RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for UBTF (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020923

Ensembl transcript IDs: ENSMUST00000006754.14, ENSMUST00000079589.11, ENSMUST00000107115.8, ENSMUST00000107117.9, ENSMUST00000107119.9, ENSMUST00000107123.10, ENSMUST00000128016.2, ENSMUST00000146896.9, ENSMUST00000173870.8, ENSMUST00000174302.8, ENSMUST00000178839.8

Found 668 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGTGGCGGCAGGAAAGAGGGAGCAGACCTGAGAACTCAAAGGAAATaGGGATGGCCAGAGGACACGGGGCAAGGCAGGAAGAACTTCCTG +
Preference number: 1 (lower is better)
Translates to: GGGRKEGADLRTQRK*GWPEDTGQGRKNFL
Trigger: CAGGAAGTTCTTCCTGCCTTGCCCCGTGTCCTCTGGCCATCCCCATTTCCTTTGAGTTCTCAGGTCTGCTCCCTCTTTCCTGCCGCCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR GCA 90 bp AAGCCCAGGGCACCAGAGAAAAGCTTTAAGGCTCATGCCATGGTTTaGCCCTCCCACTTTCCTGCTGGACAGCACAGACCTGCAGCAGCT +
Preference number: 1 (lower is better)
Translates to: KPRAPEKSFKAHAMV*PSHFPAGQHRPAAA
Trigger: AGCTGCTGCAGGTCTGTGCTGTCCAGCAGGAAAGTGGGAGGGGCAAACCATGGCATGAGCCTTAAAGCTTTTCTCTGGTGCCCTGGGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR CCA 90 bp GGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTaGGGAGATGAGCTCTGCAGGGGCTCTCTCCTTGGCTGCCTGCCT +
Preference number: 1 (lower is better)
Translates to: GTEHRERQRLSKVVS*GDELCRGSLLGCLP
Trigger: AGGCAGGCAGCCAAGGAGAGAGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR TCA 90 bp TTAAGTCTCAATCCACCCCATCCCAGGCCCTCCCAGTCCCAGAAATaGCAACAGAGACGGCAGCCGAGATCGGTAGGAAACGTCTCGTTG +
Preference number: 1 (lower is better)
Translates to: LSLNPPHPRPSQSQK*QQRRQPRSVGNVSL
Trigger: CAACGAGACGTTTCCTACCGATCTCGGCTGCCGTCTCTGTTGTCATTTCTGGGACTGGGAGGGCCTGGGATGGGGTGGATTGAGACTTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR GCA 90 bp CACACACACACTCTTCTCTCTCTCTCCTATCCACAGGCGCAGTCATaGTGTATCGCTCGCTCACGTGTGTGCACATCACACACACAGCCT +
Preference number: 1 (lower is better)
Translates to: HTHTLLSLSYPQAQS*CIARSRVCTSHTQP
Trigger: AGGCTGTGTGTGTGATGTGCACACACGTGAGCGAGCGATACAGCATGACTGCGCCTGTGGATAGGAGAGAGAGAGAAGAGTGTGTGTGTG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR CCA 90 bp CTCCATCACACAGTCCAGGCAAATGTCTTTGCTTTCAAGAGGGACTaGCAGCTGGGCTGCAGCCTACTTTCTGTGGAGAGCCTACTTCCC +
Preference number: 1 (lower is better)
Translates to: LHHTVQANVFAFKRD*QLGCSLLSVESLLP
Trigger: GGGAAGTAGGCTCTCCACAGAAAGTAGGCTGCAGCCCAGCTGCCAGTCCCTCTTGAAAGCAAAGACATTTGCCTGGACTGTGTGATGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR CCA 90 bp GCAGTTAGAGGAGCAGTTGCAGAGAGCATCTTCTGCATACAGGGGTaGCGGCAGGAAAGAGGGAGCAGACCTGAGAACTCAAAGGAAATG +
Preference number: 1 (lower is better)
Translates to: AVRGAVAESIFCIQG*RQERGSRPENSKEM
Trigger: CATTTCCTTTGAGTTCTCAGGTCTGCTCCCTCTTTCCTGCCGCCACCCCTGTATGCAGAAGATGCTCTCTGCAACTGCTCCTCTAACTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR CCA 90 bp GCTGGGCTGCAGCCTACTTTCTGTGGAGAGCCTACTTCCCACCTCTaGCTTTCATTTAAGAAGCAAAACCCAATAGCACGAACAAAAATT +
