Pregenerated sensors for UFD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000005262Ensembl transcript IDs: ENSMUST00000005394.13, ENSMUST00000115578.10, ENSMUST00000163695.3, ENSMUST00000171789.8, ENSMUST00000172013.9, ENSMUST00000172451.2
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTCACCCCAAAAGCAAGACCAAAGACCCACAGGATGAATTCAGTATaGGAAGATCTTCAAGTTTCCAAAGCAAAGATTGTGTCCACAATC | + |
|
Preference number: 1 (lower is better) Translates to: LTPKARPKTHRMNSV*EDLQVSKAKIVSTI Trigger: GATTGTGGACACAATCTTTGCTTTGGAAACTTGAAGATCTTCCCATACTGAATTCATCCTGTGGGTCTTTGGTCTTGCTTTTGGGGTGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163695.3 |
||
| 3UTR-3UTR TCA 90 bp | GGGGGCACGTTACTCAAGCATGTATTCATTCTGCCTTTCATATCTGGCTTCATCCGGGAGCTGCTCTGCTaGGGCTGTGAGGGCCCTGAA | + |
|
Preference number: 2 (lower is better) Translates to: GGTLLKHVFILPFISGFIRELLC*GCEGPE Trigger: TTCAGGGCCCTCACAGCCTCAGCAGAGCAGCTCCCG...GATGAAGCCAGATATGAAAGGCAGAATGAATACATGCTTGAGTAACGTGCCCCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| 3UTR-3UTR TCA 90 bp | GTCACTGTAAATAAAAACAGAGGCCATCTTTGTCTGGTACTCAAGTGCTGGCCTCGGGAGCTGCTCTGCTaGGGCTGTGAGGGCCCTGAA | + |
|
Preference number: 2 (lower is better) Translates to: VTVNKNRGHLCLVLKCWPRELLC*GCEGPE Trigger: TTCAGGGCCCTCACAGCCTCAGCAGAGCAGCTCCCG...AGGCCAGCACTTGAGTACCAGACAAAGATGGCCTCTGTTTTTATTTACAGTGAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| 3UTR-3UTR CCA 90 bp | GGTTCTGGTTCAATCCTAGCACTTGAAAAACAGACAAACCATCAGAACCTTGGGGCTGGAGTTAGGGAGTaGAGGAGGCCACCACCTAGA | + |
|
Preference number: 2 (lower is better) Translates to: GSGSILALEKQTNHQNLGAGVRE*RRPPPR Trigger: TCTAGGTGGTGGCCTCCTCCACTCCCTAACTCCAGC...CCCAAGGTTCTGATGGTTTGTCTGTTTTTCAAGTGCTAGGATTGAACCAGAACC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| 3UTR-3UTR TCA 90 bp | TTAACCCTCAATGTCTTGATTTTGGTCAATCTGGTTTCCTATGAGCATATGCACCCTGGAGTCTGTTCTTaGCCCCTGCATTGCCAGACC | + |
|
Preference number: 2 (lower is better) Translates to: LTLNVLILVNLVSYEHMHPGVCS*PLHCQT Trigger: GGTCTGGCAATGCAGGGGTCAAGAACAGACTCCAGG...GTGCATATGCTCATAGGAAACCAGATTGACCAAAATCAAGACATTGAGGGTTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172451.2 |
||
| 3UTR-3UTR CCA 90 bp | AAAAATAAATGTAACGGGGGCACGTTACTCAAGCATGTATTCATTCTGCCTTTCGCTGGAGTTAGGGAGTaGAGGAGGCCACCACCTAGA | + |
|
Preference number: 2 (lower is better) Translates to: KNKCNGGTLLKHVFILPFAGVRE*RRPPPR Trigger: TCTAGGTGGTGGCCTCCTCCACTCCCTAACTCCAGC...GAAAGGCAGAATGAATACATGCTTGAGTAACGTGCCCCCGTTACATTTATTTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| 3UTR-3UTR TCA 90 bp | TTTGTATCCCAAGGGAGCATCAAAATCCACATTCATGTCACATTCAATAATGGATTGACACTTTCCACCTaGACCAGGCCCCCTTCCTCC | + |
|
Preference number: 2 (lower is better) Translates to: FVSQGSIKIHIHVTFNNGLTLST*TRPPSS Trigger: GGAGGAAGGGGGCCTGGTTCAGGTGGAAAGTGTCAA...TCCATTATTGAATGTGACATGAATGTGGATTTTGATGCTCCCTTGGGATACAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000171789.8 ENSMUST00000172013.9 |
||
| 3UTR-3UTR TCA 90 bp | TCTGGTTCTTTGTATCCCAAGGGAGCATCAAAATCCACATTCATGTCACATTCATCGCCACTTGGAGGTTaGCACTTTCCACCTGAACCA | + |
|
Preference number: 2 (lower is better) Translates to: SGSLYPKGASKSTFMSHSSPLGG*HFPPEP Trigger: TGGTTCAGGTGGAAAGTGTCAACCTCCAAGTGGCGA...TGAATGTGACATGAATGTGGATTTTGATGCTCCCTTGGGATACAAAGAACCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171789.8 ENSMUST00000172013.9 |
||
| 3UTR-3UTR GCA 90 bp | TTCATTCTGCCTTTCATATCTGGCTTCATCATGGAATTCACTGAGAGCGAGCAGACCTCCAAGTTCTGCTaGTTTGTATCCAGGACAAGC | + |
|
