Pregenerated sensors for UFSP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031634Ensembl transcript IDs: ENSMUST00000034051.7, ENSMUST00000123307.8, ENSMUST00000130412.8, ENSMUST00000150943.2, ENSMUST00000209443.2, ENSMUST00000210081.2
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACTGGGGTGCCCACATTCTGGAAATGGTTGGCTAGTTCCCGTCCTTaGGAAGCCATTTCTGAACCTTGGTTGACAAACAGTATTTTCGAA | + |
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Preference number: 1 (lower is better) Translates to: TGVPTFWKWLASSRP*EAISEPWLTNSIFE Trigger: TTCGAAAATACTGTTTGTCAACCAAGGTTCAGAAATGGCTTCTCAAGGACGGGAACTAGCCAACCATTTCCAGAATGTGGGCACCCCAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130412.8 |
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| 3UTR GCA 90 bp | ATCAGTTGGTTTAGTACCATCTGTACTTCAATAGACCCAATCCACTaGCGTGATCCAACAAATGTTGCTGGCTTGTCGCCGGCATCAACT | + |
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Preference number: 1 (lower is better) Translates to: ISWFSTICTSIDPIH*RDPTNVAGLSPAST Trigger: AGTTGATGCCGGCGACAAGCCAGCAACATTTGTTGGATCACGGCAGTGGATTGGGTCTATTGAAGTACAGATGGTACTAAACCAACTGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130412.8 |
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| 3UTR CCA 90 bp | CACCTGTATAGTGTGGGTCTAGAATCAGGAATTTTATCTGCCCCGTaGTTTCATTCCATGCGACTCCTAGTATTGTGTGAGCCAATACCC | + |
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Preference number: 1 (lower is better) Translates to: HLYSVGLESGILSAP*FHSMRLLVLCEPIP Trigger: GGGTATTGGCTCACACAATACTAGGAGTCGCATGGAATGAAACCACGGGGCAGATAAAATTCCTGATTCTAGACCCACACTATACAGGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130412.8 |
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| 3UTR CCA 90 bp | GAACCTTGGTTGACAAACAGTATTTTCGAAGTCACACCAATCAGTTaGTTTAGTACCATCTGTACTTCAATAGACCCAATCCACTGCCGT | + |
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Preference number: 1 (lower is better) Translates to: EPWLTNSIFEVTPIS*FSTICTSIDPIHCR Trigger: ACGGCAGTGGATTGGGTCTATTGAAGTACAGATGGTACTAAACCAACTGATTGGTGTGACTTCGAAAATACTGTTTGTCAACCAAGGTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130412.8 |
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| 3UTR CCA 90 bp | ATAGGTGCCCTGGACCACACAAATCATACTACCCTCTATGTTAGGTaGACTCAGATAAGTATGTGGGTTTCTGATATAGCCATCTTTATA | + |
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Preference number: 1 (lower is better) Translates to: IGALDHTNHTTLYVR*TQISMWVSDIAIFI Trigger: TATAAAGATGGCTATATCAGAAACCCACATACTTATCTGAGTCCACCTAACATAGAGGGTAGTATGATTTGTGTGGTCCAGGGCACCTAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000130412.8 ENSMUST00000210081.2 |
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| 3UTR-3UTR TCA 90 bp | GCACTTTTCCCCATGATTCCTCTGGAGCAACAGACACAACGGCGTCAATTGGCATGTCATGAGGCAGATTaGAGAGATCATGTAACTCCT | + |
|
Preference number: 2 (lower is better) Translates to: ALFPMIPLEQQTQRRQLACHEAD*RDHVTP Trigger: AGGAGTTACATGATCTCTTCAATCTGCCTCATGACA...TGCCAATTGACGCCGTTGTGTCTGTTGCTCCAGAGGAATCATGGGGAAAAGTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000130412.8 ENSMUST00000210081.2 |
