Pregenerated sensors for UCN3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044988Ensembl transcript IDs: ENSMUST00000058610.8
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GAGGTATTTGGTATCAAGAGGGGGAGCTGTGCATCTCTGTGTCTCTaGCGAGGCTCAGACCAATGTGGGACAAGGAGGGAGCCTGAAAGC | + |
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Preference number: 1 (lower is better) Translates to: EVFGIKRGSCASLCL*RGSDQCGTRREPES Trigger: GCTTTCAGGCTCCCTCCTTGTCCCACATTGGTCTGAGCCTCGGCAGAGACACAGAGATGCACAGCTCCCCCTCTTGATACCAAATACCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| 3UTR TCA 90 bp | GACATGGTGACACCAGGGAGGAGCTTGGGAAGGAGGGGCACCACATaGACTTGTCTGTTGTTACAGGGAACCAGAAAGCAGACACAGGAT | + |
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Preference number: 1 (lower is better) Translates to: DMVTPGRSLGRRGTT*TCLLLQGTRKQTQD Trigger: ATCCTGTGTCTGCTTTCTGGTTCCCTGTAACAACAGACAAGTTCATGTGGTGCCCCTCCTTCCCAAGCTCCTCCCTGGTGTCACCATGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| 3UTR CCA 90 bp | ACTGGAAGCAAGAGAGGATCAGAGGGGCACAGTAGTGGAGCAGCCTaGGAAAACAGACTGTCCTTTGAAATTCGAGGGCACGTCCTCAGT | + |
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Preference number: 1 (lower is better) Translates to: TGSKRGSEGHSSGAA*ENRLSFEIRGHVLS Trigger: ACTGAGGACGTGCCCTCGAATTTCAAAGGACAGTCTGTTTTCCCAGGCTGCTCCACTACTGTGCCCCTCTGATCCTCTCTTGCTTCCAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| 3UTR CAA 90 bp | GGTGACACCAGGGAGGAGCTTGGGAAGGAGGGGCACCACATGAACTaGTCTGTTGTTACAGGGAACCAGAAAGCAGACACAGGATTCGGG | + |
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Preference number: 2 (lower is better) Translates to: GDTREELGKEGHHMN*SVVTGNQKADTGFG Trigger: CCCGAATCCTGTGTCTGCTTTCTGGTTCCCTGTAACAACAGACAAGTTCATGTGGTGCCCCTCCTTCCCAAGCTCCTCCCTGGTGTCACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| 3UTR-3UTR GCA 90 bp | GAGCTGTGCATCTCTGTGTCTCTGCCGAGGCTCAGACCAATGTGGGACAAGGAGCCTGAAAGCTCTCTCTaGAGACATGGTGACACCAGG | + |
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Preference number: 2 (lower is better) Translates to: ELCISVSLPRLRPMWDKEPESSL*RHGDTR Trigger: CCTGGTGTCACCATGTCTGCAGAGAGAGCTTTCAGG...CTCCTTGTCCCACATTGGTCTGAGCCTCGGCAGAGACACAGAGATGCACAGCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| 3UTR-3UTR TCA 90 bp | TGGGAAAACAGACTGTCCTTTGAAATTCGAGGGCACGTCCTCAGTTTCCTTTACCCGGGGCCCTTGTCTTaGTGTGCCACCCTCATGCCT | + |
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Preference number: 2 (lower is better) Translates to: WENRLSFEIRGHVLSFLYPGPLS*CATLMP Trigger: AGGCATGAGGGTGGCACATCAAGACAAGGGCCCCGG...GTAAAGGAAACTGAGGACGTGCCCTCGAATTTCAAAGGACAGTCTGTTTTCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| 3UTR-3UTR CCA 90 bp | GAGCTGTGCATCTCTGTGTCTCTGCCGAGGCTCAGACCAATGTGGGACAAGGAGAGTAGTGGAGCAGCCTaGGAAAACAGACTGTCCTTT | + |
