: AQKFMSHPSSSVRLLLLNSSRFS*VPSELV
Trigger: CACCAACTCAGAGGGCACGCAGGAGAACCGCGACGA...ATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATGAACTTCTGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
3UTR CAA 72 bp CTGGAGAGGCTTCCCCACAAGTCTGCGTATTTGCACTaGTGTTCACACTCTCTGCTGGGCTCTGGCAGCTTG +
Preference number: 4 (lower is better)
Translates to: LERLPHKSAYLH*CSHSLLGSGSL
Trigger: CAAGCTGCCAGAGCCCAGCAGAGAGTGTGAACACAAGTGCAAATACGCAGACTTGTGGGGAAGCCTCTCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
CDS-3UTR TCA 90 bp GAAGTTCATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATCCATAGTGGGATTCACTGGATaGAGCAGCAGGGCAAGCTCC +
Preference number: 4 (lower is better)
Translates to: EVHVPSVLLCETALAESIVGFTG*SSRASS
Trigger: GGAGCTTGCCCTGCTGCTTCATCCAGTGAATCCCAC...TATGGATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATGAACTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR TCA 90 bp TGTCCTGAGGCAGTTGCAATCGGTGACGGACCGTTAGGGGCTCGTGGCTCTTCATGGTACTCACTTAGCTaGTTGTGCAATTCACAGCAC +
Preference number: 4 (lower is better)
Translates to: CPEAVAIGDGPLGARGSSWYSLS*LCNSQH
Trigger: GTGCTGTGAATTGCACAATCAGCTAAGTGAGTACCA...TGAAGAGCCACGAGCCCCTAACGGTCCGTCACCGATTGCAACTGCCTCAGGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219712.2
CDS-3UTR GCA 90 bp AAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCCTGTCACAGGGCTCGGCTaGAGGGACACCGTGCTGCCC +
Preference number: 4 (lower is better)
Translates to: KGKLPTNWLHPSVKPSRPVTGLG*RDTVLP
Trigger: GGGCAGCACGGTGTCCCTGCAGCCGAGCCCTGTGAC...AGGACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
CDS-3UTR GCA 90 bp CATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATCCATACCAGACTGGGTGACACTGCTGTaGATCCTCACGTCACACATC +
Preference number: 4 (lower is better)
Translates to: HVPSVLLCETALAESIPDWVTLL*ILTSHI
Trigger: GATGTGTGACGTGAGGATGCACAGCAGTGTCACCCA...GTCTGGTATGGATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CCA 90 bp CTGGCTGGGGGCGCCTCCTCTTTACTGCTCTCCGGGTTCTCAGAGAGGGAAGCTGCTGGCTATATAGGTTaGGAGATGGAACTGATATAT +
Preference number: 4 (lower is better)
Translates to: LAGGASSLLLSGFSEREAAGYIG*EMELIY
Trigger: ATATATCAGTTCCATCTCCCAACCTATATAGCCAGC...AGCTTCCCTCTCTGAGAACCCGGAGAGCAGTAAAGAGGAGGCGCCCCCAGCCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
CDS-3UTR TCA 90 bp GATGGCTGTAATTCCGGCCAACATGCAAAGCACCATGAGTGTCATAGCAAGGGCCCTCTCTGCGGATCCTaGATCCGAGTAAATCTCAGG +
Preference number: 4 (lower is better)
Translates to: DGCNSGQHAKHHECHSKGPLCGS*IRVNLR
Trigger: CCTGAGATTTACTCGGATTCAGGATCCGCAGAGAGG...GCCCTTGCTATGACACTCATGGTGCTTTGCATGTTGGCCGGAATTACAGCCATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR TCA 90 bp CACTCCTCTCCACCACGAGACGGTCAATATGCACAGTCACAGGGCTCGGCTGCAAGTCCCTTTCAGAGTTaGGTCTTTCTCTGTTTGTGT +
Preference number: 4 (lower is better)
Translates to: HSSPPRDGQYAQSQGSAASPFQS*VFLCLC
Trigger: ACACAAACAGAGAAAGACTCAACTCTGAAAGGGACT...TGCAGCCGAGCCCTGTGACTGTGCATATTGACCGTCTCGTGGTGGAGAGGAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
CDS-3UTR GCA 90 bp TGTGCTTTGATTTTACACGAGTGCCTCACTGAAGCCTCCCCATCACTTAAGGTGTCTGCAAGCAGAGAGTaGACGACAGCACCTGGCCCA +
Preference number: 4 (lower is better)
Translates to: CALILHECLTEASPSLKVSASRE*TTAPGP
Trigger: TGGGCCAGGTGCTGTCGTGCACTCTCTGCTTGCAGA...CACCTTAAGTGATGGGGAGGCTTCAGTGAGGCACTCGTGTAAAATCAAAGCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR GCA 90 bp GATGGCTGTAATTCCGGCCAACATGCAAAGCACCATGAGTGTCATAGCAAGGGCCGGTCCTTCATGGCCTaGTTAAGCATTTCCACGTTG +
Preference number: 4 (lower is better)
Translates to: DGCNSGQHAKHHECHSKGRSFMA*LSISTL
Trigger: CAACGTGGAAATGCTTAAGCAGGCCATGAAGGACCG...GCCCTTGCTATGACACTCATGGTGCTTTGCATGTTGGCCGGAATTACAGCCATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR GCA 90 bp CACGTGAGTGGCCATCGTATAGATGGAGCTCCTCAGACATGCTTGCATGAAGCACGGTCCTTCATGGCCTaGTTAAGCATTTCCACGTTG +
Preference number: 4 (lower is better)
Translates to: HVSGHRIDGAPQTCLHEARSFMA*LSISTL
Trigger: CAACGTGGAAATGCTTAAGCAGGCCATGAAGGACCG...TGCTTCATGCAAGCATGTCTGAGGAGCTCCATCTATACGATGGCCACTCACGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
CDS-3UTR GCA 90 bp GAAGTTCATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATCCATATGTGTTCACACTCTCTaGTGGGCTCTGGCAGCTTGT +
Preference number: 4 (lower is better)
Translates to: EVHVPSVLLCETALAESICVHTL*WALAAC
Trigger: ACAAGCTGCCAGAGCCCAGCAGAGAGTGTGAACACA...TATGGATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATGAACTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CCA 90 bp TGTGCTTTGATTTTACACGAGTGCCTCACTGAAGCCTCCCCATCACTTAAGGTGTCTGTTTGTGTGTGCTaGGGAGAGGCATGTGTCGGG +
Preference number: 4 (lower is better)
Translates to: CALILHECLTEASPSLKVSVCVC*GEACVG
Trigger: CCCGACACATGCCTCTCCCCAGCACACACAAACAGA...CACCTTAAGTGATGGGGAGGCTTCAGTGAGGCACTCGTGTAAAATCAAAGCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CCA 90 bp TCATCCCTTCATAGTCTATCCAAAACTGGGAAAAGTACACCGCCCACACATCGGTCTGTTTGTGTGTGCTaGGGAGAGGCATGTGTCGGG +
Preference number: 4 (lower is better)
Translates to: SSLHSLSKTGKSTPPTHRSVCVC*GEACVG
Trigger: CCCGACACATGCCTCTCCCCAGCACACACAAACAGA...CCGATGTGTGGGCGGTGTACTTTTCCCAGTTTTGGATAGACTATGAAGGGATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
CDS-3UTR CCA 90 bp GATGGCTGTAATTCCGGCCAACATGCAAAGCACCATGAGTGTCATAGCAAGGGCACTTGTGGGATTCACTaGATGAAGCAGCAGGGCAAG +
Preference number: 4 (lower is better)
Translates to: DGCNSGQHAKHHECHSKGTCGIH*MKQQGK
Trigger: CTTGCCCTGCTGCTTCATCCAGTGAATCCCACAAGT...GCCCTTGCTATGACACTCATGGTGCTTTGCATGTTGGCCGGAATTACAGCCATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CCA 90 bp TGGAACAGCCGCCACTTCACCACTCGCTTTATTTCATGTAAAGGAAAACTTCCCAGGCAAAGGAACCTCTaGGCTCGTCTGGGTGGCTTG +
Preference number: 4 (lower is better)
Translates to: WNSRHFTTRFISCKGKLPRQRNL*ARLGGL
Trigger: CAAGCCACCCAGACGAGCCCAGAGGTTCCTTTGCCT...GGGAAGTTTTCCTTTACATGAAATAAAGCGAGTGGTGAAGTGGCGGCTGTTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CCA 90 bp AACCTCTCCTCTCTGCGGATCCTGAATCCGAGTAAATCTCAGGTCTCCGTGCTCAAAGGTCCCTATTCCTaGAGAAAGCAAGCAGTCAGC +
Preference number: 4 (lower is better)
Translates to: NLSSLRILNPSKSQVSVLKGPYS*RKQAVS
Trigger: GCTGACTGCTTGCTTTCTCCAGGAATAGGGACCTTT...GAGCACGGAGACCTGAGATTTACTCGGATTCAGGATCCGCAGAGAGGAGAGGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219712.2
3UTR CAA 72 bp TTCAGTTTTGTCCATGGAATCCTGATGGAGGCTTTATaGCAGAACACCTTGCTGATGGCCAGCCAGGTGGGC +
Preference number: 4 (lower is better)
Translates to: FSFVHGILMEAL*QNTLLMASQVG
Trigger: GCCCACCTGGCTGGCCATCAGCAAGGTGTTCTGCAATAAAGCCTCCATCAGGATTCCATGGACAAAACTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219712.2
CDS-3UTR TCA 90 bp GTTTGGAACAGCCGCCACTTCACCACTCGCTTTATTTCATGTAAAGGAAAACTTTGCAGAACACCTTGCTaGTGGCCAGCCAGGTGGGCA +
Preference number: 4 (lower is better)
Translates to: VWNSRHFTTRFISCKGKLCRTPC*WPARWA
Trigger: TGCCCACCTGGCTGGCCATCAGCAAGGTGTTCTGCA...AAGTTTTCCTTTACATGAAATAAAGCGAGTGGTGAAGTGGCGGCTGTTCCAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR TCA 90 bp CATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATCCATACCAGACGTTTGTGTCACTGGCTaGTTTGAAAAGCAACGGATC +