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| 3UTR-3UTR TCA 90 bp | TGGAGCAACAGACACAACGGCGTCAATTGGCAAGCTCATGTTAATGTAGTGGTGTGTCATGAGGCAGATTaGAGAGATCATGTAACTCCT | + |
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Preference number: 2 (lower is better) Translates to: WSNRHNGVNWQAHVNVVVCHEAD*RDHVTP Trigger: AGGAGTTACATGATCTCTTCAATCTGCCTCATGACA...CACCACTACATTAACATGAGCTTGCCAATTGACGCCGTTGTGTCTGTTGCTCCA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000130412.8 ENSMUST00000210081.2 |
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| 3UTR-3UTR CCA 90 bp | TTACAAGATTCTTTTTCCCTGGCAATTGAAAGTGCAGTGGCTCGGGGACCACAACACAACGGCGTCAATTaGCAAGCTCATGTTAATGTA | + |
|
Preference number: 2 (lower is better) Translates to: LQDSFSLAIESAVARGPQHNGVN*QAHVNV Trigger: TACATTAACATGAGCTTGCCAATTGACGCCGTTGTG...TTGTGGTCCCCGAGCCACTGCACTTTCAATTGCCAGGGAAAAAGAATCTTGTAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000130412.8 ENSMUST00000210081.2 |
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| 3UTR-3UTR TCA 90 bp | CAATTGAAAGTGCAGTGGCTCGGGGACCACAATAGACGTTCCTTTCATATATCTTCGATATCTCCAGCATaGGGTCTATATTTACTATCT | + |
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Preference number: 2 (lower is better) Translates to: QLKVQWLGDHNRRSFHISSISPA*GLYLLS Trigger: AGATAGTAAATATAGACCTCATGCTGGAGATATCGA...AGATATATGAAAGGAACGTCTATTGTGGTCCCCGAGCCACTGCACTTTCAATTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000130412.8 ENSMUST00000210081.2 |
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| 3UTR-3UTR TCA 90 bp | TTCATATATCTCAGGATGCATTTTTCCACATCAACTAGCTGCCTGAGAATTGCATCGATATCTCCAGCATaGGGTCTATATTTACTATCT | + |
|
Preference number: 2 (lower is better) Translates to: FIYLRMHFSTSTSCLRIASISPA*GLYLLS Trigger: AGATAGTAAATATAGACCTCATGCTGGAGATATCGA...TGCAATTCTCAGGCAGCTAGTTGATGTGGAAAAATGCATCCTGAGATATATGAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000130412.8 ENSMUST00000210081.2 |
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| 3UTR TCA 72 bp | GTTGCTGGCTTGTCGCCGGCATCAACTAGAGCCTGCTaGATTTCCCTGTGTGTGGGAATGGACCTCTCTGTG | + |
|
Preference number: 3 (lower is better) Translates to: VAGLSPASTRAC*ISLCVGMDLSV Trigger: CACAGAGAGGTCCATTCCCACACACAGGGAAATTCAGCAGGCTCTAGTTGATGCCGGCGACAAGCCAGCAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000130412.8 ENSMUST00000209443.2 |
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| 3UTR CCA 72 bp | CGACCATCACTGGGGTGCCCACATTCTGGAAATGGTTaGCTAGTTCCCGTCCTTGAGAAGCCATTTCTGAAC | + |
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Preference number: 3 (lower is better) Translates to: RPSLGCPHSGNG*LVPVLEKPFLN Trigger: GTTCAGAAATGGCTTCTCAAGGACGGGAACTAGCCAACCATTTCCAGAATGTGGGCACCCCAGTGATGGTCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130412.8 |
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| 3UTR-3UTR CAA 90 bp | TTGCGCACTTTTCCCCATGATTCCTCTGGAGCAACAGACACAACGGCGTCAATTCTTTTTCCCTGGCAATaGAAAGTGCAGTGGCTCGGG | + |
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Preference number: 3 (lower is better) Translates to: LRTFPHDSSGATDTTASILFPWQ*KVQWLG Trigger: CCCGAGCCACTGCACTTTCAATTGCCAGGGAAAAAG...AATTGACGCCGTTGTGTCTGTTGCTCCAGAGGAATCATGGGGAAAAGTGCGCAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000130412.8 ENSMUST00000210081.2 |
