Pregenerated sensors for UBXN2B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028243Ensembl transcript IDs: ENSMUST00000029907.6
Found 90 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCGGGTAAAAATGCATGTCAGTCCCTCCAAAGAGAAGAGCAACTCTaGAGAATGACCAAGGTTACTATAAAGTTCACACTCGGCAGTGCC | + |
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Preference number: 1 (lower is better) Translates to: SGKNACQSLQREEQL*RMTKVTIKFTLGSA Trigger: GGCACTGCCGAGTGTGAACTTTATAGTAACCTTGGTCATTCTTCAGAGTTGCTCTTCTCTTTGGAGGGACTGACATGCATTTTTACCCGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR GCA 90 bp | ACCCTGTTTCAAAGACTACAAAGCAAAAATCCCAGCTCATTTCCTTaGAATAACCAGAGAACCCTGGGTCCCTACAGCACATTCCAGCTA | + |
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Preference number: 1 (lower is better) Translates to: TLFQRLQSKNPSSFP*NNQRTLGPYSTFQL Trigger: TAGCTGGAATGTGCTGTAGGGACCCAGGGTTCTCTGGTTATTGCAAGGAAATGAGCTGGGATTTTTGCTTTGTAGTCTTTGAAACAGGGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR TCA 90 bp | AAACACAAACATCTTGCTGGTAATTTTCACTTCAGTCTCTCAGACTaGGTTCCTACACTGAGGAACAGACTATGTGTTGGACACCTCCAA | + |
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Preference number: 1 (lower is better) Translates to: KHKHLAGNFHFSLSD*VPTLRNRLCVGHLQ Trigger: TTGGAGGTGTCCAACACATAGTCTGTTCCTCAGTGTAGGAACTCAGTCTGAGAGACTGAAGTGAAAATTACCAGCAAGATGTTTGTGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR GCA 90 bp | CTTAGTACAAATCCCAGGCTACTGAAAGCAGCCCATTTGTCCATTTaGTCTCAACTATGCTCACAATATGATTTTTCAAGTCTACCATTT | + |
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Preference number: 1 (lower is better) Translates to: LSTNPRLLKAAHLSI*SQLCSQYDFSSLPF Trigger: AAATGGTAGACTTGAAAAATCATATTGTGAGCATAGTTGAGAGCAAATGGACAAATGGGCTGCTTTCAGTAGCCTGGGATTTGTACTAAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR TCA 90 bp | GTCTGTATAGTGAGAGGAAAGATTCTGAAGTGTTTGTTTTCTATATaGCTGAGAAAAATTCTCCAGAGATCTTGTTGCAACAGACTCAAG | + |
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Preference number: 1 (lower is better) Translates to: VCIVRGKILKCLFSI*LRKILQRSCCNRLK Trigger: CTTGAGTCTGTTGCAACAAGATCTCTGGAGAATTTTTCTCAGTCATATAGAAAACAAACACTTCAGAATCTTTCCTCTCACTATACAGAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR CCA 90 bp | CCCCCTGTTCCAGACAGCACCACTTCTGCCTGCCCCGTCCTGAGACTACAGGTGGGGGAAGGGGCACAGTaGTCTCTGGAGGCTGAGCAG | + |
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Preference number: 2 (lower is better) Translates to: PPVPDSTTSACPVLRLQVGEGAQ*SLEAEQ Trigger: CTGCTCAGCCTCCAGAGACCACTGTGCCCCTTCCCC...CACCTGTAGTCTCAGGACGGGGCAGGCAGAAGTGGTGCTGTCTGGAACAGGGGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR GCA 90 bp | CCCCCTGTTCCAGACAGCACCACTTCTGCCTGCCCCGTCCTGAGACTACAGGTGGTTCACACTCGGCAGTaGCAACGACTTGCCCTGTGC | + |
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Preference number: 2 (lower is better) Translates to: PPVPDSTTSACPVLRLQVVHTRQ*QRLALC Trigger: GCACAGGGCAAGTCGTTGGCACTGCCGAGTGTGAAC...CACCTGTAGTCTCAGGACGGGGCAGGCAGAAGTGGTGCTGTCTGGAACAGGGGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR GCA 90 bp | CCCCCTGTTCCAGACAGCACCACTTCTGCCTGCCCCGTCCTGAGACTACAGGTGGCTTCCACTGCCTCCTaGCCCTTTACAGGTCAATGT | + |
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Preference number: 2 (lower is better) Translates to: PPVPDSTTSACPVLRLQVASTAS*PFTGQC Trigger: ACATTGACCTGTAAAGGGGCAGGAGGCAGTGGAAGC...CACCTGTAGTCTCAGGACGGGGCAGGCAGAAGTGGTGCTGTCTGGAACAGGGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR CCA 90 bp | CCCCCTGTTCCAGACAGCACCACTTCTGCCTGCCCCGTCCTGAGACTACAGGTGACAGAGCCGCAATGCTaGCTGTTGATGATGGAGAGC | + |
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Preference number: 2 (lower is better) Translates to: PPVPDSTTSACPVLRLQVTEPQC*LLMMES Trigger: GCTCTCCATCATCAACAGCCAGCATTGCGGCTCTGT...CACCTGTAGTCTCAGGACGGGGCAGGCAGAAGTGGTGCTGTCTGGAACAGGGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR CAA 90 bp | GCTCCTTCCTATCCTATCATTGTCACAGAGCCGCAATGCTGGCTGTaGATGATGGAGAGCACCACGGGGAAGGGGCACAGTGGTCTCTGG | + |
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Preference number: 2 (lower is better) Translates to: APSYPIIVTEPQCWL*MMESTTGKGHSGLW Trigger: CCAGAGACCACTGTGCCCCTTCCCCGTGGTGCTCTCCATCATCAACAGCCAGCATTGCGGCTCTGTGACAATGATAGGATAGGAAGGAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR GCA 90 bp | CCCCCTGTTCCAGACAGCACCACTTCTGCCTGCCCCGTCCTGAGACTACAGGTGGTAACTGGGAAACCCTaGCTGAATAAGGTGGAAAGA | + |