Preference number: 4 (lower is better)
Translates to: HVPSVLLCETALAESIPDVCVTG*FEKQRI
Trigger: GATCCGTTGCTTTTCAAATCAGCCAGTGACACAAAC...GTCTGGTATGGATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR TCA 90 bp GCTCAGAAGTTCATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATCCTGAGCCACTCTTGTaGGAAAGTCCACTACTTTCA +
Preference number: 4 (lower is better)
Translates to: AQKFMSHPSSSVRLLLLNPEPLL*ESPLLS
Trigger: TGAAAGTAGTGGACTTTCTCACAAGAGTGGCTCAGG...ATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATGAACTTCTGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR TCA 90 bp GAAGTTCATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATCCATAACCAGTTACAGGGTTTaGAGGTGGGTTATGGTTGCC +
Preference number: 4 (lower is better)
Translates to: EVHVPSVLLCETALAESITSYRV*RWVMVA
Trigger: GGCAACCATAACCCACCTTCAAACCCTGTAACTGGT...TATGGATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATGAACTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR TCA 90 bp CATGTAAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCCTCCTGCGTGCCCTCTaGGTTGGTGCTGACAGCCTC +
Preference number: 4 (lower is better)
Translates to: HVKENFPLTGYILLLNLALLRAL*VGADSL
Trigger: GAGGCTGTCAGCACCAACTCAGAGGGCACGCAGGAG...GGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTTACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
CDS-3UTR GCA 90 bp GAAGTTCATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATCCATACTCAGAGAGGGAAGCTaGTTCAGGAAGGAAGTCTTC +
Preference number: 4 (lower is better)
Translates to: EVHVPSVLLCETALAESILREGS*FRKEVF
Trigger: GAAGACTTCCTTCCTGAAGCAGCTTCCCTCTCTGAG...TATGGATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATGAACTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR GCA 90 bp AACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCCTTCTCCAGGCGCCTCCTCTTTACTaGTCTCCGGGTTCTCAGAGA +
Preference number: 4 (lower is better)
Translates to: NFPLTGYILLLNLAVLLQAPPLY*SPGSQR
Trigger: TCTCTGAGAACCCGGAGAGCAGTAAAGAGGAGGCGC...CTGGAGAAGGACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CCA 90 bp GATGGCTGTAATTCCGGCCAACATGCAAAGCACCATGAGTGTCATAGCAAGGGCAGTGCCTCGTGTTGGTaGCTATCATTTCAGAGCTCT +
Preference number: 4 (lower is better)
Translates to: DGCNSGQHAKHHECHSKGSASCW*LSFQSS
Trigger: AGAGCTCTGAAATGATAGCCACCAACACGAGGCACT...GCCCTTGCTATGACACTCATGGTGCTTTGCATGTTGGCCGGAATTACAGCCATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CCA 90 bp GCTCAGAAGTTCATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATTCCTTTAAAGGGGCGTaGCTGAGGTCAACACTCATT +
Preference number: 4 (lower is better)
Translates to: AQKFMSHPSSSVRLLLLNSFKGA*LRSTLI
Trigger: AATGAGTGTTGACCTCAGCCACGCCCCTTTAAAGGA...ATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATGAACTTCTGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CCA 90 bp GGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCCTTCTAGGCAAAGGAACCTCTaGGCTCGTCTGGGTGGCTTG +
Preference number: 4 (lower is better)
Translates to: GKLPTNWLHPSVKPSRPSRQRNL*ARLGGL
Trigger: CAAGCCACCCAGACGAGCCCAGAGGTTCCTTTGCCT...AGAAGGACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
3UTR CAA 72 bp TGTTCACACTCTCTGCTGGGCTCTGGCAGCTTGTATTaGAGTTCCTTTTCATTGCCTTCCCCAGCAACACGT +
Preference number: 4 (lower is better)
Translates to: CSHSLLGSGSLY*SSFSLPSPATR
Trigger: ACGTGTTGCTGGGGAAGGCAATGAAAAGGAACTCAAATACAAGCTGCCAGAGCCCAGCAGAGAGTGTGAACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
CDS-3UTR TCA 90 bp GATGGCTGTAATTCCGGCCAACATGCAAAGCACCATGAGTGTCATAGCAAGGGCTTGTCCATGGAATCCTaGTGGAGGCTTTATTGCAGA +
Preference number: 4 (lower is better)
Translates to: DGCNSGQHAKHHECHSKGLSMES*WRLYCR
Trigger: TCTGCAATAAAGCCTCCATCAGGATTCCATGGACAA...GCCCTTGCTATGACACTCATGGTGCTTTGCATGTTGGCCGGAATTACAGCCATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR TCA 90 bp AACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCCTTCTCCAGGCTCCCACTGTGCATTaGCACTGTAGATACGGAGCT +
Preference number: 4 (lower is better)
Translates to: NFPLTGYILLLNLAVLLQAPTVH*HCRYGA
Trigger: AGCTCCGTATCTACAGTGTCAATGCACAGTGGGAGC...CTGGAGAAGGACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR TCA 90 bp TGGAACAGCCGCCACTTCACCACTCGCTTTATTTCATGTAAAGGAAAACTTCCCGGTAATGCCGCAGACTaGCGTTGCCTAACTGACTTG +
Preference number: 4 (lower is better)
Translates to: WNSRHFTTRFISCKGKLPGNAAD*RCLTDL
Trigger: CAAGTCAGTTAGGCAACGTCAGTCTGCGGCATTACC...GGGAAGTTTTCCTTTACATGAAATAAAGCGAGTGGTGAAGTGGCGGCTGTTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR GCA 90 bp CATGTAAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCTCGTCGCGGTTCTCCTaGGTGCCCTCTGAGTTGGTG +
Preference number: 4 (lower is better)
Translates to: HVKENFPLTGYILLLNLASSRFS*VPSELV
Trigger: CACCAACTCAGAGGGCACGCAGGAGAACCGCGACGA...GGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTTACATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
CDS-3UTR GCA 90 bp CATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATCCATACCAGACCATTGGCATTACTGTTaGAACAGTTTCATCCTCCAG +
Preference number: 4 (lower is better)
Translates to: HVPSVLLCETALAESIPDHWHYC*NSFILQ
Trigger: CTGGAGGATGAAACTGTTGCAACAGTAATGCCAATG...GTCTGGTATGGATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CCA 90 bp GCTCAGAAGTTCATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATTTGGTATCTTGTTCGTaGGCATGTCTCTGGAAGATG +
Preference number: 4 (lower is better)
Translates to: AQKFMSHPSSSVRLLLLNLVSCS*ACLWKM
Trigger: CATCTTCCAGAGACATGCCCACGAACAAGATACCAA...ATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATGAACTTCTGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CCA 90 bp GTAAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCGTAGGAAACAGAGAGTaGAGCTGGGGAGGGTGGGCA +
Preference number: 4 (lower is better)
Translates to: VKENFPLTGYILLLNLAVVGNRE*SWGGWA
Trigger: TGCCCACCCTCCCCAGCTCCACTCTCTGTTTCCTAC...GACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CCA 90 bp TGTGCTTTGATTTTACACGAGTGCCTCACTGAAGCCTCCCCATCACTTAAGGTGCTCTCTGCTGGGCTCTaGCAGCTTGTATTTGAGTTC +
Preference number: 4 (lower is better)
Translates to: CALILHECLTEASPSLKVLSAGL*QLVFEF
Trigger: GAACTCAAATACAAGCTGCCAGAGCCCAGCAGAGAG...CACCTTAAGTGATGGGGAGGCTTCAGTGAGGCACTCGTGTAAAATCAAAGCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CCA 90 bp GGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCCTTCTGTGCACGACAGCACCTaGCCCACTTTCAAACCTCAG +
Preference number: 4 (lower is better)
Translates to: GKLPTNWLHPSVKPSRPSVHDST*PTFKPQ
Trigger: CTGAGGTTTGAAAGTGGGCCAGGTGCTGTCGTGCAC...AGAAGGACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
3UTR CAA 72 bp TTCATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTaGCTGAATCCATACCAGACATCAAAGGTTAGCAAG +
Preference number: 4 (lower is better)
Translates to: FMSHPSSSVRLL*LNPYQTSKVSK
Trigger: CTTGCTAACCTTTGATGTCTGGTATGGATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
3UTR CAA 72 bp GGGGGCCCGCAGAGCCTGGCTATTGCATTCTATAGCTaGAGCGTCTCTAGTTCAAAATTAGAAATGGACTAC +