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| 3UTR TCA 72 bp | GGGTTACGGCTCCCAGAGGGGTCGATATCTCCAGCATaGGGTCTATATTTACTATCTGTTGCGTGTCAGTTA | + |
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Preference number: 3 (lower is better) Translates to: GLRLPEGSISPA*GLYLLSVACQL Trigger: TAACTGACACGCAACAGATAGTAAATATAGACCTCATGCTGGAGATATCGACCCCTCTGGGAGCCGTAACCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130412.8 |
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| 3UTR-3UTR CAA 90 bp | ATAGTATGCATCCTTGTTCCAAAAGTCTGGACTCTTCCATCCACACCAGCCCTTATGCGACTCCTAGTATaGTGTGAGCCAATACCCCTC | + |
|
Preference number: 3 (lower is better) Translates to: IVCILVPKVWTLPSTPALMRLLV*CEPIPL Trigger: GAGGGGTATTGGCTCACACAATACTAGGAGTCGCAT...AAGGGCTGGTGTGGATGGAAGAGTCCAGACTTTTGGAACAAGGATGCATACTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130412.8 |
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| 3UTR TCA 72 bp | CCCACATTCTGGAAATGGTTGGCTAGTTCCCGTCCTTaGGAAGCCATTTCTGAACCTTGGTTGACAAACAGT | + |
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Preference number: 3 (lower is better) Translates to: PTFWKWLASSRP*EAISEPWLTNS Trigger: ACTGTTTGTCAACCAAGGTTCAGAAATGGCTTCTCAAGGACGGGAACTAGCCAACCATTTCCAGAATGTGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130412.8 |
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| 3UTR GCA 72 bp | TTTAGTACCATCTGTACTTCAATAGACCCAATCCACTaGCGTGATCCAACAAATGTTGCTGGCTTGTCGCCG | + |
|
Preference number: 3 (lower is better) Translates to: FSTICTSIDPIH*RDPTNVAGLSP Trigger: CGGCGACAAGCCAGCAACATTTGTTGGATCACGGCAGTGGATTGGGTCTATTGAAGTACAGATGGTACTAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130412.8 |
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| 3UTR CCA 72 bp | AGTGTGGGTCTAGAATCAGGAATTTTATCTGCCCCGTaGTTTCATTCCATGCGACTCCTAGTATTGTGTGAG | + |
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Preference number: 3 (lower is better) Translates to: SVGLESGILSAP*FHSMRLLVLCE Trigger: CTCACACAATACTAGGAGTCGCATGGAATGAAACCACGGGGCAGATAAAATTCCTGATTCTAGACCCACACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130412.8 |
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| 3UTR TCA 72 bp | ATCTCAGGATGCATTTTTCCACATCAACTAGCTGCCTaGGAATTGCATCCACTAGAAGTTTGCGCACTTTTC | + |
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Preference number: 3 (lower is better) Translates to: ISGCIFPHQLAA*ELHPLEVCALF Trigger: GAAAAGTGCGCAAACTTCTAGTGGATGCAATTCTCAGGCAGCTAGTTGATGTGGAAAAATGCATCCTGAGAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000130412.8 ENSMUST00000210081.2 |
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| 3UTR CCA 72 bp | TACAAGATTCTTTTTCCCTGGCAATTGAAAGTGCAGTaGCTCGGGGACCACAATAGACGTTCCTTTCATATA | + |
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Preference number: 3 (lower is better) Translates to: YKILFPWQLKVQ*LGDHNRRSFHI Trigger: TATATGAAAGGAACGTCTATTGTGGTCCCCGAGCCACTGCACTTTCAATTGCCAGGGAAAAAGAATCTTGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000123307.8 ENSMUST00000130412.8 ENSMUST00000210081.2 |
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| 3UTR CCA 72 bp | CTGGACCACACAAATCATACTACCCTCTATGTTAGGTaGACTCAGATAAGTATGTGGGTTTCTGATATAGCC | + |
