Pregenerated sensors for UCMA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026668Ensembl transcript IDs: ENSMUST00000027978.7, ENSMUST00000115010.9, ENSMUST00000167607.8, ENSMUST00000195688.2
Found 36 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGGGCGGTGAGGGAGCTTCACCTTGTGGGTCCGTCTGTGGAGAGGTaGCAGGCCTGTCACATGCTTCTCTTCCCCGGTTGCTTTAATGAG | + |
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Preference number: 1 (lower is better) Translates to: RAVRELHLVGPSVER*QACHMLLFPGCFNE Trigger: CTCATTAAAGCAACCGGGGAAGAGAAGCATGTGACAGGCCTGCCACCTCTCCACAGACGGACCCACAAGGTGAAGCTCCCTCACCGCCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000027978.7 ENSMUST00000115010.9 ENSMUST00000167607.8 ENSMUST00000195688.2 |
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| 3UTR TCA 90 bp | AACCTTTATGCTTCGATCCTGAAAGTGTCTATCAGATGGGTGCTCTaGTTCTGTTTCTGGTGGCTAAGCAAGGGGGCAGGTGCTGGGAAG | + |
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Preference number: 1 (lower is better) Translates to: NLYASILKVSIRWVL*FCFWWLSKGAGAGK Trigger: CTTCCCAGCACCTGCCCCCTTGCTTAGCCACCAGAAACAGAATCAGAGCACCCATCTGATAGACACTTTCAGGATCGAAGCATAAAGGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000027978.7 ENSMUST00000115010.9 ENSMUST00000167607.8 |
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| 3UTR-3UTR GCA 90 bp | GGTGTCTTTCCTGGAGCTGTTGACCAGGGCGGTGAGGGAGCTTCACCTTGTGGGGGCAGGCCTGTCACATaGTTCTCTTCCCCGGTTGCT | + |
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Preference number: 2 (lower is better) Translates to: GVFPGAVDQGGEGASPCGGRPVT*FSSPVA Trigger: AGCAACCGGGGAAGAGAAGCATGTGACAGGCCTGCC...CCCACAAGGTGAAGCTCCCTCACCGCCCTGGTCAACAGCTCCAGGAAAGACACC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000027978.7 ENSMUST00000115010.9 ENSMUST00000167607.8 ENSMUST00000195688.2 |
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| 3UTR-3UTR GCA 90 bp | TCTTTCCTGGAGCTGTTGACCAGGGCGGTGAGGGAGCTTCACCTTGTGGGTCCGGGCAGGCCTGTCACATaGTTCTCTTCCCCGGTTGCT | + |
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Preference number: 2 (lower is better) Translates to: SFLELLTRAVRELHLVGPGRPVT*FSSPVA Trigger: AGCAACCGGGGAAGAGAAGCATGTGACAGGCCTGCC...CGGACCCACAAGGTGAAGCTCCCTCACCGCCCTGGTCAACAGCTCCAGGAAAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000027978.7 ENSMUST00000115010.9 ENSMUST00000167607.8 ENSMUST00000195688.2 |
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| 3UTR-3UTR CCA 90 bp | GGTGTCTTTCCTGGAGCTGTTGACCAGGGCGGTGAGGGAGCTTCACCTTGTGGGCCGTCTGTGGAGAGGTaGCAGGCCTGTCACATGCTT | + |
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Preference number: 2 (lower is better) Translates to: GVFPGAVDQGGEGASPCGPSVER*QACHML Trigger: AAGCATGTGACAGGCCTGCCACCTCTCCACAGACGG...CCCACAAGGTGAAGCTCCCTCACCGCCCTGGTCAACAGCTCCAGGAAAGACACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000027978.7 ENSMUST00000115010.9 ENSMUST00000167607.8 ENSMUST00000195688.2 |
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| 3UTR-3UTR CCA 90 bp | ATCAGAACAGAGGGTGTCTTTCCTGGAGCTGTTGACCAGGGCGGTGAGGGAGCTCCGTCTGTGGAGAGGTaGCAGGCCTGTCACATGCTT | + |
