Pregenerated sensors for UBXN8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000052906Ensembl transcript IDs: ENSMUST00000095349.6
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AAATTGTGGGAGTTGAGGCGTGTCCCACCATGCCCGGCTGAGGCTTaGATCCAGGTCTGTCTTACTCTTTTTACCTCCTTTCACATTATA | + |
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Preference number: 1 (lower is better) Translates to: KLWELRRVPPCPAEA*IQVCLTLFTSFHII Trigger: TATAATGTGAAAGGAGGTAAAAAGAGTAAGACAGACCTGGATGCAAGCCTCAGCCGGGCATGGTGGGACACGCCTCAACTCCCACAATTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| 3UTR GCA 90 bp | TGGTGGGGTGTTCACCCCAGGCCTTATATTCAATTCCAAGTTATGTaGACAGGTACTGCAGAAGTAATGTTTGTTTATAGTTTACACTCA | + |
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Preference number: 1 (lower is better) Translates to: WWGVHPRPYIQFQVM*TGTAEVMFVYSLHS Trigger: TGAGTGTAAACTATAAACAAACATTACTTCTGCAGTACCTGTGCACATAACTTGGAATTGAATATAAGGCCTGGGGTGAACACCCCACCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| 3UTR-3UTR CCA 90 bp | CACCATGCCCGGCTGAGGCTTGCATCCAGGTCTGTCTTACTCTTTTTACCTCCTGGTGTGGGCGGGGTGTaGGCGGGGTACACCTGTGGA | + |
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Preference number: 2 (lower is better) Translates to: HHARLRLASRSVLLFLPPGVGGV*AGYTCG Trigger: TCCACAGGTGTACCCCGCCCACACCCCGCCCACACC...AGGAGGTAAAAAGAGTAAGACAGACCTGGATGCAAGCCTCAGCCGGGCATGGTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| 3UTR-3UTR GCA 90 bp | TTTCATGTAGCCCAGGTAGCCTTGAACCCTCCTGATCCTCCTGCCCCCTTCCCAGCCACAGACCATCAGTaGAAAGCGGTCCTCATCCAT | + |
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Preference number: 2 (lower is better) Translates to: FHVAQVALNPPDPPAPFPATDHQ*KAVLIH Trigger: ATGGATGAGGACCGCTTTGCACTGATGGTCTGTGGC...TGGGAAGGGGGCAGGAGGATCAGGAGGGTTCAAGGCTACCTGGGCTACATGAAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| 3UTR-3UTR TCA 90 bp | TGGGGCTCCTTGCTAGGCCACAGATATCTGCTGAGTAATAACAGTAGGCAGCTGGAACCAGTTCTTATATaGGCTAGGGTTTGGTTTGGT | + |
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Preference number: 2 (lower is better) Translates to: WGSLLGHRYLLSNNSRQLEPVLI*ARVWFG Trigger: ACCAAACCAAACCCTAGCTCATATAAGAACTGGTTC...CAGCTGCCTACTGTTATTACTCAGCAGATATCTGTGGCCTAGCAAGGAGCCCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| 3UTR-3UTR TCA 90 bp | ACCACTGAAAAGGCGATTGTTGCATATCTAAGCATTTCATTAGGTGGTTCATATTGCATGGGGCTTGAATaGACACCGCCCTGTGGAAGG | + |
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Preference number: 2 (lower is better) Translates to: TTEKAIVAYLSISLGGSYCMGLE*TPPCGR Trigger: CCTTCCACAGGGCGGTGTTCATTCAAGCCCCATGCA...ATATGAACCACCTAATGAAATGCTTAGATATGCAACAATCGCCTTTTCAGTGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| 3UTR-3UTR CCA 90 bp | TCTAAGTCAAAACTATACAGGATCAGTTGGCTCTGGGAGTTCTTTAAGTTTTTAATGAACACCGCCCTGTaGAAGGGCAGCAGGTGCTTC | + |