|
Preference number: 3 (lower is better) Translates to: LDHTNHTTLYVR*TQISMWVSDIA Trigger: GGCTATATCAGAAACCCACATACTTATCTGAGTCCACCTAACATAGAGGGTAGTATGATTTGTGTGGTCCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000130412.8 ENSMUST00000210081.2 |
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| 3UTR GCA 72 bp | CAATCCGATCTTGCATATAATGATGATAAGCATAGGTaGCCTGGACCACACAAATCATACTACCCTCTATGT | + |
|
Preference number: 3 (lower is better) Translates to: QSDLAYNDDKHR*PGPHKSYYPLC Trigger: ACATAGAGGGTAGTATGATTTGTGTGGTCCAGGGCACCTATGCTTATCATCATTATATGCAAGATCGGATTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000130412.8 ENSMUST00000210081.2 |
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| 3UTR CCA 72 bp | TTGACAAACAGTATTTTCGAAGTCACACCAATCAGTTaGTTTAGTACCATCTGTACTTCAATAGACCCAATC | + |
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Preference number: 3 (lower is better) Translates to: LTNSIFEVTPIS*FSTICTSIDPI Trigger: GATTGGGTCTATTGAAGTACAGATGGTACTAAACCAACTGATTGGTGTGACTTCGAAAATACTGTTTGTCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130412.8 |
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| CDS-3UTR TCA 90 bp | CTGGCTTGTCGCCGGCATCAACTAGAGCCTGCTGAATTTCCCTGTGTGTGGGAATTTTTCCCTGGCAATTaGAAGTGCAGTGGCTCGGGG | + |
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Preference number: 4 (lower is better) Translates to: LACRRHQLEPAEFPCVWEFFPGN*KCSGSG Trigger: CCCCGAGCCACTGCACTTTCAATTGCCAGGGAAAAA...TTCCCACACACAGGGAAATTCAGCAGGCTCTAGTTGATGCCGGCGACAAGCCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000209443.2 |
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| CDS-3UTR CCA 90 bp | CTGGCTTGTCGCCGGCATCAACTAGAGCCTGCTGAATTTCCCTGTGTGTGGGAACAATTGAAAGTGCAGTaGCTCGGGGACCACAATAGA | + |
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Preference number: 4 (lower is better) Translates to: LACRRHQLEPAEFPCVWEQLKVQ*LGDHNR Trigger: TCTATTGTGGTCCCCGAGCCACTGCACTTTCAATTG...TTCCCACACACAGGGAAATTCAGCAGGCTCTAGTTGATGCCGGCGACAAGCCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209443.2 |
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| CDS-3UTR TCA 90 bp | CGCCGGCATCAACTAGAGCCTGCTGAATTTCCCTGTGTGTGGGAATGGACCTCTCATCAACTAGCTGCCTaGGAATTGCATCCACTAGAA | + |
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Preference number: 4 (lower is better) Translates to: RRHQLEPAEFPCVWEWTSHQLAA*ELHPLE Trigger: TTCTAGTGGATGCAATTCTCAGGCAGCTAGTTGATG...AGAGGTCCATTCCCACACACAGGGAAATTCAGCAGGCTCTAGTTGATGCCGGCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209443.2 |
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| CDS-3UTR TCA 90 bp | AGCCTGCTGAATTTCCCTGTGTGTGGGAATGGACCTCTCTGTGTAACCCTGATGTGTCATGAGGCAGATTaGAGAGATCATGTAACTCCT | + |
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Preference number: 4 (lower is better) Translates to: SLLNFPVCGNGPLCVTLMCHEAD*RDHVTP Trigger: AGGAGTTACATGATCTCTTCAATCTGCCTCATGACA...CATCAGGGTTACACAGAGAGGTCCATTCCCACACACAGGGAAATTCAGCAGGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209443.2 |