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Preference number: 2 (lower is better) Translates to: IRTEGVFPGAVDQGGEGAPSVER*QACHML Trigger: AAGCATGTGACAGGCCTGCCACCTCTCCACAGACGG...AGCTCCCTCACCGCCCTGGTCAACAGCTCCAGGAAAGACACCCTCTGTTCTGAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000027978.7 ENSMUST00000115010.9 ENSMUST00000167607.8 ENSMUST00000195688.2 |
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| 3UTR-3UTR GCA 90 bp | TTATGCTTCGATCCTGAAAGTGTCTATCAGATGGGTGCTCTGATTCTGTTTCTGGGCAGGCCTGTCACATaGTTCTCTTCCCCGGTTGCT | + |
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Preference number: 2 (lower is better) Translates to: LCFDPESVYQMGALILFLGRPVT*FSSPVA Trigger: AGCAACCGGGGAAGAGAAGCATGTGACAGGCCTGCC...CAGAAACAGAATCAGAGCACCCATCTGATAGACACTTTCAGGATCGAAGCATAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027978.7 ENSMUST00000115010.9 ENSMUST00000167607.8 |
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| 3UTR-3UTR GCA 90 bp | TTATGCTTCGATCCTGAAAGTGTCTATCAGATGGGTGCTCTGATTCTGTTTCTGAGAACCACAGATGGTTaGTCACTCAAAAACAAAACA | + |
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Preference number: 2 (lower is better) Translates to: LCFDPESVYQMGALILFLRTTDG*SLKNKT Trigger: TGTTTTGTTTTTGAGTGAGCAACCATCTGTGGTTCT...CAGAAACAGAATCAGAGCACCCATCTGATAGACACTTTCAGGATCGAAGCATAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000027978.7 ENSMUST00000115010.9 ENSMUST00000167607.8 |
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| 3UTR CCA 72 bp | AGGGAGCTTCACCTTGTGGGTCCGTCTGTGGAGAGGTaGCAGGCCTGTCACATGCTTCTCTTCCCCGGTTGC | + |
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Preference number: 3 (lower is better) Translates to: RELHLVGPSVER*QACHMLLFPGC Trigger: GCAACCGGGGAAGAGAAGCATGTGACAGGCCTGCCACCTCTCCACAGACGGACCCACAAGGTGAAGCTCCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000027978.7 ENSMUST00000115010.9 ENSMUST00000167607.8 ENSMUST00000195688.2 |
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| 3UTR GCA 72 bp | CTGATTCTGTTTCTGGTGGCTAAGCAAGGGGGCAGGTaGTGGGAAGAACCACAGATGGTTGCTCACTCAAAA | + |
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Preference number: 3 (lower is better) Translates to: LILFLVAKQGGR*WEEPQMVAHSK Trigger: TTTTGAGTGAGCAACCATCTGTGGTTCTTCCCAGCACCTGCCCCCTTGCTTAGCCACCAGAAACAGAATCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000027978.7 ENSMUST00000115010.9 ENSMUST00000167607.8 |
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| CDS-3UTR GCA 90 bp | CCTTGTGGGTCCGTCTGTGGAGAGGTGGCAGGCCTGTCACATGCTTCTCTTCCCCCCTCTGCAGCTGCCTaGCTGCTCCCCACAGAAGCG | + |
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Preference number: 4 (lower is better) Translates to: PCGSVCGEVAGLSHASLPPSAAA*LLPTEA Trigger: CGCTTCTGTGGGGAGCAGGCAGGCAGCTGCAGAGGG...GGGAAGAGAAGCATGTGACAGGCCTGCCACCTCTCCACAGACGGACCCACAAGG 63% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000115010.9 ENSMUST00000167607.8 |
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| CDS-3UTR GCA 90 bp | TTCACCTTGTGGGTCCGTCTGTGGAGAGGTGGCAGGCCTGTCACATGCTTCTCTCCCTCTGCAGCTGCCTaGCTGCTCCCCACAGAAGCG | + |