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Preference number: 2 (lower is better) Translates to: ELCISVSLPRLRPMWDKESSGAA*ENRLSF Trigger: AAAGGACAGTCTGTTTTCCCAGGCTGCTCCACTACT...CTCCTTGTCCCACATTGGTCTGAGCCTCGGCAGAGACACAGAGATGCACAGCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| 3UTR CAA 90 bp | CAGAGGGGCACAGTAGTGGAGCAGCCTGGGAAAACAGACTGTCCTTaGAAATTCGAGGGCACGTCCTCAGTTTCCTTTACCCTTTACTCC | + |
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Preference number: 2 (lower is better) Translates to: QRGTVVEQPGKTDCP*KFEGTSSVSFTLYS Trigger: GGAGTAAAGGGTAAAGGAAACTGAGGACGTGCCCTCGAATTTCAAAGGACAGTCTGTTTTCCCAGGCTGCTCCACTACTGTGCCCCTCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| 3UTR GCA 72 bp | GGTATCAAGAGGGGGAGCTGTGCATCTCTGTGTCTCTaGCGAGGCTCAGACCAATGTGGGACAAGGAGGGAG | + |
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Preference number: 3 (lower is better) Translates to: GIKRGSCASLCL*RGSDQCGTRRE Trigger: CTCCCTCCTTGTCCCACATTGGTCTGAGCCTCGGCAGAGACACAGAGATGCACAGCTCCCCCTCTTGATACC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| 3UTR-3UTR CAA 90 bp | TGCATCTCTGTGTCTCTGCCGAGGCTCAGACCAATGTGGGACAAGGAGGGAGCCGGGCACCACATGAACTaGTCTGTTGTTACAGGGAAC | + |
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Preference number: 3 (lower is better) Translates to: CISVSLPRLRPMWDKEGAGHHMN*SVVTGN Trigger: GTTCCCTGTAACAACAGACAAGTTCATGTGGTGCCC...GGCTCCCTCCTTGTCCCACATTGGTCTGAGCCTCGGCAGAGACACAGAGATGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| 3UTR-3UTR CAA 90 bp | TGCCGAGGCTCAGACCAATGTGGGACAAGGAGGGAGCCTGAAAGCTCTCTCTGCAAAACAGACTGTCCTTaGAAATTCGAGGGCACGTCC | + |
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Preference number: 3 (lower is better) Translates to: CRGSDQCGTRREPESSLCKTDCP*KFEGTS Trigger: GGACGTGCCCTCGAATTTCAAAGGACAGTCTGTTTT...GCAGAGAGAGCTTTCAGGCTCCCTCCTTGTCCCACATTGGTCTGAGCCTCGGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| 3UTR TCA 72 bp | ACACCAGGGAGGAGCTTGGGAAGGAGGGGCACCACATaGACTTGTCTGTTGTTACAGGGAACCAGAAAGCAG | + |
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Preference number: 3 (lower is better) Translates to: TPGRSLGRRGTT*TCLLLQGTRKQ Trigger: CTGCTTTCTGGTTCCCTGTAACAACAGACAAGTTCATGTGGTGCCCCTCCTTCCCAAGCTCCTCCCTGGTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| 3UTR CCA 72 bp | AAGAGAGGATCAGAGGGGCACAGTAGTGGAGCAGCCTaGGAAAACAGACTGTCCTTTGAAATTCGAGGGCAC | + |
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Preference number: 3 (lower is better) Translates to: KRGSEGHSSGAA*ENRLSFEIRGH Trigger: GTGCCCTCGAATTTCAAAGGACAGTCTGTTTTCCCAGGCTGCTCCACTACTGTGCCCCTCTGATCCTCTCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS-3UTR CCA 90 bp | CAAGAGGGGGAGCTGTGCATCTCTGTGTCTCTGCCGAGGCTCAGACCAATGTGGTGCTGTGCCTGGGATTaGTATCTGTACCGGGTGCTC | + |