Preference number: 2 (lower is better) Translates to: FILPFISGFIMEFTESEQTSKFC*FVSRTS Trigger: GCTTGTCCTGGATACAAAGCAGCAGAACTTGGAGGT...CTGCTCGCTCTCAGTGAATTCCATGATGAAGCCAGATATGAAAGGCAGAATGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| 3UTR-3UTR GCA 90 bp | GGGGCACGTTACTCAAGCATGTATTCATTCTGCCTTTCATATCTGGCTTCATCAACCTCCAAGTTCTGCTaGTTTGTATCCAGGACAAGC | + |
|
Preference number: 2 (lower is better) Translates to: GARYSSMYSFCLSYLASSTSKFC*FVSRTS Trigger: GCTTGTCCTGGATACAAAGCAGCAGAACTTGGAGGT...TGATGAAGCCAGATATGAAAGGCAGAATGAATACATGCTTGAGTAACGTGCCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| 3UTR-3UTR CCA 90 bp | TTCATTCTGCCTTTCATATCTGGCTTCATCATGGAATTCACTGAGAGCGAGCAGCACCATGAACAGACATaGGGAAGAAGAGTGAGTCAG | + |
|
Preference number: 2 (lower is better) Translates to: FILPFISGFIMEFTESEQHHEQT*GRRVSQ Trigger: CTGACTCACTCTTCTTCCCCATGTCTGTTCATGGTG...CTGCTCGCTCTCAGTGAATTCCATGATGAAGCCAGATATGAAAGGCAGAATGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| 3UTR-3UTR CCA 90 bp | AGGCTGGAACTTAGAGTAGGTCGCCACTTGGAGGTTGACACTTTCCACCTGAACAGGATGAATTCAGTATaGGAAGATCTTCAAGTTTCC | + |
|
Preference number: 2 (lower is better) Translates to: RLELRVGRHLEVDTFHLNRMNSV*EDLQVS Trigger: GGAAACTTGAAGATCTTCCCATACTGAATTCATCCT...GTTCAGGTGGAAAGTGTCAACCTCCAAGTGGCGACCTACTCTAAGTTCCAGCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163695.3 |
||
| 3UTR CAA 90 bp | TCTCCCTCTATTGACTCCTCATGCTGCACTGGTCTTTCTGGTTCTTaGTATCCCAAGGGAGCATCAAAATCCACATTCATGTCACATTCA | + |
|
Preference number: 2 (lower is better) Translates to: SPSIDSSCCTGLSGS*YPKGASKSTFMSHS Trigger: TGAATGTGACATGAATGTGGATTTTGATGCTCCCTTGGGATACAAAGAACCAGAAAGACCAGTGCAGCATGAGGAGTCAATAGAGGGAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171789.8 ENSMUST00000172013.9 |
||
| 3UTR-3UTR GCA 90 bp | GGTTCTGGTTCAATCCTAGCACTTGAAAAACAGACAAACCATCAGAACCTTGGGACAACCTCCAAGTTCTaGTGCTTTGTATCCAGGACA | + |
|
Preference number: 2 (lower is better) Translates to: GSGSILALEKQTNHQNLGTTSKF*CFVSRT Trigger: TGTCCTGGATACAAAGCAGCAGAACTTGGAGGTTGT...CCCAAGGTTCTGATGGTTTGTCTGTTTTTCAAGTGCTAGGATTGAACCAGAACC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| 3UTR-3UTR CCA 90 bp | TTAACCCTCAATGTCTTGATTTTGGTCAATCTGGTTTCCTATGAGCATATGCACCCAACCAGAGTCAGCTaGGCCTGTTCAAAGCATTCG | + |
|
Preference number: 2 (lower is better) Translates to: LTLNVLILVNLVSYEHMHPTRVS*ACSKHS Trigger: CGAATGCTTTGAACAGGCCCAGCTGACTCTGGTTGG...GTGCATATGCTCATAGGAAACCAGATTGACCAAAATCAAGACATTGAGGGTTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172451.2 |
||
| 3UTR-3UTR TCA 90 bp | CACGTTACTCAAGCATGTATTCATTCTGCCTTTCATATCTGGCTTCATCATGGAGCGAGCAGATTAAAATaGGAGCGCTTTCATCTGGAT | + |
|
Preference number: 2 (lower is better) Translates to: HVTQACIHSAFHIWLHHGASRLK*ERFHLD Trigger: ATCCAGATGAAAGCGCTCTCATTTTAATCTGCTCGC...TCCATGATGAAGCCAGATATGAAAGGCAGAATGAATACATGCTTGAGTAACGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| 3UTR-3UTR GCA 90 bp | CACGTTACTCAAGCATGTATTCATTCTGCCTTTCATATCTGGCTTCATCATGGAACAACCTCCAAGTTCTaGTGCTTTGTATCCAGGACA | + |
|
Preference number: 2 (lower is better) Translates to: HVTQACIHSAFHIWLHHGTTSKF*CFVSRT Trigger: TGTCCTGGATACAAAGCAGCAGAACTTGGAGGTTGT...TCCATGATGAAGCCAGATATGAAAGGCAGAATGAATACATGCTTGAGTAACGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| 3UTR-3UTR CCA 90 bp | AAAAATAAATGTAACGGGGGCACGTTACTCAAGCATGTATTCATTCTGCCTTTCCACCATGAACAGACATaGGGAAGAAGAGTGAGTCAG | + |
|