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| CDS-3UTR CCA 90 bp | GCTTGTCGCCGGCATCAACTAGAGCCTGCTGAATTTCCCTGTGTGTGGGAATGGACTCAGATAAGTATGTaGGTTTCTGATATAGCCATC | + |
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Preference number: 4 (lower is better) Translates to: ACRRHQLEPAEFPCVWEWTQISM*VSDIAI Trigger: GATGGCTATATCAGAAACCCACATACTTATCTGAGT...CCATTCCCACACACAGGGAAATTCAGCAGGCTCTAGTTGATGCCGGCGACAAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209443.2 |
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| CDS-3UTR CCA 90 bp | AGCCTGCTGAATTTCCCTGTGTGTGGGAATGGACCTCTCTGTGTAACCCTGATGACCCTCTATGTTAGGTaGACTCAGATAAGTATGTGG | + |
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Preference number: 4 (lower is better) Translates to: SLLNFPVCGNGPLCVTLMTLYVR*TQISMW Trigger: CCACATACTTATCTGAGTCCACCTAACATAGAGGGT...CATCAGGGTTACACAGAGAGGTCCATTCCCACACACAGGGAAATTCAGCAGGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209443.2 |
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| CDS-3UTR GCA 90 bp | CAAATGTTGCTGGCTTGTCGCCGGCATCAACTAGAGCCTGCTGAATTTCCCTGTCAACACCTGTCTCAGTaGGTTCTTGATAAACATTTC | + |
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Preference number: 4 (lower is better) Translates to: QMLLACRRHQLEPAEFPCQHLSQ*VLDKHF Trigger: GAAATGTTTATCAAGAACGCACTGAGACAGGTGTTG...ACAGGGAAATTCAGCAGGCTCTAGTTGATGCCGGCGACAAGCCAGCAACATTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000130412.8 ENSMUST00000209443.2 |
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| 3UTR CAA 72 bp | TCAACTAGCTGCCTGAGAATTGCATCCACTAGAAGTTaGCGCACTTTTCCCCATGATTCCTCTGGAGCAACA | + |
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Preference number: 4 (lower is better) Translates to: STSCLRIASTRS*RTFPHDSSGAT Trigger: TGTTGCTCCAGAGGAATCATGGGGAAAAGTGCGCAAACTTCTAGTGGATGCAATTCTCAGGCAGCTAGTTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000130412.8 ENSMUST00000210081.2 |
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| CDS-3UTR TCA 90 bp | CAGTGGCTCGGGGACCACAATAGACGTTCCTTTCATATATCTCAGGATGCATTTTTTGTATCCTCCTCTTaGTCAAATAGGCAGAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: QWLGDHNRRSFHISQDAFFVSSS*SNRQSC Trigger: ACAGCTCTGCCTATTTGATCAAGAGGAGGATACAAA...AAATGCATCCTGAGATATATGAAAGGAACGTCTATTGTGGTCCCCGAGCCACTG 44% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000210081.2 |
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| CDS-3UTR GCA 90 bp | CAGTGGCTCGGGGACCACAATAGACGTTCCTTTCATATATCTCAGGATGCATTTCAACACCTGTCTCAGTaGGTTCTTGATAAACATTTC | + |
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Preference number: 4 (lower is better) Translates to: QWLGDHNRRSFHISQDAFQHLSQ*VLDKHF Trigger: GAAATGTTTATCAAGAACGCACTGAGACAGGTGTTG...AAATGCATCCTGAGATATATGAAAGGAACGTCTATTGTGGTCCCCGAGCCACTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000123307.8 ENSMUST00000130412.8 ENSMUST00000210081.2 |
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| CDS-3UTR GCA 90 bp | ATAATGATGATAAGCATAGGTGCCCTGGACCACACAAATCATACTACCCTCTATCAACACCTGTCTCAGTaGGTTCTTGATAAACATTTC | + |
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Preference number: 4 (lower is better) Translates to: IMMISIGALDHTNHTTLYQHLSQ*VLDKHF Trigger: GAAATGTTTATCAAGAACGCACTGAGACAGGTGTTG...ATAGAGGGTAGTATGATTTGTGTGGTCCAGGGCACCTATGCTTATCATCATTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000130412.8 ENSMUST00000210081.2 |