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Preference number: 4 (lower is better) Translates to: FTLWVRLWRGGRPVTCFSPSAAA*LLPTEA Trigger: CGCTTCTGTGGGGAGCAGGCAGGCAGCTGCAGAGGG...AGAGAAGCATGTGACAGGCCTGCCACCTCTCCACAGACGGACCCACAAGGTGAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115010.9 ENSMUST00000167607.8 |
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| CDS-3UTR TCA 90 bp | CCTGGAGCTGTTGACCAGGGCGGTGAGGGAGCTTCACCTTGTGGGTCCGTCTGTCAGGGCCAAGAGAGATaGCAGGAGAATGACCCGTCT | + |
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Preference number: 4 (lower is better) Translates to: PGAVDQGGEGASPCGSVCQGQER*QENDPS Trigger: AGACGGGTCATTCTCCTGTCATCTCTCTTGGCCCTG...ACAGACGGACCCACAAGGTGAAGCTCCCTCACCGCCCTGGTCAACAGCTCCAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000027978.7 ENSMUST00000115010.9 ENSMUST00000167607.8 ENSMUST00000195688.2 |
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| CDS-3UTR TCA 90 bp | GGAGCTGTTGACCAGGGCGGTGAGGGAGCTTCACCTTGTGGGTCCGTCTGTGGACAGGGCCAAGAGAGATaGCAGGAGAATGACCCGTCT | + |
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Preference number: 4 (lower is better) Translates to: GAVDQGGEGASPCGSVCGQGQER*QENDPS Trigger: AGACGGGTCATTCTCCTGTCATCTCTCTTGGCCCTG...TCCACAGACGGACCCACAAGGTGAAGCTCCCTCACCGCCCTGGTCAACAGCTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000027978.7 ENSMUST00000115010.9 ENSMUST00000167607.8 ENSMUST00000195688.2 |
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| CDS-3UTR GCA 90 bp | CTGGAGCTGTTGACCAGGGCGGTGAGGGAGCTTCACCTTGTGGGTCCGTCTGTGCGGGTCCTCTCTTCCTaGTCATCTCTCTGTTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: LELLTRAVRELHLVGPSVRVLSS*SSLCSS Trigger: GGAGGAACAGAGAGATGAGCAGGAAGAGAGGACCCG...CACAGACGGACCCACAAGGTGAAGCTCCCTCACCGCCCTGGTCAACAGCTCCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027978.7 ENSMUST00000115010.9 |
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| CDS-3UTR TCA 90 bp | AGGGTGTCTTTCCTGGAGCTGTTGACCAGGGCGGTGAGGGAGCTTCACCTTGTGCAGGGCCAAGAGAGATaGCAGGAGAATGACCCGTCT | + |
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Preference number: 4 (lower is better) Translates to: RVSFLELLTRAVRELHLVQGQER*QENDPS Trigger: AGACGGGTCATTCTCCTGTCATCTCTCTTGGCCCTG...CACAAGGTGAAGCTCCCTCACCGCCCTGGTCAACAGCTCCAGGAAAGACACCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000027978.7 ENSMUST00000115010.9 ENSMUST00000167607.8 ENSMUST00000195688.2 |
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| CDS-3UTR GCA 90 bp | TCAGAAGGCATCAGAACAGAGGGTGTCTTTCCTGGAGCTGTTGACCAGGGCGGTCGGGTCCTCTCTTCCTaGTCATCTCTCTGTTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: SEGIRTEGVFPGAVDQGGRVLSS*SSLCSS Trigger: GGAGGAACAGAGAGATGAGCAGGAAGAGAGGACCCG...ACCGCCCTGGTCAACAGCTCCAGGAAAGACACCCTCTGTTCTGATGCCTTCTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027978.7 ENSMUST00000115010.9 |
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| CDS-3UTR TCA 90 bp | ATAAAGAAGCAAAAGCCACGCATCAGAAGGCATCAGAACAGAGGGTGTCTTTCCCAGGGCCAAGAGAGATaGCAGGAGAATGACCCGTCT | + |