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Preference number: 4 (lower is better) Translates to: QEGELCISVSLPRLRPMWCCAWD*YLYRVL Trigger: GAGCACCCGGTACAGATACCAATCCCAGGCACAGCA...CCACATTGGTCTGAGCCTCGGCAGAGACACAGAGATGCACAGCTCCCCCTCTTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS-3UTR TCA 90 bp | TCTGCCGAGGCTCAGACCAATGTGGGACAAGGAGGGAGCCTGAAAGCTCTCTCTTCCCAATCTGTGCCATaGGCTGAGCATTGGCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: SAEAQTNVGQGGSLKALSSQSVP*AEHWQL Trigger: CAGCTGCCAATGCTCAGCTCATGGCACAGATTGGGA...AGAGAGAGCTTTCAGGCTCCCTCCTTGTCCCACATTGGTCTGAGCCTCGGCAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS-3UTR CCA 90 bp | GCATCTCTGTGTCTCTGCCGAGGCTCAGACCAATGTGGGACAAGGAGGGAGCCTGCTTTTGGGCTTGTCTaGGTACAGCTTCCCCTTGTG | + |
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Preference number: 4 (lower is better) Translates to: ASLCLCRGSDQCGTRREPAFGLV*VQLPLV Trigger: CACAAGGGGAAGCTGTACCCAGACAAGCCCAAAAGC...AGGCTCCCTCCTTGTCCCACATTGGTCTGAGCCTCGGCAGAGACACAGAGATGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS-3UTR CCA 90 bp | GTGGGACAAGGAGGGAGCCTGAAAGCTCTCTCTGCAGACATGGTGACACCAGGGCATTGGCAGCTGCCTTaGCTCGCAAATTCTTGGCCT | + |
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Preference number: 4 (lower is better) Translates to: VGQGGSLKALSADMVTPGHWQLP*LANSWP Trigger: AGGCCAAGAATTTGCGAGCCAAGGCAGCTGCCAATG...CCCTGGTGTCACCATGTCTGCAGAGAGAGCTTTCAGGCTCCCTCCTTGTCCCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS-3UTR GCA 90 bp | CAAGAGGGGGAGCTGTGCATCTCTGTGTCTCTGCCGAGGCTCAGACCAATGTGGGGCCAAAGCTCTTCTTaGTCAGCAAGGGCACATCTT | + |
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Preference number: 4 (lower is better) Translates to: QEGELCISVSLPRLRPMWGQSSS*SARAHL Trigger: AAGATGTGCCCTTGCTGAGCAAGAAGAGCTTTGGCC...CCACATTGGTCTGAGCCTCGGCAGAGACACAGAGATGCACAGCTCCCCCTCTTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS-3UTR TCA 90 bp | GAGCTGTGCATCTCTGTGTCTCTGCCGAGGCTCAGACCAATGTGGGACAAGGAGCCAGCTTGTTCTTCTTaGCCTCAGATAGGGCTGTGT | + |
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Preference number: 4 (lower is better) Translates to: ELCISVSLPRLRPMWDKEPACSS*PQIGLC Trigger: ACACAGCCCTATCTGAGGTCAAGAAGAACAAGCTGG...CTCCTTGTCCCACATTGGTCTGAGCCTCGGCAGAGACACAGAGATGCACAGCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS-3UTR TCA 90 bp | ACAGTAGTGGAGCAGCCTGGGAAAACAGACTGTCCTTTGAAATTCGAGGGCACGGTCATCTTCTTCCCCTaGGGGGTCTTGTGTGGGCAG | + |
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Preference number: 4 (lower is better) Translates to: TVVEQPGKTDCPLKFEGTVIFFP*GVLCGQ Trigger: CTGCCCACACAAGACCCCTCAGGGGAAGAAGATGAC...CGTGCCCTCGAATTTCAAAGGACAGTCTGTTTTCCCAGGCTGCTCCACTACTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS-3UTR GCA 90 bp | GAGCTGTGCATCTCTGTGTCTCTGCCGAGGCTCAGACCAATGTGGGACAAGGAGCTTCCCCTTGTGCTGTaGCTGGGATTGGTATCTGTA | + |
