Pregenerated sensors for UBXN4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026353Ensembl transcript IDs: ENSMUST00000027592.6, ENSMUST00000190736.7
Found 102 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGAGAAACGCTAAACATCAGTTATCACCTGATTAGCTCGCTGAGGTaGTCGGGGCTCAGACTACTCAGTGACATACCAGTTACTGTGTGT | + |
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Preference number: 1 (lower is better) Translates to: RETLNISYHLISSLR*SGLRLLSDIPVTVC Trigger: ACACACAGTAACTGGTATGTCACTGAGTAGTCTGAGCCCCGAGCACCTCAGCGAGCTAATCAGGTGATAACTGATGTTTAGCGTTTCTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| 3UTR GCA 90 bp | ACGCTGCCCTCTACACACACAATTTACAAAGCTCAACTCATCCTGTaGCTACAGCTATGCTTCCTGCCTTCTTTCCACCAACATAGCAGA | + |
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Preference number: 1 (lower is better) Translates to: TLPSTHTIYKAQLIL*LQLCFLPSFHQHSR Trigger: TCTGCTATGTTGGTGGAAAGAAGGCAGGAAGCATAGCTGTAGGCACAGGATGAGTTGAGCTTTGTAAATTGTGTGTGTAGAGGGCAGCGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| 3UTR TCA 90 bp | CTGACATCTTCAGGGCAGCACTGGGAGGAAAAAGTCAGACAAAAGTaGCCTCGATACAGCCCTGTACAACAAAGATGCTTACAGCAAAAA | + |
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Preference number: 1 (lower is better) Translates to: LTSSGQHWEEKVRQK*PRYSPVQQRCLQQK Trigger: TTTTTGCTGTAAGCATCTTTGTTGTACAGGGCTGTATCGAGGTCACTTTTGTCTGACTTTTTCCTCCCAGTGCTGCCCTGAAGATGTCAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| 3UTR GCA 90 bp | ACACACACAATTTACAAAGCTCAACTCATCCTGTGCCTACAGCTATaGTTCCTGCCTTCTTTCCACCAACATAGCAGACATTCAATAAAC | + |
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Preference number: 1 (lower is better) Translates to: THTIYKAQLILCLQL*FLPSFHQHSRHSIN Trigger: GTTTATTGAATGTCTGCTATGTTGGTGGAAAGAAGGCAGGAAGCATAGCTGTAGGCACAGGATGAGTTGAGCTTTGTAAATTGTGTGTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| 3UTR TCA 90 bp | GCTGGTTACCCTACACAAGGACCTAGCATCCAGCTATTTCATGTTTaGCTTTTTCAGGTTAAACAACTTAACTCAAAACCTCTTAGCAGA | + |
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Preference number: 1 (lower is better) Translates to: AGYPTQGPSIQLFHV*LFQVKQLNSKPLSR Trigger: TCTGCTAAGAGGTTTTGAGTTAAGTTGTTTAACCTGAAAAAGTCAAACATGAAATAGCTGGATGCTAGGTCCTTGTGTAGGGTAACCAGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| 3UTR-3UTR CCA 90 bp | TGCGCCACCACGCCCAGCTCCATGTGTACTTTTAAAAGAGATAACGTTGAAGAGGCGGTGGTGGCAGGGTaGCCTTGGGATTCTTCTAGG | + |
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Preference number: 2 (lower is better) Translates to: CATTPSSMCTFKRDNVEEAVVAG*PWDSSR Trigger: CCTAGAAGAATCCCAAGGCCACCCTGCCACCACCGC...CTCTTCAACGTTATCTCTTTTAAAAGTACACATGGAGCTGGGCGTGGTGGCGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| 3UTR-3UTR TCA 90 bp | ATCACAACTTTCAGGAATAATGGGGGTGAAGTGTCTCCTCTCTACCCTAGTCCTGTCCTAAGGAAACAGTaGGAATCTGCACTGCTCGCT | + |
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Preference number: 2 (lower is better) Translates to: ITTFRNNGGEVSPLYPSPVLRKQ*ESALLA Trigger: AGCGAGCAGTGCAGATTCTCACTGTTTCCTTAGGAC...AGGACTAGGGTAGAGAGGAGACACTTCACCCCCATTATTCCTGAAAGTTGTGAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| 3UTR-3UTR CCA 90 bp | GGAATAATGGGGGTGAAGTGTCTCCTCTCTACCCTAGTCCTACAGTACTGGACTACCAGTTACTGTGTGTaGCTTGAGAATCTTGCAGCA | + |
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Preference number: 2 (lower is better) Translates to: GIMGVKCLLSTLVLQYWTTSYCV*LENLAA Trigger: TGCTGCAAGATTCTCAAGCCACACACAGTAACTGGT...AGTCCAGTACTGTAGGACTAGGGTAGAGAGGAGACACTTCACCCCCATTATTCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| 3UTR-3UTR TCA 90 bp | ATCACAACTTTCAGGAATAATGGGGGTGAAGTGTCTCCTCTCTACCCTAGTCCTGCTCAGACTACTCAGTaGCATACCAGTTACTGTGTG | + |
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Preference number: 2 (lower is better) Translates to: ITTFRNNGGEVSPLYPSPAQTTQ*HTSYCV Trigger: CACACAGTAACTGGTATGTCACTGAGTAGTCTGAGC...AGGACTAGGGTAGAGAGGAGACACTTCACCCCCATTATTCCTGAAAGTTGTGAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| 3UTR-3UTR CCA 90 bp | CCACCACGCCCAGCTCCATGTGTACTTTTAAAAGAGATAACGTTGAAGAGTGATTCTAGGCTCAACAGCTaGTTACCCTACACAAGGACC | + |
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Preference number: 2 (lower is better) Translates to: PPRPAPCVLLKEITLKSDSRLNS*LPYTRT Trigger: GGTCCTTGTGTAGGGTAACCAGCTGTTGAGCCTAGA...ATCACTCTTCAACGTTATCTCTTTTAAAAGTACACATGGAGCTGGGCGTGGTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| 3UTR-3UTR TCA 90 bp | TGCGCCACCACGCCCAGCTCCATGTGTACTTTTAAAAGAGATAACGTTGAAGAGTTACTGTGTGTGGCTTaGGAATCTTGCAGCAAAAAG | + |
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Preference number: 2 (lower is better) Translates to: CATTPSSMCTFKRDNVEELLCVA*ESCSKK Trigger: CTTTTTGCTGCAAGATTCTCAAGCCACACACAGTAA...CTCTTCAACGTTATCTCTTTTAAAAGTACACATGGAGCTGGGCGTGGTGGCGCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| 3UTR-3UTR TCA 90 bp | ATCACAACTTTCAGGAATAATGGGGGTGAAGTGTCTCCTCTCTACCCTAGTCCTACTCAGTTATTTTGCTaGCATCTTCAGGGCAGCACT | + |