Preference number: 4 (lower is better)
Translates to: GGPQSLAIAFYS*SVSSSKLEMDY
Trigger: GTAGTCCATTTCTAATTTTGAACTAGAGACGCTCAAGCTATAGAATGCAATAGCCAGGCTCTGCGGGCCCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
CDS-3UTR TCA 90 bp GCTCAGAAGTTCATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATTGTCACTGGCTGATTTaGAAAGCAACGGATCCTTTA +
Preference number: 4 (lower is better)
Translates to: AQKFMSHPSSSVRLLLLNCHWLI*KATDPL
Trigger: TAAAGGATCCGTTGCTTTTCAAATCAGCCAGTGACA...ATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATGAACTTCTGAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR TCA 90 bp TGGAACAGCCGCCACTTCACCACTCGCTTTATTTCATGTAAAGGAAAACTTCCCGGAAGTCTTCAGCTCTaGAGATGGAGTGTATGGCGT +
Preference number: 4 (lower is better)
Translates to: WNSRHFTTRFISCKGKLPGSLQL*RWSVWR
Trigger: ACGCCATACACTCCATCTTCAGAGCTGAAGACTTCC...GGGAAGTTTTCCTTTACATGAAATAAAGCGAGTGGTGAAGTGGCGGCTGTTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR TCA 90 bp GGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCCTTCTGGTAATGCCGCAGACTaGCGTTGCCTAACTGACTTG +
Preference number: 4 (lower is better)
Translates to: GKLPTNWLHPSVKPSRPSGNAAD*RCLTDL
Trigger: CAAGTCAGTTAGGCAACGTCAGTCTGCGGCATTACC...AGAAGGACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
CDS-3UTR TCA 90 bp CATGTAAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCTCTGGGTGGCTTGGGTaGCACTGCTGTGCATCCTCA +
Preference number: 4 (lower is better)
Translates to: HVKENFPLTGYILLLNLASGWLG*HCCASS
Trigger: TGAGGATGCACAGCAGTGTCACCCAAGCCACCCAGA...GGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTTACATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
CDS-3UTR TCA 90 bp TGTGCTTTGATTTTACACGAGTGCCTCACTGAAGCCTCCCCATCACTTAAGGTGAGCTCCATTTTAGCTTaGGCTAGTCTCTGCCTGAGA +
Preference number: 4 (lower is better)
Translates to: CALILHECLTEASPSLKVSSILA*ASLCLR
Trigger: TCTCAGGCAGAGACTAGCTCAAGCTAAAATGGAGCT...CACCTTAAGTGATGGGGAGGCTTCAGTGAGGCACTCGTGTAAAATCAAAGCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR GCA 90 bp AACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCCTTCTCCAGGTCACCTGGTTCACCTaGAGACAGACTTCTGTGTCT +
Preference number: 4 (lower is better)
Translates to: NFPLTGYILLLNLAVLLQVTWFT*RQTSVS
Trigger: AGACACAGAAGTCTGTCTGCAGGTGAACCAGGTGAC...CTGGAGAAGGACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
CDS-3UTR CCA 90 bp AAGTTCATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATCCATACGCGTATCTTGTTGGCTaGCAAATCCAGATAGACAGA +
Preference number: 4 (lower is better)
Translates to: KFMSHPSSSVRLLLLNPYAYLVG*QIQIDR
Trigger: TCTGTCTATCTGGATTTGCCAGCCAACAAGATACGC...GTATGGATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATGAACTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CCA 90 bp AAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCCTTTTAGGTGCTCTGGCTaGGGGCGCCTCCTCTTTACT +
Preference number: 4 (lower is better)
Translates to: KGKLPTNWLHPSVKPSRPFRCSG*GRLLFT
Trigger: AGTAAAGAGGAGGCGCCCCCAGCCAGAGCACCTAAA...AGGACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CCA 90 bp AAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCCTGTGCACGACAGCACCTaGCCCACTTTCAAACCTCAG +
Preference number: 4 (lower is better)
Translates to: KGKLPTNWLHPSVKPSRPVHDST*PTFKPQ
Trigger: CTGAGGTTTGAAAGTGGGCCAGGTGCTGTCGTGCAC...AGGACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
CDS-3UTR TCA 90 bp GAAGTTCATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATCCATAAGTCCCTTTCAGAGTTaGGTCTTTCTCTGTTTGTGT +
Preference number: 4 (lower is better)
Translates to: EVHVPSVLLCETALAESISPFQS*VFLCLC
Trigger: ACACAAACAGAGAAAGACTCAACTCTGAAAGGGACT...TATGGATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATGAACTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR TCA 90 bp TGGAACAGCCGCCACTTCACCACTCGCTTTATTTCATGTAAAGGAAAACTTCCCCCCATCCTCTTCATTTaGTGGAGAAGCTCATCTCTG +
Preference number: 4 (lower is better)
Translates to: WNSRHFTTRFISCKGKLPPILFI*WRSSSL
Trigger: CAGAGATGAGCTTCTCCATCAAATGAAGAGGATGGG...GGGAAGTTTTCCTTTACATGAAATAAAGCGAGTGGTGAAGTGGCGGCTGTTCCA
47% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR GCA 90 bp GAAGTTCATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATCCATAAAAGAAGTGCCTTTTTaGAGGTTTGTGTCACTGGCT +
Preference number: 4 (lower is better)
Translates to: EVHVPSVLLCETALAESIKEVPF*RFVSLA
Trigger: AGCCAGTGACACAAACCTGCAAAAAGGCACTTCTTT...TATGGATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATGAACTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR GCA 90 bp GTAAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCTGGGTGACACTGCTGTaGATCCTCACGTCACACATC +
Preference number: 4 (lower is better)
Translates to: VKENFPLTGYILLLNLAVWVTLL*ILTSHI
Trigger: GATGTGTGACGTGAGGATGCACAGCAGTGTCACCCA...GACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
CDS-3UTR CCA 90 bp GCTCAGAAGTTCATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATTCAAGATGTGAACTTTaGGTAGCATCTGCCTCAATT +
Preference number: 4 (lower is better)
Translates to: AQKFMSHPSSSVRLLLLNSRCEL*VASASI
Trigger: AATTGAGGCAGATGCTACCCAAAGTTCACATCTTGA...ATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATGAACTTCTGAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CCA 90 bp AAGTTCATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATCCATACTGTAGAGCATTCAGCTaGCTATATAGGTTGGGAGAT +
Preference number: 4 (lower is better)
Translates to: KFMSHPSSSVRLLLLNPYCRAFS*LYRLGD
Trigger: ATCTCCCAACCTATATAGCCAGCTGAATGCTCTACA...GTATGGATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATGAACTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CCA 90 bp GGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCCTTCTCTCTCTGCTGGGCTCTaGCAGCTTGTATTTGAGTTC +
Preference number: 4 (lower is better)
Translates to: GKLPTNWLHPSVKPSRPSLSAGL*QLVFEF
Trigger: GAACTCAAATACAAGCTGCCAGAGCCCAGCAGAGAG...AGAAGGACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
CDS-3UTR TCA 90 bp GGGCAAGCTCCGCACTGCGAAGTAAAATTCCAACGCAAACAGAAGTCTGGGAAGACTAACGCGTCTATTTaGCTCTTTTTCTTTTGCATG +
Preference number: 4 (lower is better)
Translates to: GQAPHCEVKFQRKQKSGKTNASI*LFFFCM
Trigger: CATGCAAAAGAAAAAGAGTCAAATAGACGCGTTAGT...CTTCCCAGACTTCTGTTTGCGTTGGAATTTTACTTCGCAGTGCGGAGCTTGCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
CDS-3UTR TCA 90 bp GTAAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCGAGCTAGTCTCTGCCTaGGACATTCGTTTTCCTCCA +
Preference number: 4 (lower is better)
Translates to: VKENFPLTGYILLLNLAVELVSA*DIRFPP
Trigger: TGGAGGAAAACGAATGTCTCAGGCAGAGACTAGCTC...GACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
CDS-3UTR GCA 90 bp CATGTAAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCTGTGTTCACACTCTCTaGTGGGCTCTGGCAGCTTGT +
Preference number: 4 (lower is better)
Translates to: HVKENFPLTGYILLLNLACVHTL*WALAAC
Trigger: ACAAGCTGCCAGAGCCCAGCAGAGAGTGTGAACACA...GGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTTACATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