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Preference number: 2 (lower is better) Translates to: PPVPDSTTSACPVLRLQVVTGKP*LNKVER Trigger: TCTTTCCACCTTATTCAGGCAGGGTTTCCCAGTTAC...CACCTGTAGTCTCAGGACGGGGCAGGCAGAAGTGGTGCTGTCTGGAACAGGGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR CCA 90 bp | CAGCCACAGTGTGCAGCTGGGCAGGTATGTGACAAACAGAATTTGTATGATGAGGGGCACAGTGGTCTCTaGAGGCTGAGCAGCCAGGGC | + |
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Preference number: 2 (lower is better) Translates to: QPQCAAGQVCDKQNLYDEGHSGL*RLSSQG Trigger: GCCCTGGCTGCTCAGCCTCCAGAGACCACTGTGCCC...CTCATCATACAAATTCTGTTTGTCACATACCTGCCCAGCTGCACACTGTGGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR TCA 90 bp | CCCCCTGTTCCAGACAGCACCACTTCTGCCTGCCCCGTCCTGAGACTACAGGTGCAGTGTGTGGAGAGGTaGTTTATAAAGAGAAAGCAG | + |
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Preference number: 2 (lower is better) Translates to: PPVPDSTTSACPVLRLQVQCVER*FIKRKQ Trigger: CTGCTTTCTCTTTATAAATCACCTCTCCACACACTG...CACCTGTAGTCTCAGGACGGGGCAGGCAGAAGTGGTGCTGTCTGGAACAGGGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR CCA 90 bp | CCCCCTGTTCCAGACAGCACCACTTCTGCCTGCCCCGTCCTGAGACTACAGGTGTATCCAAGAAGTGCCTaGACTAGGGAAACACAAACA | + |
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Preference number: 2 (lower is better) Translates to: PPVPDSTTSACPVLRLQVYPRSA*TRETQT Trigger: TGTTTGTGTTTCCCTAGTCCAGGCACTTCTTGGATA...CACCTGTAGTCTCAGGACGGGGCAGGCAGAAGTGGTGCTGTCTGGAACAGGGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR TCA 90 bp | AGCATGAAGAGTACACAGTACCATAGAAGAAGGAAGAAGCGAGCTGAGTGGCTTCCAGGCTGGGATACCTaGGCACCTGTGAGTGGGGTG | + |
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Preference number: 2 (lower is better) Translates to: SMKSTQYHRRRKKRAEWLPGWDT*APVSGV Trigger: CACCCCACTCACAGGTGCTCAGGTATCCCAGCCTGG...AAGCCACTCAGCTCGCTTCTTCCTTCTTCTATGGTACTGTGTACTCTTCATGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR TCA 90 bp | CCCCCTGTTCCAGACAGCACCACTTCTGCCTGCCCCGTCCTGAGACTACAGGTGAGTCAAAGTTCTCTCTaGGGAGATTATGCATATGAC | + |
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Preference number: 2 (lower is better) Translates to: PPVPDSTTSACPVLRLQVSQSSL*GDYAYD Trigger: GTCATATGCATAATCTCCTCAGAGAGAACTTTGACT...CACCTGTAGTCTCAGGACGGGGCAGGCAGAAGTGGTGCTGTCTGGAACAGGGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR TCA 90 bp | CCCCCTGTTCCAGACAGCACCACTTCTGCCTGCCCCGTCCTGAGACTACAGGTGATCTTAGCTCTCAGATaGCACAGGACTTTAATCCTA | + |
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Preference number: 2 (lower is better) Translates to: PPVPDSTTSACPVLRLQVILALR*HRTLIL Trigger: TAGGATTAAAGTCCTGTGTCATCTGAGAGCTAAGAT...CACCTGTAGTCTCAGGACGGGGCAGGCAGAAGTGGTGCTGTCTGGAACAGGGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR GCA 90 bp | CCCCCTGTTCCAGACAGCACCACTTCTGCCTGCCCCGTCCTGAGACTACAGGTGTTCTTGACAGACCTTTaGTATCTTAGCATGAAGAGT | + |
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Preference number: 2 (lower is better) Translates to: PPVPDSTTSACPVLRLQVFLTDL*YLSMKS Trigger: ACTCTTCATGCTAAGATAGCAAAGGTCTGTCAAGAA...CACCTGTAGTCTCAGGACGGGGCAGGCAGAAGTGGTGCTGTCTGGAACAGGGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR TCA 90 bp | AGCTGGAATCAATGTACCAGGCTGGGATACCTGAGCACCTGTGAGTGGGGTGAGAGAGAAGAGCAACTCTaGAGAATGACCAAGGTTACT | + |
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Preference number: 2 (lower is better) Translates to: SWNQCTRLGYLSTCEWGEREEQL*RMTKVT Trigger: AGTAACCTTGGTCATTCTTCAGAGTTGCTCTTCTCT...CTCACCCCACTCACAGGTGCTCAGGTATCCCAGCCTGGTACATTGATTCCAGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR CAA 90 bp | ATGACCAAGGTTACTATAAAGTTCACACTCGGCAGTGCCAACGACTaGCCCTGTGCTCCTTCCTATCCTATCATTGTCACAGAGCCGCAA | + |
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Preference number: 2 (lower is better) Translates to: MTKVTIKFTLGSAND*PCAPSYPIIVTEPQ Trigger: TTGCGGCTCTGTGACAATGATAGGATAGGAAGGAGCACAGGGCAAGTCGTTGGCACTGCCGAGTGTGAACTTTATAGTAACCTTGGTCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR CCA 90 bp | CAGCCACAGTGTGCAGCTGGGCAGGTATGTGACAAACAGAATTTGTATGATGAGCTGAGCACCTGTGAGTaGGGTGAGTTTATTTGGCAA | + |