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Preference number: 2 (lower is better) Translates to: ITTFRNNGGEVSPLYPSPTQLFC*HLQGST Trigger: AGTGCTGCCCTGAAGATGTCAGCAAAATAACTGAGT...AGGACTAGGGTAGAGAGGAGACACTTCACCCCCATTATTCCTGAAAGTTGTGAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| 3UTR-3UTR TCA 90 bp | CTCTTTACATATACATTAGCACGCTGCCCTCTACACACACAATTTACAAAGCTCTTGGCCTGGCAAGTGTaGCTGCTGCATGTGAGATTT | + |
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Preference number: 2 (lower is better) Translates to: LFTYTLARCPLHTQFTKLLAWQV*LLHVRF Trigger: AAATCTCACATGCAGCAGTCACACTTGCCAGGCCAA...GAGCTTTGTAAATTGTGTGTGTAGAGGGCAGCGTGCTAATGTATATGTAAAGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| 3UTR-3UTR GCA 90 bp | CTCTTTACATATACATTAGCACGCTGCCCTCTACACACACAATTTACAAAGCTCCTGTGCCTACAGCTATaGTTCCTGCCTTCTTTCCAC | + |
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Preference number: 2 (lower is better) Translates to: LFTYTLARCPLHTQFTKLLCLQL*FLPSFH Trigger: GTGGAAAGAAGGCAGGAAGCATAGCTGTAGGCACAG...GAGCTTTGTAAATTGTGTGTGTAGAGGGCAGCGTGCTAATGTATATGTAAAGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| 3UTR-3UTR TCA 90 bp | CTCTTTACATATACATTAGCACGCTGCCCTCTACACACACAATTTACAAAGCTCAGACTATACACGGTCTaGAAACATAAAGCTGACCCA | + |
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Preference number: 2 (lower is better) Translates to: LFTYTLARCPLHTQFTKLRLYTV*KHKADP Trigger: TGGGTCAGCTTTATGTTTTCAGACCGTGTATAGTCT...GAGCTTTGTAAATTGTGTGTGTAGAGGGCAGCGTGCTAATGTATATGTAAAGAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| 3UTR-3UTR TCA 90 bp | AACAAATGTGATCAATGCAGAAGACTGCAAGAGAACTCCAAGGACATACATCATAAAGTCAGACAAAAGTaGCCTCGATACAGCCCTGTA | + |
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Preference number: 2 (lower is better) Translates to: NKCDQCRRLQENSKDIHHKVRQK*PRYSPV Trigger: TACAGGGCTGTATCGAGGTCACTTTTGTCTGACTTT...ATGATGTATGTCCTTGGAGTTCTCTTGCAGTCTTCTGCATTGATCACATTTGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| 3UTR-3UTR CCA 90 bp | GTATGTTCCATTTCTCAACAGGAATTACATCCACAGAAGGCATTTTGTTGTTTTTACAGTACTGGACTTTaGCCTGGCAAGTGTGACTGC | + |
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Preference number: 2 (lower is better) Translates to: VCSISQQELHPQKAFCCFYSTGL*PGKCDC Trigger: GCAGTCACACTTGCCAGGCCAAAGTCCAGTACTGTA...AAAACAACAAAATGCCTTCTGTGGATGTAATTCCTGTTGAGAAATGGAACATAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| 3UTR GCA 72 bp | GGAAGGTTCTGTTACTCCAGCACTTTAGCTGCCCCCTaGTTCCCGCCAGCACCACAGCTCACACGCAACACG | + |
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Preference number: 3 (lower is better) Translates to: GRFCYSSTLAAP*FPPAPQLTRNT Trigger: CGTGTTGCGTGTGAGCTGTGGTGCTGGCGGGAAGCAGGGGGCAGCTAAAGTGCTGGAGTAACAGAACCTTCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| 3UTR TCA 72 bp | CTATGTAGACCAGCCTGGCCCTTAAACTCCTGCACCTaGTTCCTAAGCGCTGGGATTTTACGTGTGAGCCAC | + |
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Preference number: 3 (lower is better) Translates to: LCRPAWPLNSCT*FLSAGILRVSH Trigger: GTGGCTCACACGTAAAATCCCAGCGCTTAGGAATCAGGTGCAGGAGTTTAAGGGCCAGGCTGGTCTACATAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| 3UTR GCA 72 bp | CCTGCCCCATCTCCCAAGTACTGTACAGGAACAAGATaGCACGCCCAGCTTGCTGTGTTTTTAGATGACTGG | + |
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Preference number: 3 (lower is better) Translates to: PAPSPKYCTGTR*HAQLAVFLDDW Trigger: CCAGTCATCTAAAAACACAGCAAGCTGGGCGTGGCATCTTGTTCCTGTACAGTACTTGGGAGATGGGGCAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| 3UTR GCA 72 bp | CTAAACATCAGTTATCACCTGATTAGCTCGCTGAGGTaGTCGGGGCTCAGACTACTCAGTGACATACCAGTT | + |
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Preference number: 3 (lower is better) Translates to: LNISYHLISSLR*SGLRLLSDIPV Trigger: AACTGGTATGTCACTGAGTAGTCTGAGCCCCGAGCACCTCAGCGAGCTAATCAGGTGATAACTGATGTTTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| 3UTR TCA 72 bp | ACTGGACTTTGGCCTGGCAAGTGTGACTGCTGCATGTaGGATTTCAGCAGGAATATTAGTGAGCAATCTAAG | + |
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Preference number: 3 (lower is better) Translates to: TGLWPGKCDCCM*DFSRNISEQSK Trigger: CTTAGATTGCTCACTAATATTCCTGCTGAAATCTCACATGCAGCAGTCACACTTGCCAGGCCAAAGTCCAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| 3UTR GCA 72 bp | ATTTACAAAGCTCAACTCATCCTGTGCCTACAGCTATaGTTCCTGCCTTCTTTCCACCAACATAGCAGACAT | + |
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Preference number: 3 (lower is better) Translates to: IYKAQLILCLQL*FLPSFHQHSRH Trigger: ATGTCTGCTATGTTGGTGGAAAGAAGGCAGGAAGCATAGCTGTAGGCACAGGATGAGTTGAGCTTTGTAAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| 3UTR GCA 72 bp | CATACCATTAACAAGTATTTCTTAAAACTCATATATTaGCTCGTTATTGCAGAGACAGATCTCACTCTGCCT | + |
