Pregenerated sensors for UFM1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027746Ensembl transcript IDs: ENSMUST00000122330.2, ENSMUST00000146598.8
Found 80 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTTAAAGCACAGTCCATTTGTCTCAGAGGTACTCTCTTCTCCCGGTaGGGCAGCAGTCACCACAGTGTGACCTGTGGTGTCGTACCCTCC | + |
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Preference number: 1 (lower is better) Translates to: FKAQSICLRGTLFSR*GSSHHSVTCGVVPS Trigger: GGAGGGTACGACACCACAGGTCACACTGTGGTGACTGCTGCCTCACCGGGAGAAGAGAGTACCTCTGAGACAAATGGACTGTGCTTTAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR TCA 90 bp | ACTTTGTGTTTAGAGGCAGTCTTGCTGCACAGCCCAGGCTCCCCTTaGTCTTGCAGCCCTACTGCCGGGATTATATATGTGTGCCCTAAG | + |
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Preference number: 1 (lower is better) Translates to: TLCLEAVLLHSPGSP*SCSPTAGIIYVCPK Trigger: CTTAGGGCACACATATATAATCCCGGCAGTAGGGCTGCAAGATCAAGGGGAGCCTGGGCTGTGCAGCAAGACTGCCTCTAAACACAAAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR CCA 90 bp | AGTCCTAATTTGGCTTGGAAGCAGAGGTTTCCCATTCTCAGGACATaGGGTTCCCGGACTCACAGATGGGGAAGTGAAGGTAGGAACGTG | + |
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Preference number: 1 (lower is better) Translates to: SPNLAWKQRFPILRT*GSRTHRWGSEGRNV Trigger: CACGTTCCTACCTTCACTTCCCCATCTGTGAGTCCGGGAACCCCATGTCCTGAGAATGGGAAACCTCTGCTTCCAAGCCAAATTAGGACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR TCA 90 bp | GGAGGGGACTGGCTCACATCTGGGTGTCTGAGTAAGGTTAGAGGATaGCTCTGGGGAGTTGGTAATCTCCTTCATTCTGAAGAAGAAGAG | + |
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Preference number: 1 (lower is better) Translates to: GGDWLTSGCLSKVRG*LWGVGNLLHSEEEE Trigger: CTCTTCTTCTTCAGAATGAAGGAGATTACCAACTCCCCAGAGTCATCCTCTAACCTTACTCAGACACCCAGATGTGAGCCAGTCCCCTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR GCA 90 bp | TCCTCCTCACTTCCTCTGCTCTTCTGGGAAGGGCCTGGCTATCTTTaGATCCCTGGTTCCTTATCCACTGTGACTATATTAACAGCTTCT | + |
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Preference number: 1 (lower is better) Translates to: SSSLPLLFWEGPGYL*IPGSLSTVTILTAS Trigger: AGAAGCTGTTAATATAGTCACAGTGGATAAGGAACCAGGGATGCAAAGATAGCCAGGCCCTTCCCAGAAGAGCAGAGGAAGTGAGGAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR CCA 90 bp | CATGGAACTGCAGTTACAGATGGTTGTGAGCCACTATGTGGGTTTTaGGGACAAAACCTTGGTCTTCTGCAAGATCAGGAGGCACTCTTA | + |
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Preference number: 1 (lower is better) Translates to: HGTAVTDGCEPLCGF*GQNLGLLQDQEALL Trigger: TAAGAGTGCCTCCTGATCTTGCAGAAGACCAAGGTTTTGTCCCCAAAACCCACATAGTGGCTCACAACCATCTGTAACTGCAGTTCCATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR TCA 90 bp | ACAAAACCTTGGTCTTCTGCAAGATCAGGAGGCACTCTTAACCACTaGGCCATCTGCACAGCCCTCGTTCAACAGATTGTAATGACAACT | + |
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Preference number: 1 (lower is better) Translates to: TKPWSSARSGGTLNH*AICTALVQQIVMTT Trigger: AGTTGTCATTACAATCTGTTGAACGAGGGCTGTGCAGATGGCTCAGTGGTTAAGAGTGCCTCCTGATCTTGCAGAAGACCAAGGTTTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR CCA 90 bp | GGTCCCAGGGACGGAACTCAGGTTTTTGTAAGGGAACACCTTTATTaGCTGCACCAACCGCTTTGGACTTATTTATATACATCTTCTTCA | + |
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Preference number: 1 (lower is better) Translates to: GPRDGTQVFVREHLY*LHQPLWTYLYTSSS Trigger: TGAAGAAGATGTATATAAATAAGTCCAAAGCGGTTGGTGCAGCCAATAAAGGTGTTCCCTTACAAAAACCTGAGTTCCGTCCCTGGGACC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR TCA 90 bp | CACTCTTTTTGGCACTTTCTGGATGCTAACCATGAAATCCAGACTTaGAGCAATTCACTATCTCAAAATCAGTACCTGGTAACACAGTCT | + |
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Preference number: 1 (lower is better) Translates to: HSFWHFLDANHEIQT*SNSLSQNQYLVTQS Trigger: AGACTGTGTTACCAGGTACTGATTTTGAGATAGTGAATTGCTTCAAGTCTGGATTTCATGGTTAGCATCCAGAAAGTGCCAAAAAGAGTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000122330.2 |
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| 3UTR TCA 90 bp | AACCAAGTTTTGGCCATATTTATCTCAGTCACTGTTCTATTGCTGTaGACTGACACCATGACTAAACCAACTCTTAAAGGAGAAAGCATT | + |