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Preference number: 2 (lower is better) Translates to: SKSKLYRISWLWEFFKFLMNTAL*KGSRCF Trigger: GAAGCACCTGCTGCCCTTCCACAGGGCGGTGTTCAT...TAAAAACTTAAAGAACTCCCAGAGCCAACTGATCCTGTATAGTTTTGACTTAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| 3UTR-3UTR CCA 90 bp | TGGGGCTCCTTGCTAGGCCACAGATATCTGCTGAGTAATAACAGTAGGCAGCTGCCTAAAAACAGGAATTaGCCTGTTTATTTAGTAGCA | + |
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Preference number: 2 (lower is better) Translates to: WGSLLGHRYLLSNNSRQLPKNRN*PVYLVA Trigger: TGCTACTAAATAAACAGGCCAATTCCTGTTTTTAGG...CAGCTGCCTACTGTTATTACTCAGCAGATATCTGTGGCCTAGCAAGGAGCCCCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| 3UTR-3UTR GCA 90 bp | CCTTATATTCAATTCCAAGTTATGTGCACAGGTACTGCAGAAGTAATGTTTGTTTGCCCGGCTGAGGCTTaGATCCAGGTCTGTCTTACT | + |
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Preference number: 2 (lower is better) Translates to: PYIQFQVMCTGTAEVMFVCPAEA*IQVCLT Trigger: AGTAAGACAGACCTGGATGCAAGCCTCAGCCGGGCA...AACAAACATTACTTCTGCAGTACCTGTGCACATAACTTGGAATTGAATATAAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| 3UTR-3UTR CCA 90 bp | ACCACTGAAAAGGCGATTGTTGCATATCTAAGCATTTCATTAGGTGGTTCATATTTAACTCAAAAATTGTaGGAGTTGAGGCGTGTCCCA | + |
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Preference number: 2 (lower is better) Translates to: TTEKAIVAYLSISLGGSYLTQKL*ELRRVP Trigger: TGGGACACGCCTCAACTCCCACAATTTTTGAGTTAA...ATATGAACCACCTAATGAAATGCTTAGATATGCAACAATCGCCTTTTCAGTGGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| 3UTR-3UTR CCA 90 bp | CCTTATATTCAATTCCAAGTTATGTGCACAGGTACTGCAGAAGTAATGTTTGTTTGGCCTTGTTTACTGTaGTTTCACTATGTTCCCCAA | + |
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Preference number: 2 (lower is better) Translates to: PYIQFQVMCTGTAEVMFVWPCLL*FHYVPQ Trigger: TTGGGGAACATAGTGAAACCACAGTAAACAAGGCCA...AACAAACATTACTTCTGCAGTACCTGTGCACATAACTTGGAATTGAATATAAGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| 3UTR TCA 72 bp | GTGGACGAGAGGAGCTCCAGGTGCATGGGGCTTGAATaGACACCGCCCTGTGGAAGGGCAGCAGGTGCTTCC | + |
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Preference number: 3 (lower is better) Translates to: VDERSSRCMGLE*TPPCGRAAGAS Trigger: GGAAGCACCTGCTGCCCTTCCACAGGGCGGTGTTCATTCAAGCCCCATGCACCTGGAGCTCCTCTCGTCCAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| 3UTR TCA 72 bp | ACCTGTGGACGAGAGGAGCTCCAGGTGCATGGGGCTTaGATGAACACCGCCCTGTGGAAGGGCAGCAGGTGC | + |
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Preference number: 3 (lower is better) Translates to: TCGREELQVHGA*MNTALWKGSRC Trigger: GCACCTGCTGCCCTTCCACAGGGCGGTGTTCATTCAAGCCCCATGCACCTGGAGCTCCTCTCGTCCACAGGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| 3UTR-3UTR CAA 90 bp | TTTCATGTAGCCCAGGTAGCCTTGAACCCTCCTGATCCTCCTGCCCCCTTCCCAACAGGACCCCACAGGTaGAGAGATGCTCTAAGGGCA | + |