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Preference number: 3 (lower is better) Translates to: HTINKYFLKLIY*LVIAETDLTLP Trigger: AGGCAGAGTGAGATCTGTCTCTGCAATAACGAGGCAATATATGAGTTTTAAGAAATACTTGTTAATGGTATG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| 3UTR TCA 72 bp | TCCATGTGTACTTTTAAAAGAGATAACGTTGAAGAGTaGTCCTGTTACTCACACATGAACTATGGACATTTT | + |
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Preference number: 3 (lower is better) Translates to: SMCTFKRDNVEE*SCYSHMNYGHF Trigger: AAAATGTCCATAGTTCATGTGTGAGTAACAGGATCACTCTTCAACGTTATCTCTTTTAAAAGTACACATGGA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| 3UTR GCA 72 bp | ACAACTTCTTTAAATAGTGTTAACAAATGTGATCAATaGAGAAGACTGCAAGAGAACTCCAAGGACATACAT | + |
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Preference number: 3 (lower is better) Translates to: TTSLNSVNKCDQ*RRLQENSKDIH Trigger: ATGTATGTCCTTGGAGTTCTCTTGCAGTCTTCTGCATTGATCACATTTGTTAACACTATTTAAAGAAGTTGT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| CDS-3UTR GCA 90 bp | TGCGCCACCACGCCCAGCTCCATGTGTACTTTTAAAAGAGATAACGTTGAAGAGTGTGGCTGGCCGTCCTaGTGGCAGCAGCACCACAGA | + |
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Preference number: 4 (lower is better) Translates to: CATTPSSMCTFKRDNVEECGWPS*WQQHHR Trigger: TCTGTGGTGCTGCTGCCAGCAGGACGGCCAGCCACA...CTCTTCAACGTTATCTCTTTTAAAAGTACACATGGAGCTGGGCGTGGTGGCGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| CDS-3UTR GCA 90 bp | GGAATAATGGGGGTGAAGTGTCTCCTCTCTACCCTAGTCCTACAGTACTGGACTGGCTGTCATGACCTGTaGATTCTCCTCCTGTTGCAG | + |
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Preference number: 4 (lower is better) Translates to: GIMGVKCLLSTLVLQYWTGCHDL*ILLLLQ Trigger: CTGCAACAGGAGGAGAATGCACAGGTCATGACAGCC...AGTCCAGTACTGTAGGACTAGGGTAGAGAGGAGACACTTCACCCCCATTATTCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| CDS-3UTR GCA 90 bp | GAAAACATAAAGCTGACCCACTTCTCCAGCAGCAGTCTCGCTGAGTGGAGTCCTCCGGAACTGAATTCTTaGAATGGTGCTTCTGTCTCG | + |
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Preference number: 4 (lower is better) Translates to: ENIKLTHFSSSSLAEWSPPELNS*NGASVS Trigger: CGAGACAGAAGCACCATTGCAAGAATTCAGTTCCGG...AGGACTCCACTCAGCGAGACTGCTGCTGGAGAAGTGGGTCAGCTTTATGTTTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| CDS-3UTR CCA 90 bp | ACAGCCCTGTACAACAAAGATGCTTACAGCAAAAATAAGATCATTCTGGTTTTTCGATGGCCGCCGGGATaGCGCCCTGGAACCACAGCA | + |
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Preference number: 4 (lower is better) Translates to: TALYNKDAYSKNKIILVFRWPPG*RPGTTA Trigger: TGCTGTGGTTCCAGGGCGCCATCCCGGCGGCCATCG...AAAAACCAGAATGATCTTATTTTTGCTGTAAGCATCTTTGTTGTACAGGGCTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| CDS-3UTR CCA 90 bp | TGCGCCACCACGCCCAGCTCCATGTGTACTTTTAAAAGAGATAACGTTGAAGAGAAGGCTCTGTGGATGTaGCTCTTGCTGAAGTCTGTG | + |
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Preference number: 4 (lower is better) Translates to: CATTPSSMCTFKRDNVEEKALWM*LLLKSV Trigger: CACAGACTTCAGCAAGAGCCACATCCACAGAGCCTT...CTCTTCAACGTTATCTCTTTTAAAAGTACACATGGAGCTGGGCGTGGTGGCGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| CDS-3UTR CCA 90 bp | GGAATAATGGGGGTGAAGTGTCTCCTCTCTACCCTAGTCCTACAGTACTGGACTAGTTTGAAGGCTCTGTaGATGTGGCTCTTGCTGAAG | + |
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Preference number: 4 (lower is better) Translates to: GIMGVKCLLSTLVLQYWTSLKAL*MWLLLK Trigger: CTTCAGCAAGAGCCACATCCACAGAGCCTTCAAACT...AGTCCAGTACTGTAGGACTAGGGTAGAGAGGAGACACTTCACCCCCATTATTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| CDS-3UTR CCA 90 bp | ACGGTTCAAACATCACAACTTTCAGGAATAATGGGGGTGAAGTGTCTCCTCTCTGCAAGGCAGCAGCTTTaGCAGCTTCTGCTTCCTTTG | + |
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Preference number: 4 (lower is better) Translates to: TVQTSQLSGIMGVKCLLSARQQL*QLLLPL Trigger: CAAAGGAAGCAGAAGCTGCCAAAGCTGCTGCCTTGC...AGAGAGGAGACACTTCACCCCCATTATTCCTGAAAGTTGTGATGTTTGAACCGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| CDS-3UTR TCA 90 bp | GTGAAGTGTCTCCTCTCTACCCTAGTCCTACAGTACTGGACTTTGGCCTGGCAATACAGGATAAATTTGTaGAAACTGCAGACAGGCTTC | + |
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Preference number: 4 (lower is better) Translates to: VKCLLSTLVLQYWTLAWQYRINL*KLQTGF Trigger: GAAGCCTGTCTGCAGTTTTCACAAATTTATCCTGTA...TTGCCAGGCCAAAGTCCAGTACTGTAGGACTAGGGTAGAGAGGAGACACTTCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| CDS-3UTR TCA 90 bp | TGCGCCACCACGCCCAGCTCCATGTGTACTTTTAAAAGAGATAACGTTGAAGAGTACATCAGGTTCAAATaGGGCAGATGGGGTAGATAC | + |
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Preference number: 4 (lower is better) Translates to: CATTPSSMCTFKRDNVEEYIRFK*GRWGRY Trigger: GTATCTACCCCATCTGCCTCATTTGAACCTGATGTA...CTCTTCAACGTTATCTCTTTTAAAAGTACACATGGAGCTGGGCGTGGTGGCGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| CDS-3UTR GCA 90 bp | GGAATAATGGGGGTGAAGTGTCTCCTCTCTACCCTAGTCCTACAGTACTGGACTTGCTTCCTTTGTCTTTaGAAAACGAGCAGCTCTTTC | + |