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Preference number: 1 (lower is better) Translates to: NQVLAIFISVTVLLL*TDTMTKPTLKGESI Trigger: AATGCTTTCTCCTTTAAGAGTTGGTTTAGTCATGGTGTCAGTTCACAGCAATAGAACAGTGACTGAGATAAATATGGCCAAAACTTGGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR-3UTR TCA 90 bp | CGGCTTCGTTCTCTGACCTCTGCCTTTGGACACTGCCAGCCTCCTGTTCCTCCTACTCTCTTCTCCCGGTaGGGCAGCAGTCACCACAGT | + |
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Preference number: 2 (lower is better) Translates to: RLRSLTSAFGHCQPPVPPTLFSR*GSSHHS Trigger: ACTGTGGTGACTGCTGCCTCACCGGGAGAAGAGAGT...AGGAGGAACAGGAGGCTGGCAGTGTCCAAAGGCAGAGGTCAGAGAACGAAGCCG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR-3UTR TCA 90 bp | CCCATTCTCAGGACATGGGGTTCCCGGACTCACAGATGGGGAAGTGAAGGTAGGGACACCACCCAGGGCTaGGACCACCAAAGGTTCTCC | + |
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Preference number: 2 (lower is better) Translates to: PILRTWGSRTHRWGSEGRDTTQG*DHQRFS Trigger: GGAGAACCTTTGGTGGTCTCAGCCCTGGGTGGTGTC...CCTACCTTCACTTCCCCATCTGTGAGTCCGGGAACCCCATGTCCTGAGAATGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR-3UTR GCA 90 bp | CCCATTCTCAGGACATGGGGTTCCCGGACTCACAGATGGGGAAGTGAAGGTAGGTCTGCCTTTGGACACTaGCAGCCTCCTGTTCCTCCT | + |
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Preference number: 2 (lower is better) Translates to: PILRTWGSRTHRWGSEGRSAFGH*QPPVPP Trigger: AGGAGGAACAGGAGGCTGGCAGTGTCCAAAGGCAGA...CCTACCTTCACTTCCCCATCTGTGAGTCCGGGAACCCCATGTCCTGAGAATGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR-3UTR CCA 90 bp | CCCATTCTCAGGACATGGGGTTCCCGGACTCACAGATGGGGAAGTGAAGGTAGGCTCGAAGGCAAAGCCTaGCTCAAAAGCCAAGGCACA | + |
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Preference number: 2 (lower is better) Translates to: PILRTWGSRTHRWGSEGRLEGKA*LKSQGT Trigger: TGTGCCTTGGCTTTTGAGCCAGGCTTTGCCTTCGAG...CCTACCTTCACTTCCCCATCTGTGAGTCCGGGAACCCCATGTCCTGAGAATGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR-3UTR CCA 90 bp | GGTTTCCCATTCTCAGGACATGGGGTTCCCGGACTCACAGATGGGGAAGTGAAGTTCCCAACTTCATTCTaGACACCACCCAGGGCTGAG | + |
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Preference number: 2 (lower is better) Translates to: GFPFSGHGVPGLTDGEVKFPTSF*TPPRAE Trigger: CTCAGCCCTGGGTGGTGTCCAGAATGAAGTTGGGAA...CTTCACTTCCCCATCTGTGAGTCCGGGAACCCCATGTCCTGAGAATGGGAAACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR-3UTR TCA 90 bp | GTAGTTCTAATTTCCCAACTTCATTCTGGACACCACCCAGGGCTGAGACCACCATGCGGCTTCGTTCTCTaGCCTCTGCCTTTGGACACT | + |
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Preference number: 2 (lower is better) Translates to: VVLISQLHSGHHPGLRPPCGFVL*PLPLDT Trigger: AGTGTCCAAAGGCAGAGGTCAGAGAACGAAGCCGCA...TGGTGGTCTCAGCCCTGGGTGGTGTCCAGAATGAAGTTGGGAAATTAGAACTAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR-3UTR TCA 90 bp | CAGGAGGCACTCTTAACCACTGAGCCATCTGCACAGCCCTCGTTCAACAGATTGGTGTATGTCACAGTGTaGATGTGGAGGTCACTTCTC | + |
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Preference number: 2 (lower is better) Translates to: QEALLTTEPSAQPSFNRLVYVTV*MWRSLL Trigger: GAGAAGTGACCTCCACATTCACACTGTGACATACAC...CAATCTGTTGAACGAGGGCTGTGCAGATGGCTCAGTGGTTAAGAGTGCCTCCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR-3UTR CCA 90 bp | CATGCAGGTCCCAGGGACGGAACTCAGGTTTTTGTAAGGGAACACCTTTATTGGCTTCCTCTGCTCTTCTaGGAAGGGCCTGGCTATCTT | + |
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Preference number: 2 (lower is better) Translates to: HAGPRDGTQVFVREHLYWLPLLF*EGPGYL Trigger: AAGATAGCCAGGCCCTTCCCAGAAGAGCAGAGGAAG...CCAATAAAGGTGTTCCCTTACAAAAACCTGAGTTCCGTCCCTGGGACCTGCATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR-3UTR CCA 90 bp | CCCATTCTCAGGACATGGGGTTCCCGGACTCACAGATGGGGAAGTGAAGGTAGGAACATGTGCCAGACATaGACTTTCTGTGTAAAGGCA | + |
