Pregenerated sensors for UBXN1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071655Ensembl transcript IDs: ENSMUST00000096255.7, ENSMUST00000166407.9, ENSMUST00000238036.2
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AATCCTAGACAAACCTATTGCAAACTGAAAAGGTCCTACTTTAACTaGCCTCCCTTTATCTTCTCATATTGCCCTTCTCAGAAAGGCAGT | + |
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Preference number: 1 (lower is better) Translates to: NPRQTYCKLKRSYFN*PPFIFSYCPSQKGS Trigger: ACTGCCTTTCTGAGAAGGGCAATATGAGAAGATAAAGGGAGGGCAGTTAAAGTAGGACCTTTTCAGTTTGCAATAGGTTTGTCTAGGATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238036.2 |
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| 3UTR GCA 72 bp | CAAACCTATTGCAAACTGAAAAGGTCCTACTTTAACTaGCCTCCCTTTATCTTCTCATATTGCCCTTCTCAG | + |
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Preference number: 3 (lower is better) Translates to: QTYCKLKRSYFN*PPFIFSYCPSQ Trigger: CTGAGAAGGGCAATATGAGAAGATAAAGGGAGGGCAGTTAAAGTAGGACCTTTTCAGTTTGCAATAGGTTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238036.2 |
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| CDS-3UTR TCA 90 bp | CCCTTTATCTTCTCATATTGCCCTTCTCAGAAAGGCAGTTCTGGAAGGAGCCAGTGCCCTGGTTCCCTGTaGGGGCCAGAGCCTTCTCCG | + |
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Preference number: 4 (lower is better) Translates to: PFIFSYCPSQKGSSGRSQCPGSL*GPEPSP Trigger: CGGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCA...CTGGCTCCTTCCAGAACTGCCTTTCTGAGAAGGGCAATATGAGAAGATAAAGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238036.2 |
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| CDS-3UTR GCA 90 bp | CTGCCCTCCCTTTATCTTCTCATATTGCCCTTCTCAGAAAGGCAGTTCTGGAAGGTAGAGCCTCACAGCTaGCAGCTGTTCCCGGGCCCG | + |
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Preference number: 4 (lower is better) Translates to: LPSLYLLILPFSERQFWKVEPHS*QLFPGP Trigger: CGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTAC...CTTCCAGAACTGCCTTTCTGAGAAGGGCAATATGAGAAGATAAAGGGAGGGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238036.2 |
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| CDS-3UTR CCA 90 bp | CCCTTTATCTTCTCATATTGCCCTTCTCAGAAAGGCAGTTCTGGAAGGAGCCAGCTTGCTCTGAGGGCGTaGGTTCTCGTCCCAGGACAT | + |
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Preference number: 4 (lower is better) Translates to: PFIFSYCPSQKGSSGRSQLALRA*VLVPGH Trigger: ATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAG...CTGGCTCCTTCCAGAACTGCCTTTCTGAGAAGGGCAATATGAGAAGATAAAGGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238036.2 |
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| CDS-3UTR TCA 90 bp | AATCCTAGACAAACCTATTGCAAACTGAAAAGGTCCTACTTTAACTGCCCTCCCGTCCCAGGACATGGCTaGGGGGAGTCTCCAGAGGCT | + |
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Preference number: 4 (lower is better) Translates to: NPRQTYCKLKRSYFNCPPVPGHG*GESPEA Trigger: AGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGAC...GGGAGGGCAGTTAAAGTAGGACCTTTTCAGTTTGCAATAGGTTTGTCTAGGATT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000238036.2 |
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| CDS-3UTR TCA 90 bp | CCCTCCCTTTATCTTCTCATATTGCCCTTCTCAGAAAGGCAGTTCTGGAAGGAGGAAAGTCTGGGTCAGTaGAGTCCCATCAGGCAGCCT | + |
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Preference number: 4 (lower is better) Translates to: PSLYLLILPFSERQFWKEESLGQ*SPIRQP Trigger: AGGCTGCCTGATGGGACTTCACTGACCCAGACTTTC...CTCCTTCCAGAACTGCCTTTCTGAGAAGGGCAATATGAGAAGATAAAGGGAGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238036.2 |