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Preference number: 2 (lower is better) Translates to: QPQCAAGQVCDKQNLYDELSTCE*GEFIWQ Trigger: TTGCCAAATAAACTCACCCCACTCACAGGTGCTCAG...CTCATCATACAAATTCTGTTTGTCACATACCTGCCCAGCTGCACACTGTGGCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR TCA 90 bp | AGCATGAAGAGTACACAGTACCATAGAAGAAGGAAGAAGCGAGCTGAGTGGCTTATGAGTGAACAACTGTaGTCCAGACAGGCTCTGGAA | + |
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Preference number: 2 (lower is better) Translates to: SMKSTQYHRRRKKRAEWLMSEQL*SRQALE Trigger: TTCCAGAGCCTGTCTGGATCACAGTTGTTCACTCAT...AAGCCACTCAGCTCGCTTCTTCCTTCTTCTATGGTACTGTGTACTCTTCATGCT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR GCA 90 bp | TCCTTTAAGGAGTTTTCTTTGAAATCAACTGCAGCATACAAGGGAACTCTTAAGCAGAGGCCTGAGCTGTaGAGCTGCACATCAGCCTGG | + |
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Preference number: 2 (lower is better) Translates to: SFKEFSLKSTAAYKGTLKQRPEL*SCTSAW Trigger: CCAGGCTGATGTGCAGCTGCACAGCTCAGGCCTCTG...CTTAAGAGTTCCCTTGTATGCTGCAGTTGATTTCAAAGAAAACTCCTTAAAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR CCA 90 bp | TGGAAAGAAACTGAGGAAGATGGCCACCATCACATTCAGGCTTGCCCACCCCAAACACAGAAAGATGCTTaGAAGTGTGTCCTACTTAGT | + |
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Preference number: 2 (lower is better) Translates to: WKETEEDGHHHIQACPPQTQKDA*KCVLLS Trigger: ACTAAGTAGGACACACTTCCAAGCATCTTTCTGTGT...TTGGGGTGGGCAAGCCTGAATGTGATGGTGGCCATCTTCCTCAGTTTCTTTCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR TCA 90 bp | TGGAAAGAAACTGAGGAAGATGGCCACCATCACATTCAGGCTTGCCCACCCCAATGTTTCTGTCAGTTTTaGTATTTCCCAAGCTATCCA | + |
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Preference number: 2 (lower is better) Translates to: WKETEEDGHHHIQACPPQCFCQF*YFPSYP Trigger: TGGATAGCTTGGGAAATATCAAAACTGACAGAAACA...TTGGGGTGGGCAAGCCTGAATGTGATGGTGGCCATCTTCCTCAGTTTCTTTCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR CCA 90 bp | AGCATGAAGAGTACACAGTACCATAGAAGAAGGAAGAAGCGAGCTGAGTGGCTTGTAAGGTTTTGGAGCTaGAATCAATGTACCAGGCTG | + |
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Preference number: 2 (lower is better) Translates to: SMKSTQYHRRRKKRAEWLVRFWS*NQCTRL Trigger: CAGCCTGGTACATTGATTCCAGCTCCAAAACCTTAC...AAGCCACTCAGCTCGCTTCTTCCTTCTTCTATGGTACTGTGTACTCTTCATGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR TCA 90 bp | AGCATGAAGAGTACACAGTACCATAGAAGAAGGAAGAAGCGAGCTGAGTGGCTTATCAACAACAGGAAATaGCAGAGAAATGGTGACCAC | + |
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Preference number: 2 (lower is better) Translates to: SMKSTQYHRRRKKRAEWLINNRK*QRNGDH Trigger: GTGGTCACCATTTCTCTGTCATTTCCTGTTGTTGAT...AAGCCACTCAGCTCGCTTCTTCCTTCTTCTATGGTACTGTGTACTCTTCATGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR CCA 90 bp | AGCATGAAGAGTACACAGTACCATAGAAGAAGGAAGAAGCGAGCTGAGTGGCTTTCAGGGGAGACACTATaGCATATATTACAGAGAAGG | + |
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Preference number: 2 (lower is better) Translates to: SMKSTQYHRRRKKRAEWLSGETL*HILQRR Trigger: CCTTCTCTGTAATATATGCCATAGTGTCTCCCCTGA...AAGCCACTCAGCTCGCTTCTTCCTTCTTCTATGGTACTGTGTACTCTTCATGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR TCA 90 bp | TCATGCCTTAGAATGTTGAATGTAACATTGTATCCATCTTCAGGAAACAAGAACGCTGAGTGGCTTCTGTaGAAGGAAGGTGACAGGGAC | + |
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Preference number: 2 (lower is better) Translates to: SCLRMLNVTLYPSSGNKNAEWLL*KEGDRD Trigger: GTCCCTGTCACCTTCCTTTCACAGAAGCCACTCAGC...GTTCTTGTTTCCTGAAGATGGATACAATGTTACATTCAACATTCTAAGGCATGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR TCA 90 bp | CAGCCACAGTGTGCAGCTGGGCAGGTATGTGACAAACAGAATTTGTATGATGAGTTTGCTATCTTAGCATaGAGAGTACACAGTACCATA | + |
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Preference number: 2 (lower is better) Translates to: QPQCAAGQVCDKQNLYDEFAILA*RVHSTI Trigger: TATGGTACTGTGTACTCTTCATGCTAAGATAGCAAA...CTCATCATACAAATTCTGTTTGTCACATACCTGCCCAGCTGCACACTGTGGCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR GCA 90 bp | TCATGCCTTAGAATGTTGAATGTAACATTGTATCCATCTTCAGGAAACAAGAACCAAGCTCCTGCAGACTaGAGAGGGAAAGGCAGGACA | + |