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Preference number: 4 (lower is better) Translates to: IKKQKPRIRRHQNRGCLSQGQER*QENDPS Trigger: AGACGGGTCATTCTCCTGTCATCTCTCTTGGCCCTG...GGAAAGACACCCTCTGTTCTGATGCCTTCTGATGCGTGGCTTTTGCTTCTTTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000027978.7 ENSMUST00000115010.9 ENSMUST00000167607.8 ENSMUST00000195688.2 |
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| CDS-3UTR CAA 90 bp | GCTGTTGACCAGGGCGGTGAGGGAGCTTCACCTTGTGGGTCCGTCTGTGGAGAGCGCCTCTTGAGGAAATaGGAGGCATCAGATTCTTGC | + |
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Preference number: 5 (lower is better) Translates to: AVDQGGEGASPCGSVCGERLLRK*EASDSC Trigger: GCAAGAATCTGATGCCTCCAATTTCCTCAAGAGGCG...CTCTCCACAGACGGACCCACAAGGTGAAGCTCCCTCACCGCCCTGGTCAACAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000027978.7 ENSMUST00000115010.9 ENSMUST00000167607.8 ENSMUST00000195688.2 |
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| CDS-3UTR CAA 90 bp | TCACCTTGTGGGTCCGTCTGTGGAGAGGTGGCAGGCCTGTCACATGCTTCTCTTGACTTAGGAGACCGCTaGCCACGCCTCTTGAGGAAA | + |
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Preference number: 5 (lower is better) Translates to: SPCGSVCGEVAGLSHASLDLGDR*PRLLRK Trigger: TTTCCTCAAGAGGCGTGGCAAGCGGTCTCCTAAGTC...AAGAGAAGCATGTGACAGGCCTGCCACCTCTCCACAGACGGACCCACAAGGTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000027978.7 ENSMUST00000115010.9 ENSMUST00000167607.8 ENSMUST00000195688.2 |
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| CDS-3UTR CAA 90 bp | GGTGTCTTTCCTGGAGCTGTTGACCAGGGCGGTGAGGGAGCTTCACCTTGTGGGCTCAAACTCGTTCCTTaGCTCCTCGTAATACTCCCT | + |
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Preference number: 5 (lower is better) Translates to: GVFPGAVDQGGEGASPCGLKLVP*LLVILP Trigger: AGGGAGTATTACGAGGAGCAAAGGAACGAGTTTGAG...CCCACAAGGTGAAGCTCCCTCACCGCCCTGGTCAACAGCTCCAGGAAAGACACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027978.7 ENSMUST00000115010.9 |
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| CDS-3UTR CAA 90 bp | TCACCTTGTGGGTCCGTCTGTGGAGAGGTGGCAGGCCTGTCACATGCTTCTCTTCGCCTCTTGAGGAAATaGGAGGCATCAGATTCTTGC | + |
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Preference number: 5 (lower is better) Translates to: SPCGSVCGEVAGLSHASLRLLRK*EASDSC Trigger: GCAAGAATCTGATGCCTCCAATTTCCTCAAGAGGCG...AAGAGAAGCATGTGACAGGCCTGCCACCTCTCCACAGACGGACCCACAAGGTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000027978.7 ENSMUST00000115010.9 ENSMUST00000167607.8 ENSMUST00000195688.2 |
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| CDS-3UTR CAA 90 bp | GAAGGCATCAGAACAGAGGGTGTCTTTCCTGGAGCTGTTGACCAGGGCGGTGAGCTCAAACTCGTTCCTTaGCTCCTCGTAATACTCCCT | + |
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Preference number: 5 (lower is better) Translates to: EGIRTEGVFPGAVDQGGELKLVP*LLVILP Trigger: AGGGAGTATTACGAGGAGCAAAGGAACGAGTTTGAG...CTCACCGCCCTGGTCAACAGCTCCAGGAAAGACACCCTCTGTTCTGATGCCTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027978.7 ENSMUST00000115010.9 |
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| CDS-3UTR CAA 90 bp | AAGAAGCAAAAGCCACGCATCAGAAGGCATCAGAACAGAGGGTGTCTTTCCTGGCGCCTCTTGAGGAAATaGGAGGCATCAGATTCTTGC | + |