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Preference number: 4 (lower is better) Translates to: ELCISVSLPRLRPMWDKELPLVL*LGLVSV Trigger: TACAGATACCAATCCCAGGCACAGCACAAGGGGAAG...CTCCTTGTCCCACATTGGTCTGAGCCTCGGCAGAGACACAGAGATGCACAGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS-3UTR CCA 90 bp | CACGTCCTCAGTTTCCTTTACCCTTTACTCCGGGGCCCTTGTCTTGATGTGCCACCCTTGTGCTGTGCCTaGGATTGGTATCTGTACCGG | + |
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Preference number: 4 (lower is better) Translates to: HVLSFLYPLLRGPCLDVPPLCCA*DWYLYR Trigger: CCGGTACAGATACCAATCCCAGGCACAGCACAAGGG...TGGCACATCAAGACAAGGGCCCCGGAGTAAAGGGTAAAGGAAACTGAGGACGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS-3UTR TCA 90 bp | ACAGTAGTGGAGCAGCCTGGGAAAACAGACTGTCCTTTGAAATTCGAGGGCACGATCTGTGCCATGAGCTaGGCATTGGCAGCTGCCTTG | + |
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Preference number: 4 (lower is better) Translates to: TVVEQPGKTDCPLKFEGTICAMS*ALAAAL Trigger: CAAGGCAGCTGCCAATGCTCAGCTCATGGCACAGAT...CGTGCCCTCGAATTTCAAAGGACAGTCTGTTTTCCCAGGCTGCTCCACTACTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| 3UTR CAA 72 bp | AGGGAGGAGCTTGGGAAGGAGGGGCACCACATGAACTaGTCTGTTGTTACAGGGAACCAGAAAGCAGACACA | + |
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Preference number: 4 (lower is better) Translates to: REELGKEGHHMN*SVVTGNQKADT Trigger: TGTGTCTGCTTTCTGGTTCCCTGTAACAACAGACAAGTTCATGTGGTGCCCCTCCTTCCCAAGCTCCTCCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS-3UTR CCA 90 bp | GGGAAAACAGACTGTCCTTTGAAATTCGAGGGCACGTCCTCAGTTTCCTTTACCTGCCCCGGTCGCTTTTaGGCTTGTCTGGGTACAGCT | + |
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Preference number: 4 (lower is better) Translates to: GKTDCPLKFEGTSSVSFTCPGRF*ACLGTA Trigger: AGCTGTACCCAGACAAGCCCAAAAGCGACCGGGGCA...GGTAAAGGAAACTGAGGACGTGCCCTCGAATTTCAAAGGACAGTCTGTTTTCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| 3UTR CAA 72 bp | ACAGTAGTGGAGCAGCCTGGGAAAACAGACTGTCCTTaGAAATTCGAGGGCACGTCCTCAGTTTCCTTTACC | + |
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Preference number: 4 (lower is better) Translates to: TVVEQPGKTDCP*KFEGTSSVSFT Trigger: GGTAAAGGAAACTGAGGACGTGCCCTCGAATTTCAAAGGACAGTCTGTTTTCCCAGGCTGCTCCACTACTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS-3UTR GCA 90 bp | AAAACAGACTGTCCTTTGAAATTCGAGGGCACGTCCTCAGTTTCCTTTACCCTTCTTTTGATCTGGAGGTaGGTTTGGTTGTCATCTTCT | + |
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Preference number: 4 (lower is better) Translates to: KTDCPLKFEGTSSVSFTLLLIWR*VWLSSS Trigger: AGAAGATGACAACCAAACGCACCTCCAGATCAAAAG...AAGGGTAAAGGAAACTGAGGACGTGCCCTCGAATTTCAAAGGACAGTCTGTTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS CCA 90 bp | TTGGGCTTGTCTGGGTACAGCTTCCCCTTGTGCTGTGCCTGGGATTaGTATCTGTACCGGGTGCTCCCAGCTCCATTCCCACCCGCGGCA | + |