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Preference number: 3 (lower is better) Translates to: FHVAQVALNPPDPPAPFPTGPHR*RDALRA Trigger: TGCCCTTAGAGCATCTCTCAACCTGTGGGGTCCTGT...TGGGAAGGGGGCAGGAGGATCAGGAGGGTTCAAGGCTACCTGGGCTACATGAAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| 3UTR GCA 72 bp | GAGTTGAGGCGTGTCCCACCATGCCCGGCTGAGGCTTaGATCCAGGTCTGTCTTACTCTTTTTACCTCCTTT | + |
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Preference number: 3 (lower is better) Translates to: ELRRVPPCPAEA*IQVCLTLFTSF Trigger: AAAGGAGGTAAAAAGAGTAAGACAGACCTGGATGCAAGCCTCAGCCGGGCATGGTGGGACACGCCTCAACTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| 3UTR GCA 72 bp | TGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTaGATCCATGCCCAGCGGAAGTTATCTTTCTTAATC | + |
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Preference number: 3 (lower is better) Translates to: CLCLPSAGIKGV*IHAQRKLSFLI Trigger: GATTAAGAAAGATAACTTCCGCTGGGCATGGATGCACACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| 3UTR GCA 72 bp | GTTCACCCCAGGCCTTATATTCAATTCCAAGTTATGTaGACAGGTACTGCAGAAGTAATGTTTGTTTATAGT | + |
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Preference number: 3 (lower is better) Translates to: VHPRPYIQFQVM*TGTAEVMFVYS Trigger: ACTATAAACAAACATTACTTCTGCAGTACCTGTGCACATAACTTGGAATTGAATATAAGGCCTGGGGTGAAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| 3UTR TCA 72 bp | AATACAATAGAATGTCCCTTCATCCTCCTTAGATTCTaGCTGAATTGTGAAATACTTTATGGTAAGGTAGAC | + |
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Preference number: 3 (lower is better) Translates to: NTIECPFILLRF*LNCEILYGKVD Trigger: GTCTACCTTACCATAAAGTATTTCACAATTCAGTCAGAATCTAAGGAGGATGAAGGGACATTCTATTGTATT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| 3UTR CAA 72 bp | CACCTGTGGACGAGAGGAGCTCCAGGTGCATGGGGCTaGAATGAACACCGCCCTGTGGAAGGGCAGCAGGTG | + |
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Preference number: 4 (lower is better) Translates to: HLWTRGAPGAWG*NEHRPVEGQQV Trigger: CACCTGCTGCCCTTCCACAGGGCGGTGTTCATTCAAGCCCCATGCACCTGGAGCTCCTCTCGTCCACAGGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| CDS-3UTR TCA 90 bp | CTCTGTGTAGCCCTGGCCATCCTGAGACTCCCTCTGTATGACCAGGCTGACTTCTCCTATGTCCTCCAGTaGCGAGCCTCCCTCCACTTC | + |
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Preference number: 4 (lower is better) Translates to: LCVALAILRLPLYDQADFSYVLQ*RASLHF Trigger: GAAGTGGAGGGAGGCTCGTCACTGGAGGACATAGGA...GAAGTCAGCCTGGTCATACAGAGGGAGTCTCAGGATGGCCAGGGCTACACAGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| CDS-3UTR GCA 90 bp | ACAGACCATCAGTGCAAAGCGGTCCTCATCCATGGGGTGTGGGCGGGGTGTGGGGTTCTGTCTTCTTGCTaGCTCTCCGTTTATTGTTTC | + |
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Preference number: 4 (lower is better) Translates to: TDHQCKAVLIHGVWAGCGVLSSC*LSVYCF Trigger: GAAACAATAAACGGAGAGGCAGCAAGAAGACAGAAC...CCCACACCCCGCCCACACCCCATGGATGAGGACCGCTTTGCACTGATGGTCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| CDS-3UTR TCA 90 bp | CTCTGTGTAGCCCTGGCCATCCTGAGACTCCCTCTGTATGACCAGGCTGACTTCGTGAATTCCACGACTTaGAAAATCTTCTCCTCAGAA | + |