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Preference number: 5 (lower is better) Translates to: KKQKPRIRRHQNRGCLSWRLLRK*EASDSC Trigger: GCAAGAATCTGATGCCTCCAATTTCCTCAAGAGGCG...CCAGGAAAGACACCCTCTGTTCTGATGCCTTCTGATGCGTGGCTTTTGCTTCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000027978.7 ENSMUST00000115010.9 ENSMUST00000167607.8 ENSMUST00000195688.2 |
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| CDS-3UTR CAA 90 bp | CATAAAGAAGCAAAAGCCACGCATCAGAAGGCATCAGAACAGAGGGTGTCTTTCGACTTAGGAGACCGCTaGCCACGCCTCTTGAGGAAA | + |
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Preference number: 5 (lower is better) Translates to: HKEAKATHQKASEQRVSFDLGDR*PRLLRK Trigger: TTTCCTCAAGAGGCGTGGCAAGCGGTCTCCTAAGTC...GAAAGACACCCTCTGTTCTGATGCCTTCTGATGCGTGGCTTTTGCTTCTTTATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000027978.7 ENSMUST00000115010.9 ENSMUST00000167607.8 ENSMUST00000195688.2 |
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| CDS CAA 90 bp | CTGCTCATCTCTCTGTTCCTCCACGAAGTTCTCAAACTCGTTCCTTaGCTCCTCGTAATACTCCCTCCGCAGCTCATCATCCCGCAGCCT | + |
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Preference number: 6 (lower is better) Translates to: LLISLFLHEVLKLVP*LLVILPPQLIIPQP Trigger: AGGCTGCGGGATGATGAGCTGCGGAGGGAGTATTACGAGGAGCAAAGGAACGAGTTTGAGAACTTCGTGGAGGAACAGAGAGATGAGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027978.7 ENSMUST00000115010.9 |
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| CDS CAA 72 bp | TCCGCATTAACTTCATCTCGGGACTTAGGAGACCGCTaGCCACGCCTCTTGAGGAAATTGGAGGCATCAGAT | + |
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Preference number: 6 (lower is better) Translates to: SALTSSRDLGDR*PRLLRKLEASD Trigger: ATCTGATGCCTCCAATTTCCTCAAGAGGCGTGGCAAGCGGTCTCCTAAGTCCCGAGATGAAGTTAATGCGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027978.7 ENSMUST00000115010.9 |
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| CDS CAA 90 bp | CTCTCTTCCTGCTCATTAACTTCATCTCGGGACTTAGGAGACCGCTaGCCACGCCTCTTGAGGAAATTGGAGGCATCAGATTCTTGCATG | + |
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Preference number: 6 (lower is better) Translates to: LSSCSLTSSRDLGDR*PRLLRKLEASDSCM Trigger: CATGCAAGAATCTGATGCCTCCAATTTCCTCAAGAGGCGTGGCAAGCGGTCTCCTAAGTCCCGAGATGAAGTTAATGAGCAGGAAGAGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000167607.8 ENSMUST00000195688.2 |
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| CDS CAA 72 bp | TCATCTCGGGACTTAGGAGACCGCTTGCCACGCCTCTaGAGGAAATTGGAGGCATCAGATTCTTGCATGAAA | + |
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Preference number: 6 (lower is better) Translates to: SSRDLGDRLPRL*RKLEASDSCMK Trigger: TTTCATGCAAGAATCTGATGCCTCCAATTTCCTCAAGAGGCGTGGCAAGCGGTCTCCTAAGTCCCGAGATGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000027978.7 ENSMUST00000115010.9 ENSMUST00000167607.8 ENSMUST00000195688.2 |
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| CDS CAA 72 bp | TGCTCATTAACTTCATCTCGGGACTTAGGAGACCGCTaGCCACGCCTCTTGAGGAAATTGGAGGCATCAGAT | + |
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Preference number: 6 (lower is better) Translates to: CSLTSSRDLGDR*PRLLRKLEASD Trigger: ATCTGATGCCTCCAATTTCCTCAAGAGGCGTGGCAAGCGGTCTCCTAAGTCCCGAGATGAAGTTAATGAGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000167607.8 ENSMUST00000195688.2 |