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| CDS-3UTR TCA 90 bp | ACTGCCCTCCCTTTATCTTCTCATATTGCCCTTCTCAGAAAGGCAGTTCTGGAAGAAAGCCCATCTCGATaGGGCTCTCCAGAGCCGTCA | + |
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Preference number: 4 (lower is better) Translates to: TALPLSSHIALLRKAVLEESPSR*GSPEPS Trigger: TGACGGCTCTGGAGAGCCTCATCGAGATGGGCTTTC...TTCCAGAACTGCCTTTCTGAGAAGGGCAATATGAGAAGATAAAGGGAGGGCAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238036.2 |
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| CDS-3UTR CCA 90 bp | AATCCTAGACAAACCTATTGCAAACTGAAAAGGTCCTACTTTAACTGCCCTCCCGCAGCCTCGATGCCCTaGTTCCCTGTGAGGGCCAGA | + |
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Preference number: 4 (lower is better) Translates to: NPRQTYCKLKRSYFNCPPAASMP*FPVRAR Trigger: TCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGC...GGGAGGGCAGTTAAAGTAGGACCTTTTCAGTTTGCAATAGGTTTGTCTAGGATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238036.2 |
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| CDS-3UTR TCA 90 bp | CCAGGCATATACAGAACTCAAAGGGTCTATTTATTAGGAAGGAAACGTCAGTGCGTCTGGGGAAGCCACTaGGCAACTGCACAGGGTCCT | + |
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Preference number: 4 (lower is better) Translates to: PGIYRTQRVYLLGRKRQCVWGSH*ATAQGP Trigger: AGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGAC...GCACTGACGTTTCCTTCCTAATAAATAGACCCTTTGAGTTCTGTATATGCCTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238036.2 |
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| CDS-3UTR TCA 90 bp | CCCTCCCTTTATCTTCTCATATTGCCCTTCTCAGAAAGGCAGTTCTGGAAGGAGACTTCTTGGCCACAATaGGGACAGCAGAAGGCACGA | + |
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Preference number: 4 (lower is better) Translates to: PSLYLLILPFSERQFWKETSWPQ*GQQKAR Trigger: TCGTGCCTTCTGCTGTCCTCATTGTGGCCAAGAAGT...CTCCTTCCAGAACTGCCTTTCTGAGAAGGGCAATATGAGAAGATAAAGGGAGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238036.2 |
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| CDS-3UTR TCA 90 bp | CTGCCCTCCCTTTATCTTCTCATATTGCCCTTCTCAGAAAGGCAGTTCTGGAAGTTTCTGTCGTGCAACTaGCAGCTCTTGCCCTTGTCT | + |
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Preference number: 4 (lower is better) Translates to: LPSLYLLILPFSERQFWKFLSCN*QLLPLS Trigger: AGACAAGGGCAAGAGCTGTCAGTTGCACGACAGAAA...CTTCCAGAACTGCCTTTCTGAGAAGGGCAATATGAGAAGATAAAGGGAGGGCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238036.2 |
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| CDS-3UTR GCA 90 bp | CTGGAAGGAGCCAGGCATATACAGAACTCAAAGGGTCTATTTATTAGGAAGGAAGCAACTGACAGCTCTTaGCCTTGTCTCCTCCGCTGC | + |
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Preference number: 4 (lower is better) Translates to: LEGARHIQNSKGLFIRKEATDSS*PCLLRC Trigger: GCAGCGGAGGAGACAAGGGCAAGAGCTGTCAGTTGC...TTCCTTCCTAATAAATAGACCCTTTGAGTTCTGTATATGCCTGGCTCCTTCCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238036.2 |
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| CDS-3UTR CCA 90 bp | AATCCTAGACAAACCTATTGCAAACTGAAAAGGTCCTACTTTAACTGCCCTCCCCGGGCCCGGAAAGTCTaGGTCAGTGAAGTCCCATCA | + |
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Preference number: 4 (lower is better) Translates to: NPRQTYCKLKRSYFNCPPRARKV*VSEVPS Trigger: TGATGGGACTTCACTGACCCAGACTTTCCGGGCCCG...GGGAGGGCAGTTAAAGTAGGACCTTTTCAGTTTGCAATAGGTTTGTCTAGGATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238036.2 |