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Preference number: 4 (lower is better) Translates to: GIMGVKCLLSTLVLQYWTCFLCL*KTSSSF Trigger: GAAAGAGCTGCTCGTTTTGCAAAGACAAAGGAAGCA...AGTCCAGTACTGTAGGACTAGGGTAGAGAGGAGACACTTCACCCCCATTATTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| CDS-3UTR TCA 90 bp | CTACACACACAATTTACAAAGCTCAACTCATCCTGTGCCTACAGCTATGCTTCCTCCTGTTGCAGTATCTaGCTTTGTGTCAGAGGTAGC | + |
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Preference number: 4 (lower is better) Translates to: LHTQFTKLNSSCAYSYASSCCSI*LCVRGS Trigger: GCTACCTCTGACACAAAGTCAGATACTGCAACAGGA...GGAAGCATAGCTGTAGGCACAGGATGAGTTGAGCTTTGTAAATTGTGTGTGTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| CDS-3UTR CCA 90 bp | ACGGTTCAAACATCACAACTTTCAGGAATAATGGGGGTGAAGTGTCTCCTCTCTTGTGTCAGAGGTAGCTaGTGTCTCACAAAGCTCTGT | + |
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Preference number: 4 (lower is better) Translates to: TVQTSQLSGIMGVKCLLSCVRGS*CLTKLC Trigger: ACAGAGCTTTGTGAGACACCAGCTACCTCTGACACA...AGAGAGGAGACACTTCACCCCCATTATTCCTGAAAGTTGTGATGTTTGAACCGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| CDS-3UTR CCA 90 bp | AACAAATGTGATCAATGCAGAAGACTGCAAGAGAACTCCAAGGACATACATCATCCGTTCCTGCCTGTTTaGTCAGCAAGGCAGCAGCTT | + |
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Preference number: 4 (lower is better) Translates to: NKCDQCRRLQENSKDIHHPFLPV*SARQQL Trigger: AAGCTGCTGCCTTGCTGACCAAACAGGCAGGAACGG...ATGATGTATGTCCTTGGAGTTCTCTTGCAGTCTTCTGCATTGATCACATTTGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| CDS-3UTR TCA 90 bp | ACAGCCCTGTACAACAAAGATGCTTACAGCAAAAATAAGATCATTCTGGTTTTTGGATGTGGCTCTTGCTaGAGTCTGTGCAGGAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: TALYNKDAYSKNKIILVFGCGSC*SLCRRR Trigger: CCTCCTCCTGCACAGACTTCAGCAAGAGCCACATCC...AAAAACCAGAATGATCTTATTTTTGCTGTAAGCATCTTTGTTGTACAGGGCTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| CDS-3UTR GCA 90 bp | TACTCAGTTATTTTGCTGACATCTTCAGGGCAGCACTGGGAGGAAAAAGTCAGATGTAACAAGCTCATCTaGAGAAACACTCCCCGCTAT | + |
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Preference number: 4 (lower is better) Translates to: YSVILLTSSGQHWEEKVRCNKLI*RNTPRY Trigger: ATAGCGGGGAGTGTTTCTGCAGATGAGCTTGTTACA...TCTGACTTTTTCCTCCCAGTGCTGCCCTGAAGATGTCAGCAAAATAACTGAGTA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| CDS-3UTR GCA 90 bp | ATCACAACTTTCAGGAATAATGGGGGTGAAGTGTCTCCTCTCTACCCTAGTCCTCCCTTTTCTCTGATTTaGTGGATGATGCAGAGTTTG | + |
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Preference number: 4 (lower is better) Translates to: ITTFRNNGGEVSPLYPSPPFSLI*WMMQSL Trigger: CAAACTCTGCATCATCCAGCAAATCAGAGAAAAGGG...AGGACTAGGGTAGAGAGGAGACACTTCACCCCCATTATTCCTGAAAGTTGTGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| CDS-3UTR CCA 90 bp | CTCTTTACATATACATTAGCACGCTGCCCTCTACACACACAATTTACAAAGCTCTCTCCACTAGAAGAGTaGACAATGGATGTGGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: LFTYTLARCPLHTQFTKLSPLEE*TMDVAG Trigger: GCCAGCCACATCCATTGTCCACTCTTCTAGTGGAGA...GAGCTTTGTAAATTGTGTGTGTAGAGGGCAGCGTGCTAATGTATATGTAAAGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| 3UTR CAA 72 bp | GAGGAGTTCTTCCTGTCTGACACAGGCAGGGTCAGGTaGACTTTCCATTTTAAAACCAGAAGTACAGCAAAA | + |
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Preference number: 4 (lower is better) Translates to: EEFFLSDTGRVR*TFHFKTRSTAK Trigger: TTTTGCTGTACTTCTGGTTTTAAAATGGAAAGTCAACCTGACCCTGCCTGTGTCAGACAGGAAGAACTCCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| CDS-3UTR TCA 90 bp | ACGGTTCAAACATCACAACTTTCAGGAATAATGGGGGTGAAGTGTCTCCTCTCTTATAGTCTTCTCTGGTaGACTCTCTTCTGGGAAACA | + |
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Preference number: 4 (lower is better) Translates to: TVQTSQLSGIMGVKCLLSYSLLW*TLFWET Trigger: TGTTTCCCAGAAGAGAGTTCACCAGAGAAGACTATA...AGAGAGGAGACACTTCACCCCCATTATTCCTGAAAGTTGTGATGTTTGAACCGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| CDS-3UTR TCA 90 bp | ACGGTTCAAACATCACAACTTTCAGGAATAATGGGGGTGAAGTGTCTCCTCTCTTCTTCACCGTCATCTTaGGTCCTCAGTCTGTATATT | + |
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Preference number: 4 (lower is better) Translates to: TVQTSQLSGIMGVKCLLSSSPSS*VLSLYI Trigger: AATATACAGACTGAGGACTCAAGATGACGGTGAAGA...AGAGAGGAGACACTTCACCCCCATTATTCCTGAAAGTTGTGATGTTTGAACCGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| CDS-3UTR GCA 90 bp | GTATGTTCCATTTCTCAACAGGAATTACATCCACAGAAGGCATTTTGTTGTTTTTTGCTCATCATCCCCTaGCACGAACACCACGAAGAC | + |
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Preference number: 4 (lower is better) Translates to: VCSISQQELHPQKAFCCFLLIIP*HEHHED Trigger: GTCTTCGTGGTGTTCGTGGCAGGGGATGATGAGCAA...AAAACAACAAAATGCCTTCTGTGGATGTAATTCCTGTTGAGAAATGGAACATAC 42% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| CDS-3UTR CCA 90 bp | ATCACAACTTTCAGGAATAATGGGGGTGAAGTGTCTCCTCTCTACCCTAGTCCTACTGAACTTTCTGACTaGTTGTCATTTGTCACTGAT | + |
|