Preference number: 2 (lower is better) Translates to: KNKCNGGTLLKHVFILPFHHEQT*GRRVSQ Trigger: CTGACTCACTCTTCTTCCCCATGTCTGTTCATGGTG...GAAAGGCAGAATGAATACATGCTTGAGTAACGTGCCCCCGTTACATTTATTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| 3UTR-3UTR CCA 90 bp | AAAAATAAATGTAACGGGGGCACGTTACTCAAGCATGTATTCATTCTGCCTTTCTATCTGGCTTCATCATaGAATTCACTGAGAGCGAGC | + |
|
Preference number: 2 (lower is better) Translates to: KNKCNGGTLLKHVFILPFYLASS*NSLRAS Trigger: GCTCGCTCTCAGTGAATTCCATGATGAAGCCAGATA...GAAAGGCAGAATGAATACATGCTTGAGTAACGTGCCCCCGTTACATTTATTTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| 3UTR-3UTR TCA 90 bp | GTGTTCATATTAACCCTCAATGTCTTGATTTTGGTCAATCTGGTTTCCTATGAGATAGTTAAGCATGTGTaGAGTCCTGGGTTCAACTTC | + |
|
Preference number: 2 (lower is better) Translates to: VFILTLNVLILVNLVSYEIVKHV*SPGFNF Trigger: GAAGTTGAACCCAGGACTTCACACATGCTTAACTAT...CTCATAGGAAACCAGATTGACCAAAATCAAGACATTGAGGGTTAATATGAACAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172451.2 |
||
| 3UTR GCA 72 bp | GGGTATGGGGGAGCCTCAGTGGCAGAGTGTGTGGCATaGTTAATATTCACGAGGTTCTGGTTCAATCCTAGC | + |
|
Preference number: 3 (lower is better) Translates to: GYGGASVAECVA*LIFTRFWFNPS Trigger: GCTAGGATTGAACCAGAACCTCGTGAATATTAAGCATGCCACACACTCTGCCACTGAGGCTCCCCCATACCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| 3UTR-3UTR CAA 90 bp | GGTCAGCTTCTCCCTCTATTGACTCCTCATGCTGCACTGGTCTTTCTGGTTCTTAGAGTAGGTCGCCACTaGGAGGTTGACACTTTCCAC | + |
|
Preference number: 3 (lower is better) Translates to: GQLLPLLTPHAALVFLVLRVGRH*EVDTFH Trigger: GTGGAAAGTGTCAACCTCCAAGTGGCGACCTACTCT...AAGAACCAGAAAGACCAGTGCAGCATGAGGAGTCAATAGAGGGAGAAGCTGACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171789.8 ENSMUST00000172013.9 |
||
| 3UTR-3UTR CAA 90 bp | CCCAAGGGAGCATCAAAATCCACATTCATGTCACATTCAATAATGGATACAGCCAGAGTAGGTCGCCACTaGGAGGTTGACACTTTCCAC | + |
|
Preference number: 3 (lower is better) Translates to: PKGASKSTFMSHSIMDTARVGRH*EVDTFH Trigger: GTGGAAAGTGTCAACCTCCAAGTGGCGACCTACTCT...GGCTGTATCCATTATTGAATGTGACATGAATGTGGATTTTGATGCTCCCTTGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171789.8 ENSMUST00000172013.9 |
||
| 3UTR-3UTR CAA 90 bp | TTTGTATCCCAAGGGAGCATCAAAATCCACATTCATGTCACATTCAATAATGGAACAGCCTTGTCAGGTTaGGTCTCCATCACCCGCAGC | + |
|
Preference number: 3 (lower is better) Translates to: FVSQGSIKIHIHVTFNNGTALSG*VSITRS Trigger: GCTGCGGGTGATGGAGACCAAACCTGACAAGGCTGT...TCCATTATTGAATGTGACATGAATGTGGATTTTGATGCTCCCTTGGGATACAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171789.8 ENSMUST00000172013.9 |
||
| 3UTR-3UTR CAA 90 bp | TTCAATAATGGATACAGCCTTGTCAGGTTTGGTCTCCATCACCCGCAGCTCATAAATACCGCTTTAGGGTaGGTAATATCCAGGAAGTCT | + |
|
Preference number: 3 (lower is better) Translates to: FNNGYSLVRFGLHHPQLINTALG*VISRKS Trigger: AGACTTCCTGGATATTACCAACCCTAAAGCGGTATT...TATGAGCTGCGGGTGATGGAGACCAAACCTGACAAGGCTGTATCCATTATTGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171789.8 ENSMUST00000172013.9 |
||
| 3UTR TCA 72 bp | TCATCATGGAATTCACTGAGAGCGAGCAGATTAAAATaGGAGCGCTTTCATCTGGATGAGATCCCTTCTGAG | + |
|
Preference number: 3 (lower is better) Translates to: SSWNSLRASRLK*ERFHLDEIPSE Trigger: CTCAGAAGGGATCTCATCCAGATGAAAGCGCTCTCATTTTAATCTGCTCGCTCTCAGTGAATTCCATGATGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| 3UTR TCA 72 bp | AGCTCACCCCAAAAGCAAGACCAAAGACCCACAGGATaGATTCAGTATGGGAAGATCTTCAAGTTTCCAAAG | + |
|
Preference number: 3 (lower is better) Translates to: SSPQKQDQRPTG*IQYGKIFKFPK Trigger: CTTTGGAAACTTGAAGATCTTCCCATACTGAATTCATCCTGTGGGTCTTTGGTCTTGCTTTTGGGGTGAGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163695.3 |