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Preference number: 4 (lower is better) Translates to: LCVALAILRLPLYDQADFVNSTT*KIFSSE Trigger: TTCTGAGGAGAAGATTTTTCAAGTCGTGGAATTCAC...GAAGTCAGCCTGGTCATACAGAGGGAGTCTCAGGATGGCCAGGGCTACACAGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| CDS-3UTR TCA 90 bp | CTCTGTGTAGCCCTGGCCATCCTGAGACTCCCTCTGTATGACCAGGCTGACTTCGTTTCAAAAGATGCCTaGCTTGAATTTTCAAACTCC | + |
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Preference number: 4 (lower is better) Translates to: LCVALAILRLPLYDQADFVSKDA*LEFSNS Trigger: GGAGTTTGAAAATTCAAGTCAGGCATCTTTTGAAAC...GAAGTCAGCCTGGTCATACAGAGGGAGTCTCAGGATGGCCAGGGCTACACAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| 3UTR CAA 72 bp | TCCTTCCGAGGGATAGAATTGCCAGTATGGGGCTCCTaGCTAGGCCACAGATATCTGCTGAGTAATAACAGT | + |
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Preference number: 4 (lower is better) Translates to: SFRGIELPVWGS*LGHRYLLSNNS Trigger: ACTGTTATTACTCAGCAGATATCTGTGGCCTAGCAAGGAGCCCCATACTGGCAATTCTATCCCTCGGAAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| CDS-3UTR CCA 90 bp | CACCATGCCCGGCTGAGGCTTGCATCCAGGTCTGTCTTACTCTTTTTACCTCCTCTATATAGGGATTTGTaGTACCCAACTTTCATCATC | + |
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Preference number: 4 (lower is better) Translates to: HHARLRLASRSVLLFLPPLYRDL*YPTFII Trigger: GATGATGAAAGTTGGGTACCACAAATCCCTATATAG...AGGAGGTAAAAAGAGTAAGACAGACCTGGATGCAAGCCTCAGCCGGGCATGGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| CDS-3UTR CCA 90 bp | CCTTATATTCAATTCCAAGTTATGTGCACAGGTACTGCAGAAGTAATGTTTGTTCTTCCAGGGCCCTTCTaGGAAAGGAATTGGAAAGTC | + |
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Preference number: 4 (lower is better) Translates to: PYIQFQVMCTGTAEVMFVLPGPF*ERNWKV Trigger: GACTTTCCAATTCCTTTCCCAGAAGGGCCCTGGAAG...AACAAACATTACTTCTGCAGTACCTGTGCACATAACTTGGAATTGAATATAAGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| CDS-3UTR GCA 90 bp | TGCACAGGTACTGCAGAAGTAATGTTTGTTTATAGTTTACACTCAAAAGCAGAACAAGTTCTGTCTTCTTaGTGCCTCTCCGTTTATTGT | + |
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Preference number: 4 (lower is better) Translates to: CTGTAEVMFVYSLHSKAEQVLSS*CLSVYC Trigger: ACAATAAACGGAGAGGCAGCAAGAAGACAGAACTTG...TTCTGCTTTTGAGTGTAAACTATAAACAAACATTACTTCTGCAGTACCTGTGCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| CDS-3UTR TCA 90 bp | TGCACAGGTACTGCAGAAGTAATGTTTGTTTATAGTTTACACTCAAAAGCAGAAAAAAGATGCCTGACTTaGATTTTCAAACTCCGAATC | + |
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Preference number: 4 (lower is better) Translates to: CTGTAEVMFVYSLHSKAEKRCLT*IFKLRI Trigger: GATTCGGAGTTTGAAAATTCAAGTCAGGCATCTTTT...TTCTGCTTTTGAGTGTAAACTATAAACAAACATTACTTCTGCAGTACCTGTGCA 36% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| CDS-3UTR CAA 90 bp | TGGGGCTCCTTGCTAGGCCACAGATATCTGCTGAGTAATAACAGTAGGCAGCTGACCCTGGGCTTCCTGTaGCCTTTCCCTCACGAGTCT | + |