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Preference number: 5 (lower is better) Translates to: LGLSGYSFPLCCAWD*YLYRVLPAPFPPAA Trigger: TGCCGCGGGTGGGAATGGAGCTGGGAGCACCCGGTACAGATACCAATCCCAGGCACAGCACAAGGGGAAGCTGTACCCAGACAAGCCCAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS GCA 90 bp | CCGGTCGCTTTTGGGCTTGTCTGGGTACAGCTTCCCCTTGTGCTGTaGCTGGGATTGGTATCTGTACCGGGTGCTCCCAGCTCCATTCCC | + |
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Preference number: 5 (lower is better) Translates to: PVAFGLVWVQLPLVL*LGLVSVPGAPSSIP Trigger: GGGAATGGAGCTGGGAGCACCCGGTACAGATACCAATCCCAGGCACAGCACAAGGGGAAGCTGTACCCAGACAAGCCCAAAAGCGACCGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS-3UTR CAA 90 bp | GCTGTGCATCTCTGTGTCTCTGCCGAGGCTCAGACCAATGTGGGACAAGGAGGGCGGTCGCTTTTGGGCTaGTCTGGGTACAGCTTCCCC | + |
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Preference number: 5 (lower is better) Translates to: AVHLCVSAEAQTNVGQGGRSLLG*SGYSFP Trigger: GGGGAAGCTGTACCCAGACAAGCCCAAAAGCGACCG...CCCTCCTTGTCCCACATTGGTCTGAGCCTCGGCAGAGACACAGAGATGCACAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS CCA 90 bp | TCGCTTTTGGGCTTGTCTGGGTACAGCTTCCCCTTGTGCTGTGCCTaGGATTGGTATCTGTACCGGGTGCTCCCAGCTCCATTCCCACCC | + |
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Preference number: 5 (lower is better) Translates to: SLLGLSGYSFPLCCA*DWYLYRVLPAPFPP Trigger: GGGTGGGAATGGAGCTGGGAGCACCCGGTACAGATACCAATCCCAGGCACAGCACAAGGGGAAGCTGTACCCAGACAAGCCCAAAAGCGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS GCA 90 bp | ACAGCTTCCCCTTGTGCTGTGCCTGGGATTGGTATCTGTACCGGGTaGTCCCAGCTCCATTCCCACCCGCGGCACCTGAGAAAGTTCTTT | + |
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Preference number: 5 (lower is better) Translates to: TASPCAVPGIGICTG*SQLHSHPRHLRKFF Trigger: AAAGAACTTTCTCAGGTGCCGCGGGTGGGAATGGAGCTGGGAGCACCCGGTACAGATACCAATCCCAGGCACAGCACAAGGGGAAGCTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS-3UTR CAA 90 bp | CACCAGGGAGGAGCTTGGGAAGGAGGGGCACCACATGAACTTGTCTGTTGTTACGTGCTGTGCCTGGGATaGGTATCTGTACCGGGTGCT | + |
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Preference number: 5 (lower is better) Translates to: HQGGAWEGGAPHELVCCYVLCLG*VSVPGA Trigger: AGCACCCGGTACAGATACCAATCCCAGGCACAGCAC...GTAACAACAGACAAGTTCATGTGGTGCCCCTCCTTCCCAAGCTCCTCCCTGGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS-3UTR CAA 90 bp | GCTGTGCATCTCTGTGTCTCTGCCGAGGCTCAGACCAATGTGGGACAAGGAGGGTTGGCTCGCAAATTCTaGGCCTTGTCGATGTTGAAG | + |
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Preference number: 5 (lower is better) Translates to: AVHLCVSAEAQTNVGQGGLARKF*ALSMLK Trigger: CTTCAACATCGACAAGGCCAAGAATTTGCGAGCCAA...CCCTCCTTGTCCCACATTGGTCTGAGCCTCGGCAGAGACACAGAGATGCACAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS-3UTR CAA 90 bp | GAGGAAGTAGGGGAGGTATTTGGTATCAAGAGGGGGAGCTGTGCATCTCTGTGTACTTGTGGGAGAGGCTaGTCCTTGGACCTCCTAGGA | + |