||
| 3UTR GCA 72 bp | GTAACGGGGGCACGTTACTCAAGCATGTATTCATTCTaGCTTTCATATCTGGCTTCATCATGGAATTCACTG | + |
|
Preference number: 3 (lower is better) Translates to: VTGARYSSMYSF*LSYLASSWNSL Trigger: CAGTGAATTCCATGATGAAGCCAGATATGAAAGGCAGAATGAATACATGCTTGAGTAACGTGCCCCCGTTAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| 3UTR TCA 72 bp | CCTCAATGTCTTGATTTTGGTCAATCTGGTTTCCTATaGGCATATGCACCTATTCCCAGGTATCATGTCCAA | + |
|
Preference number: 3 (lower is better) Translates to: PQCLDFGQSGFL*AYAPIPRYHVQ Trigger: TTGGACATGATACCTGGGAATAGGTGCATATGCTCATAGGAAACCAGATTGACCAAAATCAAGACATTGAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172451.2 |
||
| 3UTR-3UTR CAA 90 bp | AAATCCACATTCATGTCACATTCAATAATGGATACAGCCTTGTCAGGTTTGGTCAATACCGCTTTAGGGTaGGTAATATCCAGGAAGTCT | + |
|
Preference number: 3 (lower is better) Translates to: KSTFMSHSIMDTALSGLVNTALG*VISRKS Trigger: AGACTTCCTGGATATTACCAACCCTAAAGCGGTATT...GACCAAACCTGACAAGGCTGTATCCATTATTGAATGTGACATGAATGTGGATTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171789.8 ENSMUST00000172013.9 |
||
| 3UTR TCA 72 bp | TTAATATTCACGAGGTTCTGGTTCAATCCTAGCACTTaGAAAACAGACAAACCATCAGAACCTTGGGTAATA | + |
|
Preference number: 3 (lower is better) Translates to: LIFTRFWFNPST*KTDKPSEPWVI Trigger: TATTACCCAAGGTTCTGATGGTTTGTCTGTTTTTCAAGTGCTAGGATTGAACCAGAACCTCGTGAATATTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR TCA 90 bp | CTTAGAGTAGGTCGCCACTTGGAGGTTGACACTTTCCACCTGAACCAGGCCCCCTTGAGCCGGCTGAGTTaGTCGAGGGCTGAGGGTGGC | + |
|
Preference number: 4 (lower is better) Translates to: LRVGRHLEVDTFHLNQAPLSRLS*SRAEGG Trigger: GCCACCCTCAGCCCTCGATCAACTCAGCCGGCTCAA...GGGGGCCTGGTTCAGGTGGAAAGTGTCAACCTCCAAGTGGCGACCTACTCTAAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172013.9 |
||
| CDS-3UTR TCA 90 bp | GGTCGCCACTTGGAGGTTGACACTTTCCACCTGAACCAGGCCCCCTTCCTCCAAGAGTTGATCGAGGGCTaGGGGTGGCATAATTACTGT | + |
|
Preference number: 4 (lower is better) Translates to: GRHLEVDTFHLNQAPFLQELIEG*GWHNYC Trigger: ACAGTAATTATGCCACCCTCAGCCCTCGATCAACTC...TTGGAGGAAGGGGGCCTGGTTCAGGTGGAAAGTGTCAACCTCCAAGTGGCGACC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000171789.8 ENSMUST00000172013.9 |
||
| CDS-3UTR CCA 90 bp | CTGAGGCTGGAACTTAGAGTAGGTCGCCACTTGGAGGTTGACACTTTCCACCTGGAGAGAGAGCAAGCCTaGGGCTTTTCTCACAACGGC | + |
|
Preference number: 4 (lower is better) Translates to: LRLELRVGRHLEVDTFHLEREQA*GFSHNG Trigger: GCCGTTGTGAGAAAAGCCCCAGGCTTGCTCTCTCTC...CAGGTGGAAAGTGTCAACCTCCAAGTGGCGACCTACTCTAAGTTCCAGCCTCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163695.3 |
||
| CDS-3UTR TCA 90 bp | GGGGGCACGTTACTCAAGCATGTATTCATTCTGCCTTTCATATCTGGCTTCATCTTGAGCCGGCTGAGTTaGTCGAGGGCTGAGGGTGGC | + |
|
Preference number: 4 (lower is better) Translates to: GGTLLKHVFILPFISGFILSRLS*SRAEGG Trigger: GCCACCCTCAGCCCTCGATCAACTCAGCCGGCTCAA...GATGAAGCCAGATATGAAAGGCAGAATGAATACATGCTTGAGTAACGTGCCCCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR TCA 90 bp | GTCACTGTAAATAAAAACAGAGGCCATCTTTGTCTGGTACTCAAGTGCTGGCCTTTGAGCCGGCTGAGTTaGTCGAGGGCTGAGGGTGGC | + |
|
Preference number: 4 (lower is better) Translates to: VTVNKNRGHLCLVLKCWPLSRLS*SRAEGG Trigger: GCCACCCTCAGCCCTCGATCAACTCAGCCGGCTCAA...AGGCCAGCACTTGAGTACCAGACAAAGATGGCCTCTGTTTTTATTTACAGTGAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR TCA 90 bp | TTCATTCTGCCTTTCATATCTGGCTTCATCATGGAATTCACTGAGAGCGAGCAGTTGACACTTTCCACCTaGACCAGGCCCCCTTCCTCC | + |
|
