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Pregenerated sensors for UCN2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000049699

Ensembl transcript IDs: ENSMUST00000052724.5

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AAGGCATCAGATCCCCTTATAGATAGTTGTGAGCCACCAGGTGGTTaGTGGGAACTGAACTCAGGACCTCTGGAAGAGCAACTAGGGCTC +
Preference number: 1 (lower is better)
Translates to: KASDPLIDSCEPPGG*WELNSGPLEEQLGL
Trigger: GAGCCCTAGTTGCTCTTCCAGAGGTCCTGAGTTCAGTTCCCAGCAACCACCTGGTGGCTCACAACTATCTATAAGGGGATCTGATGCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052724.5
3UTR CCA 90 bp GCATCAGATCCCCTTATAGATAGTTGTGAGCCACCAGGTGGTTGCTaGGAACTGAACTCAGGACCTCTGGAAGAGCAACTAGGGCTCATA +
Preference number: 1 (lower is better)
Translates to: ASDPLIDSCEPPGGC*ELNSGPLEEQLGLI
Trigger: TATGAGCCCTAGTTGCTCTTCCAGAGGTCCTGAGTTCAGTTCCCAGCAACCACCTGGTGGCTCACAACTATCTATAAGGGGATCTGATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052724.5
3UTR TCA 90 bp TTACATTTAAGGATGGAGCTCACATGGTGGTATCTAGATGCTCTGTaGCTGCCAGACTCAGCTAGACATGACAAGATTACATATATTGAA +
Preference number: 1 (lower is better)
Translates to: LHLRMELTWWYLDAL*LPDSARHDKITYIE
Trigger: TTCAATATATGTAATCTTGTCATGTCTAGCTGAGTCTGGCAGTCACAGAGCATCTAGATACCACCATGTGAGCTCCATCCTTAAATGTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052724.5
3UTR-3UTR TCA 90 bp AGTTGTGAGCCACCAGGTGGTTGCTGGGAACTGAACTCAGGACCTCTGGAAGAGACTGGGGTTCTATGTTaGCTCTCCTTTACATTTAAG +
Preference number: 2 (lower is better)
Translates to: SCEPPGGCWELNSGPLEETGVLC*LSFTFK
Trigger: CTTAAATGTAAAGGAGAGTCAACATAGAACCCCAGT...CTCTTCCAGAGGTCCTGAGTTCAGTTCCCAGCAACCACCTGGTGGCTCACAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052724.5
3UTR-3UTR TCA 90 bp TATACTTCCATAGGCCAGAAGAAGGCATCAGATCCCCTTATAGATAGTTGTGAGCACAAAACAAGCATGTaGCCCCCTCCAGCACTCTCT +
Preference number: 2 (lower is better)
Translates to: YTSIGQKKASDPLIDSCEHKTSM*PPPALS
Trigger: AGAGAGTGCTGGAGGGGGTCACATGCTTGTTTTGTG...CTCACAACTATCTATAAGGGGATCTGATGCCTTCTTCTGGCCTATGGAAGTATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000052724.5
3UTR CCA 72 bp GCAGTGGTCCATCTCGGTGATCTCTGGGTATGTGTTTaGCCAAATGTAGTACTGTCCAGCTTTGTGGCTGTC +
Preference number: 3 (lower is better)
Translates to: AVVHLGDLWVCV*PNVVLSSFVAV
Trigger: GACAGCCACAAAGCTGGACAGTACTACATTTGGCCAAACACATACCCAGAGATCACCGAGATGGACCACTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052724.5
3UTR CCA 72 bp CCCCTTATAGATAGTTGTGAGCCACCAGGTGGTTGCTaGGAACTGAACTCAGGACCTCTGGAAGAGCAACTA +
Preference number: 3 (lower is better)
Translates to: PLIDSCEPPGGC*ELNSGPLEEQL
Trigger: TAGTTGCTCTTCCAGAGGTCCTGAGTTCAGTTCCCAGCAACCACCTGGTGGCTCACAACTATCTATAAGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052724.5
3UTR-3UTR CAA 90 bp CTGGAAGAGCAACTAGGGCTCATAACCTCTGAGCCATCTCACCAGCCCAAGACTTCTCTGGGTATGTGTTaGGCCAAATGTAGTACTGTC +
Preference number: 3 (lower is better)
Translates to: LEEQLGLITSEPSHQPKTSLGMC*AKCSTV
Trigger: GACAGTACTACATTTGGCCAAACACATACCCAGAGA...AGTCTTGGGCTGGTGAGATGGCTCAGAGGTTATGAGCCCTAGTTGCTCTTCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052724.5
3UTR TCA 72 bp AGGATGGAGCTCACATGGTGGTATCTAGATGCTCTGTaGCTGCCAGACTCAGCTAGACATGACAAGATTACA +
Preference number: 3 (lower is better)
Translates to: RMELTWWYLDAL*LPDSARHDKIT
Trigger: TGTAATCTTGTCATGTCTAGCTGAGTCTGGCAGTCACAGAGCATCTAGATACCACCATGTGAGCTCCATCCT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052724.5
CDS-3UTR TCA 90 bp GCCAAATGTAGTACTGTCCAGCTTTGTGGCTGTCCTCCAGAACTTCTCATCCAGGTCTCCAGAGAGTTCTaGGGGAGGAGCTGGAAGGTG +
Preference number: 4 (lower is better)
Translates to: AKCSTVQLCGCPPELLIQVSREF*GRSWKV
Trigger: CACCTTCCAGCTCCTCCCTCAGAACTCTCTGGAGAC...CTGGATGAGAAGTTCTGGAGGACAGCCACAAAGCTGGACAGTACTACATTTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052724.5
CDS-3UTR CCA 90 bp TATACTTCCATAGGCCAGAAGAAGGCATCAGATCCCCTTATAGATAGTTGTGAGTCCGTAGGAGGCCAATaGGAACATCCAGGGAGAGTA +
Preference number: 4 (lower is better)
Translates to: YTSIGQKKASDPLIDSCESVGGQ*EHPGRV
Trigger: TACTCTCCCTGGATGTTCCCATTGGCCTCCTACGGA...CTCACAACTATCTATAAGGGGATCTGATGCCTTCTTCTGGCCTATGGAAGTATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052724.5
3UTR CAA 72 bp CTATATGGCCAAGCTGTAGAAACACACTGTAGATACTaGGAAGCTATGGCAGTGGTCCATCTCGGTGATCTC +
Preference number: 4 (lower is better)
Translates to: LYGQAVETHCRY*EAMAVVHLGDL
Trigger: GAGATCACCGAGATGGACCACTGCCATAGCTTCCAAGTATCTACAGTGTGTTTCTACAGCTTGGCCATATAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052724.5
CDS-3UTR CAA 90 bp ATAACCTCTGAGCCATCTCACCAGCCCAAGACTGTCTTTAAAAACAAAAACAAGGGGCTGGCTTTAGAGTaGCTCCAGGAAGCTGAGGGT +
Preference number: 5 (lower is better)
Translates to: ITSEPSHQPKTVFKNKNKGLALE*LQEAEG
Trigger: ACCCTCAGCTTCCTGGAGCAACTCTAAAGCCAGCCC...CTTGTTTTTGTTTTTAAAGACAGTCTTGGGCTGGTGAGATGGCTCAGAGGTTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000052724.5