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Preference number: 5 (lower is better) Translates to: EEVGEVFGIKRGSCASLCTCGRG*SLDLLG Trigger: TCCTAGGAGGTCCAAGGACAAGCCTCTCCCACAAGT...ACACAGAGATGCACAGCTCCCCCTCTTGATACCAAATACCTCCCCTACTTCCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS-3UTR CAA 90 bp | TGCCGAGGCTCAGACCAATGTGGGACAAGGAGGGAGCCTGAAAGCTCTCTCTGCTTGGCCTTGTCGATGTaGAAGAGGATGTTCATGATG | + |
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Preference number: 5 (lower is better) Translates to: CRGSDQCGTRREPESSLCLALSM*KRMFMM Trigger: CATCATGAACATCCTCTTCAACATCGACAAGGCCAA...GCAGAGAGAGCTTTCAGGCTCCCTCCTTGTCCCACATTGGTCTGAGCCTCGGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS-3UTR CAA 90 bp | GAGGAAGTAGGGGAGGTATTTGGTATCAAGAGGGGGAGCTGTGCATCTCTGTGTTCCAGCTTGTTCTTCTaGACCTCAGATAGGGCTGTG | + |
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Preference number: 5 (lower is better) Translates to: EEVGEVFGIKRGSCASLCSSLFF*TSDRAV Trigger: CACAGCCCTATCTGAGGTCAAGAAGAACAAGCTGGA...ACACAGAGATGCACAGCTCCCCCTCTTGATACCAAATACCTCCCCTACTTCCTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS-3UTR CAA 90 bp | CAGAGGGGCACAGTAGTGGAGCAGCCTGGGAAAACAGACTGTCCTTTGAAATTCCGCAAATTCTTGGCCTaGTCGATGTTGAAGAGGATG | + |
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Preference number: 5 (lower is better) Translates to: QRGTVVEQPGKTDCPLKFRKFLA*SMLKRM Trigger: CATCCTCTTCAACATCGACAAGGCCAAGAATTTGCG...GAATTTCAAAGGACAGTCTGTTTTCCCAGGCTGCTCCACTACTGTGCCCCTCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS GCA 90 bp | TTACTTCTTCTTCCCAATCTGTGCCATGAGCTGAGCATTGGCAGCTaGCTTGGCTCGCAAATTCTTGGCCTTGTCGATGTTGAAGAGGAT | + |
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Preference number: 5 (lower is better) Translates to: LLLLPNLCHELSIGS*LGSQILGLVDVEED Trigger: ATCCTCTTCAACATCGACAAGGCCAAGAATTTGCGAGCCAAGGCAGCTGCCAATGCTCAGCTCATGGCACAGATTGGGAAGAAGAAGTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS-3UTR CAA 90 bp | AAAACAGACTGTCCTTTGAAATTCGAGGGCACGTCCTCAGTTTCCTTTACCCTTTGGCCAAAGCTCTTCTaGCTCAGCAAGGGCACATCT | + |
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Preference number: 5 (lower is better) Translates to: KTDCPLKFEGTSSVSFTLWPKLF*LSKGTS Trigger: AGATGTGCCCTTGCTGAGCAAGAAGAGCTTTGGCCA...AAGGGTAAAGGAAACTGAGGACGTGCCCTCGAATTTCAAAGGACAGTCTGTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS CAA 90 bp | TTTGGGCTTGTCTGGGTACAGCTTCCCCTTGTGCTGTGCCTGGGATaGGTATCTGTACCGGGTGCTCCCAGCTCCATTCCCACCCGCGGC | + |
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Preference number: 6 (lower is better) Translates to: FGLVWVQLPLVLCLG*VSVPGAPSSIPTRG Trigger: GCCGCGGGTGGGAATGGAGCTGGGAGCACCCGGTACAGATACCAATCCCAGGCACAGCACAAGGGGAAGCTGTACCCAGACAAGCCCAAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS CCA 72 bp | GGCTTGTCTGGGTACAGCTTCCCCTTGTGCTGTGCCTaGGATTGGTATCTGTACCGGGTGCTCCCAGCTCCA | + |