Preference number: 4 (lower is better) Translates to: FILPFISGFIMEFTESEQLTLST*TRPPSS Trigger: GGAGGAAGGGGGCCTGGTTCAGGTGGAAAGTGTCAA...CTGCTCGCTCTCAGTGAATTCCATGATGAAGCCAGATATGAAAGGCAGAATGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR TCA 90 bp | GGGGGCACGTTACTCAAGCATGTATTCATTCTGCCTTTCATATCTGGCTTCATCAGCTTCTCCCTCTATTaGCTCCTCATGCTGCACTGG | + |
|
Preference number: 4 (lower is better) Translates to: GGTLLKHVFILPFISGFISFSLY*LLMLHW Trigger: CCAGTGCAGCATGAGGAGTCAATAGAGGGAGAAGCT...GATGAAGCCAGATATGAAAGGCAGAATGAATACATGCTTGAGTAACGTGCCCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR CCA 90 bp | TTCATTCTGCCTTTCATATCTGGCTTCATCATGGAATTCACTGAGAGCGAGCAGCAGCCTTGTCAGGTTTaGTCTCCATCACCCGCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: FILPFISGFIMEFTESEQQPCQV*SPSPAA Trigger: AGCTGCGGGTGATGGAGACCAAACCTGACAAGGCTG...CTGCTCGCTCTCAGTGAATTCCATGATGAAGCCAGATATGAAAGGCAGAATGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR TCA 90 bp | CACGTTACTCAAGCATGTATTCATTCTGCCTTTCATATCTGGCTTCATCATGGATTGACACTTTCCACCTaGACCAGGCCCCCTTCCTCC | + |
|
Preference number: 4 (lower is better) Translates to: HVTQACIHSAFHIWLHHGLTLST*TRPPSS Trigger: GGAGGAAGGGGGCCTGGTTCAGGTGGAAAGTGTCAA...TCCATGATGAAGCCAGATATGAAAGGCAGAATGAATACATGCTTGAGTAACGTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR TCA 90 bp | GTCACTGTAAATAAAAACAGAGGCCATCTTTGTCTGGTACTCAAGTGCTGGCCTTCGCCACTTGGAGGTTaGCACTTTCCACCTGAACCA | + |
|
Preference number: 4 (lower is better) Translates to: VTVNKNRGHLCLVLKCWPSPLGG*HFPPEP Trigger: TGGTTCAGGTGGAAAGTGTCAACCTCCAAGTGGCGA...AGGCCAGCACTTGAGTACCAGACAAAGATGGCCTCTGTTTTTATTTACAGTGAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR TCA 90 bp | GGGGCACGTTACTCAAGCATGTATTCATTCTGCCTTTCATATCTGGCTTCATCAAGCTTCTCCCTCTATTaGCTCCTCATGCTGCACTGG | + |
|
Preference number: 4 (lower is better) Translates to: GARYSSMYSFCLSYLASSSFSLY*LLMLHW Trigger: CCAGTGCAGCATGAGGAGTCAATAGAGGGAGAAGCT...TGATGAAGCCAGATATGAAAGGCAGAATGAATACATGCTTGAGTAACGTGCCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR GCA 90 bp | GGGGGCACGTTACTCAAGCATGTATTCATTCTGCCTTTCATATCTGGCTTCATCTCCAACAGCAAATTCTaGATCATCCAGTGGGGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: GGTLLKHVFILPFISGFISNSKF*IIQWGR Trigger: CCTCCCCCACTGGATGATGCAGAATTTGCTGTTGGA...GATGAAGCCAGATATGAAAGGCAGAATGAATACATGCTTGAGTAACGTGCCCCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR GCA 90 bp | GTCACTGTAAATAAAAACAGAGGCCATCTTTGTCTGGTACTCAAGTGCTGGCCTTCCAACAGCAAATTCTaGATCATCCAGTGGGGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: VTVNKNRGHLCLVLKCWPSNSKF*IIQWGR Trigger: CCTCCCCCACTGGATGATGCAGAATTTGCTGTTGGA...AGGCCAGCACTTGAGTACCAGACAAAGATGGCCTCTGTTTTTATTTACAGTGAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR CCA 90 bp | CACGTTACTCAAGCATGTATTCATTCTGCCTTTCATATCTGGCTTCATCATGGACAGCCTTGTCAGGTTTaGTCTCCATCACCCGCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: HVTQACIHSAFHIWLHHGQPCQV*SPSPAA Trigger: AGCTGCGGGTGATGGAGACCAAACCTGACAAGGCTG...TCCATGATGAAGCCAGATATGAAAGGCAGAATGAATACATGCTTGAGTAACGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR TCA 90 bp | ATAGACCTGCAATGGTTCTACAGAGTAATCAGCCCATTAGGAACAGCAGGGCCACCTCTTCAACCTTTTTaGCCAATGGACGTGAATTTC | + |
|
Preference number: 4 (lower is better) Translates to: IDLQWFYRVISPLGTAGPPLQPF*PMDVNF Trigger: GAAATTCACGTCCATTGGTCAAAAAGGTTGAAGAGG...TGGCCCTGCTGTTCCTAATGGGCTGATTACTCTGTAGAACCATTGCAGGTCTAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172451.2 |
||
| CDS-3UTR TCA 90 bp | TTCATGTCACATTCAATAATGGATACAGCCTTGTCAGGTTTGGTCTCCATCACCGAGTTGATCGAGGGCTaGGGGTGGCATAATTACTGT | + |