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| CDS-3UTR CCA 90 bp | CCCTTTATCTTCTCATATTGCCCTTCTCAGAAAGGCAGTTCTGGAAGGAGCCAGCCTCTTCAGTCAAAATaGGTCTGCTTTCTCCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: PFIFSYCPSQKGSSGRSQPLQSK*VCFLQQ Trigger: CTGCTGGAGAAAGCAGACCCATTTTGACTGAAGAGG...CTGGCTCCTTCCAGAACTGCCTTTCTGAGAAGGGCAATATGAGAAGATAAAGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238036.2 |
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| CDS-3UTR CCA 90 bp | CTGGAAGGAGCCAGGCATATACAGAACTCAAAGGGTCTATTTATTAGGAAGGAAAGAAGGAACAGGACCTaGGTCTGTTGCTGGTGGGGA | + |
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Preference number: 4 (lower is better) Translates to: LEGARHIQNSKGLFIRKERRNRT*VCCWWG Trigger: TCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCT...TTCCTTCCTAATAAATAGACCCTTTGAGTTCTGTATATGCCTGGCTCCTTCCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238036.2 |
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| CDS-3UTR TCA 90 bp | CTGGAAGGAGCCAGGCATATACAGAACTCAAAGGGTCTATTTATTAGGAAGGAATTCCATATCAGCCTCTaGGAAAGCCCGTCTGGGGAA | + |
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Preference number: 4 (lower is better) Translates to: LEGARHIQNSKGLFIRKEFHISL*ESPSGE Trigger: TTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAA...TTCCTTCCTAATAAATAGACCCTTTGAGTTCTGTATATGCCTGGCTCCTTCCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238036.2 |
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| CDS-3UTR GCA 90 bp | CCAGGCATATACAGAACTCAAAGGGTCTATTTATTAGGAAGGAAACGTCAGTGCTCGGGGTCGTCTTCATaGTCCATCAGCCAATCCATC | + |
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Preference number: 4 (lower is better) Translates to: PGIYRTQRVYLLGRKRQCSGSSS*SISQSI Trigger: GATGGATTGGCTGATGGAGCATGAAGACGACCCCGA...GCACTGACGTTTCCTTCCTAATAAATAGACCCTTTGAGTTCTGTATATGCCTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238036.2 |
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| CDS-3UTR CCA 90 bp | AAGCAGCTAGTCAATCCTAGACAAACCTATTGCAAACTGAAAAGGTCCTACTTTTCTCGTCCCAGGACATaGCTGAGGGGAGTCTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: KQLVNPRQTYCKLKRSYFSRPRT*LRGVSR Trigger: TCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGA...AAAGTAGGACCTTTTCAGTTTGCAATAGGTTTGTCTAGGATTGACTAGCTGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000238036.2 |
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| CDS-3UTR GCA 90 bp | AATCCTAGACAAACCTATTGCAAACTGAAAAGGTCCTACTTTAACTGCCCTCCCCAGTCAAAATGGGTCTaGTTTCTCCAGCAGCAGACC | + |
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Preference number: 4 (lower is better) Translates to: NPRQTYCKLKRSYFNCPPQSKWV*FLQQQT Trigger: GGTCTGCTGCTGGAGAAAGCAGACCCATTTTGACTG...GGGAGGGCAGTTAAAGTAGGACCTTTTCAGTTTGCAATAGGTTTGTCTAGGATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000238036.2 |
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| CDS-3UTR GCA 90 bp | AAGGAGCCAGGCATATACAGAACTCAAAGGGTCTATTTATTAGGAAGGAAACGTACGAGTCCCAGTTCCTaGAGAGGCCGTTCCATATCA | + |
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Preference number: 4 (lower is better) Translates to: KEPGIYRTQRVYLLGRKRTSPSS*RGRSIS Trigger: TGATATGGAACGGCCTCTGCAGGAACTGGGACTCGT...ACGTTTCCTTCCTAATAAATAGACCCTTTGAGTTCTGTATATGCCTGGCTCCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238036.2 |
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| CDS-3UTR CCA 90 bp | TGCCCTTCTCAGAAAGGCAGTTCTGGAAGGAGCCAGGCATATACAGAACTCAAAGTTCCAACATTCTCTTaGTCTGTTCTTGTCTCTCCT | + |