CDS-3UTR CCA 90 bp GAAGTTCATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATCCATATTTCAGTTTTGTCCATaGAATCCTGATGGAGGCTTT +
Preference number: 4 (lower is better)
Translates to: EVHVPSVLLCETALAESIFQFCP*NPDGGF
Trigger: AAAGCCTCCATCAGGATTCCATGGACAAAACTGAAA...TATGGATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATGAACTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CCA 90 bp GTTTGGAACAGCCGCCACTTCACCACTCGCTTTATTTCATGTAAAGGAAAACTTACCGTTAGGGGCTCGTaGCTCTTCACATGTACTCAT +
Preference number: 4 (lower is better)
Translates to: VWNSRHFTTRFISCKGKLTVRGS*LFTCTH
Trigger: ATGAGTACATGTGAAGAGCCACGAGCCCCTAACGGT...AAGTTTTCCTTTACATGAAATAAAGCGAGTGGTGAAGTGGCGGCTGTTCCAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CCA 90 bp CATGTAAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCTGGAGCTGGGGAGGGTaGGCAACGTTCCTTAGATTT +
Preference number: 4 (lower is better)
Translates to: HVKENFPLTGYILLLNLAWSWGG*ATFLRF
Trigger: AAATCTAAGGAACGTTGCCCACCCTCCCCAGCTCCA...GGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTTACATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR TCA 90 bp TTTCATGTAAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTATCTGGGTGGCTTGGGTaGCACTGCTGTGCATCCTCA +
Preference number: 4 (lower is better)
Translates to: FHVKENFPLTGYILLLNLSGWLG*HCCASS
Trigger: TGAGGATGCACAGCAGTGTCACCCAAGCCACCCAGA...TAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTTACATGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
CDS-3UTR TCA 90 bp CATGTAAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGAGCTAGTCTCTGCCTaGGACATTCGTTTTCCTCCA +
Preference number: 4 (lower is better)
Translates to: HVKENFPLTGYILLLNLAELVSA*DIRFPP
Trigger: TGGAGGAAAACGAATGTCTCAGGCAGAGACTAGCTC...GGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTTACATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
CDS-3UTR TCA 90 bp AAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCCTAGCTCCATTTTAGCTTaGGCTAGTCTCTGCCTGAGA +
Preference number: 4 (lower is better)
Translates to: KGKLPTNWLHPSVKPSRPSSILA*ASLCLR
Trigger: TCTCAGGCAGAGACTAGCTCAAGCTAAAATGGAGCT...AGGACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
CDS-3UTR GCA 90 bp GTTTGGAACAGCCGCCACTTCACCACTCGCTTTATTTCATGTAAAGGAAAACTTGAACAGTTTCACAATTaGATCACTCAGGTCGGGAGC +
Preference number: 4 (lower is better)
Translates to: VWNSRHFTTRFISCKGKLEQFHN*ITQVGS
Trigger: GCTCCCGACCTGAGTGATGCAATTGTGAAACTGTTC...AAGTTTTCCTTTACATGAAATAAAGCGAGTGGTGAAGTGGCGGCTGTTCCAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR GCA 90 bp GAAGTTCATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATCCATAAGTCTAGAAAAGAAGTaGCTTTTTGCAGGTTTGTGT +
Preference number: 4 (lower is better)
Translates to: EVHVPSVLLCETALAESISLEKK*LFAGLC
Trigger: ACACAAACCTGCAAAAAGGCACTTCTTTTCTAGACT...TATGGATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATGAACTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR GCA 90 bp TTTCATGTAAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTATCTGCAAGCAGAGAGTaGACGACAGCACCTGGCCCA +
Preference number: 4 (lower is better)
Translates to: FHVKENFPLTGYILLLNLSASRE*TTAPGP
Trigger: TGGGCCAGGTGCTGTCGTGCACTCTCTGCTTGCAGA...TAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTTACATGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
CDS-3UTR CCA 90 bp CATGTAAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGGCCAGCCAGATCACTaGACTCACTTTGTGAGGTAT +
Preference number: 4 (lower is better)
Translates to: HVKENFPLTGYILLLNLAGQPDH*THFVRY
Trigger: ATACCTCACAAAGTGAGTCCAGTGATCTGGCTGGCC...GGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTTACATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CCA 90 bp CATGTAAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTTCACACTCTCTGCTaGGCTCTGGCAGCTTGTATT +
Preference number: 4 (lower is better)
Translates to: HVKENFPLTGYILLLNLAVHTLC*ALAACI
Trigger: AATACAAGCTGCCAGAGCCCAGCAGAGAGTGTGAAC...GGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTTACATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
CDS-3UTR TCA 90 bp TGTGCTTTGATTTTACACGAGTGCCTCACTGAAGCCTCCCCATCACTTAAGGTGACTAACGCGTCTATTTaGCTCTTTTTCTTTTGCATG +
Preference number: 4 (lower is better)
Translates to: CALILHECLTEASPSLKVTNASI*LFFFCM
Trigger: CATGCAAAAGAAAAAGAGTCAAATAGACGCGTTAGT...CACCTTAAGTGATGGGGAGGCTTCAGTGAGGCACTCGTGTAAAATCAAAGCACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR TCA 90 bp TGGAACAGCCGCCACTTCACCACTCGCTTTATTTCATGTAAAGGAAAACTTCCCTTAGCTTTTGACGGTTaGGGTAATACTGAAGGTGTT +
Preference number: 4 (lower is better)
Translates to: WNSRHFTTRFISCKGKLPLAFDG*GNTEGV
Trigger: AACACCTTCAGTATTACCTCAACCGTCAAAAGCTAA...GGGAAGTTTTCCTTTACATGAAATAAAGCGAGTGGTGAAGTGGCGGCTGTTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218776.2
CDS-3UTR TCA 90 bp TGTGCTTTGATTTTACACGAGTGCCTCACTGAAGCCTCCCCATCACTTAAGGTGCACTCTTTAAAGTCTTaGCACAAAGCTTCTAGATCA +
Preference number: 4 (lower is better)
Translates to: CALILHECLTEASPSLKVHSLKS*HKASRS
Trigger: TGATCTAGAAGCTTTGTGTCAAGACTTTAAAGAGTG...CACCTTAAGTGATGGGGAGGCTTCAGTGAGGCACTCGTGTAAAATCAAAGCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR TCA 90 bp GTAAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCCGAGAGACTCGTGTATaGAAAGCAGCAGCAGATATT +
Preference number: 4 (lower is better)
Translates to: VKENFPLTGYILLLNLAVRETRV*KAAADI
Trigger: AATATCTGCTGCTGCTTTTCATACACGAGTCTCTCG...GACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR TCA 90 bp AGCTGTCTCATGGCCTATCTGGATATAGTTCTATTGAGGAATGTGAAGTTTAAATTAAAGGGGCGTGGCTaGGGTCAACACTCATTGACC +
Preference number: 4 (lower is better)
Translates to: SCLMAYLDIVLLRNVKFKLKGRG*GQHSLT
Trigger: GGTCAATGAGTGTTGACCTCAGCCACGCCCCTTTAA...TTTAAACTTCACATTCCTCAATAGAACTATATCCAGATAGGCCATGAGACAGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR TCA 90 bp GTTTGGAACAGCCGCCACTTCACCACTCGCTTTATTTCATGTAAAGGAAAACTTACAGGTGAGAATCTCTaGTGTGGAAAGAGCCATCAT +
Preference number: 4 (lower is better)
Translates to: VWNSRHFTTRFISCKGKLTGENL*CGKSHH
Trigger: ATGATGGCTCTTTCCACATCAGAGATTCTCACCTGT...AAGTTTTCCTTTACATGAAATAAAGCGAGTGGTGAAGTGGCGGCTGTTCCAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR TCA 90 bp AAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCCTACAGGTGAGAATCTCTaGTGTGGAAAGAGCCATCAT +
Preference number: 4 (lower is better)
Translates to: KGKLPTNWLHPSVKPSRPTGENL*CGKSHH
Trigger: ATGATGGCTCTTTCCACATCAGAGATTCTCACCTGT...AGGACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
CDS-3UTR GCA 90 bp GGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCCTTCTACAAGTCTGCGTATTTaGACTTGTGTTCACACTCTC +
Preference number: 4 (lower is better)
Translates to: GKLPTNWLHPSVKPSRPSTSLRI*TCVHTL
Trigger: GAGAGTGTGAACACAAGTGCAAATACGCAGACTTGT...AGAAGGACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
CDS-3UTR GCA 90 bp GATTTAATTTGTTCTTGGCTGTATGTTGGCTCCCAAACAGTGCCTGTTTTTATCGTCACCTGGTTCACCTaGAGACAGACTTCTGTGTCT +
Preference number: 4 (lower is better)
Translates to: DLICSWLYVGSQTVPVFIVTWFT*RQTSVS