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Preference number: 2 (lower is better) Translates to: SCLRMLNVTLYPSSGNKNQAPAD*RGKGRT Trigger: TGTCCTGCCTTTCCCTCTGCAGTCTGCAGGAGCTTG...GTTCTTGTTTCCTGAAGATGGATACAATGTTACATTCAACATTCTAAGGCATGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR CCA 90 bp | TCATGCCTTAGAATGTTGAATGTAACATTGTATCCATCTTCAGGAAACAAGAACTTGGCAAGTGAATCTTaGAGACGGTGTGGACTCGGG | + |
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Preference number: 2 (lower is better) Translates to: SCLRMLNVTLYPSSGNKNLASES*RRCGLG Trigger: CCCGAGTCCACACCGTCTCCAAGATTCACTTGCCAA...GTTCTTGTTTCCTGAAGATGGATACAATGTTACATTCAACATTCTAAGGCATGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR GCA 90 bp | TCCTTTAAGGAGTTTTCTTTGAAATCAACTGCAGCATACAAGGGAACTCTTAAGCCCAGCTCATTTCCTTaGAATAACCAGAGAACCCTG | + |
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Preference number: 2 (lower is better) Translates to: SFKEFSLKSTAAYKGTLKPSSFP*NNQRTL Trigger: CAGGGTTCTCTGGTTATTGCAAGGAAATGAGCTGGG...CTTAAGAGTTCCCTTGTATGCTGCAGTTGATTTCAAAGAAAACTCCTTAAAGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR CCA 90 bp | ATTAGAGACGGGATTATTTCTGTTACACAGAAAGATGCTTGGAAGTGTGTCCTAATCTTGGAGACGGTGTaGACTCGGGTAAAAATGCAT | + |
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Preference number: 2 (lower is better) Translates to: IRDGIISVTQKDAWKCVLILETV*TRVKMH Trigger: ATGCATTTTTACCCGAGTCCACACCGTCTCCAAGAT...TAGGACACACTTCCAAGCATCTTTCTGTGTAACAGAAATAATCCCGTCTCTAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR CAA 90 bp | ATACAGCCACAGTGTGCAGCTGGGCAGGTATGTGACAAACAGAATTaGTATGATGAGTTTAAGACTAAGCTGAATTTTTCAAGTAAACGT | + |
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Preference number: 2 (lower is better) Translates to: IQPQCAAGQVCDKQN*YDEFKTKLNFSSKR Trigger: ACGTTTACTTGAAAAATTCAGCTTAGTCTTAAACTCATCATACAAATTCTGTTTGTCACATACCTGCCCAGCTGCACACTGTGGCTGTAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR CAA 90 bp | GCTTTAAACCTTAGTACAAATCCCAGGCTACTGAAAGCAGCCCATTaGTCCATTTGCTCTCAACTATGCTCACAATATGATTTTTCAAGT | + |
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Preference number: 2 (lower is better) Translates to: ALNLSTNPRLLKAAH*SICSQLCSQYDFSS Trigger: ACTTGAAAAATCATATTGTGAGCATAGTTGAGAGCAAATGGACAAATGGGCTGCTTTCAGTAGCCTGGGATTTGTACTAAGGTTTAAAGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR TCA 90 bp | TCATGCCTTAGAATGTTGAATGTAACATTGTATCCATCTTCAGGAAACAAGAACTTGTTCTCTAGTTATTaGAGAAGGACCTCTTGCGGA | + |
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Preference number: 2 (lower is better) Translates to: SCLRMLNVTLYPSSGNKNLFSSY*RRTSCG Trigger: TCCGCAAGAGGTCCTTCTTCAATAACTAGAGAACAA...GTTCTTGTTTCCTGAAGATGGATACAATGTTACATTCAACATTCTAAGGCATGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR CCA 90 bp | TCCTTTAAGGAGTTTTCTTTGAAATCAACTGCAGCATACAAGGGAACTCTTAAGGGCTTTTGGCAATATTaGCCAGATATGCATTATCAA | + |
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Preference number: 2 (lower is better) Translates to: SFKEFSLKSTAAYKGTLKGFWQY*PDMHYQ Trigger: TTGATAATGCATATCTGGCCAATATTGCCAAAAGCC...CTTAAGAGTTCCCTTGTATGCTGCAGTTGATTTCAAAGAAAACTCCTTAAAGGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR CCA 90 bp | TCATGCCTTAGAATGTTGAATGTAACATTGTATCCATCTTCAGGAAACAAGAACTGCCTAGAGTATATGTaGATTCTCAATAAAGCATAC | + |
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Preference number: 2 (lower is better) Translates to: SCLRMLNVTLYPSSGNKNCLEYM*ILNKAY Trigger: GTATGCTTTATTGAGAATCCACATATACTCTAGGCA...GTTCTTGTTTCCTGAAGATGGATACAATGTTACATTCAACATTCTAAGGCATGA 34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR TCA 72 bp | GCACCACGGGGAAGGGGCACAGTGGTCTCTGGAGGCTaGGCAGCCAGGGCGGAATTCTCTGGAGCCACCATG | + |
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Preference number: 3 (lower is better) Translates to: APRGRGTVVSGG*AARAEFSGATM Trigger: CATGGTGGCTCCAGAGAATTCCGCCCTGGCTGCTCAGCCTCCAGAGACCACTGTGCCCCTTCCCCGTGGTGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR CCA 72 bp | GGTCTCTGGAGGCTGAGCAGCCAGGGCGGAATTCTCTaGAGCCACCATGCAATCCCACCAACACCTAGATGC | + |
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Preference number: 3 (lower is better) Translates to: GLWRLSSQGGIL*SHHAIPPTPRC Trigger: GCATCTAGGTGTTGGTGGGATTGCATGGTGGCTCCAGAGAATTCCGCCCTGGCTGCTCAGCCTCCAGAGACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR CCA 72 bp | CCTTCCTATCCTATCATTGTCACAGAGCCGCAATGCTaGCTGTTGATGATGGAGAGCACCACGGGGAAGGGG | + |