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Preference number: 5 (lower is better) Translates to: WGSLLGHRYLLSNNSRQLTLGFL*PFPHES Trigger: AGACTCGTGAGGGAAAGGCAACAGGAAGCCCAGGGT...CAGCTGCCTACTGTTATTACTCAGCAGATATCTGTGGCCTAGCAAGGAGCCCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| CDS-3UTR CAA 90 bp | TTTCATGTAGCCCAGGTAGCCTTGAACCCTCCTGATCCTCCTGCCCCCTTCCCACTGCCTCTCCGTTTATaGTTTCAAAAGATGCCTGAC | + |
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Preference number: 5 (lower is better) Translates to: FHVAQVALNPPDPPAPFPLPLRL*FQKMPD Trigger: GTCAGGCATCTTTTGAAACAATAAACGGAGAGGCAG...TGGGAAGGGGGCAGGAGGATCAGGAGGGTTCAAGGCTACCTGGGCTACATGAAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| CDS CCA 90 bp | CTATGTCCTCCAGTGACGAGCCTCCCTCCACTTCCAGGGCCCTTCTaGGAAAGGAATTGGAAAGTCTATATAGGGATTTGTGGTACCCAA | + |
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Preference number: 5 (lower is better) Translates to: LCPPVTSLPPLPGPF*ERNWKVYIGICGTQ Trigger: TTGGGTACCACAAATCCCTATATAGACTTTCCAATTCCTTTCCCAGAAGGGCCCTGGAAGTGGAGGGAGGCTCGTCACTGGAGGACATAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| CDS GCA 90 bp | ACATTCTCTATATATCTGCTGGCCTTCTCACCCTGGGCTTCCTGTTaGCTTTCCCTCACGAGTCTCCGTCTTTTCTCATTCTCTTTTTCT | + |
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Preference number: 5 (lower is better) Translates to: TFSIYLLAFSPWASC*LSLTSLRLFSFSFS Trigger: AGAAAAAGAGAATGAGAAAAGACGGAGACTCGTGAGGGAAAGGCAACAGGAAGCCCAGGGTGAGAAGGCCAGCAGATATATAGAGAATGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| CDS TCA 90 bp | CAACTTTCATCATCCAGTCAAGTAAGACCTGTGAATTCCACGACTTaGAAAATCTTCTCCTCAGAACACGTCCATTTGGGCATCGAAGGG | + |
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Preference number: 5 (lower is better) Translates to: QLSSSSQVRPVNSTT*KIFSSEHVHLGIEG Trigger: CCCTTCGATGCCCAAATGGACGTGTTCTGAGGAGAAGATTTTTCAAGTCGTGGAATTCACAGGTCTTACTTGACTGGATGATGAAAGTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| CDS CCA 90 bp | AGGGCCCTTCTGGGAAAGGAATTGGAAAGTCTATATAGGGATTTGTaGTACCCAACTTTCATCATCCAGTCAAGTAAGACCTGTGAATTC | + |
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Preference number: 5 (lower is better) Translates to: RALLGKELESLYRDL*YPTFIIQSSKTCEF Trigger: GAATTCACAGGTCTTACTTGACTGGATGATGAAAGTTGGGTACCACAAATCCCTATATAGACTTTCCAATTCCTTTCCCAGAAGGGCCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| CDS-3UTR CAA 90 bp | ACCACTGAAAAGGCGATTGTTGCATATCTAAGCATTTCATTAGGTGGTTCATATCAAAAGATGCCTGACTaGAATTTTCAAACTCCGAAT | + |
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Preference number: 5 (lower is better) Translates to: TTEKAIVAYLSISLGGSYQKMPD*NFQTPN Trigger: ATTCGGAGTTTGAAAATTCAAGTCAGGCATCTTTTG...ATATGAACCACCTAATGAAATGCTTAGATATGCAACAATCGCCTTTTCAGTGGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| CDS-3UTR CAA 90 bp | TGCACAGGTACTGCAGAAGTAATGTTTGTTTATAGTTTACACTCAAAAGCAGAATGTGAATTCCACGACTaGAAAAATCTTCTCCTCAGA | + |