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Preference number: 2 (lower is better) Translates to: PILRTWGSRTHRWGSEGRNMCQT*TFCVKA Trigger: TGCCTTTACACAGAAAGTCCATGTCTGGCACATGTT...CCTACCTTCACTTCCCCATCTGTGAGTCCGGGAACCCCATGTCCTGAGAATGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR-3UTR GCA 90 bp | CAGGAGGCACTCTTAACCACTGAGCCATCTGCACAGCCCTCGTTCAACAGATTGAAGGACACCCACCAATaGTTCAGATCATCTCTGCAA | + |
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Preference number: 2 (lower is better) Translates to: QEALLTTEPSAQPSFNRLKDTHQ*FRSSLQ Trigger: TTGCAGAGATGATCTGAAGCATTGGTGGGTGTCCTT...CAATCTGTTGAACGAGGGCTGTGCAGATGGCTCAGTGGTTAAGAGTGCCTCCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR-3UTR GCA 90 bp | CAGAAAGTGGACACAAAGATTTCTCCAGATTATATGGAGCCTCGAAGGCAAAGCCCTCCTCACTTCCTCTaGTCTTCTGGGAAGGGCCTG | + |
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Preference number: 2 (lower is better) Translates to: QKVDTKISPDYMEPRRQSPPHFL*SSGKGL Trigger: CAGGCCCTTCCCAGAAGAGCAGAGGAAGTGAGGAGG...GCTTTGCCTTCGAGGCTCCATATAATCTGGAGAAATCTTTGTGTCCACTTTCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR-3UTR CCA 90 bp | TTTAAAGGTTTGATCCATCATCATGGTGGGAAACATGGTGGTAAGCAGGCAGGCCTTCTGGGAAGGGCCTaGCTATCTTTGCATCCCTGG | + |
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Preference number: 2 (lower is better) Translates to: FKGLIHHHGGKHGGKQAGLLGRA*LSLHPW Trigger: CCAGGGATGCAAAGATAGCCAGGCCCTTCCCAGAAG...GCCTGCCTGCTTACCACCATGTTTCCCACCATGATGATGGATCAAACCTTTAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR CAA 90 bp | TTCCTCCTCACTTCCTCTGCTCTTCTGGGAAGGGCCTGGCTATCTTaGCATCCCTGGTTCCTTATCCACTGTGACTATATTAACAGCTTC | + |
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Preference number: 2 (lower is better) Translates to: FLLTSSALLGRAWLS*HPWFLIHCDYINSF Trigger: GAAGCTGTTAATATAGTCACAGTGGATAAGGAACCAGGGATGCAAAGATAGCCAGGCCCTTCCCAGAAGAGCAGAGGAAGTGAGGAGGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR-3UTR CCA 90 bp | GCCTGTGTAGTAAAACTCCAGACAGGTACTGTCACTGTTCTTGTACTTTGTGTTATGGTGGGAGGGGACTaGCTCACATCTGGGTGTCTG | + |
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Preference number: 2 (lower is better) Translates to: ACVVKLQTGTVTVLVLCVMVGGD*LTSGCL Trigger: CAGACACCCAGATGTGAGCCAGTCCCCTCCCACCAT...AACACAAAGTACAAGAACAGTGACAGTACCTGTCTGGAGTTTTACTACACAGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR-3UTR CCA 90 bp | TCACACAGCTCCCCTATGAGAGCAGCCTTTGAGATGTCAGTGGCTGTAGCTGTTCTTTTTGGCACTTTCTaGATGCTAACCATGAAATCC | + |
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Preference number: 2 (lower is better) Translates to: SHSSPMRAAFEMSVAVAVLFGTF*MLTMKS Trigger: GGATTTCATGGTTAGCATCCAGAAAGTGCCAAAAAG...AACAGCTACAGCCACTGACATCTCAAAGGCTGCTCTCATAGGGGAGCTGTGTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000122330.2 |
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| 3UTR-3UTR CCA 90 bp | CATTTGTCTCAGAGGTACTCTCTTCTCCCGGTGAGGCAGCAGTCACCACAGTGTTGTTCTGTTGATTCTTaGTGCTTTCATTGTATGGTG | + |
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Preference number: 2 (lower is better) Translates to: HLSQRYSLLPVRQQSPQCCSVDS*CFHCMV Trigger: CACCATACAATGAAAGCACCAAGAATCAACAGAACA...ACACTGTGGTGACTGCTGCCTCACCGGGAGAAGAGAGTACCTCTGAGACAAATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR-3UTR CCA 90 bp | CAGAAAGTGGACACAAAGATTTCTCCAGATTATATGGAGCCTCGAAGGCAAAGCCTAAGGGTGCTTCTGTaGTACTGTCAGTTCCCACCA | + |
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Preference number: 2 (lower is better) Translates to: QKVDTKISPDYMEPRRQSLRVLL*YCQFPP Trigger: TGGTGGGAACTGACAGTACCACAGAAGCACCCTTAG...GCTTTGCCTTCGAGGCTCCATATAATCTGGAGAAATCTTTGTGTCCACTTTCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR-3UTR GCA 90 bp | GCCTGTGTAGTAAAACTCCAGACAGGTACTGTCACTGTTCTTGTACTTTGTGTTTTGATGCCTGTGCATTaGTTTCTGACCCTGTGCCCA | + |
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Preference number: 2 (lower is better) Translates to: ACVVKLQTGTVTVLVLCVLMPVH*FLTLCP Trigger: TGGGCACAGGGTCAGAAAGCAATGCACAGGCATCAA...AACACAAAGTACAAGAACAGTGACAGTACCTGTCTGGAGTTTTACTACACAGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR CAA 90 bp | AGGTCCCAGGGACGGAACTCAGGTTTTTGTAAGGGAACACCTTTATaGGCTGCACCAACCGCTTTGGACTTATTTATATACATCTTCTTC | + |