|
Preference number: 4 (lower is better) Translates to: FMSHSIMDTALSGLVSITELIEG*GWHNYC Trigger: ACAGTAATTATGCCACCCTCAGCCCTCGATCAACTC...GGTGATGGAGACCAAACCTGACAAGGCTGTATCCATTATTGAATGTGACATGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171789.8 ENSMUST00000172013.9 |
||
| CDS-3UTR CCA 90 bp | GGTTCTGGTTCAATCCTAGCACTTGAAAAACAGACAAACCATCAGAACCTTGGGCTGCACTGGTCTTTCTaGTTCTTTGTATCCCAAGGG | + |
|
Preference number: 4 (lower is better) Translates to: GSGSILALEKQTNHQNLGLHWSF*FFVSQG Trigger: CCCTTGGGATACAAAGAACCAGAAAGACCAGTGCAG...CCCAAGGTTCTGATGGTTTGTCTGTTTTTCAAGTGCTAGGATTGAACCAGAACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR TCA 90 bp | AAAAATAAATGTAACGGGGGCACGTTACTCAAGCATGTATTCATTCTGCCTTTCTCGCCACTTGGAGGTTaGCACTTTCCACCTGAACCA | + |
|
Preference number: 4 (lower is better) Translates to: KNKCNGGTLLKHVFILPFSPLGG*HFPPEP Trigger: TGGTTCAGGTGGAAAGTGTCAACCTCCAAGTGGCGA...GAAAGGCAGAATGAATACATGCTTGAGTAACGTGCCCCCGTTACATTTATTTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| 3UTR CAA 72 bp | ATTGACTCCTCATGCTGCACTGGTCTTTCTGGTTCTTaGTATCCCAAGGGAGCATCAAAATCCACATTCATG | + |
|
Preference number: 4 (lower is better) Translates to: IDSSCCTGLSGS*YPKGASKSTFM Trigger: CATGAATGTGGATTTTGATGCTCCCTTGGGATACAAAGAACCAGAAAGACCAGTGCAGCATGAGGAGTCAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171789.8 ENSMUST00000172013.9 |
||
| CDS-3UTR TCA 90 bp | TTCATTCTGCCTTTCATATCTGGCTTCATCATGGAATTCACTGAGAGCGAGCAGCCTCTTCAACCTTTTTaGCCAATGGACGTGAATTTC | + |
|
Preference number: 4 (lower is better) Translates to: FILPFISGFIMEFTESEQPLQPF*PMDVNF Trigger: GAAATTCACGTCCATTGGTCAAAAAGGTTGAAGAGG...CTGCTCGCTCTCAGTGAATTCCATGATGAAGCCAGATATGAAAGGCAGAATGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR CCA 90 bp | AAAAATAAATGTAACGGGGGCACGTTACTCAAGCATGTATTCATTCTGCCTTTCCTGCACTGGTCTTTCTaGTTCTTTGTATCCCAAGGG | + |
|
Preference number: 4 (lower is better) Translates to: KNKCNGGTLLKHVFILPFLHWSF*FFVSQG Trigger: CCCTTGGGATACAAAGAACCAGAAAGACCAGTGCAG...GAAAGGCAGAATGAATACATGCTTGAGTAACGTGCCCCCGTTACATTTATTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR TCA 90 bp | GTCACTGTAAATAAAAACAGAGGCCATCTTTGTCTGGTACTCAAGTGCTGGCCTTTTGACCAATGGACGTaGATTTCTGATGAAAGTGAT | + |
|
Preference number: 4 (lower is better) Translates to: VTVNKNRGHLCLVLKCWPFDQWT*ISDESD Trigger: ATCACTTTCATCAGAAATTCACGTCCATTGGTCAAA...AGGCCAGCACTTGAGTACCAGACAAAGATGGCCTCTGTTTTTATTTACAGTGAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR CCA 90 bp | AAAAATAAATGTAACGGGGGCACGTTACTCAAGCATGTATTCATTCTGCCTTTCCTCCTCATGCTGCACTaGTCTTTCTGGTTCTTTGTA | + |
|
Preference number: 4 (lower is better) Translates to: KNKCNGGTLLKHVFILPFLLMLH*SFWFFV Trigger: TACAAAGAACCAGAAAGACCAGTGCAGCATGAGGAG...GAAAGGCAGAATGAATACATGCTTGAGTAACGTGCCCCCGTTACATTTATTTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR TCA 90 bp | AAAAATAAATGTAACGGGGGCACGTTACTCAAGCATGTATTCATTCTGCCTTTCCCTCTTCAACCTTTTTaGCCAATGGACGTGAATTTC | + |
|
Preference number: 4 (lower is better) Translates to: KNKCNGGTLLKHVFILPFPLQPF*PMDVNF Trigger: GAAATTCACGTCCATTGGTCAAAAAGGTTGAAGAGG...GAAAGGCAGAATGAATACATGCTTGAGTAACGTGCCCCCGTTACATTTATTTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR TCA 90 bp | CACGTTACTCAAGCATGTATTCATTCTGCCTTTCATATCTGGCTTCATCATGGATTTGACCAATGGACGTaGATTTCTGATGAAAGTGAT | + |
|