Preference number: 4 (lower is better) Translates to: ITTFRNNGGEVSPLYPSPTELSD*LSFVTD Trigger: ATCAGTGACAAATGACAACCAGTCAGAAAGTTCAGT...AGGACTAGGGTAGAGAGGAGACACTTCACCCCCATTATTCCTGAAAGTTGTGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS-3UTR GCA 90 bp | ACAGCCCTGTACAACAAAGATGCTTACAGCAAAAATAAGATCATTCTGGTTTTTGTCTGTGCAGCAAACTaGCTCGCTTCTTCTAGAGGA | + |
|
Preference number: 4 (lower is better) Translates to: TALYNKDAYSKNKIILVFVCAAN*LASSRG Trigger: TCCTCTAGAAGAAGCGAGGCAGTTTGCTGCACAGAC...AAAAACCAGAATGATCTTATTTTTGCTGTAAGCATCTTTGTTGTACAGGGCTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS-3UTR CCA 90 bp | TACTCAGTTATTTTGCTGACATCTTCAGGGCAGCACTGGGAGGAAAAAGTCAGATTTTCTCTGATTTGCTaGATGATGCAGAGTTTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: YSVILLTSSGQHWEEKVRFSLIC*MMQSLK Trigger: CTTCAAACTCTGCATCATCCAGCAAATCAGAGAAAA...TCTGACTTTTTCCTCCCAGTGCTGCCCTGAAGATGTCAGCAAAATAACTGAGTA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS-3UTR GCA 90 bp | GTTTTGTTTTTGAGGCTGATGAGTGCAAAGAGAAACGCTAAACATCAGTTATCACTTAATCTCTCTCTGTaGTTCTTCCTTCCGCTTCTC | + |
|
Preference number: 4 (lower is better) Translates to: VLFLRLMSAKRNAKHQLSLNLSL*FFLPLL Trigger: GAGAAGCGGAAGGAAGAAGCACAGAGAGAGATTAAG...TGATAACTGATGTTTAGCGTTTCTCTTTGCACTCATCAGCCTCAAAAACAAAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS-3UTR GCA 90 bp | GTTTTGTTTTTGAGGCTGATGAGTGCAAAGAGAAACGCTAAACATCAGTTATCATTCATCTTCCCAACTTaGAGCCATTTGTATAGATTG | + |
|
Preference number: 4 (lower is better) Translates to: VLFLRLMSAKRNAKHQLSFIFPT*SHLYRL Trigger: CAATCTATACAAATGGCTGCAAGTTGGGAAGATGAA...TGATAACTGATGTTTAGCGTTTCTCTTTGCACTCATCAGCCTCAAAAACAAAAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS CCA 90 bp | TGGATGTGGCTGGCCGTCCTGCTGGCAGCAGCACCACAGAGGCGCTaGGGGCGAGCTCCAGATCCAGCAGCCTCCTCTTATAGTCTTCTC | + |
|
Preference number: 5 (lower is better) Translates to: WMWLAVLLAAAPQRR*GRAPDPAASSYSLL Trigger: GAGAAGACTATAAGAGGAGGCTGCTGGATCTGGAGCTCGCCCCCAGCGCCTCTGTGGTGCTGCTGCCAGCAGGACGGCCAGCCACATCCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS-3UTR CAA 90 bp | CCCCCTGCTTCCCGCCAGCACCACAGCTCACACGCAACACGCGTGTTACTCCGCCTGTGGATGTGGCTCTaGCTGAAGTCTGTGCAGGAG | + |
|
Preference number: 5 (lower is better) Translates to: PPASRQHHSSHATRVLLRLWMWL*LKSVQE Trigger: CTCCTGCACAGACTTCAGCAAGAGCCACATCCACAG...GCGGAGTAACACGCGTGTTGCGTGTGAGCTGTGGTGCTGGCGGGAAGCAGGGGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS-3UTR CAA 90 bp | CCCCCTGCTTCCCGCCAGCACCACAGCTCACACGCAACACGCGTGTTACTCCGCAGCAAGGCAGCAGCTTaGGCAGCTTCTGCTTCCTTT | + |
|
Preference number: 5 (lower is better) Translates to: PPASRQHHSSHATRVLLRSKAAA*AASASF Trigger: AAAGGAAGCAGAAGCTGCCAAAGCTGCTGCCTTGCT...GCGGAGTAACACGCGTGTTGCGTGTGAGCTGTGGTGCTGGCGGGAAGCAGGGGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS GCA 90 bp | GGCAGCTTCTGCTTCCTTTGTCTTTGCAAAACGAGCAGCTCTTTCTaGACGATCCAGGGCAATCTGCTGCTTGATGCGCTCTCGAGCCGC | + |
|
Preference number: 5 (lower is better) Translates to: GSFCFLCLCKTSSSF*TIQGNLLLDALSSR Trigger: GCGGCTCGAGAGCGCATCAAGCAGCAGATTGCCCTGGATCGTGCAGAAAGAGCTGCTCGTTTTGCAAAGACAAAGGAAGCAGAAGCTGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS TCA 90 bp | CAAAACGAGCAGCTCTTTCTGCACGATCCAGGGCAATCTGCTGCTTaGTGCGCTCTCGAGCCGCTCTATCTTCTGCCTTCTCTCTGCTTC | + |
|
Preference number: 5 (lower is better) Translates to: QNEQLFLHDPGQSAA*CALEPLYLLPSLCF Trigger: GAAGCAGAGAGAAGGCAGAAGATAGAGCGGCTCGAGAGCGCATCAAGCAGCAGATTGCCCTGGATCGTGCAGAAAGAGCTGCTCGTTTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS GCA 90 bp | TTTGCAAAACGAGCAGCTCTTTCTGCACGATCCAGGGCAATCTGCTaGTTGATGCGCTCTCGAGCCGCTCTATCTTCTGCCTTCTCTCTG | + |
|
Preference number: 5 (lower is better) Translates to: FAKRAALSARSRAIC*LMRSRAALSSAFSL Trigger: CAGAGAGAAGGCAGAAGATAGAGCGGCTCGAGAGCGCATCAAGCAGCAGATTGCCCTGGATCGTGCAGAAAGAGCTGCTCGTTTTGCAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS GCA 90 bp | GTCTTTGCAAAACGAGCAGCTCTTTCTGCACGATCCAGGGCAATCTaGTGCTTGATGCGCTCTCGAGCCGCTCTATCTTCTGCCTTCTCT | + |
|
Preference number: 5 (lower is better) Translates to: VFAKRAALSARSRAI*CLMRSRAALSSAFS Trigger: AGAGAAGGCAGAAGATAGAGCGGCTCGAGAGCGCATCAAGCAGCAGATTGCCCTGGATCGTGCAGAAAGAGCTGCTCGTTTTGCAAAGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS-3UTR CAA 90 bp | GAAAACATAAAGCTGACCCACTTCTCCAGCAGCAGTCTCGCTGAGTGGAGTCCTCAGCTTCTGCTTCCTTaGTCTTTGCAAAACGAGCAG | + |
|
Preference number: 5 (lower is better) Translates to: ENIKLTHFSSSSLAEWSPQLLLP*SLQNEQ Trigger: CTGCTCGTTTTGCAAAGACAAAGGAAGCAGAAGCTG...AGGACTCCACTCAGCGAGACTGCTGCTGGAGAAGTGGGTCAGCTTTATGTTTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS-3UTR CAA 90 bp | GTGAAGTGTCTCCTCTCTACCCTAGTCCTACAGTACTGGACTTTGGCCTGGCAACTGACTGGTTGTCATTaGTCACTGATGCTTCACCTT | + |
|
Preference number: 5 (lower is better) Translates to: VKCLLSTLVLQYWTLAWQLTGCH*SLMLHL Trigger: AAGGTGAAGCATCAGTGACAAATGACAACCAGTCAG...TTGCCAGGCCAAAGTCCAGTACTGTAGGACTAGGGTAGAGAGGAGACACTTCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS-3UTR CAA 90 bp | GAAAACATAAAGCTGACCCACTTCTCCAGCAGCAGTCTCGCTGAGTGGAGTCCTCTGCTTCCTTTGTCTTaGCAAAACGAGCAGCTCTTT | + |