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Preference number: 2 (lower is better) Translates to: RSQGRNSGFCKGTPL*AAPTALDLFIYIFF Trigger: GAAGAAGATGTATATAAATAAGTCCAAAGCGGTTGGTGCAGCCAATAAAGGTGTTCCCTTACAAAAACCTGAGTTCCGTCCCTGGGACCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR CAA 90 bp | AGCCTTGGGTACAGTAAGGACCTAGGATTGCTCCTTTACAGTATATaGATGCTTCCAATCTACAAATGTTTGCCCAAATGTCTCCAGGGC | + |
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Preference number: 2 (lower is better) Translates to: SLGYSKDLGLLLYSI*MLPIYKCLPKCLQG Trigger: GCCCTGGAGACATTTGGGCAAACATTTGTAGATTGGAAGCATCAATATACTGTAAAGGAGCAATCCTAGGTCCTTACTGTACCCAAGGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR-3UTR TCA 90 bp | TTTAAAGGTTTGATCCATCATCATGGTGGGAAACATGGTGGTAAGCAGGCAGGCACATTTCCAGCATGCTaGGGAACTTGTTTCACCTTT | + |
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Preference number: 2 (lower is better) Translates to: FKGLIHHHGGKHGGKQAGTFPAC*GTCFTF Trigger: AAAGGTGAAACAAGTTCCTCAGCATGCTGGAAATGT...GCCTGCCTGCTTACCACCATGTTTCCCACCATGATGATGGATCAAACCTTTAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR-3UTR CCA 90 bp | CATGCAGGTCCCAGGGACGGAACTCAGGTTTTTGTAAGGGAACACCTTTATTGGCTGCACCAACCGCTTTaGACTTATTTATATACATCT | + |
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Preference number: 2 (lower is better) Translates to: HAGPRDGTQVFVREHLYWLHQPL*TYLYTS Trigger: AGATGTATATAAATAAGTCCAAAGCGGTTGGTGCAG...CCAATAAAGGTGTTCCCTTACAAAAACCTGAGTTCCGTCCCTGGGACCTGCATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR CAA 90 bp | GGCACTAGACAGAAACATAAAAACCCAGCAAACATGAGGTGTGTATaGCTACATAATTCTGAACCCCAGAATGTGCTCCACAAACCTGTG | + |
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Preference number: 2 (lower is better) Translates to: GTRQKHKNPANMRCV*LHNSEPQNVLHKPV Trigger: CACAGGTTTGTGGAGCACATTCTGGGGTTCAGAATTATGTAGCAATACACACCTCATGTTTGCTGGGTTTTTATGTTTCTGTCTAGTGCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR-3UTR TCA 90 bp | GCCCAAATGTCTCCAGGGCTAAGACATATAGTAGCTCAAATGTTCTTACATTTGGATTCCAGGGTACTTTaGCCTTCACCTGTAATCCTG | + |
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Preference number: 2 (lower is better) Translates to: AQMSPGLRHIVAQMFLHLDSRVL*PSPVIL Trigger: CAGGATTACAGGTGAAGGTCAAAGTACCCTGGAATC...CAAATGTAAGAACATTTGAGCTACTATATGTCTTAGCCCTGGAGACATTTGGGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR-3UTR GCA 90 bp | GTATTCAAAGGGGTGTCATTTATTACTATACATTTCCAGCATGCTGAGGAACTTGGGCCTGGCTATCTTTaGATCCCTGGTTCCTTATCC | + |
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Preference number: 2 (lower is better) Translates to: VFKGVSFITIHFQHAEELGPGYL*IPGSLS Trigger: GGATAAGGAACCAGGGATGCAAAGATAGCCAGGCCC...AAGTTCCTCAGCATGCTGGAAATGTATAGTAATAAATGACACCCCTTTGAATAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR-3UTR CCA 90 bp | CAGAAAGTGGACACAAAGATTTCTCCAGATTATATGGAGCCTCGAAGGCAAAGCCCCACCATGACATACTaGATTCACAAGATCTCTACT | + |
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Preference number: 2 (lower is better) Translates to: QKVDTKISPDYMEPRRQSPTMTY*IHKIST Trigger: AGTAGAGATCTTGTGAATCCAGTATGTCATGGTGGG...GCTTTGCCTTCGAGGCTCCATATAATCTGGAGAAATCTTTGTGTCCACTTTCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR-3UTR CCA 90 bp | GCCTGTGTAGTAAAACTCCAGACAGGTACTGTCACTGTTCTTGTACTTTGTGTTTTGGGGACAAAACCTTaGTCTTCTGCAAGATCAGGA | + |
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Preference number: 2 (lower is better) Translates to: ACVVKLQTGTVTVLVLCVLGTKP*SSARSG Trigger: TCCTGATCTTGCAGAAGACCAAGGTTTTGTCCCCAA...AACACAAAGTACAAGAACAGTGACAGTACCTGTCTGGAGTTTTACTACACAGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR-3UTR TCA 90 bp | GCCTGTGTAGTAAAACTCCAGACAGGTACTGTCACTGTTCTTGTACTTTGTGTTGCATTTAATTCATCCTaGAACATGTGCCAGACATGG | + |
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Preference number: 2 (lower is better) Translates to: ACVVKLQTGTVTVLVLCVAFNSS*NMCQTW Trigger: CCATGTCTGGCACATGTTTCAGGATGAATTAAATGC...AACACAAAGTACAAGAACAGTGACAGTACCTGTCTGGAGTTTTACTACACAGGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR-3UTR GCA 90 bp | TTTAAAGGTTTGATCCATCATCATGGTGGGAAACATGGTGGTAAGCAGGCAGGCGCTTCAGATCATCTCTaGAACAATAATTTTGGATGC | + |