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Preference number: 5 (lower is better) Translates to: CTGTAEVMFVYSLHSKAECEFHD*KNLLLR Trigger: TCTGAGGAGAAGATTTTTCAAGTCGTGGAATTCACA...TTCTGCTTTTGAGTGTAAACTATAAACAAACATTACTTCTGCAGTACCTGTGCA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| CDS-3UTR CAA 90 bp | CCTTATATTCAATTCCAAGTTATGTGCACAGGTACTGCAGAAGTAATGTTTGTTCTTCTGGGAAAGGAATaGGAAAGTCTATATAGGGAT | + |
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Preference number: 5 (lower is better) Translates to: PYIQFQVMCTGTAEVMFVLLGKE*ESLYRD Trigger: ATCCCTATATAGACTTTCCAATTCCTTTCCCAGAAG...AACAAACATTACTTCTGCAGTACCTGTGCACATAACTTGGAATTGAATATAAGG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| CDS GCA 72 bp | ATATATCTGCTGGCCTTCTCACCCTGGGCTTCCTGTTaGCTTTCCCTCACGAGTCTCCGTCTTTTCTCATTC | + |
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Preference number: 6 (lower is better) Translates to: IYLLAFSPWASC*LSLTSLRLFSF Trigger: GAATGAGAAAAGACGGAGACTCGTGAGGGAAAGGCAACAGGAAGCCCAGGGTGAGAAGGCCAGCAGATATAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| CDS CAA 90 bp | TCCAGGGCCCTTCTGGGAAAGGAATTGGAAAGTCTATATAGGGATTaGTGGTACCCAACTTTCATCATCCAGTCAAGTAAGACCTGTGAA | + |
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Preference number: 6 (lower is better) Translates to: SRALLGKELESLYRD*WYPTFIIQSSKTCE Trigger: TTCACAGGTCTTACTTGACTGGATGATGAAAGTTGGGTACCACAAATCCCTATATAGACTTTCCAATTCCTTTCCCAGAAGGGCCCTGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| CDS TCA 72 bp | TCATCCAGTCAAGTAAGACCTGTGAATTCCACGACTTaGAAAATCTTCTCCTCAGAACACGTCCATTTGGGC | + |
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Preference number: 6 (lower is better) Translates to: SSSQVRPVNSTT*KIFSSEHVHLG Trigger: GCCCAAATGGACGTGTTCTGAGGAGAAGATTTTTCAAGTCGTGGAATTCACAGGTCTTACTTGACTGGATGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| CDS CAA 72 bp | ATCATCCAGTCAAGTAAGACCTGTGAATTCCACGACTaGAAAAATCTTCTCCTCAGAACACGTCCATTTGGG | + |
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Preference number: 6 (lower is better) Translates to: IIQSSKTCEFHD*KNLLLRTRPFG Trigger: CCCAAATGGACGTGTTCTGAGGAGAAGATTTTTCAAGTCGTGGAATTCACAGGTCTTACTTGACTGGATGAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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| CDS CAA 72 bp | CTTCTGGGAAAGGAATTGGAAAGTCTATATAGGGATTaGTGGTACCCAACTTTCATCATCCAGTCAAGTAAG | + |
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Preference number: 6 (lower is better) Translates to: LLGKELESLYRD*WYPTFIIQSSK Trigger: CTTACTTGACTGGATGATGAAAGTTGGGTACCACAAATCCCTATATAGACTTTCCAATTCCTTTCCCAGAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095349.6 |
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