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Preference number: 4 (lower is better) Translates to: CPSQKGSSGRSQAYTELKVPTFS*SVLVSP Trigger: AGGAGAGACAAGAACAGACCAAGAGAATGTTGGAAC...TTTGAGTTCTGTATATGCCTGGCTCCTTCCAGAACTGCCTTTCTGAGAAGGGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238036.2 |
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| CDS-3UTR GCA 90 bp | CTGGAAGGAGCCAGGCATATACAGAACTCAAAGGGTCTATTTATTAGGAAGGAACGCATCTCATCTTCCTaGAGTTTCTGTCGTGCAACT | + |
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Preference number: 4 (lower is better) Translates to: LEGARHIQNSKGLFIRKERISSS*SFCRAT Trigger: AGTTGCACGACAGAAACTGCAGGAAGATGAGATGCG...TTCCTTCCTAATAAATAGACCCTTTGAGTTCTGTATATGCCTGGCTCCTTCCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238036.2 |
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| CDS-3UTR CCA 90 bp | AAGGAGCCAGGCATATACAGAACTCAAAGGGTCTATTTATTAGGAAGGAAACGTTACCACCATACTTCTTaGCTCTCTCTGCTTTGTCCC | + |
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Preference number: 4 (lower is better) Translates to: KEPGIYRTQRVYLLGRKRYHHTS*LSLLCP Trigger: GGGACAAAGCAGAGAGAGCCAAGAAGTATGGTGGTA...ACGTTTCCTTCCTAATAAATAGACCCTTTGAGTTCTGTATATGCCTGGCTCCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238036.2 |
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| CDS-3UTR CCA 90 bp | GGAGCCAGGCATATACAGAACTCAAAGGGTCTATTTATTAGGAAGGAAACGTCAACCTGTATACGACACTaGTCATACTCCCGCTTAGTA | + |
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Preference number: 4 (lower is better) Translates to: GARHIQNSKGLFIRKETSTCIRH*SYSRLV Trigger: TACTAAGCGGGAGTATGACCAGTGTCGTATACAGGT...TGACGTTTCCTTCCTAATAAATAGACCCTTTGAGTTCTGTATATGCCTGGCTCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238036.2 |
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| CDS-3UTR GCA 90 bp | AAGGAGCCAGGCATATACAGAACTCAAAGGGTCTATTTATTAGGAAGGAAACGTTTCCCGCTGCTTTTGTaGCACAAGTTCCAACATTCT | + |
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Preference number: 4 (lower is better) Translates to: KEPGIYRTQRVYLLGRKRFPLLL*HKFQHS Trigger: AGAATGTTGGAACTTGTGGCACAAAAGCAGCGGGAA...ACGTTTCCTTCCTAATAAATAGACCCTTTGAGTTCTGTATATGCCTGGCTCCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238036.2 |
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| CDS CCA 90 bp | TCGTCTTCATGCTCCATCAGCCAATCCATCGCAGCCTCGATGCCCTaGTTCCCTGTGAGGGCCAGAGCCTTCTCCGCGCGTCCCCTGGGA | + |
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Preference number: 5 (lower is better) Translates to: SSSCSISQSIAASMP*FPVRARAFSARPLG Trigger: TCCCAGGGGACGCGCGGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTGGCTGATGGAGCATGAAGACGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166407.9 ENSMUST00000238036.2 |
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| CDS TCA 90 bp | GCTTTCTCCAGCAGCAGACCCAGAGCCTTCAGGGCCAACTTGCTCTaGGGGCGTGGGTTCTCGTCCCAGGACATGGCTGAGGGGAGTCTC | + |
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Preference number: 5 (lower is better) Translates to: AFSSSRPRAFRANLL*GRGFSSQDMAEGSL Trigger: GAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAGGCTCTGGGTCTGCTGCTGGAGAAAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000096255.7 ENSMUST00000166407.9 ENSMUST00000238036.2 |
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| CDS GCA 90 bp | GGTCTGCTTTCTCCAGCAGCAGACCCAGAGCCTTCAGGGCCAACTTaGTCTGAGGGCGTGGGTTCTCGTCCCAGGACATGGCTGAGGGGA | + |
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Preference number: 5 (lower is better) Translates to: GLLSPAADPEPSGPT*SEGVGSRPRTWLRG Trigger: TCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAGGCTCTGGGTCTGCTGCTGGAGAAAGCAGACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000096255.7 ENSMUST00000166407.9 ENSMUST00000238036.2 |