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Preference number: 2 (lower is better) Translates to: FKGLIHHHGGKHGGKQAGASDHL*NNNFGC Trigger: GCATCCAAAATTATTGTTGCAGAGATGATCTGAAGC...GCCTGCCTGCTTACCACCATGTTTCCCACCATGATGATGGATCAAACCTTTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR-3UTR TCA 90 bp | CTATCTTTGCATCCCTGGTTCCTTATCCACTGTGACTATATTAACAGCTTCTTTTACCAGTATTTATTCTaGAAGGCTGTGTGTTCCAAC | + |
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Preference number: 2 (lower is better) Translates to: LSLHPWFLIHCDYINSFFYQYLF*KAVCSN Trigger: GTTGGAACACACAGCCTTTCAGAATAAATACTGGTA...AAAGAAGCTGTTAATATAGTCACAGTGGATAAGGAACCAGGGATGCAAAGATAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR-3UTR TCA 90 bp | TTGCTCCTTTACAGTATATTGATGCTTCCAATCTACAAATGTTTGCCCAAATGTAGTAAGGTTAGAGGATaGCTCTGGGGAGTTGGTAAT | + |
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Preference number: 2 (lower is better) Translates to: LLLYSILMLPIYKCLPKCSKVRG*LWGVGN Trigger: ATTACCAACTCCCCAGAGTCATCCTCTAACCTTACT...ACATTTGGGCAAACATTTGTAGATTGGAAGCATCAATATACTGTAAAGGAGCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR CAA 90 bp | TTACCGAGCTTTATAAATAGCCTTGGGTACAGTAAGGACCTAGGATaGCTCCTTTACAGTATATTGATGCTTCCAATCTACAAATGTTTG | + |
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Preference number: 2 (lower is better) Translates to: LPSFINSLGYSKDLG*LLYSILMLPIYKCL Trigger: CAAACATTTGTAGATTGGAAGCATCAATATACTGTAAAGGAGCAATCCTAGGTCCTTACTGTACCCAAGGCTATTTATAAAGCTCGGTAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR-3UTR GCA 90 bp | ATCTTTTATCTCTGTGCTCCATCAGATGACTCCAGAATCAAGCAGCATAAAGGATCTGTTGATTCTTGGTaGTTTCATTGTATGGTGAAT | + |
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Preference number: 2 (lower is better) Translates to: IFYLCAPSDDSRIKQHKGSVDSW*FHCMVN Trigger: ATTCACCATACAATGAAAGCACCAAGAATCAACAGA...TCCTTTATGCTGCTTGATTCTGGAGTCATCTGATGGAGCACAGAGATAAAAGAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR-3UTR CCA 90 bp | GCCCAAATGTCTCCAGGGCTAAGACATATAGTAGCTCAAATGTTCTTACATTTGAATCCTCAAAAAGACTaGTTTAAGGATTTCTGTCCT | + |
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Preference number: 2 (lower is better) Translates to: AQMSPGLRHIVAQMFLHLNPQKD*FKDFCP Trigger: AGGACAGAAATCCTTAAACCAGTCTTTTTGAGGATT...CAAATGTAAGAACATTTGAGCTACTATATGTCTTAGCCCTGGAGACATTTGGGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR GCA 72 bp | TTTCCCACCCCTGCTGCGGCTTCGTTCTCTGACCTCTaGCTTTGGACACTGCCAGCCTCCTGTTCCTCCTCA | + |
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Preference number: 3 (lower is better) Translates to: FPTPAAASFSDL*LWTLPASCSSS Trigger: TGAGGAGGAACAGGAGGCTGGCAGTGTCCAAAGGCAGAGGTCAGAGAACGAAGCCGCAGCAGGGGTGGGAAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR CCA 72 bp | ACCCCTGCTGCGGCTTCGTTCTCTGACCTCTGCCTTTaGACACTGCCAGCCTCCTGTTCCTCCTCACTTCCT | + |
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Preference number: 3 (lower is better) Translates to: TPAAASFSDLCL*TLPASCSSSLP Trigger: AGGAAGTGAGGAGGAACAGGAGGCTGGCAGTGTCCAAAGGCAGAGGTCAGAGAACGAAGCCGCAGCAGGGGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR TCA 72 bp | CTCTCTTCTCCCGGTGAGGCAGCAGTCACCACAGTGTaGCCTGTGGTGTCGTACCCTCCACTCAAAGGCATT | + |
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Preference number: 3 (lower is better) Translates to: LSSPGEAAVTTV*PVVSYPPLKGI Trigger: AATGCCTTTGAGTGGAGGGTACGACACCACAGGTCACACTGTGGTGACTGCTGCCTCACCGGGAGAAGAGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR GCA 72 bp | ACATGCAGCCCCCAGACCTGCTTACAGAGGTCCTCATaGAGGAGCGAGAACCCGAGGAATGACTTCGGAAGT | + |
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Preference number: 3 (lower is better) Translates to: TCSPQTCLQRSS*RSENPRNDFGS Trigger: ACTTCCGAAGTCATTCCTCGGGTTCTCGCTCCTGCATGAGGACCTCTGTAAGCAGGTCTGGGGGCTGCATGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR TCA 72 bp | CAGTCCATTTGTCTCAGAGGTACTCTCTTCTCCCGGTaGGGCAGCAGTCACCACAGTGTGACCTGTGGTGTC | + |