|
Preference number: 5 (lower is better) Translates to: ENIKLTHFSSSSLAEWSPLLPLS*QNEQLF Trigger: AAAGAGCTGCTCGTTTTGCAAAGACAAAGGAAGCAG...AGGACTCCACTCAGCGAGACTGCTGCTGGAGAAGTGGGTCAGCTTTATGTTTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS TCA 90 bp | AGAGTGGCTGTCATGACCTGTGCATTCTCCTCCTGTTGCAGTATCTaGCTTTGTGTCAGAGGTAGCTGGTGTCTCACAAAGCTCTGTATT | + |
|
Preference number: 5 (lower is better) Translates to: RVAVMTCAFSSCCSI*LCVRGSWCLTKLCI Trigger: AATACAGAGCTTTGTGAGACACCAGCTACCTCTGACACAAAGTCAGATACTGCAACAGGAGGAGAATGCACAGGTCATGACAGCCACTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027592.6 ENSMUST00000190736.7 |
||
| CDS GCA 90 bp | CTGGTTTGTAAAGGAAGAACCATCAGGCAGCCGGAACTGAATTCTTaGAATGGTGCTTCTGTCTCGTGCTGTAGACTCTCTCTTGACTTC | + |
|
Preference number: 5 (lower is better) Translates to: LVCKGRTIRQPELNS*NGASVSCCRLSLDF Trigger: GAAGTCAAGAGAGAGTCTACAGCACGAGACAGAAGCACCATTGCAAGAATTCAGTTCCGGCTGCCTGATGGTTCTTCCTTTACAAACCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS-3UTR CAA 90 bp | CCACCACGCCCAGCTCCATGTGTACTTTTAAAAGAGATAACGTTGAAGAGTGATGCTGTAGACTCTCTCTaGACTTCCGTTCCTGCCTGT | + |
|
Preference number: 5 (lower is better) Translates to: PPRPAPCVLLKEITLKSDAVDSL*TSVPAC Trigger: ACAGGCAGGAACGGAAGTCAAGAGAGAGTCTACAGC...ATCACTCTTCAACGTTATCTCTTTTAAAAGTACACATGGAGCTGGGCGTGGTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS-3UTR CAA 90 bp | ATCACAACTTTCAGGAATAATGGGGGTGAAGTGTCTCCTCTCTACCCTAGTCCTTGGATGATGCAGAGTTaGAAGGCTCTGTGGATGTGG | + |
|
Preference number: 5 (lower is better) Translates to: ITTFRNNGGEVSPLYPSPWMMQS*KALWMW Trigger: CCACATCCACAGAGCCTTCAAACTCTGCATCATCCA...AGGACTAGGGTAGAGAGGAGACACTTCACCCCCATTATTCCTGAAAGTTGTGAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS-3UTR CAA 90 bp | AACAAATGTGATCAATGCAGAAGACTGCAAGAGAACTCCAAGGACATACATCATTCCGTTCCTGCCTGTTaGGTCAGCAAGGCAGCAGCT | + |
|
Preference number: 5 (lower is better) Translates to: NKCDQCRRLQENSKDIHHSVPAC*VSKAAA Trigger: AGCTGCTGCCTTGCTGACCAAACAGGCAGGAACGGA...ATGATGTATGTCCTTGGAGTTCTCTTGCAGTCTTCTGCATTGATCACATTTGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS-3UTR CAA 90 bp | ATCCTGTGCCTACAGCTATGCTTCCTGCCTTCTTTCCACCAACATAGCAGACATGAACTTTCTGACTGGTaGTCATTTGTCACTGATGCT | + |
|
Preference number: 5 (lower is better) Translates to: ILCLQLCFLPSFHQHSRHELSDW*SFVTDA Trigger: AGCATCAGTGACAAATGACAACCAGTCAGAAAGTTC...ATGTCTGCTATGTTGGTGGAAAGAAGGCAGGAAGCATAGCTGTAGGCACAGGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS-3UTR CAA 90 bp | ACGGTTCAAACATCACAACTTTCAGGAATAATGGGGGTGAAGTGTCTCCTCTCTTTTCCATTCCAAGTGTaGTTCTCGTCTTCACCGTCA | + |
|
Preference number: 5 (lower is better) Translates to: TVQTSQLSGIMGVKCLLSFPFQV*FSSSPS Trigger: TGACGGTGAAGACGAGAACAACACTTGGAATGGAAA...AGAGAGGAGACACTTCACCCCCATTATTCCTGAAAGTTGTGATGTTTGAACCGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS TCA 90 bp | GTCACTGATGCTTCACCTTTTGACGAGTGCATCTGTTGGACTTTATaGATTCTTGTAACAAGCTCATCTGCAGAAACACTCCCCGCTATT | + |
|
Preference number: 5 (lower is better) Translates to: VTDASPFDECICWTL*ILVTSSSAETLPAI Trigger: AATAGCGGGGAGTGTTTCTGCAGATGAGCTTGTTACAAGAATTCATAAAGTCCAACAGATGCACTCGTCAAAAGGTGAAGCATCAGTGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS-3UTR CAA 90 bp | TACTCAGTTATTTTGCTGACATCTTCAGGGCAGCACTGGGAGGAAAAAGTCAGACCAACTTGCAGCCATTaGTATAGATTGCTCATCATC | + |
|
Preference number: 5 (lower is better) Translates to: YSVILLTSSGQHWEEKVRPTCSH*YRLLII Trigger: GATGATGAGCAATCTATACAAATGGCTGCAAGTTGG...TCTGACTTTTTCCTCCCAGTGCTGCCCTGAAGATGTCAGCAAAATAACTGAGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS-3UTR CAA 90 bp | GTATGTTCCATTTCTCAACAGGAATTACATCCACAGAAGGCATTTTGTTGTTTTCGGCTGGTCTCTGGTTaGAACATCCATGAGGCTCCT | + |
|
Preference number: 5 (lower is better) Translates to: VCSISQQELHPQKAFCCFRLVSG*NIHEAP Trigger: AGGAGCCTCATGGATGTTCAAACCAGAGACCAGCCG...AAAACAACAAAATGCCTTCTGTGGATGTAATTCCTGTTGAGAAATGGAACATAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS-3UTR CAA 90 bp | AACAAATGTGATCAATGCAGAAGACTGCAAGAGAACTCCAAGGACATACATCATGCCGGAACTGAATTCTaGCAATGGTGCTTCTGTCTC | + |
|
Preference number: 5 (lower is better) Translates to: NKCDQCRRLQENSKDIHHAGTEF*QWCFCL Trigger: GAGACAGAAGCACCATTGCAAGAATTCAGTTCCGGC...ATGATGTATGTCCTTGGAGTTCTCTTGCAGTCTTCTGCATTGATCACATTTGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS-3UTR CAA 90 bp | TACTCAGTTATTTTGCTGACATCTTCAGGGCAGCACTGGGAGGAAAAAGTCAGACAAAGCTCTGTATTTTaGGACTCGGGATTTTCACAT | + |
|
Preference number: 5 (lower is better) Translates to: YSVILLTSSGQHWEEKVRQSSVF*DSGFSH Trigger: ATGTGAAAATCCCGAGTCCAAAAATACAGAGCTTTG...TCTGACTTTTTCCTCCCAGTGCTGCCCTGAAGATGTCAGCAAAATAACTGAGTA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS-3UTR CAA 90 bp | TCAATAAACATGTGCTGGATTAGTATGTTCCATTTCTCAACAGGAATTACATCCTGCATTCTCCTCCTGTaGCAGTATCTGACTTTGTGT | + |
|