Trigger: AGACACAGAAGTCTGTCTGCAGGTGAACCAGGTGAC...GATAAAAACAGGCACTGTTTGGGAGCCAACATACAGCCAAGAACAAATTAAATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CCA 90 bp GTAAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCGTTGGGAGATGGAATTaGAAAATCCTTCCCATCTGG +
Preference number: 4 (lower is better)
Translates to: VKENFPLTGYILLLNLAVVGRWN*KILPIW
Trigger: CCAGATGGGAAGGATTTTCCAATTCCATCTCCCAAC...GACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CCA 90 bp TTTCCTTTCACATTTTCAAGTTGCTTCACAAGTTCGGTAGGGTCAAGAGTTTTCGACAGTGCCTCGTGTTaGTGGCTATCATTTCAGAGC +
Preference number: 4 (lower is better)
Translates to: FPFTFSSCFTSSVGSRVFDSASC*WLSFQS
Trigger: GCTCTGAAATGATAGCCACCAACACGAGGCACTGTC...GAAAACTCTTGACCCTACCGAACTTGTGAAGCAACTTGAAAATGTGAAAGGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CCA 90 bp GTAAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCCACTATCTGAGTCTGTaGAAGCCACATCCTTTGTGT +
Preference number: 4 (lower is better)
Translates to: VKENFPLTGYILLLNLAVHYLSL*KPHPLC
Trigger: ACACAAAGGATGTGGCTTCCACAGACTCAGATAGTG...GACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CCA 90 bp GATTTAATTTGTTCTTGGCTGTATGTTGGCTCCCAAACAGTGCCTGTTTTTATCGTTCACACTCTCTGCTaGGCTCTGGCAGCTTGTATT +
Preference number: 4 (lower is better)
Translates to: DLICSWLYVGSQTVPVFIVHTLC*ALAACI
Trigger: AATACAAGCTGCCAGAGCCCAGCAGAGAGTGTGAAC...GATAAAAACAGGCACTGTTTGGGAGCCAACATACAGCCAAGAACAAATTAAATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
3UTR CAA 72 bp TTAAAAATGTGTCTGATGAAGGTCTTTGGCCGCCATTaGTCAGAGGCTCAGACTCTGTACTGTAATACTCCT +
Preference number: 4 (lower is better)
Translates to: LKMCLMKVFGRH*SEAQTLYCNTP
Trigger: AGGAGTATTACAGTACAGAGTCTGAGCCTCTGACAAATGGCGGCCAAAGACCTTCATCAGACACATTTTTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
CDS-3UTR TCA 90 bp AGCTGTCTCATGGCCTATCTGGATATAGTTCTATTGAGGAATGTGAAGTTTAAAGCCACATCCTTTGTGTaGCTCCCTTCTGAGGTCATT +
Preference number: 4 (lower is better)
Translates to: SCLMAYLDIVLLRNVKFKATSFV*LPSEVI
Trigger: AATGACCTCAGAAGGGAGTCACACAAAGGATGTGGC...TTTAAACTTCACATTCCTCAATAGAACTATATCCAGATAGGCCATGAGACAGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR TCA 90 bp AAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCCTTCCTCCAGAAAGTGTTaGATATTCAGAAGGGAAGAG +
Preference number: 4 (lower is better)
Translates to: KGKLPTNWLHPSVKPSRPSSRKC*IFRREE
Trigger: CTCTTCCCTTCTGAATATTCAACACTTTCTGGAGGA...AGGACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
CDS-3UTR GCA 90 bp AGCTGTCTCATGGCCTATCTGGATATAGTTCTATTGAGGAATGTGAAGTTTAAATTCTCTGTTTGTGTGTaGTGGGGAGAGGCATGTGTC +
Preference number: 4 (lower is better)
Translates to: SCLMAYLDIVLLRNVKFKFSVCV*WGEACV
Trigger: GACACATGCCTCTCCCCAGCACACACAAACAGAGAA...TTTAAACTTCACATTCCTCAATAGAACTATATCCAGATAGGCCATGAGACAGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR GCA 90 bp GTAAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCACAAGTCTGCGTATTTaGACTTGTGTTCACACTCTC +
Preference number: 4 (lower is better)
Translates to: VKENFPLTGYILLLNLAVTSLRI*TCVHTL
Trigger: GAGAGTGTGAACACAAGTGCAAATACGCAGACTTGT...GACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
CDS-3UTR GCA 90 bp GTAAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCCATTGGCATTACTGTTaGAACAGTTTCATCCTCCAG +
Preference number: 4 (lower is better)
Translates to: VKENFPLTGYILLLNLAVHWHYC*NSFILQ
Trigger: CTGGAGGATGAAACTGTTGCAACAGTAATGCCAATG...GACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
CDS-3UTR TCA 90 bp CATGTAAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCCTGGCAGCTTGTATTTaGGTTCCTTTTCATTGCCTT +
Preference number: 4 (lower is better)
Translates to: HVKENFPLTGYILLLNLALAACI*VPFHCL
Trigger: AAGGCAATGAAAAGGAACTCAAATACAAGCTGCCAG...GGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTTACATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
CDS-3UTR TCA 90 bp CATGTAAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGGCGAGGATTTAGGATaGATTATAGCTTTCTGGTCA +
Preference number: 4 (lower is better)
Translates to: HVKENFPLTGYILLLNLAGEDLG*IIAFWS
Trigger: TGACCAGAAAGCTATAATTCATCCTAAATCCTCGCC...GGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTTACATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
CDS-3UTR TCA 90 bp GGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCCTTCTGTTGGGAGATGGAACTaGTATATATTGAAATCTGCA +
Preference number: 4 (lower is better)
Translates to: GKLPTNWLHPSVKPSRPSVGRWN*YILKSA
Trigger: TGCAGATTTCAATATATATCAGTTCCATCTCCCAAC...AGAAGGACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
CDS-3UTR GCA 90 bp CATGTAAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCACTTTGGGTAGCATCTaGCTCAATTCGAATCATCTG +
Preference number: 4 (lower is better)
Translates to: HVKENFPLTGYILLLNLATLGSI*LNSNHL
Trigger: CAGATGATTCGAATTGAGGCAGATGCTACCCAAAGT...GGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTTACATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CCA 90 bp AAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCCTGCTGGCTATATAGGTTaGGAGATGGAATTGGAAAAT +
Preference number: 4 (lower is better)
Translates to: KGKLPTNWLHPSVKPSRPAGYIG*EMELEN
Trigger: ATTTTCCAATTCCATCTCCCAACCTATATAGCCAGC...AGGACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR TCA 90 bp TTTCCTTTCACATTTTCAAGTTGCTTCACAAGTTCGGTAGGGTCAAGAGTTTTCCTTCCTTTGCTCCGTTaGTTTCTCTATTGCTTCACT +
Preference number: 4 (lower is better)
Translates to: FPFTFSSCFTSSVGSRVFLPLLR*FLYCFT
Trigger: AGTGAAGCAATAGAGAAATCAACGGAGCAAAGGAAG...GAAAACTCTTGACCCTACCGAACTTGTGAAGCAACTTGAAAATGTGAAAGGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR TCA 90 bp AGACTCGTGTATGAAAAGCAGCAGCAGATATTGGTAGTGATTGATCTGCATACTTTAGCTTTTGACGGTTaGGGTAATACTGAAGGTGTT +
Preference number: 4 (lower is better)
Translates to: RLVYEKQQQILVVIDLHTLAFDG*GNTEGV
Trigger: AACACCTTCAGTATTACCTCAACCGTCAAAAGCTAA...AGTATGCAGATCAATCACTACCAATATCTGCTGCTGCTTTTCATACACGAGTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
CDS-3UTR TCA 90 bp GTTTGGAACAGCCGCCACTTCACCACTCGCTTTATTTCATGTAAAGGAAAACTTTCTGCTGTAGAGACCTaGTATATATTGAAATCTGCA +
Preference number: 4 (lower is better)
Translates to: VWNSRHFTTRFISCKGKLSAVET*YILKSA
Trigger: TGCAGATTTCAATATATATCAGGTCTCTACAGCAGA...AAGTTTTCCTTTACATGAAATAAAGCGAGTGGTGAAGTGGCGGCTGTTCCAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR TCA 90 bp TTTCATGTAAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTACCCATCCTCTTCATTTaGTGGAGAAGCTCATCTCTG +
Preference number: 4 (lower is better)
Translates to: FHVKENFPLTGYILLLNLPILFI*WRSSSL
Trigger: CAGAGATGAGCTTCTCCATCAAATGAAGAGGATGGG...TAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTTACATGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
3UTR CAA 72 bp TTGAAAGCTTTCGCTCCAATTCTGATGACGATAGAGTaGACAGAAACAGTAATTCCCTCAACAACCTTCTCA +
Preference number: 4 (lower is better)
Translates to: LKAFAPILMTIE*TETVIPSTTFS
Trigger: TGAGAAGGTTGTTGAGGGAATTACTGTTTCTGTCAACTCTATCGTCATCAGAATTGGAGCGAAAGCTTTCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219712.2
CDS-3UTR TCA 90 bp TTTCCTTTCACATTTTCAAGTTGCTTCACAAGTTCGGTAGGGTCAAGAGTTTTCATGCTCATCGGATTTTaGGCTGTCATTCAACTTGTA +