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Preference number: 6 (lower is better) Translates to: GLSGYSFPLCCA*DWYLYRVLPAP Trigger: TGGAGCTGGGAGCACCCGGTACAGATACCAATCCCAGGCACAGCACAAGGGGAAGCTGTACCCAGACAAGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS CAA 90 bp | GTGGGAACATCAAGGGAAAGGGTGAACTTGGTGCCCCGGTCGCTTTaGGGCTTGTCTGGGTACAGCTTCCCCTTGTGCTGTGCCTGGGAT | + |
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Preference number: 6 (lower is better) Translates to: VGTSRERVNLVPRSL*GLSGYSFPLCCAWD Trigger: ATCCCAGGCACAGCACAAGGGGAAGCTGTACCCAGACAAGCCCAAAAGCGACCGGGGCACCAAGTTCACCCTTTCCCTTGATGTTCCCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS TCA 72 bp | CCGGGTGCTCCCAGCTCCATTCCCACCCGCGGCACCTaGGAAAGTTCTTTTGATCTGGAGGTGCGTTTGGTT | + |
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Preference number: 6 (lower is better) Translates to: PGAPSSIPTRGT*ESSFDLEVRLV Trigger: AACCAAACGCACCTCCAGATCAAAAGAACTTTCTCAGGTGCCGCGGGTGGGAATGGAGCTGGGAGCACCCGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS CAA 72 bp | CGGTCGCTTTTGGGCTTGTCTGGGTACAGCTTCCCCTaGTGCTGTGCCTGGGATTGGTATCTGTACCGGGTG | + |
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Preference number: 6 (lower is better) Translates to: RSLLGLSGYSFP*CCAWDWYLYRV Trigger: CACCCGGTACAGATACCAATCCCAGGCACAGCACAAGGGGAAGCTGTACCCAGACAAGCCCAAAAGCGACCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS GCA 72 bp | TCGCTTTTGGGCTTGTCTGGGTACAGCTTCCCCTTGTaGTGTGCCTGGGATTGGTATCTGTACCGGGTGCTC | + |
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Preference number: 6 (lower is better) Translates to: SLLGLSGYSFPL*CAWDWYLYRVL Trigger: GAGCACCCGGTACAGATACCAATCCCAGGCACAGCACAAGGGGAAGCTGTACCCAGACAAGCCCAAAAGCGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS CAA 72 bp | TCAAGGGAAAGGGTGAACTTGGTGCCCCGGTCGCTTTaGGGCTTGTCTGGGTACAGCTTCCCCTTGTGCTGT | + |
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Preference number: 6 (lower is better) Translates to: SRERVNLVPRSL*GLSGYSFPLCC Trigger: ACAGCACAAGGGGAAGCTGTACCCAGACAAGCCCAAAAGCGACCGGGGCACCAAGTTCACCCTTTCCCTTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS CAA 72 bp | GAGGGGTCTTGTGTGGGCAGGTGGCCAAAGCTCTTCTaGCTCAGCAAGGGCACATCTTCCAGCTTGTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: EGSCVGRWPKLF*LSKGTSSSLFF Trigger: GAAGAACAAGCTGGAAGATGTGCCCTTGCTGAGCAAGAAGAGCTTTGGCCACCTGCCCACACAAGACCCCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS CAA 90 bp | TCTTCCCCTGAGGGGTCTTGTGTGGGCAGGTGGCCAAAGCTCTTCTaGCTCAGCAAGGGCACATCTTCCAGCTTGTTCTTCTTGACCTCA | + |
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Preference number: 6 (lower is better) Translates to: SSPEGSCVGRWPKLF*LSKGTSSSLFFLTS Trigger: TGAGGTCAAGAAGAACAAGCTGGAAGATGTGCCCTTGCTGAGCAAGAAGAGCTTTGGCCACCTGCCCACACAAGACCCCTCAGGGGAAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS GCA 72 bp | AGGGGTCTTGTGTGGGCAGGTGGCCAAAGCTCTTCTTaGTCAGCAAGGGCACATCTTCCAGCTTGTTCTTCT | + |