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| CDS CAA 90 bp | TGTCTGTTTTCCGCATTAACTTCATCTCGGGACTTAGGAGACCGCTaGCCACGCCTCTTGAGGAAATTGGAGGCATCAGATTCTTGCATG | + |
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Preference number: 6 (lower is better) Translates to: CLFSALTSSRDLGDR*PRLLRKLEASDSCM Trigger: CATGCAAGAATCTGATGCCTCCAATTTCCTCAAGAGGCGTGGCAAGCGGTCTCCTAAGTCCCGAGATGAAGTTAATGCGGAAAACAGACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027978.7 ENSMUST00000115010.9 |
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| CDS CAA 90 bp | TCATCTCGGGACTTAGGAGACCGCTTGCCACGCCTCTTGAGGAAATaGGAGGCATCAGATTCTTGCATGAAAATCTTCTGTTTCACACCT | + |
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Preference number: 6 (lower is better) Translates to: SSRDLGDRLPRLLRK*EASDSCMKIFCFTP Trigger: AGGTGTGAAACAGAAGATTTTCATGCAAGAATCTGATGCCTCCAATTTCCTCAAGAGGCGTGGCAAGCGGTCTCCTAAGTCCCGAGATGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115010.9 ENSMUST00000167607.8 |
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| CDS CAA 90 bp | TCATCTCGGGACTTAGGAGACCGCTTGCCACGCCTCTTGAGGAAATaGGAGGCATCAGATTCTTGCATGAAAATCTTCTGTTTCACACTA | + |
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Preference number: 6 (lower is better) Translates to: SSRDLGDRLPRLLRK*EASDSCMKIFCFTL Trigger: TAGTGTGAAACAGAAGATTTTCATGCAAGAATCTGATGCCTCCAATTTCCTCAAGAGGCGTGGCAAGCGGTCTCCTAAGTCCCGAGATGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027978.7 ENSMUST00000195688.2 |
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| CDS CAA 90 bp | GCATTAACTTCATCTCGGGACTTAGGAGACCGCTTGCCACGCCTCTaGAGGAAATTGGAGGCATCAGATTCTTGCATGAAAATCTTCTGT | + |
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Preference number: 6 (lower is better) Translates to: ALTSSRDLGDRLPRL*RKLEASDSCMKIFC Trigger: ACAGAAGATTTTCATGCAAGAATCTGATGCCTCCAATTTCCTCAAGAGGCGTGGCAAGCGGTCTCCTAAGTCCCGAGATGAAGTTAATGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027978.7 ENSMUST00000115010.9 |
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| CDS CAA 72 bp | GACTTAGGAGACCGCTTGCCACGCCTCTTGAGGAAATaGGAGGCATCAGATTCTTGCATGAAAATCTTCTGT | + |
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Preference number: 6 (lower is better) Translates to: DLGDRLPRLLRK*EASDSCMKIFC Trigger: ACAGAAGATTTTCATGCAAGAATCTGATGCCTCCAATTTCCTCAAGAGGCGTGGCAAGCGGTCTCCTAAGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000027978.7 ENSMUST00000115010.9 ENSMUST00000167607.8 ENSMUST00000195688.2 |
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| CDS CAA 90 bp | TCATTAACTTCATCTCGGGACTTAGGAGACCGCTTGCCACGCCTCTaGAGGAAATTGGAGGCATCAGATTCTTGCATGAAAATCTTCTGT | + |
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Preference number: 6 (lower is better) Translates to: SLTSSRDLGDRLPRL*RKLEASDSCMKIFC Trigger: ACAGAAGATTTTCATGCAAGAATCTGATGCCTCCAATTTCCTCAAGAGGCGTGGCAAGCGGTCTCCTAAGTCCCGAGATGAAGTTAATGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000167607.8 ENSMUST00000195688.2 |
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