Preference number: 4 (lower is better)
Translates to: FPFTFSSCFTSSVGSRVFMLIGF*AVIQLV
Trigger: TACAAGTTGAATGACAGCTCAAAATCCGATGAGCAT...GAAAACTCTTGACCCTACCGAACTTGTGAAGCAACTTGAAAATGTGAAAGGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR TCA 90 bp AGCTGTCTCATGGCCTATCTGGATATAGTTCTATTGAGGAATGTGAAGTTTAAAGTATTAAGGGTCACTTaGTCACAAGTCTGGAACTCT +
Preference number: 4 (lower is better)
Translates to: SCLMAYLDIVLLRNVKFKVLRVT*SQVWNS
Trigger: AGAGTTCCAGACTTGTGATCAAGTGACCCTTAATAC...TTTAAACTTCACATTCCTCAATAGAACTATATCCAGATAGGCCATGAGACAGCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR TCA 90 bp AGCTGTCTCATGGCCTATCTGGATATAGTTCTATTGAGGAATGTGAAGTTTAAAGGCGAGGATTTAGGATaGATTATAGCTTTCTGGTCA +
Preference number: 4 (lower is better)
Translates to: SCLMAYLDIVLLRNVKFKGEDLG*IIAFWS
Trigger: TGACCAGAAAGCTATAATTCATCCTAAATCCTCGCC...TTTAAACTTCACATTCCTCAATAGAACTATATCCAGATAGGCCATGAGACAGCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
3UTR CAA 72 bp TCCAGCTGTCTCATGGCCTATCTGGATATAGTTCTATaGAGGAATGTGAAGTTTAAAATAGACACCACTTAC +
Preference number: 4 (lower is better)
Translates to: SSCLMAYLDIVL*RNVKFKIDTTY
Trigger: GTAAGTGGTGTCTATTTTAAACTTCACATTCCTCAATAGAACTATATCCAGATAGGCCATGAGACAGCTGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR TCA 90 bp GATTTAATTTGTTCTTGGCTGTATGTTGGCTCCCAAACAGTGCCTGTTTTTATCTCACTTCAGAAGGAATaGCAAACTTTAGCATTAAGC +
Preference number: 4 (lower is better)
Translates to: DLICSWLYVGSQTVPVFISLQKE*QTLALS
Trigger: GCTTAATGCTAAAGTTTGTCATTCCTTCTGAAGTGA...GATAAAAACAGGCACTGTTTGGGAGCCAACATACAGCCAAGAACAAATTAAATC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR TCA 90 bp TTTCATGTAAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTATCCTCCAGAAAGTGTTaGATATTCAGAAGGGAAGAG +
Preference number: 4 (lower is better)
Translates to: FHVKENFPLTGYILLLNLSSRKC*IFRREE
Trigger: CTCTTCCCTTCTGAATATTCAACACTTTCTGGAGGA...TAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTTACATGAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
CDS-3UTR GCA 90 bp TTTCCTTTCACATTTTCAAGTTGCTTCACAAGTTCGGTAGGGTCAAGAGTTTTCAGATCGACATTGTTCTaGTGTAGAGACCTGATATAT +
Preference number: 4 (lower is better)
Translates to: FPFTFSSCFTSSVGSRVFRSTLF*CRDLIY
Trigger: ATATATCAGGTCTCTACAGCAGAACAATGTCGATCT...GAAAACTCTTGACCCTACCGAACTTGTGAAGCAACTTGAAAATGTGAAAGGAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
3UTR CAA 72 bp ACATTTAATGGAATGTACAGGAATGCTTTAAGTCACTaGCCCAGTGCCCTGTATTTGTGCTTTGATTTTACA +
Preference number: 4 (lower is better)
Translates to: TFNGMYRNALSH*PSALYLCFDFT
Trigger: TGTAAAATCAAAGCACAAATACAGGGCACTGGGCAAGTGACTTAAAGCATTCCTGTACATTCCATTAAATGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CCA 90 bp TTTCATGTAAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAAAATCCAGCAGAAACTaGTTTAACCACAGAATGCTC +
Preference number: 4 (lower is better)
Translates to: FHVKENFPLTGYILLLNLKSSRN*FNHRML
Trigger: GAGCATTCTGTGGTTAAACCAGTTTCTGCTGGATTT...TAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTTACATGAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CAA 90 bp GCTCAGAAGTTCATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATTGCGTGCCCTCTGAGTaGGTGCTGACAGCCTCTGGA +
Preference number: 5 (lower is better)
Translates to: AQKFMSHPSSSVRLLLLNCVPSE*VLTASG
Trigger: TCCAGAGGCTGTCAGCACCAACTCAGAGGGCACGCA...ATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATGAACTTCTGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CAA 90 bp CATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATCCATACCAGACCGTGTGAGGCTGATCTaGATGGCAACCTGCCTTCAC +
Preference number: 5 (lower is better)
Translates to: HVPSVLLCETALAESIPDRVRLI*MATCLH
Trigger: GTGAAGGCAGGTTGCCATCAAGATCAGCCTCACACG...GTCTGGTATGGATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CAA 90 bp CACTCCTCTCCACCACGAGACGGTCAATATGCACAGTCACAGGGCTCGGCTGCAGAGTCCCTTTCAGAGTaGAGTCTTTCTCTGTTTGTG +
Preference number: 5 (lower is better)
Translates to: HSSPPRDGQYAQSQGSAAESLSE*SLSLFV
Trigger: CACAAACAGAGAAAGACTCAACTCTGAAAGGGACTC...TGCAGCCGAGCCCTGTGACTGTGCATATTGACCGTCTCGTGGTGGAGAGGAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
CDS-3UTR CAA 90 bp AACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCCTTCTCCAGGCTCGTCTGGGTGGCTaGGGTGACACTGCTGTGCAT +
Preference number: 5 (lower is better)
Translates to: NFPLTGYILLLNLAVLLQARLGG*GDTAVH
Trigger: ATGCACAGCAGTGTCACCCAAGCCACCCAGACGAGC...CTGGAGAAGGACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
CDS TCA 90 bp CAGTCAGCTGCCAGGGTTCTTAGACTCTTCTGGTACTCACTTAGCTaGTTGTGCAATTCACAGCACACCAATCTCCACCACAGCCAGCAG +
Preference number: 5 (lower is better)
Translates to: QSAARVLRLFWYSLS*LCNSQHTNLHHSQQ
Trigger: CTGCTGGCTGTGGTGGAGATTGGTGTGCTGTGAATTGCACAATCAGCTAAGTGAGTACCAGAAGAGTCTAAGAACCCTGGCAGCTGACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219712.2
CDS-3UTR CAA 90 bp TGTGCTTTGATTTTACACGAGTGCCTCACTGAAGCCTCCCCATCACTTAAGGTGGTCTTTGGCCGCCATTaGTCAGAGGCTCAGACTCTG +
Preference number: 5 (lower is better)
Translates to: CALILHECLTEASPSLKVVFGRH*SEAQTL
Trigger: CAGAGTCTGAGCCTCTGACAAATGGCGGCCAAAGAC...CACCTTAAGTGATGGGGAGGCTTCAGTGAGGCACTCGTGTAAAATCAAAGCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CAA 90 bp GGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCCTTCTTGCGTGCCCTCTGAGTaGGTGCTGACAGCCTCTGGA +
Preference number: 5 (lower is better)
Translates to: GKLPTNWLHPSVKPSRPSCVPSE*VLTASG
Trigger: TCCAGAGGCTGTCAGCACCAACTCAGAGGGCACGCA...AGAAGGACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
CDS-3UTR CAA 90 bp TGTGCTTTGATTTTACACGAGTGCCTCACTGAAGCCTCCCCATCACTTAAGGTGTTATTGCAGAACACCTaGCTGATGGCCAGCCAGGTG +
Preference number: 5 (lower is better)
Translates to: CALILHECLTEASPSLKVLLQNT*LMASQV
Trigger: CACCTGGCTGGCCATCAGCAAGGTGTTCTGCAATAA...CACCTTAAGTGATGGGGAGGCTTCAGTGAGGCACTCGTGTAAAATCAAAGCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CAA 90 bp CATGTAAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCCTCAGGTCGGGAGCATaGGCAGCCTGTGGGGTCTTG +
Preference number: 5 (lower is better)
Translates to: HVKENFPLTGYILLLNLALRSGA*AACGVL
Trigger: CAAGACCCCACAGGCTGCCAATGCTCCCGACCTGAG...GGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTTACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CAA 90 bp GAAGTTCATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATCCATAGGTTGGGAGATGGAATaGGAAAATCCTTCCCATCTG +
Preference number: 5 (lower is better)
Translates to: EVHVPSVLLCETALAESIGWEME*ENPSHL
Trigger: CAGATGGGAAGGATTTTCCAATTCCATCTCCCAACC...TATGGATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATGAACTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CAA 90 bp GCTCAGAAGTTCATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATAAAAGAAGTGCCTTTTaGCAGGTTTGTGTCACTGGC +
Preference number: 5 (lower is better)
Translates to: AQKFMSHPSSSVRLLLLNKRSAF*QVCVTG