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Preference number: 6 (lower is better) Translates to: RGLVWAGGQSSS*SARAHLPACSS Trigger: AGAAGAACAAGCTGGAAGATGTGCCCTTGCTGAGCAAGAAGAGCTTTGGCCACCTGCCCACACAAGACCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS GCA 72 bp | CTTCCCAATCTGTGCCATGAGCTGAGCATTGGCAGCTaGCTTGGCTCGCAAATTCTTGGCCTTGTCGATGTT | + |
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Preference number: 6 (lower is better) Translates to: LPNLCHELSIGS*LGSQILGLVDV Trigger: AACATCGACAAGGCCAAGAATTTGCGAGCCAAGGCAGCTGCCAATGCTCAGCTCATGGCACAGATTGGGAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS CAA 72 bp | ATGATGTTAGTGGGAACATCAAGGGAAAGGGTGAACTaGGTGCCCCGGTCGCTTTTGGGCTTGTCTGGGTAC | + |
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Preference number: 6 (lower is better) Translates to: MMLVGTSRERVN*VPRSLLGLSGY Trigger: GTACCCAGACAAGCCCAAAAGCGACCGGGGCACCAAGTTCACCCTTTCCCTTGATGTTCCCACTAACATCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS CAA 90 bp | AGGTGGCCAAAGCTCTTCTTGCTCAGCAAGGGCACATCTTCCAGCTaGTTCTTCTTGACCTCAGATAGGGCTGTGTTGAGGCAGCTGAAG | + |
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Preference number: 6 (lower is better) Translates to: RWPKLFLLSKGTSSS*FFLTSDRAVLRQLK Trigger: CTTCAGCTGCCTCAACACAGCCCTATCTGAGGTCAAGAAGAACAAGCTGGAAGATGTGCCCTTGCTGAGCAAGAAGAGCTTTGGCCACCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS CAA 72 bp | AAGCTCTTCTTGCTCAGCAAGGGCACATCTTCCAGCTaGTTCTTCTTGACCTCAGATAGGGCTGTGTTGAGG | + |
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Preference number: 6 (lower is better) Translates to: KLFLLSKGTSSS*FFLTSDRAVLR Trigger: CCTCAACACAGCCCTATCTGAGGTCAAGAAGAACAAGCTGGAAGATGTGCCCTTGCTGAGCAAGAAGAGCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS CAA 90 bp | GCATTGGCAGCTGCCTTGGCTCGCAAATTCTTGGCCTTGTCGATGTaGAAGAGGATGTTCATGATGTTAGTGGGAACATCAAGGGAAAGG | + |
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Preference number: 6 (lower is better) Translates to: ALAAALARKFLALSM*KRMFMMLVGTSRER Trigger: CCTTTCCCTTGATGTTCCCACTAACATCATGAACATCCTCTTCAACATCGACAAGGCCAAGAATTTGCGAGCCAAGGCAGCTGCCAATGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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| CDS CAA 72 bp | GCATTGGCAGCTGCCTTGGCTCGCAAATTCTTGGCCTaGTCGATGTTGAAGAGGATGTTCATGATGTTAGTG | + |
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Preference number: 6 (lower is better) Translates to: ALAAALARKFLA*SMLKRMFMMLV Trigger: CACTAACATCATGAACATCCTCTTCAACATCGACAAGGCCAAGAATTTGCGAGCCAAGGCAGCTGCCAATGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058610.8 |
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