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| CDS TCA 90 bp | AGGCACGAGTCCCAGTTCCTGCAGAGGCCGTTCCATATCAGCCTCTaGGAAAGCCCGTCTGGGGAAGCCACTGAGCAACTGCACAGGGTC | + |
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Preference number: 5 (lower is better) Translates to: RHESQFLQRPFHISL*ESPSGEATEQLHRV Trigger: GACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGGGACTCGTGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000096255.7 ENSMUST00000166407.9 ENSMUST00000238036.2 |
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| CDS GCA 90 bp | TTTTCCCTCCTGCGCTCCTCCGCAGCCCGGCGCATCTCATCTTCCTaGAGTTTCTGTCGTGCAACTGACAGCTCTTGCCCTTGTCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: FSLLRSSAARRISSS*SFCRATDSSCPCLL Trigger: GAGGAGACAAGGGCAAGAGCTGTCAGTTGCACGACAGAAACTGCAGGAAGATGAGATGCGCCGGGCTGCGGAGGAGCGCAGGAGGGAAAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000096255.7 ENSMUST00000166407.9 ENSMUST00000238036.2 |
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| CDS TCA 90 bp | CCTCACAGCTGCCAGCTGTTCCCGGGCCCGGAAAGTCTGGGTCAGTaGAGTCCCATCAGGCAGCCTAACCTGTATACGACACTGGTCATA | + |
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Preference number: 5 (lower is better) Translates to: PHSCQLFPGPESLGQ*SPIRQPNLYTTLVI Trigger: TATGACCAGTGTCGTATACAGGTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000096255.7 ENSMUST00000166407.9 ENSMUST00000238036.2 |
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| CDS GCA 90 bp | CTCGAACCCTTTGTCTGGCAGCTAACTCTTCAGCCTTTTCCCTCCTaGGCTCCTCCGCAGCCCGGCGCATCTCATCTTCCTGCAGTTTCT | + |
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Preference number: 5 (lower is better) Translates to: LEPFVWQLTLQPFPS*APPQPGASHLPAVS Trigger: AGAAACTGCAGGAAGATGAGATGCGCCGGGCTGCGGAGGAGCGCAGGAGGGAAAAGGCTGAAGAGTTAGCTGCCAGACAAAGGGTTCGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000096255.7 ENSMUST00000166407.9 ENSMUST00000238036.2 |
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| CDS TCA 90 bp | GCTGGGAGAAGAAGGAACAGGACCTGGGTCTGTTGCTGGTGGGGATaGCCGAGAACCCACACTACCACCATACTTCTTGGCTCTCTCTGC | + |
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Preference number: 5 (lower is better) Translates to: AGRRRNRTWVCCWWG*PRTHTTTILLGSLC Trigger: GCAGAGAGAGCCAAGAAGTATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000096255.7 ENSMUST00000166407.9 ENSMUST00000238036.2 |
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| CDS-3UTR CAA 90 bp | TCCCTTTATCTTCTCATATTGCCCTTCTCAGAAAGGCAGTTCTGGAAGGAGCCACAGGACCTGGGTCTGTaGCTGGTGGGGATGACCGAG | + |
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Preference number: 5 (lower is better) Translates to: SLYLLILPFSERQFWKEPQDLGL*LVGMTE Trigger: CTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTG...TGGCTCCTTCCAGAACTGCCTTTCTGAGAAGGGCAATATGAGAAGATAAAGGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238036.2 |
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| CDS GCA 90 bp | CGCATCTCATCTTCCTGCAGTTTCTGTCGTGCAACTGACAGCTCTTaGCCTTGTCTCCTCCGCTGCTTTTCTCGTTCTAAAGCTTCTCGC | + |
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Preference number: 5 (lower is better) Translates to: RISSSCSFCRATDSS*PCLLRCFSRSKASR Trigger: GCGAGAAGCTTTAGAACGAGAAAAGCAGCGGAGGAGACAAGGGCAAGAGCTGTCAGTTGCACGACAGAAACTGCAGGAAGATGAGATGCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000096255.7 ENSMUST00000166407.9 ENSMUST00000238036.2 |