Trigger: GCCAGTGACACAAACCTGCAAAAAGGCACTTCTTTT...ATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATGAACTTCTGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CAA 90 bp AACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCCTTCTCCAGTGGAAGCCACATCCTTaGTGTGACTCCCTTCTGAGG +
Preference number: 5 (lower is better)
Translates to: NFPLTGYILLLNLAVLLQWKPHP*CDSLLR
Trigger: CCTCAGAAGGGAGTCACACAAAGGATGTGGCTTCCA...CTGGAGAAGGACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CAA 90 bp GCTCAGAAGTTCATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATAAGAGACTTTGCATATaGCACCATAGCCTTCAACTG +
Preference number: 5 (lower is better)
Translates to: AQKFMSHPSSSVRLLLLNKRLCI*HHSLQL
Trigger: CAGTTGAAGGCTATGGTGCAATATGCAAAGTCTCTT...ATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATGAACTTCTGAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CAA 90 bp GAAGTTCATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATCCATAATGCATTTTGGTATCTaGTTCGTGGGCATGTCTCTG +
Preference number: 5 (lower is better)
Translates to: EVHVPSVLLCETALAESIMHFGI*FVGMSL
Trigger: CAGAGACATGCCCACGAACAAGATACCAAAATGCAT...TATGGATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATGAACTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CAA 90 bp GAAGTTCATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATCCATACTGATGACGATAGAGTaGACAGAAACAGTAATTCCC +
Preference number: 5 (lower is better)
Translates to: EVHVPSVLLCETALAESILMTIE*TETVIP
Trigger: GGGAATTACTGTTTCTGTCAACTCTATCGTCATCAG...TATGGATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATGAACTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS TCA 90 bp GGGAAATCACTAGATGATGGGAGGTTTCCTTCACATCAAAGTCATTaGACAGTTTCACAATTGCATCACTCAGGTCGGGAGCATTGGCAG +
Preference number: 5 (lower is better)
Translates to: GKSLDDGRFPSHQSH*TVSQLHHSGREHWQ
Trigger: CTGCCAATGCTCCCGACCTGAGTGATGCAATTGTGAAACTGTTCAATGACTTTGATGTGAAGGAAACCTCCCATCATCTAGTGATTTCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000220375.2
CDS-3UTR CAA 90 bp TGGAACAGCCGCCACTTCACCACTCGCTTTATTTCATGTAAAGGAAAACTTCCCGGTATTAAGGGTCACTaGATCACAAGTCTGGAACTC +
Preference number: 5 (lower is better)
Translates to: WNSRHFTTRFISCKGKLPGIKGH*ITSLEL
Trigger: GAGTTCCAGACTTGTGATCAAGTGACCCTTAATACC...GGGAAGTTTTCCTTTACATGAAATAAAGCGAGTGGTGAAGTGGCGGCTGTTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CAA 90 bp TGTGCTTTGATTTTACACGAGTGCCTCACTGAAGCCTCCCCATCACTTAAGGTGTCTGGCAGCTTGTATTaGAGTTCCTTTTCATTGCCT +
Preference number: 5 (lower is better)
Translates to: CALILHECLTEASPSLKVSGSLY*SSFSLP
Trigger: AGGCAATGAAAAGGAACTCAAATACAAGCTGCCAGA...CACCTTAAGTGATGGGGAGGCTTCAGTGAGGCACTCGTGTAAAATCAAAGCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CAA 90 bp TGGAACAGCCGCCACTTCACCACTCGCTTTATTTCATGTAAAGGAAAACTTCCCGTAATGTCGAGAAAGTaGGCTGACTGTGAAGGCAAA +
Preference number: 5 (lower is better)
Translates to: WNSRHFTTRFISCKGKLPVMSRK*ADCEGK
Trigger: TTTGCCTTCACAGTCAGCCAACTTTCTCGACATTAC...GGGAAGTTTTCCTTTACATGAAATAAAGCGAGTGGTGAAGTGGCGGCTGTTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS GCA 90 bp GTCGGGGATTTAGGAGGTGAACCTAAATTACGGTCCTTCATGGCCTaGTTAAGCATTTCCACGTTGCATTCGAATTCATGTAACAACTCA +
Preference number: 5 (lower is better)
Translates to: VGDLGGEPKLRSFMA*LSISTLHSNSCNNS
Trigger: TGAGTTGTTACATGAATTCGAATGCAACGTGGAAATGCTTAAGCAGGCCATGAAGGACCGTAATTTAGGTTCACCTCCTAAATCCCCGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020112.7
ENSMUST00000218776.2
ENSMUST00000220375.2
CDS-3UTR CAA 90 bp AAGTTCATGTCCCATCCGTCCTCCTCTGTGAGACTGCTCTTGCTGAATCCATACTTAAGCATTTCCACGTaGCATTCGAATTCATGTAAC +
Preference number: 5 (lower is better)
Translates to: KFMSHPSSSVRLLLLNPYLSIST*HSNSCN
Trigger: GTTACATGAATTCGAATGCAACGTGGAAATGCTTAA...GTATGGATTCAGCAAGAGCAGTCTCACAGAGGAGGACGGATGGGACATGAACTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CAA 90 bp GATTTAATTTGTTCTTGGCTGTATGTTGGCTCCCAAACAGTGCCTGTTTTTATCGGACAGTGCCTCGTGTaGGTGGCTATCATTTCAGAG +
Preference number: 5 (lower is better)
Translates to: DLICSWLYVGSQTVPVFIGQCLV*VAIISE
Trigger: CTCTGAAATGATAGCCACCAACACGAGGCACTGTCC...GATAAAAACAGGCACTGTTTGGGAGCCAACATACAGCCAAGAACAAATTAAATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CAA 90 bp AAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCCTTACCAGTTACAGGGTTaGAAGGTGGGTTATGGTTGC +
Preference number: 5 (lower is better)
Translates to: KGKLPTNWLHPSVKPSRPYQLQG*KVGYGC
Trigger: GCAACCATAACCCACCTTCAAACCCTGTAACTGGTA...AGGACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CAA 90 bp AACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCCTTCTCCAGAGCTGGCTATATAGGTaGGGAGATGGAACTGATATA +
Preference number: 5 (lower is better)
Translates to: NFPLTGYILLLNLAVLLQSWLYR*GDGTDI
Trigger: TATATCAGTTCCATCTCCCAACCTATATAGCCAGCT...CTGGAGAAGGACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
CDS-3UTR CAA 90 bp GGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCCTTCTTCATTGGCATTACTGTaGCAACAGTTTCATCCTCCA +
Preference number: 5 (lower is better)
Translates to: GKLPTNWLHPSVKPSRPSSLALL*QQFHPP
Trigger: TGGAGGATGAAACTGTTGCAACAGTAATGCCAATGA...AGAAGGACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
CDS-3UTR CAA 90 bp GTAAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCGTAATGTCGAGAAAGTaGGCTGACTGTGAAGGCAAA +
Preference number: 5 (lower is better)
Translates to: VKENFPLTGYILLLNLAVVMSRK*ADCEGK
Trigger: TTTGCCTTCACAGTCAGCCAACTTTCTCGACATTAC...GACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
CDS CCA 90 bp CACAGAATGCTCCTTTCATCTACAGTAAACTGTAGAGCATTCAGCTaGCTATATAGGTTGGGAGATGGAATTGGAAAATCCTTCCCATCT +
Preference number: 5 (lower is better)
Translates to: HRMLLSSTVNCRAFS*LYRLGDGIGKSFPS
Trigger: AGATGGGAAGGATTTTCCAATTCCATCTCCCAACCTATATAGCCAGCTGAATGCTCTACAGTTTACTGTAGATGAAAGGAGCATTCTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000220375.2
CDS-3UTR CAA 90 bp TTTCCTTTCACATTTTCAAGTTGCTTCACAAGTTCGGTAGGGTCAAGAGTTTTCCTGTGTGAAAGAGAGTaGCATAGCACCTCCACTAAC +
Preference number: 5 (lower is better)
Translates to: FPFTFSSCFTSSVGSRVFLCERE*HSTSTN
Trigger: GTTAGTGGAGGTGCTATGCAACTCTCTTTCACACAG...GAAAACTCTTGACCCTACCGAACTTGTGAAGCAACTTGAAAATGTGAAAGGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CAA 90 bp GTAAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCAGCTGGCTATATAGGTaGGGAGATGGAATTGGAAAA +
Preference number: 5 (lower is better)
Translates to: VKENFPLTGYILLLNLAVSWLYR*GDGIGK
Trigger: TTTTCCAATTCCATCTCCCAACCTATATAGCCAGCT...GACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CAA 90 bp GTAAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTAGCCGTCTCTGGCAGCTTGTATTaGAGTTCCTTTTCATTGCCT +
Preference number: 5 (lower is better)
Translates to: VKENFPLTGYILLLNLAVSGSLY*SSFSLP
Trigger: AGGCAATGAAAAGGAACTCAAATACAAGCTGCCAGA...GACGGCTAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
CDS TCA 90 bp AGTCTAACAACAACAGAACTAGACATGAGCTTAGCTTTTGACGGTTaGGGTAATACTGAAGGTGTTTTAGGAGTCCCTTTCAGAGTTGAG +
Preference number: 5 (lower is better)
Translates to: SLTTTELDMSLAFDG*GNTEGVLGVPFRVE
Trigger: CTCAACTCTGAAAGGGACTCCTAAAACACCTTCAGTATTACCTCAACCGTCAAAAGCTAAGCTCATGTCTAGTTCTGTTGTTGTTAGACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020112.7