Preference number: 5 (lower is better) Translates to: SINMCWISMFHFSTGITSCILLL*QYLTLC Trigger: ACACAAAGTCAGATACTGCAACAGGAGGAGAATGCA...GGATGTAATTCCTGTTGAGAAATGGAACATACTAATCCAGCACATGTTTATTGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS-3UTR CAA 90 bp | GTATGTTCCATTTCTCAACAGGAATTACATCCACAGAAGGCATTTTGTTGTTTTTCCCTTTTCTCTGATTaGCTGGATGATGCAGAGTTT | + |
|
Preference number: 5 (lower is better) Translates to: VCSISQQELHPQKAFCCFSLFSD*LDDAEF Trigger: AAACTCTGCATCATCCAGCAAATCAGAGAAAAGGGA...AAAACAACAAAATGCCTTCTGTGGATGTAATTCCTGTTGAGAAATGGAACATAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS GCA 72 bp | ACTAGAAGAGTGGACAATGGATGTGGCTGGCCGTCCTaGTGGCAGCAGCACCACAGAGGCGCTGGGGGCGAG | + |
|
Preference number: 6 (lower is better) Translates to: TRRVDNGCGWPS*WQQHHRGAGGE Trigger: CTCGCCCCCAGCGCCTCTGTGGTGCTGCTGCCAGCAGGACGGCCAGCCACATCCATTGTCCACTCTTCTAGT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS CCA 72 bp | AATGTCTCCACTAGAAGAGTGGACAATGGATGTGGCTaGCCGTCCTGCTGGCAGCAGCACCACAGAGGCGCT | + |
|
Preference number: 6 (lower is better) Translates to: NVSTRRVDNGCG*PSCWQQHHRGA Trigger: AGCGCCTCTGTGGTGCTGCTGCCAGCAGGACGGCCAGCCACATCCATTGTCCACTCTTCTAGTGGAGACATT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS CAA 72 bp | GCAGCTCTTTCTGCACGATCCAGGGCAATCTGCTGCTaGATGCGCTCTCGAGCCGCTCTATCTTCTGCCTTC | + |
|
Preference number: 6 (lower is better) Translates to: AALSARSRAICC*MRSRAALSSAF Trigger: GAAGGCAGAAGATAGAGCGGCTCGAGAGCGCATCAAGCAGCAGATTGCCCTGGATCGTGCAGAAAGAGCTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS TCA 72 bp | TACTCTGACGGTGAGGTCCTCGGCTGGTCTCTGGTTTaGACATCCATGAGGCTCCTGAGAGTGGCTGTCATG | + |
|
Preference number: 6 (lower is better) Translates to: YSDGEVLGWSLV*TSMRLLRVAVM Trigger: CATGACAGCCACTCTCAGGAGCCTCATGGATGTTCAAACCAGAGACCAGCCGAGGACCTCACCGTCAGAGTA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027592.6 ENSMUST00000190736.7 |
||
| CDS TCA 72 bp | CAGCTCTTTCTGCACGATCCAGGGCAATCTGCTGCTTaGTGCGCTCTCGAGCCGCTCTATCTTCTGCCTTCT | + |
|
Preference number: 6 (lower is better) Translates to: QLFLHDPGQSAA*CALEPLYLLPS Trigger: AGAAGGCAGAAGATAGAGCGGCTCGAGAGCGCATCAAGCAGCAGATTGCCCTGGATCGTGCAGAAAGAGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS CCA 72 bp | GTCCCCAGTAATGTCCAAATGTCTCCACTAGAAGAGTaGACAATGGATGTGGCTGGCCGTCCTGCTGGCAGC | + |
|
Preference number: 6 (lower is better) Translates to: VPSNVQMSPLEE*TMDVAGRPAGS Trigger: GCTGCCAGCAGGACGGCCAGCCACATCCATTGTCCACTCTTCTAGTGGAGACATTTGGACATTACTGGGGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS CAA 90 bp | GCAAAACGAGCAGCTCTTTCTGCACGATCCAGGGCAATCTGCTGCTaGATGCGCTCTCGAGCCGCTCTATCTTCTGCCTTCTCTCTGCTT | + |
|
Preference number: 6 (lower is better) Translates to: AKRAALSARSRAICC*MRSRAALSSAFSLL Trigger: AAGCAGAGAGAAGGCAGAAGATAGAGCGGCTCGAGAGCGCATCAAGCAGCAGATTGCCCTGGATCGTGCAGAAAGAGCTGCTCGTTTTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS GCA 72 bp | AAACGAGCAGCTCTTTCTGCACGATCCAGGGCAATCTaGTGCTTGATGCGCTCTCGAGCCGCTCTATCTTCT | + |
|
Preference number: 6 (lower is better) Translates to: KRAALSARSRAI*CLMRSRAALSS Trigger: AGAAGATAGAGCGGCTCGAGAGCGCATCAAGCAGCAGATTGCCCTGGATCGTGCAGAAAGAGCTGCTCGTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS CAA 72 bp | AGGCAGCAGCTTTGGCAGCTTCTGCTTCCTTTGTCTTaGCAAAACGAGCAGCTCTTTCTGCACGATCCAGGG | + |
|
Preference number: 6 (lower is better) Translates to: RQQLWQLLLPLS*QNEQLFLHDPG Trigger: CCCTGGATCGTGCAGAAAGAGCTGCTCGTTTTGCAAAGACAAAGGAAGCAGAAGCTGCCAAAGCTGCTGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS CAA 90 bp | TGGTCAGCAAGGCAGCAGCTTTGGCAGCTTCTGCTTCCTTTGTCTTaGCAAAACGAGCAGCTCTTTCTGCACGATCCAGGGCAATCTGCT | + |
|
Preference number: 6 (lower is better) Translates to: WSARQQLWQLLLPLS*QNEQLFLHDPGQSA Trigger: AGCAGATTGCCCTGGATCGTGCAGAAAGAGCTGCTCGTTTTGCAAAGACAAAGGAAGCAGAAGCTGCCAAAGCTGCTGCCTTGCTGACCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS CAA 90 bp | CTCTTGACTTCCGTTCCTGCCTGTTTGGTCAGCAAGGCAGCAGCTTaGGCAGCTTCTGCTTCCTTTGTCTTTGCAAAACGAGCAGCTCTT | + |
|
Preference number: 6 (lower is better) Translates to: LLTSVPACLVSKAAA*AASASFVFAKRAAL Trigger: AAGAGCTGCTCGTTTTGCAAAGACAAAGGAAGCAGAAGCTGCCAAAGCTGCTGCCTTGCTGACCAAACAGGCAGGAACGGAAGTCAAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS GCA 72 bp | TGCTTCCTTTGTCTTTGCAAAACGAGCAGCTCTTTCTaGACGATCCAGGGCAATCTGCTGCTTGATGCGCTC | + |
|
Preference number: 6 (lower is better) Translates to: CFLCLCKTSSSF*TIQGNLLLDAL Trigger: GAGCGCATCAAGCAGCAGATTGCCCTGGATCGTGCAGAAAGAGCTGCTCGTTTTGCAAAGACAAAGGAAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS GCA 72 bp | CCGGAACTGAATTCTTGCAATGGTGCTTCTGTCTCGTaGTGTAGACTCTCTCTTGACTTCCGTTCCTGCCTG | + |
|
Preference number: 6 (lower is better) Translates to: PELNSCNGASVS*CRLSLDFRSCL Trigger: CAGGCAGGAACGGAAGTCAAGAGAGAGTCTACAGCACGAGACAGAAGCACCATTGCAAGAATTCAGTTCCGG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS CAA 90 bp | TTCGGACTGGTTCCCTTTTCTCTGATTTGCTGGATGATGCAGAGTTaGAAGGCTCTGTGGATGTGGCTCTTGCTGAAGTCTGTGCAGGAG | + |