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Preference number: 3 (lower is better) Translates to: PSYPIIVTEPQC*LLMMESTTGKG Trigger: CCCCTTCCCCGTGGTGCTCTCCATCATCAACAGCCAGCATTGCGGCTCTGTGACAATGATAGGATAGGAAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR GCA 72 bp | GCTCCTTCCTATCCTATCATTGTCACAGAGCCGCAATaGTGGCTGTTGATGATGGAGAGCACCACGGGGAAG | + |
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Preference number: 3 (lower is better) Translates to: APSYPIIVTEPQ*WLLMMESTTGK Trigger: CTTCCCCGTGGTGCTCTCCATCATCAACAGCCAGCATTGCGGCTCTGTGACAATGATAGGATAGGAAGGAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR TCA 72 bp | CTGTGCAGCTGCACATCAGCCTGGGGCCTTAGATGGTaGATGGTGTGTCTGGCTGATTCTGTGTTCTTGACA | + |
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Preference number: 3 (lower is better) Translates to: LCSCTSAWGLRW*MVCLADSVFLT Trigger: TGTCAAGAACACAGAATCAGCCAGACACACCATTCACCATCTAAGGCCCCAGGCTGATGTGCAGCTGCACAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR GCA 72 bp | AAAGTTCACACTCGGCAGTGCCAACGACTTGCCCTGTaGTCCTTCCTATCCTATCATTGTCACAGAGCCGCA | + |
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Preference number: 3 (lower is better) Translates to: KVHTRQCQRLAL*SFLSYHCHRAA Trigger: TGCGGCTCTGTGACAATGATAGGATAGGAAGGAGCACAGGGCAAGTCGTTGGCACTGCCGAGTGTGAACTTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR CCA 72 bp | GGATACCTGAGCACCTGTGAGTGGGGTGAGTTTATTTaGCAAGTGAATCTTGGAGACGGTGTGGACTCGGGT | + |
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Preference number: 3 (lower is better) Translates to: GYLSTCEWGEFI*QVNLGDGVDSG Trigger: ACCCGAGTCCACACCGTCTCCAAGATTCACTTGCCAAATAAACTCACCCCACTCACAGGTGCTCAGGTATCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR CAA 90 bp | CAGCCACAGTGTGCAGCTGGGCAGGTATGTGACAAACAGAATTTGTATGATGAGCCGCAATGCTGGCTGTaGATGATGGAGAGCACCACG | + |
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Preference number: 3 (lower is better) Translates to: QPQCAAGQVCDKQNLYDEPQCWL*MMESTT Trigger: CGTGGTGCTCTCCATCATCAACAGCCAGCATTGCGG...CTCATCATACAAATTCTGTTTGTCACATACCTGCCCAGCTGCACACTGTGGCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR CAA 90 bp | CAGCCACAGTGTGCAGCTGGGCAGGTATGTGACAAACAGAATTTGTATGATGAGGGCAGTGCCAACGACTaGCCCTGTGCTCCTTCCTAT | + |
|
Preference number: 3 (lower is better) Translates to: QPQCAAGQVCDKQNLYDEGSAND*PCAPSY Trigger: ATAGGAAGGAGCACAGGGCAAGTCGTTGGCACTGCC...CTCATCATACAAATTCTGTTTGTCACATACCTGCCCAGCTGCACACTGTGGCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR CAA 90 bp | TGGAAAGAAACTGAGGAAGATGGCCACCATCACATTCAGGCTTGCCCACCCCAAGCTGATTCTGTGTTCTaGACACCAGTGACTCCGCTT | + |
|
Preference number: 3 (lower is better) Translates to: WKETEEDGHHHIQACPPQADSVF*TPVTPL Trigger: AAGCGGAGTCACTGGTGTCAAGAACACAGAATCAGC...TTGGGGTGGGCAAGCCTGAATGTGATGGTGGCCATCTTCCTCAGTTTCTTTCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR TCA 72 bp | ACTGGGAAACCCTGCCTGAATAAGGTGGAAAGAAACTaGGGAAGATGGCCACCATCACATTCAGGCTTGCCC | + |
|
Preference number: 3 (lower is better) Translates to: TGKPCLNKVERN*GRWPPSHSGLP Trigger: GGGCAAGCCTGAATGTGATGGTGGCCATCTTCCTCAGTTTCTTTCCACCTTATTCAGGCAGGGTTTCCCAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR TCA 72 bp | TTTGGAGCTGGAATCAATGTACCAGGCTGGGATACCTaGGCACCTGTGAGTGGGGTGAGTTTATTTGGCAAG | + |
|
Preference number: 3 (lower is better) Translates to: FGAGINVPGWDT*APVSGVSLFGK Trigger: CTTGCCAAATAAACTCACCCCACTCACAGGTGCTCAGGTATCCCAGCCTGGTACATTGATTCCAGCTCCAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR GCA 72 bp | TTAGTGGGCCTAGTCTCCAAGGCTCACAGGAGATCCTaGGGTTTCTTGACAGACCTTTGCTATCTTAGCATG | + |
|
Preference number: 3 (lower is better) Translates to: LVGLVSKAHRRS*GFLTDLCYLSM Trigger: CATGCTAAGATAGCAAAGGTCTGTCAAGAAACCGCAGGATCTCCTGTGAGCCTTGGAGACTAGGCCCACTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR CCA 72 bp | CAATGTACCAGGCTGGGATACCTGAGCACCTGTGAGTaGGGTGAGTTTATTTGGCAAGTGAATCTTGGAGAC | + |
|
Preference number: 3 (lower is better) Translates to: QCTRLGYLSTCE*GEFIWQVNLGD Trigger: GTCTCCAAGATTCACTTGCCAAATAAACTCACCCCACTCACAGGTGCTCAGGTATCCCAGCCTGGTACATTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR CCA 72 bp | AGAGACGGGATTATTTCTGTTACACAGAAAGATGCTTaGAAGTGTGTCCTACTTAGTGGGCCTAGTCTCCAA | + |
|