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| CDS CCA 90 bp | CCAACATTCTCTTGGTCTGTTCTTGTCTCTCCTCTTCAGTCAAAATaGGTCTGCTTTCTCCAGCAGCAGACCCAGAGCCTTCAGGGCCAA | + |
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Preference number: 5 (lower is better) Translates to: PTFSWSVLVSPLQSK*VCFLQQQTQSLQGQ Trigger: TTGGCCCTGAAGGCTCTGGGTCTGCTGCTGGAGAAAGCAGACCCATTTTGACTGAAGAGGAGAGACAAGAACAGACCAAGAGAATGTTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000096255.7 ENSMUST00000166407.9 ENSMUST00000238036.2 |
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| CDS-3UTR CAA 90 bp | TCTCATATTGCCCTTCTCAGAAAGGCAGTTCTGGAAGGAGCCAGGCATATACAGCTACCACCATACTTCTaGGCTCTCTCTGCTTTGTCC | + |
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Preference number: 5 (lower is better) Translates to: SHIALLRKAVLEGARHIQLPPYF*ALSALS Trigger: GGACAAAGCAGAGAGAGCCAAGAAGTATGGTGGTAG...CTGTATATGCCTGGCTCCTTCCAGAACTGCCTTTCTGAGAAGGGCAATATGAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238036.2 |
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| CDS-3UTR CAA 90 bp | CCCTCCCTTTATCTTCTCATATTGCCCTTCTCAGAAAGGCAGTTCTGGAAGGAGAGTTCCAACATTCTCTaGGTCTGTTCTTGTCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: PSLYLLILPFSERQFWKESSNIL*VCSCLS Trigger: GGAGAGACAAGAACAGACCAAGAGAATGTTGGAACT...CTCCTTCCAGAACTGCCTTTCTGAGAAGGGCAATATGAGAAGATAAAGGGAGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238036.2 |
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| CDS-3UTR CAA 90 bp | CCAGGCATATACAGAACTCAAAGGGTCTATTTATTAGGAAGGAAACGTCAGTGCACGTTCCCGCTGCTTTaGTGCCACAAGTTCCAACAT | + |
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Preference number: 5 (lower is better) Translates to: PGIYRTQRVYLLGRKRQCTFPLL*CHKFQH Trigger: ATGTTGGAACTTGTGGCACAAAAGCAGCGGGAACGT...GCACTGACGTTTCCTTCCTAATAAATAGACCCTTTGAGTTCTGTATATGCCTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238036.2 |
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| CDS TCA 72 bp | GCCAATCCATCGCAGCCTCGATGCCCTGGTTCCCTGTaGGGGCCAGAGCCTTCTCCGCGCGTCCCCTGGGAA | + |
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Preference number: 6 (lower is better) Translates to: ANPSQPRCPGSL*GPEPSPRVPWE Trigger: TTCCCAGGGGACGCGCGGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTGGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000166407.9 ENSMUST00000238036.2 |
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| CDS GCA 72 bp | CTCCCCACGGTGAAGCTCCACGTAGAGCCTCACAGCTaGCAGCTGTTCCCGGGCCCGGAAAGTCTGGGTCAG | + |
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Preference number: 6 (lower is better) Translates to: LPTVKLHVEPHS*QLFPGPESLGQ Trigger: CTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000096255.7 ENSMUST00000166407.9 ENSMUST00000238036.2 |
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| CDS CCA 72 bp | TGCTCCATCAGCCAATCCATCGCAGCCTCGATGCCCTaGTTCCCTGTGAGGGCCAGAGCCTTCTCCGCGCGT | + |
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Preference number: 6 (lower is better) Translates to: CSISQSIAASMP*FPVRARAFSAR Trigger: ACGCGCGGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTGGCTGATGGAGCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166407.9 ENSMUST00000238036.2 |
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| CDS TCA 72 bp | AGCAGCAGACCCAGAGCCTTCAGGGCCAACTTGCTCTaGGGGCGTGGGTTCTCGTCCCAGGACATGGCTGAG | + |
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Preference number: 6 (lower is better) Translates to: SSRPRAFRANLL*GRGFSSQDMAE Trigger: CTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAGGCTCTGGGTCTGCTGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000096255.7 ENSMUST00000166407.9 ENSMUST00000238036.2 |