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Preference number: 3 (lower is better) Translates to: QSICLRGTLFSR*GSSHHSVTCGV Trigger: GACACCACAGGTCACACTGTGGTGACTGCTGCCTCACCGGGAGAAGAGAGTACCTCTGAGACAAATGGACTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR TCA 72 bp | TCATGGTGGGAGGGGACTGGCTCACATCTGGGTGTCTaGGTAAGGTTAGAGGATGACTCTGGGGAGTTGGTA | + |
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Preference number: 3 (lower is better) Translates to: SWWEGTGSHLGV*VRLEDDSGELV Trigger: TACCAACTCCCCAGAGTCATCCTCTAACCTTACTCAGACACCCAGATGTGAGCCAGTCCCCTCCCACCATGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR TCA 72 bp | TTAGAGGCAGTCTTGCTGCACAGCCCAGGCTCCCCTTaGTCTTGCAGCCCTACTGCCGGGATTATATATGTG | + |
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Preference number: 3 (lower is better) Translates to: LEAVLLHSPGSP*SCSPTAGIIYV Trigger: CACATATATAATCCCGGCAGTAGGGCTGCAAGATCAAGGGGAGCCTGGGCTGTGCAGCAAGACTGCCTCTAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR TCA 72 bp | GGAAACATGGTGGTAAGCAGGCAGGCATGGTACTGTTaGGTAGCTGAGAGCTACATCCTGATCCACAGGCAG | + |
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Preference number: 3 (lower is better) Translates to: GNMVVSRQAWYC*VAESYILIHRQ Trigger: CTGCCTGTGGATCAGGATGTAGCTCTCAGCTACTCAACAGTACCATGCCTGCCTGCTTACCACCATGTTTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR GCA 72 bp | AGTGTGAATGTGGAGGTCACTTCTCTCCTTCCACCATaGAGGTCCCAGGGACGGAACTCAGGTTTTTGTAAG | + |
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Preference number: 3 (lower is better) Translates to: SVNVEVTSLLPP*RSQGRNSGFCK Trigger: CTTACAAAAACCTGAGTTCCGTCCCTGGGACCTGCATGGTGGAAGGAGAGAAGTGACCTCCACATTCACACT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR TCA 72 bp | TGGTCTTCTGCAAGATCAGGAGGCACTCTTAACCACTaGGCCATCTGCACAGCCCTCGTTCAACAGATTGTA | + |
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Preference number: 3 (lower is better) Translates to: WSSARSGGTLNH*AICTALVQQIV Trigger: TACAATCTGTTGAACGAGGGCTGTGCAGATGGCTCAGTGGTTAAGAGTGCCTCCTGATCTTGCAGAAGACCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR GCA 72 bp | CTTCCTCTGCTCTTCTGGGAAGGGCCTGGCTATCTTTaGATCCCTGGTTCCTTATCCACTGTGACTATATTA | + |
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Preference number: 3 (lower is better) Translates to: LPLLFWEGPGYL*IPGSLSTVTIL Trigger: TAATATAGTCACAGTGGATAAGGAACCAGGGATGCAAAGATAGCCAGGCCCTTCCCAGAAGAGCAGAGGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR GCA 72 bp | CCTTACCTCCAAAGAGCTAACCCACTAAAGCAGAGCTaGCTGGCTCTCACTCAGTCACTGTCAGCATTTAAT | + |
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Preference number: 3 (lower is better) Translates to: PYLQRANPLKQS*LALTQSLSAFN Trigger: ATTAAATGCTGACAGTGACTGAGTGAGAGCCAGGCAGCTCTGCTTTAGTGGGTTAGCTCTTTGGAGGTAAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR CCA 72 bp | GCAGTTACAGATGGTTGTGAGCCACTATGTGGGTTTTaGGGACAAAACCTTGGTCTTCTGCAAGATCAGGAG | + |
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Preference number: 3 (lower is better) Translates to: AVTDGCEPLCGF*GQNLGLLQDQE Trigger: CTCCTGATCTTGCAGAAGACCAAGGTTTTGTCCCCAAAACCCACATAGTGGCTCACAACCATCTGTAACTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR CCA 72 bp | CGTGTAAGACTAAGTATGCCACACCAGAGGGCTAAATaGCCTCTGATGCTAGGTACAGCTGCAGAATTAAAC | + |
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Preference number: 3 (lower is better) Translates to: RVRLSMPHQRAK*PLMLGTAAELN Trigger: GTTTAATTCTGCAGCTGTACCTAGCATCAGAGGCCATTTAGCCCTCTGGTGTGGCATACTTAGTCTTACACG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR CCA 72 bp | TGCAGAAAGTGGACACAAAGATTTCTCCAGATTATATaGAGCCTCGAAGGCAAAGCCTGGCTCAAAAGCCAA | + |
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Preference number: 3 (lower is better) Translates to: CRKWTQRFLQII*SLEGKAWLKSQ Trigger: TTGGCTTTTGAGCCAGGCTTTGCCTTCGAGGCTCCATATAATCTGGAGAAATCTTTGTGTCCACTTTCTGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR-3UTR CAA 90 bp | TTGCTCCTTTACAGTATATTGATGCTTCCAATCTACAAATGTTTGCCCAAATGTAGGGCCTGGCTATCTTaGCATCCCTGGTTCCTTATC | + |
