Pregenerated sensors for UCN (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038676

Ensembl transcript IDs: ENSMUST00000043475.7, ENSMUST00000201184.2

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CCGCACTCCAGGGCTCCATCGCAGATTCGGATCCTGGACCCCAGTTaGCGCCGCAGCCGCTGGGCTCCACTGGCTGCTCTCCGGGCGAAG	+
Preference number: 5 (lower is better) Translates to: PHSRAPSQIRILDPS*RRSRWAPLAALRAK Trigger: CTTCGCCCGGAGAGCAGCCAGTGGAGCCCAGCGGCTGCGGCGGCAACTGGGGTCCAGGATCCGAATCTGCGATGGAGCCCTGGAGTGCGG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043475.7 ENSMUST00000201184.2
CDS CCA 90 bp	CTCCAGCAGGGTCCGCAGCAGGTGGAAGGTGAGGTCGATGGACAGTaGAGGGTCGTCCCGTCGCTGCCGCTCGCCCGCAGGCTCAGATCC	+
Preference number: 5 (lower is better) Translates to: LQQGPQQVEGEVDGQ*RVVPSLPLARRLRS Trigger: GGATCTGAGCCTGCGGGCGAGCGGCAGCGACGGGACGACCCTCCACTGTCCATCGACCTCACCTTCCACCTGCTGCGGACCCTGCTGGAG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043475.7 ENSMUST00000201184.2
CDS CCA 90 bp	CCATCGCAGATTCGGATCCTGGACCCCAGTTGCCGCCGCAGCCGCTaGGCTCCACTGGCTGCTCTCCGGGCGAAGCTGTGCCAAGAGCAG	+
Preference number: 5 (lower is better) Translates to: PSQIRILDPSCRRSR*APLAALRAKLCQEQ Trigger: CTGCTCTTGGCACAGCTTCGCCCGGAGAGCAGCCAGTGGAGCCCAGCGGCTGCGGCGGCAACTGGGGTCCAGGATCCGAATCTGCGATGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043475.7 ENSMUST00000201184.2
CDS TCA 90 bp	AAGCGCTCCGCTAACAGCAAGAGGAGCGCGCGGACGCCGCCGCCCTaGTTCCGCACTCCAGGGCTCCATCGCAGATTCGGATCCTGGACC	+
Preference number: 5 (lower is better) Translates to: KRSANSKRSARTPPP*FRTPGLHRRFGSWT Trigger: GGTCCAGGATCCGAATCTGCGATGGAGCCCTGGAGTGCGGAATCAGGGCGGCGGCGTCCGCGCGCTCCTCTTGCTGTTAGCGGAGCGCTT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043475.7 ENSMUST00000201184.2
CDS TCA 90 bp	TCTGTGTCCGAGCTAGCTCCAGCAGGGTCCGCAGCAGGTGGAAGGTaGGGTCGATGGACAGTGGAGGGTCGTCCCGTCGCTGCCGCTCGC	+
Preference number: 5 (lower is better) Translates to: SVSELAPAGSAAGGR*GRWTVEGRPVAAAR Trigger: GCGAGCGGCAGCGACGGGACGACCCTCCACTGTCCATCGACCTCACCTTCCACCTGCTGCGGACCCTGCTGGAGCTAGCTCGGACACAGA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043475.7 ENSMUST00000201184.2
CDS CCA 90 bp	CGCTGGCTCTGTGTCCGAGCTAGCTCCAGCAGGGTCCGCAGCAGGTaGAAGGTGAGGTCGATGGACAGTGGAGGGTCGTCCCGTCGCTGC	+
Preference number: 5 (lower is better) Translates to: RWLCVRASSSRVRSR*KVRSMDSGGSSRRC Trigger: GCAGCGACGGGACGACCCTCCACTGTCCATCGACCTCACCTTCCACCTGCTGCGGACCCTGCTGGAGCTAGCTCGGACACAGAGCCAGCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043475.7 ENSMUST00000201184.2
CDS CCA 90 bp	CCCACCGAATCGAATATGATGCGGTTCTGCTCTGCGCGCTCGCGCTaGCTCTGTGTCCGAGCTAGCTCCAGCAGGGTCCGCAGCAGGTGG	+
Preference number: 5 (lower is better) Translates to: PTESNMMRFCSARSR*LCVRASSSRVRSRW Trigger: CCACCTGCTGCGGACCCTGCTGGAGCTAGCTCGGACACAGAGCCAGCGCGAGCGCGCAGAGCAGAACCGCATCATATTCGATTCGGTGGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043475.7 ENSMUST00000201184.2
CDS GCA 72 bp	GTGAGGTCGATGGACAGTGGAGGGTCGTCCCGTCGCTaGCGCTCGCCCGCAGGCTCAGATCCTGCGCGGCGC	+