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| CDS-3UTR GCA 90 bp | AATCATACTACCCTCTATGTTAGGTGGACTCAGATAAGTATGTGGGTTTCTGATCAACACCTGTCTCAGTaGGTTCTTGATAAACATTTC | + |
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Preference number: 4 (lower is better) Translates to: NHTTLYVRWTQISMWVSDQHLSQ*VLDKHF Trigger: GAAATGTTTATCAAGAACGCACTGAGACAGGTGTTG...ATCAGAAACCCACATACTTATCTGAGTCCACCTAACATAGAGGGTAGTATGATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000130412.8 ENSMUST00000210081.2 |
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| CDS GCA 90 bp | CACTACGTTCTTACAGGCAGAGCTGTCAGTCAGCTCCCCCGTGTTTaGGTCGCTGTTCGGCCACAGGTACACGGAGCTGTTGCAAACTCT | + |
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Preference number: 5 (lower is better) Translates to: HYVLTGRAVSQLPRV*VAVRPQVHGAVANS Trigger: AGAGTTTGCAACAGCTCCGTGTACCTGTGGCCGAACAGCGACGCAAACACGGGGGAGCTGACTGACAGCTCTGCCTGTAAGAACGTAGTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000034051.7 ENSMUST00000123307.8 ENSMUST00000130412.8 ENSMUST00000209443.2 |
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| CDS-3UTR CAA 90 bp | CTGAATTTCCCTGTGTGTGGGAATGGACCTCTCTGTGTAACCCTGATGTCTGAACTTTTTCCCTGGCAATaGAAAGTGCAGTGGCTCGGG | + |
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Preference number: 5 (lower is better) Translates to: LNFPVCGNGPLCVTLMSELFPWQ*KVQWLG Trigger: CCCGAGCCACTGCACTTTCAATTGCCAGGGAAAAAG...TTCAGACATCAGGGTTACACAGAGAGGTCCATTCCCACACACAGGGAAATTCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000209443.2 |
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| CDS TCA 90 bp | TCAACTAGCTGCCTGAGAATTGCATCCACTAGAAGTTTGCGCACTTaGATGAAGCGCACTACGTTCTTACAGGCAGAGCTGTCAGTCAGC | + |
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Preference number: 5 (lower is better) Translates to: STSCLRIASTRSLRT*MKRTTFLQAELSVS Trigger: GCTGACTGACAGCTCTGCCTGTAAGAACGTAGTGCGCTTCATTCAAGTGCGCAAACTTCTAGTGGATGCAATTCTCAGGCAGCTAGTTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209443.2 |
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| CDS TCA 90 bp | TGTCTCAGTGCGTTCTTGATAAACATTTCTTTAGGTGGTGCTAGCTaGAAAGCCAGATCGAAGCCGCCTCTTATTCTGAAGAGTATATCC | + |
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Preference number: 5 (lower is better) Translates to: CLSAFLINISLGGAS*KARSKPPLILKSIS Trigger: GGATATACTCTTCAGAATAAGAGGCGGCTTCGATCTGGCTTTTCAGCTAGCACCACCTAAAGAAATGTTTATCAAGAACGCACTGAGACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000034051.7 ENSMUST00000123307.8 ENSMUST00000130412.8 ENSMUST00000150943.2 ENSMUST00000209443.2 ENSMUST00000210081.2 |
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| CDS-3UTR CAA 90 bp | CTCGGGGACCACAATAGACGTTCCTTTCATATATCTCAGGATGCATTTTTCCACCTTTGTATCCTCCTCTaGATCAAATTGAATGAAGCG | + |
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Preference number: 5 (lower is better) Translates to: LGDHNRRSFHISQDAFFHLCILL*IKLNEA Trigger: CGCTTCATTCAATTTGATCAAGAGGAGGATACAAAG...GTGGAAAAATGCATCCTGAGATATATGAAAGGAACGTCTATTGTGGTCCCCGAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000123307.8 |