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| CDS GCA 72 bp | TCTCCAGCAGCAGACCCAGAGCCTTCAGGGCCAACTTaGTCTGAGGGCGTGGGTTCTCGTCCCAGGACATGG | + |
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Preference number: 6 (lower is better) Translates to: SPAADPEPSGPT*SEGVGSRPRTW Trigger: CCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAGGCTCTGGGTCTGCTGCTGGAGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000096255.7 ENSMUST00000166407.9 ENSMUST00000238036.2 |
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| CDS GCA 72 bp | CTGCGCTCCTCCGCAGCCCGGCGCATCTCATCTTCCTaGAGTTTCTGTCGTGCAACTGACAGCTCTTGCCCT | + |
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Preference number: 6 (lower is better) Translates to: LRSSAARRISSS*SFCRATDSSCP Trigger: AGGGCAAGAGCTGTCAGTTGCACGACAGAAACTGCAGGAAGATGAGATGCGCCGGGCTGCGGAGGAGCGCAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000096255.7 ENSMUST00000166407.9 ENSMUST00000238036.2 |
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| CDS TCA 72 bp | TATCAGCCTCTGAGAAAGCCCGTCTGGGGAAGCCACTaGGCAACTGCACAGGGTCCTGGTCCTGTCCAGGCT | + |
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Preference number: 6 (lower is better) Translates to: YQPLRKPVWGSH*ATAQGPGPVQA Trigger: AGCCTGGACAGGACCAGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000096255.7 ENSMUST00000166407.9 ENSMUST00000238036.2 |
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| CDS GCA 72 bp | GTCTCCAGAGGCTCATCCACATCGGGGTCGTCTTCATaGTCCATCAGCCAATCCATCGCAGCCTCGATGCCC | + |
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Preference number: 6 (lower is better) Translates to: VSRGSSTSGSSS*SISQSIAASMP Trigger: GGGCATCGAGGCTGCGATGGATTGGCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166407.9 ENSMUST00000238036.2 |
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| CDS TCA 72 bp | TGCCAGCTGTTCCCGGGCCCGGAAAGTCTGGGTCAGTaGAGTCCCATCAGGCAGCCTAACCTGTATACGACA | + |
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Preference number: 6 (lower is better) Translates to: CQLFPGPESLGQ*SPIRQPNLYTT Trigger: TGTCGTATACAGGTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000096255.7 ENSMUST00000166407.9 ENSMUST00000238036.2 |
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| CDS TCA 72 bp | TCCCAGTTCCTGCAGAGGCCGTTCCATATCAGCCTCTaGGAAAGCCCGTCTGGGGAAGCCACTGAGCAACTG | + |
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Preference number: 6 (lower is better) Translates to: SQFLQRPFHISL*ESPSGEATEQL Trigger: CAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000096255.7 ENSMUST00000166407.9 ENSMUST00000238036.2 |
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| CDS CCA 72 bp | GAAGTCCCATCAGGCAGCCTAACCTGTATACGACACTaGTCATACTCCCGCTTAGTAGGGGGCTCCTGGCTG | + |
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Preference number: 6 (lower is better) Translates to: EVPSGSLTCIRH*SYSRLVGGSWL Trigger: CAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAGGTTAGGCTGCCTGATGGGACTTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000096255.7 ENSMUST00000166407.9 ENSMUST00000238036.2 |
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| CDS TCA 72 bp | AGAAGGAACAGGACCTGGGTCTGTTGCTGGTGGGGATaGCCGAGAACCCACACTACCACCATACTTCTTGGC | + |
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Preference number: 6 (lower is better) Translates to: RRNRTWVCCWWG*PRTHTTTILLG Trigger: GCCAAGAAGTATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000096255.7 ENSMUST00000166407.9 ENSMUST00000238036.2 |