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Preference number: 3 (lower is better) Translates to: LLLYSILMLPIYKCLPKCRAWLS*HPWFLI Trigger: GATAAGGAACCAGGGATGCAAAGATAGCCAGGCCCT...ACATTTGGGCAAACATTTGTAGATTGGAAGCATCAATATACTGTAAAGGAGCAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR TCA 72 bp | TGGGCACTAGACAGAAACATAAAAACCCAGCAAACATaGGGTGTGTATTGCTACATAATTCTGAACCCCAGA | + |
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Preference number: 3 (lower is better) Translates to: WALDRNIKTQQT*GVYCYIILNPR Trigger: TCTGGGGTTCAGAATTATGTAGCAATACACACCTCATGTTTGCTGGGTTTTTATGTTTCTGTCTAGTGCCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR TCA 72 bp | ATCCTGTGTTTAATAACTGCTCTGCAAAAAGAGAGGTaGCTAAGAAGTCCTAATTTGGCTTGGAAGCAGAGG | + |
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Preference number: 3 (lower is better) Translates to: ILCLITALQKER*LRSPNLAWKQR Trigger: CCTCTGCTTCCAAGCCAAATTAGGACTTCTTAGTCACCTCTCTTTTTGCAGAGCAGTTATTAAACACAGGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR TCA 72 bp | CTTAAACAGTACCTGGTGACTAAGCATTTGACTCTCTaGGCCTATGGGGGCCATTCTTTATCAAACCATAAT | + |
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Preference number: 3 (lower is better) Translates to: LKQYLVTKHLTL*AYGGHSLSNHN Trigger: ATTATGGTTTGATAAAGAATGGCCCCCATAGGCTCAGAGAGTCAAATGCTTAGTCACCAGGTACTGTTTAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR CCA 72 bp | AAAGGAATGGCAGCTAGCACTCTTTTTGGCACTTTCTaGATGCTAACCATGAAATCCAGACTTGAAGCAATT | + |
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Preference number: 3 (lower is better) Translates to: KGMAASTLFGTF*MLTMKSRLEAI Trigger: AATTGCTTCAAGTCTGGATTTCATGGTTAGCATCCAGAAAGTGCCAAAAAGAGTGCTAGCTGCCATTCCTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000122330.2 |
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| 3UTR CCA 72 bp | GACGGAACTCAGGTTTTTGTAAGGGAACACCTTTATTaGCTGCACCAACCGCTTTGGACTTATTTATATACA | + |
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Preference number: 3 (lower is better) Translates to: DGTQVFVREHLY*LHQPLWTYLYT Trigger: TGTATATAAATAAGTCCAAAGCGGTTGGTGCAGCCAATAAAGGTGTTCCCTTACAAAAACCTGAGTTCCGTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR-3UTR CAA 90 bp | GCCTGTGTAGTAAAACTCCAGACAGGTACTGTCACTGTTCTTGTACTTTGTGTTTCCAATTCTGTGAATTaGAATTTCCAAATGCTCCTG | + |
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Preference number: 3 (lower is better) Translates to: ACVVKLQTGTVTVLVLCVSNSVN*NFQMLL Trigger: CAGGAGCATTTGGAAATTCAAATTCACAGAATTGGA...AACACAAAGTACAAGAACAGTGACAGTACCTGTCTGGAGTTTTACTACACAGGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR TCA 72 bp | TTGGCCATATTTATCTCAGTCACTGTTCTATTGCTGTaGACTGACACCATGACTAAACCAACTCTTAAAGGA | + |
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Preference number: 3 (lower is better) Translates to: LAIFISVTVLLL*TDTMTKPTLKG Trigger: TCCTTTAAGAGTTGGTTTAGTCATGGTGTCAGTTCACAGCAATAGAACAGTGACTGAGATAAATATGGCCAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR-3UTR CAA 90 bp | GTATTCAAAGGGGTGTCATTTATTACTATACATTTCCAGCATGCTGAGGAACTTAACATGAGGTGTGTATaGCTACATAATTCTGAACCC | + |
|
Preference number: 3 (lower is better) Translates to: VFKGVSFITIHFQHAEELNMRCV*LHNSEP Trigger: GGGTTCAGAATTATGTAGCAATACACACCTCATGTT...AAGTTCCTCAGCATGCTGGAAATGTATAGTAATAAATGACACCCCTTTGAATAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR-3UTR CAA 90 bp | TTGCTCCTTTACAGTATATTGATGCTTCCAATCTACAAATGTTTGCCCAAATGTACTGACAAGAGAATTTaGTGCAAAGGCAGAATGGAA | + |
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Preference number: 3 (lower is better) Translates to: LLLYSILMLPIYKCLPKCTDKRI*CKGRME Trigger: TTCCATTCTGCCTTTGCACAAAATTCTCTTGTCAGT...ACATTTGGGCAAACATTTGTAGATTGGAAGCATCAATATACTGTAAAGGAGCAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR CAA 72 bp | TTTAGAGGCAGTCTTGCTGCACAGCCCAGGCTCCCCTaGATCTTGCAGCCCTACTGCCGGGATTATATATGT | + |