Preference number: 4 (lower is better) Translates to: HVTQACIHSAFHIWLHHGFDQWT*ISDESD Trigger: ATCACTTTCATCAGAAATTCACGTCCATTGGTCAAA...TCCATGATGAAGCCAGATATGAAAGGCAGAATGAATACATGCTTGAGTAACGTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR TCA 90 bp | TTAACCCTCAATGTCTTGATTTTGGTCAATCTGGTTTCCTATGAGCATATGCACTTTGACCAATGGACGTaGATTTCTGATGAAAGTGAT | + |
|
Preference number: 4 (lower is better) Translates to: LTLNVLILVNLVSYEHMHFDQWT*ISDESD Trigger: ATCACTTTCATCAGAAATTCACGTCCATTGGTCAAA...GTGCATATGCTCATAGGAAACCAGATTGACCAAAATCAAGACATTGAGGGTTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172451.2 |
||
| 3UTR CAA 72 bp | ATGACTGTGTTCATATTAACCCTCAATGTCTTGATTTaGGTCAATCTGGTTTCCTATGAGCATATGCACCTA | + |
|
Preference number: 4 (lower is better) Translates to: MTVFILTLNVLI*VNLVSYEHMHL Trigger: TAGGTGCATATGCTCATAGGAAACCAGATTGACCAAAATCAAGACATTGAGGGTTAATATGAACACAGTCAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172451.2 |
||
| 3UTR CAA 72 bp | ACCTTCATGACTGTGTTCATATTAACCCTCAATGTCTaGATTTTGGTCAATCTGGTTTCCTATGAGCATATG | + |
|
Preference number: 4 (lower is better) Translates to: TFMTVFILTLNV*ILVNLVSYEHM Trigger: CATATGCTCATAGGAAACCAGATTGACCAAAATCAAGACATTGAGGGTTAATATGAACACAGTCATGAAGGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172451.2 |
||
| CDS-3UTR CAA 90 bp | GGGGGCACGTTACTCAAGCATGTATTCATTCTGCCTTTCATATCTGGCTTCATCAGAGTAGGTCGCCACTaGGAGGTTGACACTTTCCAC | + |
|
Preference number: 5 (lower is better) Translates to: GGTLLKHVFILPFISGFIRVGRH*EVDTFH Trigger: GTGGAAAGTGTCAACCTCCAAGTGGCGACCTACTCT...GATGAAGCCAGATATGAAAGGCAGAATGAATACATGCTTGAGTAACGTGCCCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR CAA 90 bp | GTCACTGTAAATAAAAACAGAGGCCATCTTTGTCTGGTACTCAAGTGCTGGCCTAGAGTAGGTCGCCACTaGGAGGTTGACACTTTCCAC | + |
|
Preference number: 5 (lower is better) Translates to: VTVNKNRGHLCLVLKCWPRVGRH*EVDTFH Trigger: GTGGAAAGTGTCAACCTCCAAGTGGCGACCTACTCT...AGGCCAGCACTTGAGTACCAGACAAAGATGGCCTCTGTTTTTATTTACAGTGAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR CAA 90 bp | GGGGCACGTTACTCAAGCATGTATTCATTCTGCCTTTCATATCTGGCTTCATCACAGCTTCTCCCTCTATaGACTCCTCATGCTGCACTG | + |
|
Preference number: 5 (lower is better) Translates to: GARYSSMYSFCLSYLASSQLLPL*TPHAAL Trigger: CAGTGCAGCATGAGGAGTCAATAGAGGGAGAAGCTG...TGATGAAGCCAGATATGAAAGGCAGAATGAATACATGCTTGAGTAACGTGCCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR CAA 90 bp | AAAAATAAATGTAACGGGGGCACGTTACTCAAGCATGTATTCATTCTGCCTTTCACAGCCTTGTCAGGTTaGGTCTCCATCACCCGCAGC | + |
|
Preference number: 5 (lower is better) Translates to: KNKCNGGTLLKHVFILPFTALSG*VSITRS Trigger: GCTGCGGGTGATGGAGACCAAACCTGACAAGGCTGT...GAAAGGCAGAATGAATACATGCTTGAGTAACGTGCCCCCGTTACATTTATTTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR CAA 90 bp | GGTTCTGGTTCAATCCTAGCACTTGAAAAACAGACAAACCATCAGAACCTTGGGGGTCTTTCTGGTTCTTaGTATCCCAAGGGAGCATCA | + |
|
Preference number: 5 (lower is better) Translates to: GSGSILALEKQTNHQNLGGLSGS*YPKGAS Trigger: TGATGCTCCCTTGGGATACAAAGAACCAGAAAGACC...CCCAAGGTTCTGATGGTTTGTCTGTTTTTCAAGTGCTAGGATTGAACCAGAACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR CAA 90 bp | CACGTTACTCAAGCATGTATTCATTCTGCCTTTCATATCTGGCTTCATCATGGACAGCTTCTCCCTCTATaGACTCCTCATGCTGCACTG | + |
|
Preference number: 5 (lower is better) Translates to: HVTQACIHSAFHIWLHHGQLLPL*TPHAAL Trigger: CAGTGCAGCATGAGGAGTCAATAGAGGGAGAAGCTG...TCCATGATGAAGCCAGATATGAAAGGCAGAATGAATACATGCTTGAGTAACGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR CAA 90 bp | GTCACTGTAAATAAAAACAGAGGCCATCTTTGTCTGGTACTCAAGTGCTGGCCTATAATGGATACAGCCTaGTCAGGTTTGGTCTCCATC | + |
|