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| CDS GCA 72 bp | ACAATGAGGACAGCAGAAGGCACGAGTCCCAGTTCCTaGAGAGGCCGTTCCATATCAGCCTCTGAGAAAGCC | + |
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Preference number: 6 (lower is better) Translates to: TMRTAEGTSPSS*RGRSISASEKA Trigger: GGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGGGACTCGTGCCTTCTGCTGTCCTCATTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000096255.7 ENSMUST00000166407.9 ENSMUST00000238036.2 |
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| CDS TCA 72 bp | GCGCATCTCATCTTCCTGCAGTTTCTGTCGTGCAACTaGCAGCTCTTGCCCTTGTCTCCTCCGCTGCTTTTC | + |
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Preference number: 6 (lower is better) Translates to: AHLIFLQFLSCN*QLLPLSPPLLF Trigger: GAAAAGCAGCGGAGGAGACAAGGGCAAGAGCTGTCAGTTGCACGACAGAAACTGCAGGAAGATGAGATGCGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000096255.7 ENSMUST00000166407.9 ENSMUST00000238036.2 |
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| CDS GCA 72 bp | CGTGCAACTGACAGCTCTTGCCCTTGTCTCCTCCGCTaGTTTTCTCGTTCTAAAGCTTCTCGCTCCTCTCTT | + |
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Preference number: 6 (lower is better) Translates to: RATDSSCPCLLR*FSRSKASRSSL Trigger: AAGAGAGGAGCGAGAAGCTTTAGAACGAGAAAAGCAGCGGAGGAGACAAGGGCAAGAGCTGTCAGTTGCACG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000096255.7 ENSMUST00000166407.9 ENSMUST00000238036.2 |
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| CDS GCA 72 bp | TCTTCCTGCAGTTTCTGTCGTGCAACTGACAGCTCTTaGCCTTGTCTCCTCCGCTGCTTTTCTCGTTCTAAA | + |
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Preference number: 6 (lower is better) Translates to: SSCSFCRATDSS*PCLLRCFSRSK Trigger: TTTAGAACGAGAAAAGCAGCGGAGGAGACAAGGGCAAGAGCTGTCAGTTGCACGACAGAAACTGCAGGAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000096255.7 ENSMUST00000166407.9 ENSMUST00000238036.2 |
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| CDS GCA 72 bp | TCGCTCCTCTCTTTCTTCACGTTCCCGCTGCTTTTGTaGCACAAGTTCCAACATTCTCTTGGTCTGTTCTTG | + |
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Preference number: 6 (lower is better) Translates to: SLLSFFTFPLLL*HKFQHSLGLFL Trigger: CAAGAACAGACCAAGAGAATGTTGGAACTTGTGGCACAAAAGCAGCGGGAACGTGAAGAAAGAGAGGAGCGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000096255.7 ENSMUST00000166407.9 ENSMUST00000238036.2 |
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| CDS GCA 72 bp | AAAGCTTCTCGCTCCTCTCTTTCTTCACGTTCCCGCTaGTTTTGTGCCACAAGTTCCAACATTCTCTTGGTC | + |
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Preference number: 6 (lower is better) Translates to: KASRSSLSSRSR*FCATSSNILLV Trigger: GACCAAGAGAATGTTGGAACTTGTGGCACAAAAGCAGCGGGAACGTGAAGAAAGAGAGGAGCGAGAAGCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000096255.7 ENSMUST00000166407.9 ENSMUST00000238036.2 |
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| CDS CAA 72 bp | TTCTCGCTCCTCTCTTTCTTCACGTTCCCGCTGCTTTaGTGCCACAAGTTCCAACATTCTCTTGGTCTGTTC | + |
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Preference number: 6 (lower is better) Translates to: FSLLSFFTFPLL*CHKFQHSLGLF Trigger: GAACAGACCAAGAGAATGTTGGAACTTGTGGCACAAAAGCAGCGGGAACGTGAAGAAAGAGAGGAGCGAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000096255.7 ENSMUST00000166407.9 ENSMUST00000238036.2 |
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