ENSMUST00000218776.2
ENSMUST00000220375.2
CDS-3UTR CAA 90 bp TTTCCTTTCACATTTTCAAGTTGCTTCACAAGTTCGGTAGGGTCAAGAGTTTTCGAGTCCCTTTCAGAGTaGAGTCTTTCTCTGTTTGTG +
Preference number: 5 (lower is better)
Translates to: FPFTFSSCFTSSVGSRVFESLSE*SLSLFV
Trigger: CACAAACAGAGAAAGACTCAACTCTGAAAGGGACTC...GAAAACTCTTGACCCTACCGAACTTGTGAAGCAACTTGAAAATGTGAAAGGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS GCA 90 bp TGCTCCGTTGATTTCTCTATTGCTTCACTAAGAGACTTTGCATATTaGACCATAGCCTTCAACTGGGAATCCGTTAAAACCCATAACAAA +
Preference number: 5 (lower is better)
Translates to: CSVDFSIASLRDFAY*TIAFNWESVKTHNK
Trigger: TTTGTTATGGGTTTTAACGGATTCCCAGTTGAAGGCTATGGTGCAATATGCAAAGTCTCTTAGTGAAGCAATAGAGAAATCAACGGAGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000220375.2
CDS-3UTR CAA 90 bp TTTCCTTTCACATTTTCAAGTTGCTTCACAAGTTCGGTAGGGTCAAGAGTTTTCAAGCAGCAGCAGATATaGGTAGTGATTGATCTGCAT +
Preference number: 5 (lower is better)
Translates to: FPFTFSSCFTSSVGSRVFKQQQI*VVIDLH
Trigger: ATGCAGATCAATCACTACCAATATCTGCTGCTGCTT...GAAAACTCTTGACCCTACCGAACTTGTGAAGCAACTTGAAAATGTGAAAGGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS-3UTR CAA 90 bp TCCGCATCTGAAGAGGAAGAGGAAAACCTTAAAAATGTGTCTGATGAAGGTCTTTTAAGCATTTCCACGTaGCATTCGAATTCATGTAAC +
Preference number: 5 (lower is better)
Translates to: SASEEEEENLKNVSDEGLLSIST*HSNSCN
Trigger: GTTACATGAATTCGAATGCAACGTGGAAATGCTTAA...AAGACCTTCATCAGACACATTTTTAAGGTTTTCCTCTTCCTCTTCAGATGCGGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2
CDS CCA 90 bp ATTGCTTCACTAAGAGACTTTGCATATTGCACCATAGCCTTCAACTaGGAATCCGTTAAAACCCATAACAAATCATCCAGAATTAGAACT +
Preference number: 5 (lower is better)
Translates to: IASLRDFAYCTIAFN*ESVKTHNKSSRIRT
Trigger: AGTTCTAATTCTGGATGATTTGTTATGGGTTTTAACGGATTCCCAGTTGAAGGCTATGGTGCAATATGCAAAGTCTCTTAGTGAAGCAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000220375.2
CDS-3UTR CAA 90 bp TTTCATGTAAAGGAAAACTTCCCACTAACTGGTTACATCCTTCTGTTAAACCTATCATTGGCATTACTGTaGCAACAGTTTCATCCTCCA +
Preference number: 5 (lower is better)
Translates to: FHVKENFPLTGYILLLNLSLALL*QQFHPP
Trigger: TGGAGGATGAAACTGTTGCAACAGTAATGCCAATGA...TAGGTTTAACAGAAGGATGTAACCAGTTAGTGGGAAGTTTTCCTTTACATGAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
CDS CAA 72 bp TCACTCAGGTCGGGAGCATTGGCAGCCTGTGGGGTCTaGACGTGCTGTGCAGATGAAGTGACTGTAGAGCTC +
Preference number: 6 (lower is better)
Translates to: SLRSGALAACGV*TCCADEVTVEL
Trigger: GAGCTCTACAGTCACTTCATCTGCACAGCACGTCAAGACCCCACAGGCTGCCAATGCTCCCGACCTGAGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000220375.2
CDS CAA 72 bp AACAGTTTCACAATTGCATCACTCAGGTCGGGAGCATaGGCAGCCTGTGGGGTCTTGACGTGCTGTGCAGAT +
Preference number: 6 (lower is better)
Translates to: NSFTIASLRSGA*AACGVLTCCAD
Trigger: ATCTGCACAGCACGTCAAGACCCCACAGGCTGCCAATGCTCCCGACCTGAGTGATGCAATTGTGAAACTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000220375.2
CDS TCA 72 bp TTCTCCATTAACACCAGTGATTCTAAACACCACGACTaGCATCAGATCGTCGCGGTTCTCCTGCGTGCCCTC +
Preference number: 6 (lower is better)
Translates to: FSINTSDSKHHD*HQIVAVLLRAL
Trigger: GAGGGCACGCAGGAGAACCGCGACGATCTGATGTCAGTCGTGGTGTTTAGAATCACTGGTGTTAATGGAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000218607.2
CDS CAA 90 bp AAGTCATTGAACAGTTTCACAATTGCATCACTCAGGTCGGGAGCATaGGCAGCCTGTGGGGTCTTGACGTGCTGTGCAGATGAAGTGACT +
Preference number: 6 (lower is better)
Translates to: KSLNSFTIASLRSGA*AACGVLTCCADEVT
Trigger: AGTCACTTCATCTGCACAGCACGTCAAGACCCCACAGGCTGCCAATGCTCCCGACCTGAGTGATGCAATTGTGAAACTGTTCAATGACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000220375.2
CDS TCA 72 bp GCCAGGGTTCTTAGACTCTTCTGGTACTCACTTAGCTaGTTGTGCAATTCACAGCACACCAATCTCCACCAC +
Preference number: 6 (lower is better)
Translates to: ARVLRLFWYSLS*LCNSQHTNLHH
Trigger: GTGGTGGAGATTGGTGTGCTGTGAATTGCACAATCAGCTAAGTGAGTACCAGAAGAGTCTAAGAACCCTGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219712.2
CDS CAA 90 bp AGGTTCTTCAGCTCCCCCTCTCCTTTAAGGGTGCTGAGGTTTATTTaGTCAGGAGATAAGTTTTTAGTGAATCTGGAGAGGTGCTTCAGG +
Preference number: 6 (lower is better)
Translates to: RFFSSPSPLRVLRFI*SGDKFLVNLERCFR
Trigger: CCTGAAGCACCTCTCCAGATTCACTAAAAACTTATCTCCTGACAAAATAAACCTCAGCACCCTTAAAGGAGAGGGGGAGCTGAAGAACCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS CAA 72 bp AGCTCCCCCTCTCCTTTAAGGGTGCTGAGGTTTATTTaGTCAGGAGATAAGTTTTTAGTGAATCTGGAGAGG +
Preference number: 6 (lower is better)
Translates to: SSPSPLRVLRFI*SGDKFLVNLER
Trigger: CCTCTCCAGATTCACTAAAAACTTATCTCCTGACAAAATAAACCTCAGCACCCTTAAAGGAGAGGGGGAGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000020112.7
CDS GCA 72 bp TTAGGAGGTGAACCTAAATTACGGTCCTTCATGGCCTaGTTAAGCATTTCCACGTTGCATTCGAATTCATGT +
Preference number: 6 (lower is better)
Translates to: LGGEPKLRSFMA*LSISTLHSNSC
Trigger: ACATGAATTCGAATGCAACGTGGAAATGCTTAAGCAGGCCATGAAGGACCGTAATTTAGGTTCACCTCCTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020112.7
ENSMUST00000218776.2
ENSMUST00000220375.2
CDS CAA 72 bp TTACGGTCCTTCATGGCCTGCTTAAGCATTTCCACGTaGCATTCGAATTCATGTAACAACTCATTAGCCCAT +
Preference number: 6 (lower is better)
Translates to: LRSFMACLSIST*HSNSCNNSLAH
Trigger: ATGGGCTAATGAGTTGTTACATGAATTCGAATGCAACGTGGAAATGCTTAAGCAGGCCATGAAGGACCGTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020112.7
ENSMUST00000218776.2
ENSMUST00000220375.2
CDS TCA 72 bp ACAACAGAACTAGACATGAGCTTAGCTTTTGACGGTTaGGGTAATACTGAAGGTGTTTTAGGAGTCCCTTTC +
Preference number: 6 (lower is better)
Translates to: TTELDMSLAFDG*GNTEGVLGVPF
Trigger: GAAAGGGACTCCTAAAACACCTTCAGTATTACCTCAACCGTCAAAAGCTAAGCTCATGTCTAGTTCTGTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020112.7
ENSMUST00000218776.2
ENSMUST00000220375.2
CDS CCA 72 bp CTCCTTTCATCTACAGTAAACTGTAGAGCATTCAGCTaGCTATATAGGTTGGGAGATGGAATTGGAAAATCC +
Preference number: 6 (lower is better)
Translates to: LLSSTVNCRAFS*LYRLGDGIGKS
Trigger: GGATTTTCCAATTCCATCTCCCAACCTATATAGCCAGCTGAATGCTCTACAGTTTACTGTAGATGAAAGGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000220375.2
CDS CCA 72 bp CTAAGAGACTTTGCATATTGCACCATAGCCTTCAACTaGGAATCCGTTAAAACCCATAACAAATCATCCAGA +
Preference number: 6 (lower is better)
Translates to: LRDFAYCTIAFN*ESVKTHNKSSR
Trigger: TCTGGATGATTTGTTATGGGTTTTAACGGATTCCCAGTTGAAGGCTATGGTGCAATATGCAAAGTCTCTTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000220375.2
CDS GCA 72 bp TTGTTCTGCTGTAGAGACCTGATATATATTGAAATCTaGAAGTCTAACAACAACAGAACTAGACATGAGCTT +
Preference number: 6 (lower is better)
Translates to: LFCCRDLIYIEI*KSNNNRTRHEL
Trigger: AAGCTCATGTCTAGTTCTGTTGTTGTTAGACTTGCAGATTTCAATATATATCAGGTCTCTACAGCAGAACAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020112.7
ENSMUST00000220375.2
CDS GCA 72 bp ATAGGTTGGGAGATGGAACTGATATATATTGAAATCTaGAAGTCTAACAACAACAGAACTAGACATGAGCTT +
Preference number: 6 (lower is better)
Translates to: IGWEMELIYIEI*KSNNNRTRHEL
Trigger: AAGCTCATGTCTAGTTCTGTTGTTGTTAGACTTGCAGATTTCAATATATATCAGTTCCATCTCCCAACCTAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218776.2