Preference number: 3 (lower is better) Translates to: RDGIISVTQKDA*KCVLLSGPSLQ Trigger: TTGGAGACTAGGCCCACTAAGTAGGACACACTTCCAAGCATCTTTCTGTGTAACAGAAATAATCCCGTCTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR TCA 72 bp | CATCTTGCTGGTAATTTTCACTTCAGTCTCTCAGACTaGGTTCCTACACTGAGGAACAGACTATGTGTTGGA | + |
|
Preference number: 3 (lower is better) Translates to: HLAGNFHFSLSD*VPTLRNRLCVG Trigger: TCCAACACATAGTCTGTTCCTCAGTGTAGGAACTCAGTCTGAGAGACTGAAGTGAAAATTACCAGCAAGATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR TCA 72 bp | AATGCATGTCAGTCCCTCCAAAGAGAAGAGCAACTCTaGAGAATGACCAAGGTTACTATAAAGTTCACACTC | + |
|
Preference number: 3 (lower is better) Translates to: NACQSLQREEQL*RMTKVTIKFTL Trigger: GAGTGTGAACTTTATAGTAACCTTGGTCATTCTTCAGAGTTGCTCTTCTCTTTGGAGGGACTGACATGCATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR CAA 90 bp | TCCTTTAAGGAGTTTTCTTTGAAATCAACTGCAGCATACAAGGGAACTCTTAAGCTTCCTATCCTATCATaGTCACAGAGCCGCAATGCT | + |
|
Preference number: 3 (lower is better) Translates to: SFKEFSLKSTAAYKGTLKLPILS*SQSRNA Trigger: AGCATTGCGGCTCTGTGACAATGATAGGATAGGAAG...CTTAAGAGTTCCCTTGTATGCTGCAGTTGATTTCAAAGAAAACTCCTTAAAGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR CCA 72 bp | GACACTATGGCATATATTACAGAGAAGGATCCTTTCTaGCTACTGGTCACTGCTACATTAAGAAACTTGAGT | + |
|
Preference number: 3 (lower is better) Translates to: DTMAYITEKDPF*LLVTATLRNLS Trigger: ACTCAAGTTTCTTAATGTAGCAGTGACCAGTAGCCAGAAAGGATCCTTCTCTGTAATATATGCCATAGTGTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR CAA 90 bp | TCCTTTAAGGAGTTTTCTTTGAAATCAACTGCAGCATACAAGGGAACTCTTAAGGTGTTTCTGTCAGTTTaGATATTTCCCAAGCTATCC | + |
|
Preference number: 3 (lower is better) Translates to: SFKEFSLKSTAAYKGTLKVFLSV*IFPKLS Trigger: GGATAGCTTGGGAAATATCAAAACTGACAGAAACAC...CTTAAGAGTTCCCTTGTATGCTGCAGTTGATTTCAAAGAAAACTCCTTAAAGGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR CAA 90 bp | TCATGCCTTAGAATGTTGAATGTAACATTGTATCCATCTTCAGGAAACAAGAACAATTCTCCAGAGATCTaGTTGCAACAGACTCAAGTA | + |
|
Preference number: 3 (lower is better) Translates to: SCLRMLNVTLYPSSGNKNNSPEI*LQQTQV Trigger: TACTTGAGTCTGTTGCAACAAGATCTCTGGAGAATT...GTTCTTGTTTCCTGAAGATGGATACAATGTTACATTCAACATTCTAAGGCATGA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR-3UTR CAA 90 bp | TCATGCCTTAGAATGTTGAATGTAACATTGTATCCATCTTCAGGAAACAAGAACGGAAACACAAACATCTaGCTGGTAATTTTCACTTCA | + |
|
Preference number: 3 (lower is better) Translates to: SCLRMLNVTLYPSSGNKNGNTNI*LVIFTS Trigger: TGAAGTGAAAATTACCAGCAAGATGTTTGTGTTTCC...GTTCTTGTTTCCTGAAGATGGATACAATGTTACATTCAACATTCTAAGGCATGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR TCA 72 bp | CTTAATGTAGATAATCTTAATGAGATTTGGGACTTCTaGGTCAATAAAATCCAGGTAAGGTTTTGGAGCTGG | + |
|
Preference number: 3 (lower is better) Translates to: LNVDNLNEIWDF*VNKIQVRFWSW Trigger: CCAGCTCCAAAACCTTACCTGGATTTTATTGACTCAGAAGTCCCAAATCTCATTAAGATTATCTACATTAAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR GCA 72 bp | ACGTGTTCACTTTCCACTTACATAGTTCTAAACCGGTaGTACTTCAGTCACAAATTCTGTACTTTCTTATAT | + |
|
Preference number: 3 (lower is better) Translates to: TCSLSTYIVLNR*YFSHKFCTFLY Trigger: ATATAAGAAAGTACAGAATTTGTGACTGAAGTAGCACCGGTTTAGAACTATGTAAGTGGAAAGTGAACACGT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR TCA 72 bp | AACAAAAAGGTATGCATATTCAGTCAAAGTTCTCTCTaGGGAGATTATGCATATGACACAGTTCCTTTTTCT | + |
|
Preference number: 3 (lower is better) Translates to: NKKVCIFSQSSL*GDYAYDTVPFS Trigger: AGAAAAAGGAACTGTGTCATATGCATAATCTCCTCAGAGAGAACTTTGACTGAATATGCATACCTTTTTGTT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR GCA 72 bp | AGAGATGTACTCTTTATCAAAACGGAATGGCATACATaGTTAGTATTACAGAATACAAAGAAAGACAGTCTG | + |
|
Preference number: 3 (lower is better) Translates to: RDVLFIKTEWHT*LVLQNTKKDSL Trigger: CAGACTGTCTTTCTTTGTATTCTGTAATACTAAGCATGTATGCCATTCCGTTTTGATAAAGAGTACATCTCT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| CDS-3UTR TCA 90 bp | CCCCCTGTTCCAGACAGCACCACTTCTGCCTGCCCCGTCCTGAGACTACAGGTGACAGATTCCAAAAACTaGGCATTTGTTGGGTCACTG | + |
|
Preference number: 4 (lower is better) Translates to: PPVPDSTTSACPVLRLQVTDSKN*AFVGSL Trigger: CAGTGACCCAACAAATGCTCAGTTTTTGGAATCTGT...CACCTGTAGTCTCAGGACGGGGCAGGCAGAAGTGGTGCTGTCTGGAACAGGGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR CAA 72 bp | TATCCTATCATTGTCACAGAGCCGCAATGCTGGCTGTaGATGATGGAGAGCACCACGGGGAAGGGGCACAGT | + |