Preference number: 5 (lower is better) Translates to: VTVNKNRGHLCLVLKCWPIMDTA*SGLVSI Trigger: GATGGAGACCAAACCTGACAAGGCTGTATCCATTAT...AGGCCAGCACTTGAGTACCAGACAAAGATGGCCTCTGTTTTTATTTACAGTGAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR CAA 90 bp | TTCATTCTGCCTTTCATATCTGGCTTCATCATGGAATTCACTGAGAGCGAGCAGAATACCGCTTTAGGGTaGGTAATATCCAGGAAGTCT | + |
|
Preference number: 5 (lower is better) Translates to: FILPFISGFIMEFTESEQNTALG*VISRKS Trigger: AGACTTCCTGGATATTACCAACCCTAAAGCGGTATT...CTGCTCGCTCTCAGTGAATTCCATGATGAAGCCAGATATGAAAGGCAGAATGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR CAA 90 bp | TTCATTCTGCCTTTCATATCTGGCTTCATCATGGAATTCACTGAGAGCGAGCAGTTAGGAATTCCTCTTTaGATGTCTCCAGGCTTGATT | + |
|
Preference number: 5 (lower is better) Translates to: FILPFISGFIMEFTESEQLGIPL*MSPGLI Trigger: AATCAAGCCTGGAGACATCAAAAGAGGAATTCCTAA...CTGCTCGCTCTCAGTGAATTCCATGATGAAGCCAGATATGAAAGGCAGAATGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR CAA 90 bp | GGTTCTGGTTCAATCCTAGCACTTGAAAAACAGACAAACCATCAGAACCTTGGGTTAGGAATTCCTCTTTaGATGTCTCCAGGCTTGATT | + |
|
Preference number: 5 (lower is better) Translates to: GSGSILALEKQTNHQNLGLGIPL*MSPGLI Trigger: AATCAAGCCTGGAGACATCAAAAGAGGAATTCCTAA...CCCAAGGTTCTGATGGTTTGTCTGTTTTTCAAGTGCTAGGATTGAACCAGAACC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR CAA 90 bp | TTCATTCTGCCTTTCATATCTGGCTTCATCATGGAATTCACTGAGAGCGAGCAGTCCTCTTCAACCTTTTaGACCAATGGACGTGAATTT | + |
|
Preference number: 5 (lower is better) Translates to: FILPFISGFIMEFTESEQSSSTF*TNGREF Trigger: AAATTCACGTCCATTGGTCAAAAAGGTTGAAGAGGA...CTGCTCGCTCTCAGTGAATTCCATGATGAAGCCAGATATGAAAGGCAGAATGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR CAA 90 bp | AAAAATAAATGTAACGGGGGCACGTTACTCAAGCATGTATTCATTCTGCCTTTCATAATGGATACAGCCTaGTCAGGTTTGGTCTCCATC | + |
|
Preference number: 5 (lower is better) Translates to: KNKCNGGTLLKHVFILPFIMDTA*SGLVSI Trigger: GATGGAGACCAAACCTGACAAGGCTGTATCCATTAT...GAAAGGCAGAATGAATACATGCTTGAGTAACGTGCCCCCGTTACATTTATTTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR CAA 90 bp | AAAAATAAATGTAACGGGGGCACGTTACTCAAGCATGTATTCATTCTGCCTTTCAATACCGCTTTAGGGTaGGTAATATCCAGGAAGTCT | + |
|
Preference number: 5 (lower is better) Translates to: KNKCNGGTLLKHVFILPFNTALG*VISRKS Trigger: AGACTTCCTGGATATTACCAACCCTAAAGCGGTATT...GAAAGGCAGAATGAATACATGCTTGAGTAACGTGCCCCCGTTACATTTATTTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR CAA 90 bp | CACGTTACTCAAGCATGTATTCATTCTGCCTTTCATATCTGGCTTCATCATGGATCCTCTTCAACCTTTTaGACCAATGGACGTGAATTT | + |
|
Preference number: 5 (lower is better) Translates to: HVTQACIHSAFHIWLHHGSSSTF*TNGREF Trigger: AAATTCACGTCCATTGGTCAAAAAGGTTGAAGAGGA...TCCATGATGAAGCCAGATATGAAAGGCAGAATGAATACATGCTTGAGTAACGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005394.13 ENSMUST00000115578.10 |
||
| CDS-3UTR CAA 90 bp | TTAACCCTCAATGTCTTGATTTTGGTCAATCTGGTTTCCTATGAGCATATGCACACCTCTTCAACCTTTTaGACCAATGGACGTGAATTT | + |
|
Preference number: 5 (lower is better) Translates to: LTLNVLILVNLVSYEHMHTSSTF*TNGREF Trigger: AAATTCACGTCCATTGGTCAAAAAGGTTGAAGAGGT...GTGCATATGCTCATAGGAAACCAGATTGACCAAAATCAAGACATTGAGGGTTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172451.2 |
||
| CDS-3UTR CAA 90 bp | AGTCACTGTATAGAAATGGTAAGGTCTAGTTCTAGGTTAGAAAGAACAGTGATATTAGGAATTCCTCTTTaGATGTCTCCAGGCTTGATT | + |
|
Preference number: 5 (lower is better) Translates to: SHCIEMVRSSSRLERTVILGIPL*MSPGLI Trigger: AATCAAGCCTGGAGACATCAAAAGAGGAATTCCTAA...TATCACTGTTCTTTCTAACCTAGAACTAGACCTTACCATTTCTATACAGTGACT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172451.2 |
||