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Preference number: 4 (lower is better) Translates to: FRGSLAAQPRLP*ILQPYCRDYIC Trigger: ACATATATAATCCCGGCAGTAGGGCTGCAAGATCAAGGGGAGCCTGGGCTGTGCAGCAAGACTGCCTCTAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR CAA 72 bp | AGCAGCATAAAGGAACGCCCAAGATTCCAGGGTACTTaGACCTTCACCTGTAATCCTGCTCTCAAGGGTGGA | + |
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Preference number: 4 (lower is better) Translates to: SSIKERPRFQGT*TFTCNPALKGG Trigger: TCCACCCTTGAGAGCAGGATTACAGGTGAAGGTCAAAGTACCCTGGAATCTTGGGCGTTCCTTTATGCTGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR CAA 72 bp | ACTTCCTCTGCTCTTCTGGGAAGGGCCTGGCTATCTTaGCATCCCTGGTTCCTTATCCACTGTGACTATATT | + |
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Preference number: 4 (lower is better) Translates to: TSSALLGRAWLS*HPWFLIHCDYI Trigger: AATATAGTCACAGTGGATAAGGAACCAGGGATGCAAAGATAGCCAGGCCCTTCCCAGAAGAGCAGAGGAAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR CAA 72 bp | AAAACTCCAGACAGGTACTGTCACTGTTCTTGTACTTaGTGTTTAGAGGCAGTCTTGCTGCACAGCCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: KTPDRYCHCSCT*CLEAVLLHSPG Trigger: GCCTGGGCTGTGCAGCAAGACTGCCTCTAAACACAAAGTACAAGAACAGTGACAGTACCTGTCTGGAGTTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| CDS-3UTR CCA 90 bp | CATGATGAGTTATGTTCACACAGCTCCCCTATGAGAGCAGCCTTTGAGATGTCAAATATTCAGTTTCGATaGGCACACAAGCAGACACTC | + |
|
Preference number: 4 (lower is better) Translates to: HDELCSHSSPMRAAFEMSNIQFR*AHKQTL Trigger: GAGTGTCTGCTTGTGTGCCCATCGAAACTGAATATT...TGACATCTCAAAGGCTGCTCTCATAGGGGAGCTGTGTGAACATAACTCATCATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122330.2 |
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| 3UTR CAA 72 bp | GGACGGAACTCAGGTTTTTGTAAGGGAACACCTTTATaGGCTGCACCAACCGCTTTGGACTTATTTATATAC | + |
|
Preference number: 4 (lower is better) Translates to: GRNSGFCKGTPL*AAPTALDLFIY Trigger: GTATATAAATAAGTCCAAAGCGGTTGGTGCAGCCAATAAAGGTGTTCCCTTACAAAAACCTGAGTTCCGTCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| CDS-3UTR GCA 90 bp | ACTCAGGTTTTTGTAAGGGAACACCTTTATTGGCTGCACCAACCGCTTTGGACTAATCGCACTTGTAGCTaGAGGAACTTTAAATTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: TQVFVREHLYWLHQPLWTNRTCS*RNFKFF Trigger: GAAGAATTTAAAGTTCCTGCAGCTACAAGTGCGATT...AGTCCAAAGCGGTTGGTGCAGCCAATAAAGGTGTTCCCTTACAAAAACCTGAGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| CDS-3UTR GCA 90 bp | CTATCTTTGCATCCCTGGTTCCTTATCCACTGTGACTATATTAACAGCTTCTTTCTCAGTTCTGAGCCGTaGTTCAGGAAAACATTCCCA | + |
|
Preference number: 4 (lower is better) Translates to: LSLHPWFLIHCDYINSFFLSSEP*FRKTFP Trigger: TGGGAATGTTTTCCTGAAGCACGGCTCAGAACTGAG...AAAGAAGCTGTTAATATAGTCACAGTGGATAAGGAACCAGGGATGCAAAGATAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| 3UTR CAA 72 bp | CAGAAACATAAAAACCCAGCAAACATGAGGTGTGTATaGCTACATAATTCTGAACCCCAGAATGTGCTCCAC | + |
|
Preference number: 4 (lower is better) Translates to: QKHKNPANMRCV*LHNSEPQNVLH Trigger: GTGGAGCACATTCTGGGGTTCAGAATTATGTAGCAATACACACCTCATGTTTGCTGGGTTTTTATGTTTCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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| CDS-3UTR GCA 90 bp | AAGCAATTCACTATCTCAAAATCAGTACCTGGTAACACAGTCTCACCTTCAGACAATCGCACTTGTAGCTaGAGGAACTTTAAATTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: KQFTISKSVPGNTVSPSDNRTCS*RNFKFF Trigger: GAAGAATTTAAAGTTCCTGCAGCTACAAGTGCGATT...GTCTGAAGGTGAGACTGTGTTACCAGGTACTGATTTTGAGATAGTGAATTGCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122330.2 |
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| 3UTR CAA 72 bp | TTTATAAATAGCCTTGGGTACAGTAAGGACCTAGGATaGCTCCTTTACAGTATATTGATGCTTCCAATCTAC | + |
|
Preference number: 4 (lower is better) Translates to: FINSLGYSKDLG*LLYSILMLPIY Trigger: GTAGATTGGAAGCATCAATATACTGTAAAGGAGCAATCCTAGGTCCTTACTGTACCCAAGGCTATTTATAAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146598.8 |
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