Preference number: 6 (lower is better) Translates to: VRSMDSGGSSRR*RSPAGSDPARR Trigger: GCGCCGCGCAGGATCTGAGCCTGCGGGCGAGCGGCAGCGACGGGACGACCCTCCACTGTCCATCGACCTCAC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043475.7 ENSMUST00000201184.2
CDS GCA 72 bp	CCCCAGTTGCCGCCGCAGCCGCTGGGCTCCACTGGCTaGTCTCCGGGCGAAGCTGTGCCAAGAGCAGCAACG	+
Preference number: 6 (lower is better) Translates to: PQLPPQPLGSTG*SPGEAVPRAAT Trigger: CGTTGCTGCTCTTGGCACAGCTTCGCCCGGAGAGCAGCCAGTGGAGCCCAGCGGCTGCGGCGGCAACTGGGG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043475.7 ENSMUST00000201184.2
CDS CCA 72 bp	GGTCCGCAGCAGGTGGAAGGTGAGGTCGATGGACAGTaGAGGGTCGTCCCGTCGCTGCCGCTCGCCCGCAGG	+
Preference number: 6 (lower is better) Translates to: GPQQVEGEVDGQ*RVVPSLPLARR Trigger: CCTGCGGGCGAGCGGCAGCGACGGGACGACCCTCCACTGTCCATCGACCTCACCTTCCACCTGCTGCGGACC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043475.7 ENSMUST00000201184.2
CDS CAA 90 bp	TCCGCACTCCAGGGCTCCATCGCAGATTCGGATCCTGGACCCCAGTaGCCGCCGCAGCCGCTGGGCTCCACTGGCTGCTCTCCGGGCGAA	+
Preference number: 6 (lower is better) Translates to: SALQGSIADSDPGPQ*PPQPLGSTGCSPGE Trigger: TTCGCCCGGAGAGCAGCCAGTGGAGCCCAGCGGCTGCGGCGGCAACTGGGGTCCAGGATCCGAATCTGCGATGGAGCCCTGGAGTGCGGA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043475.7 ENSMUST00000201184.2
CDS GCA 72 bp	CGCTGGGCTCCACTGGCTGCTCTCCGGGCGAAGCTGTaGCAAGAGCAGCAACGCCACCAGGAGCGTAGCGCG	+
Preference number: 6 (lower is better) Translates to: RWAPLAALRAKL*QEQQRHQERSA Trigger: CGCGCTACGCTCCTGGTGGCGTTGCTGCTCTTGGCACAGCTTCGCCCGGAGAGCAGCCAGTGGAGCCCAGCG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043475.7 ENSMUST00000201184.2
CDS CCA 72 bp	ATTCGGATCCTGGACCCCAGTTGCCGCCGCAGCCGCTaGGCTCCACTGGCTGCTCTCCGGGCGAAGCTGTGC	+
Preference number: 6 (lower is better) Translates to: IRILDPSCRRSR*APLAALRAKLC Trigger: GCACAGCTTCGCCCGGAGAGCAGCCAGTGGAGCCCAGCGGCTGCGGCGGCAACTGGGGTCCAGGATCCGAAT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043475.7 ENSMUST00000201184.2
CDS GCA 72 bp	AGGGCTCCATCGCAGATTCGGATCCTGGACCCCAGTTaGCGCCGCAGCCGCTGGGCTCCACTGGCTGCTCTC	+
Preference number: 6 (lower is better) Translates to: RAPSQIRILDPS*RRSRWAPLAAL Trigger: GAGAGCAGCCAGTGGAGCCCAGCGGCTGCGGCGGCAACTGGGGTCCAGGATCCGAATCTGCGATGGAGCCCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043475.7 ENSMUST00000201184.2
CDS TCA 72 bp	GCTAACAGCAAGAGGAGCGCGCGGACGCCGCCGCCCTaGTTCCGCACTCCAGGGCTCCATCGCAGATTCGGA	+
Preference number: 6 (lower is better) Translates to: ANSKRSARTPPP*FRTPGLHRRFG Trigger: TCCGAATCTGCGATGGAGCCCTGGAGTGCGGAATCAGGGCGGCGGCGTCCGCGCGCTCCTCTTGCTGTTAGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043475.7 ENSMUST00000201184.2
CDS CCA 72 bp	TCGAATATGATGCGGTTCTGCTCTGCGCGCTCGCGCTaGCTCTGTGTCCGAGCTAGCTCCAGCAGGGTCCGC	+
Preference number: 6 (lower is better) Translates to: SNMMRFCSARSR*LCVRASSSRVR Trigger: GCGGACCCTGCTGGAGCTAGCTCGGACACAGAGCCAGCGCGAGCGCGCAGAGCAGAACCGCATCATATTCGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043475.7 ENSMUST00000201184.2

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