|
Preference number: 4 (lower is better) Translates to: YPIIVTEPQCWL*MMESTTGKGHS Trigger: ACTGTGCCCCTTCCCCGTGGTGCTCTCCATCATCAACAGCCAGCATTGCGGCTCTGTGACAATGATAGGATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| CDS-3UTR TCA 90 bp | ATTAGAGACGGGATTATTTCTGTTACACAGAAAGATGCTTGGAAGTGTGTCCTACCATGGACCAGTCGCTaGAGCTCCAGGGGAGTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: IRDGIISVTQKDAWKCVLPWTSR*SSRGVS Trigger: AGAGACTCCCCTGGAGCTTCAGCGACTGGTCCATGG...TAGGACACACTTCCAAGCATCTTTCTGTGTAACAGAAATAATCCCGTCTCTAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| CDS-3UTR TCA 90 bp | CAGCCACAGTGTGCAGCTGGGCAGGTATGTGACAAACAGAATTTGTATGATGAGCGCAAATTCAGGACGTaGCCGTACTATAAAGTCTCG | + |
|
Preference number: 4 (lower is better) Translates to: QPQCAAGQVCDKQNLYDERKFRT*PYYKVS Trigger: CGAGACTTTATAGTACGGTCACGTCCTGAATTTGCG...CTCATCATACAAATTCTGTTTGTCACATACCTGCCCAGCTGCACACTGTGGCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| CDS-3UTR TCA 90 bp | TGGAAAGAAACTGAGGAAGATGGCCACCATCACATTCAGGCTTGCCCACCCCAAAGCTGCATTCAGTATTaGTTTATCCTCTTCTTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: WKETEEDGHHHIQACPPQSCIQY*FILFFW Trigger: CCAGAAGAAGAGGATAAATCAATACTGAATGCAGCT...TTGGGGTGGGCAAGCCTGAATGTGATGGTGGCCATCTTCCTCAGTTTCTTTCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR CAA 72 bp | GTTACTATAAAGTTCACACTCGGCAGTGCCAACGACTaGCCCTGTGCTCCTTCCTATCCTATCATTGTCACA | + |
|
Preference number: 4 (lower is better) Translates to: VTIKFTLGSAND*PCAPSYPIIVT Trigger: TGTGACAATGATAGGATAGGAAGGAGCACAGGGCAAGTCGTTGGCACTGCCGAGTGTGAACTTTATAGTAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR CAA 72 bp | CTAGTCTCCAAGGCTCACAGGAGATCCTGCGGTTTCTaGACAGACCTTTGCTATCTTAGCATGAAGAGTACA | + |
|
Preference number: 4 (lower is better) Translates to: LVSKAHRRSCGF*TDLCYLSMKST Trigger: TGTACTCTTCATGCTAAGATAGCAAAGGTCTGTCAAGAAACCGCAGGATCTCCTGTGAGCCTTGGAGACTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| CDS-3UTR GCA 90 bp | GTCAGTTTTGATATTTCCCAAGCTATCCAAGAAGTGCCTGGACTAGGGAAACACAGCTCCATGTTCCCTTaGCTCTTTGAAAAGTTCATT | + |
|
Preference number: 4 (lower is better) Translates to: VSFDISQAIQEVPGLGKHSSMFP*LFEKFI Trigger: AATGAACTTTTCAAAGAGGCAAGGGAACATGGAGCT...GTGTTTCCCTAGTCCAGGCACTTCTTGGATAGCTTGGGAAATATCAAAACTGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| CDS-3UTR CCA 90 bp | ATTAGAGACGGGATTATTTCTGTTACACAGAAAGATGCTTGGAAGTGTGTCCTATTTATCCTCTTCTTCTaGGGAGGAAGGAGTACTGAC | + |
|
Preference number: 4 (lower is better) Translates to: IRDGIISVTQKDAWKCVLFILFF*GGRSTD Trigger: GTCAGTACTCCTTCCTCCCCAGAAGAAGAGGATAAA...TAGGACACACTTCCAAGCATCTTTCTGTGTAACAGAAATAATCCCGTCTCTAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| CDS-3UTR TCA 90 bp | ATTAGAGACGGGATTATTTCTGTTACACAGAAAGATGCTTGGAAGTGTGTCCTATCCTCCACCTGTAAATaGCTTAGTTTTGTCTTCCCT | + |
|
Preference number: 4 (lower is better) Translates to: IRDGIISVTQKDAWKCVLSSTCK*LSFVFP Trigger: AGGGAAGACAAAACTAAGTCATTTACAGGTGGAGGA...TAGGACACACTTCCAAGCATCTTTCTGTGTAACAGAAATAATCCCGTCTCTAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| CDS-3UTR GCA 90 bp | TTTGATATTTCCCAAGCTATCCAAGAAGTGCCTGGACTAGGGAAACACAAACATCAGGCTTGGAAGACTTaGATTTCATTTCATCTTCAT | + |
|
Preference number: 4 (lower is better) Translates to: FDISQAIQEVPGLGKHKHQAWKT*ISFHLH Trigger: ATGAAGATGAAATGAAATGCAAGTCTTCCAAGCCTG...ATGTTTGTGTTTCCCTAGTCCAGGCACTTCTTGGATAGCTTGGGAAATATCAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| CDS-3UTR CCA 90 bp | ATTAGAGACGGGATTATTTCTGTTACACAGAAAGATGCTTGGAAGTGTGTCCTATGGATCTGTCAGGCTTaGAAGACTTGCATTTCATTT | + |
|
Preference number: 4 (lower is better) Translates to: IRDGIISVTQKDAWKCVLWICQA*KTCISF Trigger: AAATGAAATGCAAGTCTTCCAAGCCTGACAGATCCA...TAGGACACACTTCCAAGCATCTTTCTGTGTAACAGAAATAATCCCGTCTCTAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| 3UTR CAA 72 bp | CAGTGTGCAGCTGGGCAGGTATGTGACAAACAGAATTaGTATGATGAGTTTAAGACTAAGCTGAATTTTTCA | + |
|
Preference number: 4 (lower is better) Translates to: QCAAGQVCDKQN*YDEFKTKLNFS Trigger: TGAAAAATTCAGCTTAGTCTTAAACTCATCATACAAATTCTGTTTGTCACATACCTGCCCAGCTGCACACTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| CDS-3UTR TCA 90 bp | TCCTTTAAGGAGTTTTCTTTGAAATCAACTGCAGCATACAAGGGAACTCTTAAGTTCCCAGTTGGAGGTTaGACTATATGTAATCCATCA | + |