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| CDS GCA 72 bp | CTTACAGGCAGAGCTGTCAGTCAGCTCCCCCGTGTTTaGGTCGCTGTTCGGCCACAGGTACACGGAGCTGTT | + |
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Preference number: 6 (lower is better) Translates to: LTGRAVSQLPRV*VAVRPQVHGAV Trigger: AACAGCTCCGTGTACCTGTGGCCGAACAGCGACGCAAACACGGGGGAGCTGACTGACAGCTCTGCCTGTAAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000034051.7 ENSMUST00000123307.8 ENSMUST00000130412.8 ENSMUST00000209443.2 |
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| CDS CAA 72 bp | TCTTACAGGCAGAGCTGTCAGTCAGCTCCCCCGTGTTaGCGTCGCTGTTCGGCCACAGGTACACGGAGCTGT | + |
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Preference number: 6 (lower is better) Translates to: SYRQSCQSAPPC*RRCSATGTRSC Trigger: ACAGCTCCGTGTACCTGTGGCCGAACAGCGACGCAAACACGGGGGAGCTGACTGACAGCTCTGCCTGTAAGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000034051.7 ENSMUST00000123307.8 ENSMUST00000130412.8 ENSMUST00000209443.2 |
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| CDS CAA 90 bp | GCACTACGTTCTTACAGGCAGAGCTGTCAGTCAGCTCCCCCGTGTTaGCGTCGCTGTTCGGCCACAGGTACACGGAGCTGTTGCAAACTC | + |
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Preference number: 6 (lower is better) Translates to: ALRSYRQSCQSAPPC*RRCSATGTRSCCKL Trigger: GAGTTTGCAACAGCTCCGTGTACCTGTGGCCGAACAGCGACGCAAACACGGGGGAGCTGACTGACAGCTCTGCCTGTAAGAACGTAGTGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000034051.7 ENSMUST00000123307.8 ENSMUST00000130412.8 ENSMUST00000209443.2 |
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| CDS GCA 72 bp | CAAATAGGCAGAGCTGTCAGTCAGCTCCCCCGTGTTTaGGTCGCTGTTCGGCCACAGGTACACGGAGCTGTT | + |
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Preference number: 6 (lower is better) Translates to: QIGRAVSQLPRV*VAVRPQVHGAV Trigger: AACAGCTCCGTGTACCTGTGGCCGAACAGCGACGCAAACACGGGGGAGCTGACTGACAGCTCTGCCTATTTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000210081.2 |
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| CDS CAA 72 bp | TCAAATAGGCAGAGCTGTCAGTCAGCTCCCCCGTGTTaGCGTCGCTGTTCGGCCACAGGTACACGGAGCTGT | + |
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Preference number: 6 (lower is better) Translates to: SNRQSCQSAPPC*RRCSATGTRSC Trigger: ACAGCTCCGTGTACCTGTGGCCGAACAGCGACGCAAACACGGGGGAGCTGACTGACAGCTCTGCCTATTTGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000210081.2 |
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| CDS TCA 72 bp | CACGGAGCTGTTGCAAACTCTGAGCACAAGAGCATCTaGGGAGAGCTTGGTAGTCAGGTCGCTCAACACCTG | + |
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Preference number: 6 (lower is better) Translates to: HGAVANSEHKSI*GELGSQVAQHL Trigger: CAGGTGTTGAGCGACCTGACTACCAAGCTCTCCTCAGATGCTCTTGTGCTCAGAGTTTGCAACAGCTCCGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000034051.7 ENSMUST00000123307.8 ENSMUST00000130412.8 ENSMUST00000209443.2 ENSMUST00000210081.2 |
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| CDS CAA 72 bp | TTGCAAACTCTGAGCACAAGAGCATCTGAGGAGAGCTaGGTAGTCAGGTCGCTCAACACCTGTCTCAGTGCG | + |