|
Preference number: 6 (lower is better) Translates to: FGLVPFSLICWMMQS*KALWMWLLLKSVQE Trigger: CTCCTGCACAGACTTCAGCAAGAGCCACATCCACAGAGCCTTCAAACTCTGCATCATCCAGCAAATCAGAGAAAAGGGAACCAGTCCGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS GCA 72 bp | ATCCATGAGGCTCCTGAGAGTGGCTGTCATGACCTGTaGATTCTCCTCCTGTTGCAGTATCTGACTTTGTGT | + |
|
Preference number: 6 (lower is better) Translates to: IHEAPESGCHDL*ILLLLQYLTLC Trigger: ACACAAAGTCAGATACTGCAACAGGAGGAGAATGCACAGGTCATGACAGCCACTCTCAGGAGCCTCATGGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027592.6 ENSMUST00000190736.7 |
||
| CDS CAA 72 bp | TCAGCAAGGCAGCAGCTTTGGCAGCTTCTGCTTCCTTaGTCTTTGCAAAACGAGCAGCTCTTTCTGCACGAT | + |
|
Preference number: 6 (lower is better) Translates to: SARQQLWQLLLP*SLQNEQLFLHD Trigger: ATCGTGCAGAAAGAGCTGCTCGTTTTGCAAAGACAAAGGAAGCAGAAGCTGCCAAAGCTGCTGCCTTGCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS TCA 72 bp | GTCATGACCTGTGCATTCTCCTCCTGTTGCAGTATCTaGCTTTGTGTCAGAGGTAGCTGGTGTCTCACAAAG | + |
|
Preference number: 6 (lower is better) Translates to: VMTCAFSSCCSI*LCVRGSWCLTK Trigger: CTTTGTGAGACACCAGCTACCTCTGACACAAAGTCAGATACTGCAACAGGAGGAGAATGCACAGGTCATGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027592.6 ENSMUST00000190736.7 |
||
| CDS GCA 72 bp | GAAACATGGTGGCTAATGAAAAATTGCCATAGGTGTTaGCCACGGTCTGTGCAGCAAACTGCCTCGCTTCTT | + |
|
Preference number: 6 (lower is better) Translates to: ETWWLMKNCHRC*PRSVQQTASLL Trigger: AAGAAGCGAGGCAGTTTGCTGCACAGACCGTGGGCAACACCTATGGCAATTTTTCATTAGCCACCATGTTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
||
| CDS TCA 72 bp | TGGTTTGTAAAGGAAGAACCATCAGGCAGCCGGAACTaGATTCTTGCAATGGTGCTTCTGTCTCGTGCTGTA | + |
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Preference number: 6 (lower is better) Translates to: WFVKEEPSGSRN*ILAMVLLSRAV Trigger: TACAGCACGAGACAGAAGCACCATTGCAAGAATTCAGTTCCGGCTGCCTGATGGTTCTTCCTTTACAAACCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| CDS GCA 72 bp | GCATTCTTTTTCGGACTGGTTCCCTTTTCTCTGATTTaGTGGATGATGCAGAGTTTGAAGGCTCTGTGGATG | + |
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Preference number: 6 (lower is better) Translates to: AFFFGLVPFSLI*WMMQSLKALWM Trigger: CATCCACAGAGCCTTCAAACTCTGCATCATCCAGCAAATCAGAGAAAAGGGAACCAGTCCGAAAAAGAATGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| CDS CCA 72 bp | TTCTTTTTCGGACTGGTTCCCTTTTCTCTGATTTGCTaGATGATGCAGAGTTTGAAGGCTCTGTGGATGTGG | + |
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Preference number: 6 (lower is better) Translates to: FFFGLVPFSLIC*MMQSLKALWMW Trigger: CCACATCCACAGAGCCTTCAAACTCTGCATCATCCAGCAAATCAGAGAAAAGGGAACCAGTCCGAAAAAGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| CDS CAA 90 bp | GACTTTGTGTCAGAGGTAGCTGGTGTCTCACAAAGCTCTGTATTTTaGGACTCGGGATTTTCACATACATCAGGTTCAAATGAGGCAGAT | + |
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Preference number: 6 (lower is better) Translates to: DFVSEVAGVSQSSVF*DSGFSHTSGSNEAD Trigger: ATCTGCCTCATTTGAACCTGATGTATGTGAAAATCCCGAGTCCAAAAATACAGAGCTTTGTGAGACACCAGCTACCTCTGACACAAAGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027592.6 ENSMUST00000190736.7 |
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| CDS TCA 72 bp | GCTTCACCTTTTGACGAGTGCATCTGTTGGACTTTATaGATTCTTGTAACAAGCTCATCTGCAGAAACACTC | + |
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Preference number: 6 (lower is better) Translates to: ASPFDECICWTL*ILVTSSSAETL Trigger: GAGTGTTTCTGCAGATGAGCTTGTTACAAGAATTCATAAAGTCCAACAGATGCACTCGTCAAAAGGTGAAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| CDS CAA 72 bp | CTGACTGGTTGTCATTTGTCACTGATGCTTCACCTTTaGACGAGTGCATCTGTTGGACTTTATGAATTCTTG | + |
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Preference number: 6 (lower is better) Translates to: LTGCHLSLMLHL*TSASVGLYEFL Trigger: CAAGAATTCATAAAGTCCAACAGATGCACTCGTCAAAAGGTGAAGCATCAGTGACAAATGACAACCAGTCAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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| CDS CAA 72 bp | TCAGAGGTAGCTGGTGTCTCACAAAGCTCTGTATTTTaGGACTCGGGATTTTCACATACATCAGGTTCAAAT | + |
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Preference number: 6 (lower is better) Translates to: SEVAGVSQSSVF*DSGFSHTSGSN Trigger: ATTTGAACCTGATGTATGTGAAAATCCCGAGTCCAAAAATACAGAGCTTTGTGAGACACCAGCTACCTCTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027592.6 ENSMUST00000190736.7 |
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| CDS TCA 72 bp | GAAACTGGATGGAACACATACTACAGGATAAATTTGTaGAAACTGCAGACAGGCTTCACTTTTAGTATCAAT | + |
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Preference number: 6 (lower is better) Translates to: ETGWNTYYRINL*KLQTGFTFSIN Trigger: ATTGATACTAAAAGTGAAGCCTGTCTGCAGTTTTCACAAATTTATCCTGTAGTATGTGTTCCATCCAGTTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027592.6 |
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