|
Preference number: 4 (lower is better) Translates to: SFKEFSLKSTAAYKGTLKFPVGG*TICNPS Trigger: TGATGGATTACATATAGTTCAACCTCCAACTGGGAA...CTTAAGAGTTCCCTTGTATGCTGCAGTTGATTTCAAAGAAAACTCCTTAAAGGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| CDS-3UTR CAA 90 bp | AGCATGAAGAGTACACAGTACCATAGAAGAAGGAAGAAGCGAGCTGAGTGGCTTGTGGGCTCCTACAGGTaGCAGGTGTGGATCTGTCAG | + |
|
Preference number: 5 (lower is better) Translates to: SMKSTQYHRRRKKRAEWLVGSYR*QVWICQ Trigger: CTGACAGATCCACACCTGCAACCTGTAGGAGCCCAC...AAGCCACTCAGCTCGCTTCTTCCTTCTTCTATGGTACTGTGTACTCTTCATGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| CDS-3UTR CAA 90 bp | AGCTGGAATCAATGTACCAGGCTGGGATACCTGAGCACCTGTGAGTGGGGTGAGTCAGGCTTGGAAGACTaGCATTTCATTTCATCTTCA | + |
|
Preference number: 5 (lower is better) Translates to: SWNQCTRLGYLSTCEWGESGLED*HFISSS Trigger: TGAAGATGAAATGAAATGCAAGTCTTCCAAGCCTGA...CTCACCCCACTCACAGGTGCTCAGGTATCCCAGCCTGGTACATTGATTCCAGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| CDS TCA 90 bp | TTGTGGCTTCGTTTAGAGGGACAGCTCCATGTTCCCTTGCCTCTTTaGAAAGTTCATTCACAATTTTCCCAGTTGGAGGTTGAACTATAT | + |
|
Preference number: 5 (lower is better) Translates to: LWLRLEGQLHVPLPL*KVHSQFSQLEVELY Trigger: ATATAGTTCAACCTCCAACTGGGAAAATTGTGAATGAACTTTTCAAAGAGGCAAGGGAACATGGAGCTGTCCCTCTAAACGAAGCCACAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| CDS-3UTR CAA 90 bp | ATTAGAGACGGGATTATTTCTGTTACACAGAAAGATGCTTGGAAGTGTGTCCTACTTCCCTTGAAGATCTaGTGGCTTCGTTTAGAGGGA | + |
|
Preference number: 5 (lower is better) Translates to: IRDGIISVTQKDAWKCVLLPLKI*WLRLEG Trigger: TCCCTCTAAACGAAGCCACAAGATCTTCAAGGGAAG...TAGGACACACTTCCAAGCATCTTTCTGTGTAACAGAAATAATCCCGTCTCTAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| CDS-3UTR CAA 90 bp | TCCTTTAAGGAGTTTTCTTTGAAATCAACTGCAGCATACAAGGGAACTCTTAAGCCAAAAACTGAGCATTaGTTGGGTCACTGTAAGGCC | + |
|
Preference number: 5 (lower is better) Translates to: SFKEFSLKSTAAYKGTLKPKTEH*LGHCKA Trigger: GGCCTTACAGTGACCCAACAAATGCTCAGTTTTTGG...CTTAAGAGTTCCCTTGTATGCTGCAGTTGATTTCAAAGAAAACTCCTTAAAGGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| CDS-3UTR CAA 90 bp | AGCTATCAATACAAGCCAGCCCTACAACTAAGAATTCAAACATCAAGATCTATCGTGGATCTGTCAGGCTaGGAAGACTTGCATTTCATT | + |
|
Preference number: 5 (lower is better) Translates to: SYQYKPALQLRIQTSRSIVDLSG*EDLHFI Trigger: AATGAAATGCAAGTCTTCCAAGCCTGACAGATCCAC...GATAGATCTTGATGTTTGAATTCTTAGTTGTAGGGCTGGCTTGTATTGATAGCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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| CDS-3UTR CAA 90 bp | TCCTTTAAGGAGTTTTCTTTGAAATCAACTGCAGCATACAAGGGAACTCTTAAGTCACAATTTTCCCAGTaGGAGGTTGAACTATATGTA | + |
|
Preference number: 5 (lower is better) Translates to: SFKEFSLKSTAAYKGTLKSQFSQ*EVELYV Trigger: TACATATAGTTCAACCTCCAACTGGGAAAATTGTGA...CTTAAGAGTTCCCTTGTATGCTGCAGTTGATTTCAAAGAAAACTCCTTAAAGGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
||
| CDS CCA 72 bp | CCAACTGTAAGTCCCGCGCACTTGGGGGCCGTGGCCTaGAGGACCCACGCTCCTGCTCCTCCGGCTCCGCAC | + |
|
Preference number: 6 (lower is better) Translates to: PTVSPAHLGAVA*RTHAPAPPAPH Trigger: GTGCGGAGCCGGAGGAGCAGGAGCGTGGGTCCTCCAGGCCACGGCCCCCAAGTGCGCGGGACTTACAGTTGG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
||
| CDS GCA 72 bp | AAGCCGATGTGGCGGTGTTCGTGGGCTCCTACAGGTTaGAGGTGTGGATCTGTCAGGCTTGGAAGACTTGCA | + |
|
Preference number: 6 (lower is better) Translates to: KPMWRCSWAPTG*RCGSVRLGRLA Trigger: TGCAAGTCTTCCAAGCCTGACAGATCCACACCTGCAACCTGTAGGAGCCCACGAACACCGCCACATCGGCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
||
| CDS CAA 72 bp | AAAGCCGATGTGGCGGTGTTCGTGGGCTCCTACAGGTaGCAGGTGTGGATCTGTCAGGCTTGGAAGACTTGC | + |
|
Preference number: 6 (lower is better) Translates to: KADVAVFVGSYR*QVWICQAWKTC Trigger: GCAAGTCTTCCAAGCCTGACAGATCCACACCTGCAACCTGTAGGAGCCCACGAACACCGCCACATCGGCTTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
||
| CDS CCA 72 bp | GTGGCGGTGTTCGTGGGCTCCTACAGGTTGCAGGTGTaGATCTGTCAGGCTTGGAAGACTTGCATTTCATTT | + |
|
Preference number: 6 (lower is better) Translates to: VAVFVGSYRLQV*ICQAWKTCISF Trigger: AAATGAAATGCAAGTCTTCCAAGCCTGACAGATCCACACCTGCAACCTGTAGGAGCCCACGAACACCGCCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029907.6 |
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