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Preference number: 6 (lower is better) Translates to: LQTLSTRASEES*VVRSLNTCLSA Trigger: CGCACTGAGACAGGTGTTGAGCGACCTGACTACCAAGCTCTCCTCAGATGCTCTTGTGCTCAGAGTTTGCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000034051.7 ENSMUST00000123307.8 ENSMUST00000130412.8 ENSMUST00000209443.2 ENSMUST00000210081.2 |
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| CDS TCA 72 bp | TGCCTGAGAATTGCATCCACTAGAAGTTTGCGCACTTaGATGAAGCGCACTACGTTCTTACAGGCAGAGCTG | + |
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Preference number: 6 (lower is better) Translates to: CLRIASTRSLRT*MKRTTFLQAEL Trigger: CAGCTCTGCCTGTAAGAACGTAGTGCGCTTCATTCAAGTGCGCAAACTTCTAGTGGATGCAATTCTCAGGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209443.2 |
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| CDS TCA 72 bp | GCGTTCTTGATAAACATTTCTTTAGGTGGTGCTAGCTaGAAAGCCAGATCGAAGCCGCCTCTTATTCTGAAG | + |
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Preference number: 6 (lower is better) Translates to: AFLINISLGGAS*KARSKPPLILK Trigger: CTTCAGAATAAGAGGCGGCTTCGATCTGGCTTTTCAGCTAGCACCACCTAAAGAAATGTTTATCAAGAACGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000034051.7 ENSMUST00000123307.8 ENSMUST00000130412.8 ENSMUST00000150943.2 ENSMUST00000209443.2 ENSMUST00000210081.2 |
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| CDS TCA 72 bp | ATTTTCGCTTTGTATCCTCCTCTTGATCAAATTGAATaGAGCGCACTACGTTCTTACAGGCAGAGCTGTCAG | + |
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Preference number: 6 (lower is better) Translates to: IFALYPPLDQIE*SALRSYRQSCQ Trigger: CTGACAGCTCTGCCTGTAAGAACGTAGTGCGCTTCATTCAATTTGATCAAGAGGAGGATACAAAGCGAAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034051.7 ENSMUST00000123307.8 |
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| CDS TCA 72 bp | ATCTCAGGATGCATTTTTCCACATCAACTAGCTGCCTaGGAATTGCATCCACTAGAAGTTTGCGCACTTGAA | + |
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Preference number: 6 (lower is better) Translates to: ISGCIFPHQLAA*ELHPLEVCALE Trigger: TTCAAGTGCGCAAACTTCTAGTGGATGCAATTCTCAGGCAGCTAGTTGATGTGGAAAAATGCATCCTGAGAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000209443.2 |
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| CDS CAA 72 bp | AATGAATTTTCGCTTTGTATCCTCCTCTTGATCAAATaGAATGAAGCGCACTACGTTCTTACAGGCAGAGCT | + |
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Preference number: 6 (lower is better) Translates to: NEFSLCILLLIK*NEAHYVLTGRA Trigger: AGCTCTGCCTGTAAGAACGTAGTGCGCTTCATTCAATTTGATCAAGAGGAGGATACAAAGCGAAAATTCATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034051.7 ENSMUST00000123307.8 |
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| CDS GCA 72 bp | CAATCCGATCTTGCATATAATGATGATAAGCATAGGTaGCTAATTAGACTCACCATACTACCCTCTATGTTA | + |
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Preference number: 6 (lower is better) Translates to: QSDLAYNDDKHR*LIRLTILPSML Trigger: TAACATAGAGGGTAGTATGGTGAGTCTAATTAGGCACCTATGCTTATCATCATTATATGCAAGATCGGATTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209443.2 |
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