Preference number: 1 (lower is better)
Translates to: AGLQPTFCGEPTSHL*LSFKKQNPIARTKI
Trigger: AATTTTTGTTCGTGCTATTGGGTTTTGCTTCTTAAATGAAAGCCAGAGGTGGGAAGTAGGCTCTCCACAGAAAGTAGGCTGCAGCCCAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR CCA 90 bp AGAGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCCAGAAGAGGGGCAGGGTaGGCCCGTCCAGCGCTGGCT +
Preference number: 2 (lower is better)
Translates to: RGTGPLPAFLKAAPLSPSRRGAG*ARPALA
Trigger: AGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCT...GGAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR CCA 90 bp ATCCCAGGCCCTCCCAGTCCCAGAAATGACAACAGAGACGGCAGCCGAGATCGGAGAAGAGGGGCAGGGTaGGCCCGTCCAGCGCTGGCT +
Preference number: 2 (lower is better)
Translates to: IPGPPSPRNDNRDGSRDRRRGAG*ARPALA
Trigger: AGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCT...CCGATCTCGGCTGCCGTCTCTGTTGTCATTTCTGGGACTGGGAGGGCCTGGGAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR CCA 90 bp ATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCGATGGTTGCTGTCCCTaGAGAACCCTGGAGCTGAGG +
Preference number: 2 (lower is better)
Translates to: MPELQMQKRGRVGPSSAGDGCCP*RTLELR
Trigger: CCTCAGCTCCAGGGTTCTCCAGGGACAGCAACCATC...GCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR CCA 90 bp TTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGGGCCCGTCCAGCGCTaGCTCAGTCTGATGGTTGCT +
Preference number: 2 (lower is better)
Translates to: LSMPELQMQKRGRVGPSSGPVQR*LSLMVA
Trigger: AGCAACCATCAGACTGAGCCAGCGCTGGACGGGCCC...GCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR CCA 90 bp AACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCTGGGCCCGTCCAGCGCTaGCTCAGTCTGATGGTTGCT +
Preference number: 2 (lower is better)
Translates to: NCKCRRGAGWARPALAQSGPVQR*LSLMVA
Trigger: AGCAACCATCAGACTGAGCCAGCGCTGGACGGGCCC...AGACTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR TCA 90 bp TCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCGGAGAACCCTGGAGCTaGGGCTCCAAGGCTGCAGAG +
Preference number: 2 (lower is better)
Translates to: SIVHAGTANAEEGQGGPVGEPWS*GSKAAE
Trigger: CTCTGCAGCCTTGGAGCCTCAGCTCCAGGGTTCTCC...GACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR GCA 90 bp AGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCTGATGGTTGCTGTTGCCGGAACTGCAAATaGAGAAGAGGGGCAGGGTGG +
Preference number: 2 (lower is better)
Translates to: RRGAGWARPALAQSDGCCCRNCK*RRGAGW
Trigger: CCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCA...ACAGCAACCATCAGACTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR CCA 90 bp CGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTGCAGAGTCCTAGCTTaGGCTCATGCAGCCTCCTAC +
Preference number: 2 (lower is better)
Translates to: RNCKCRRGAGWARPALAQCRVLA*AHAASY
Trigger: GTAGGAGGCTGCATGAGCCCAAGCTAGGACTCTGCA...CTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR CCA 90 bp TCCCAGGCCCTCCCAGTCCCAGAAATGACAACAGAGACGGCAGCCGAGATCGGTGGGCCCGTCCAGCGCTaGCTCAGTCTGATGGTTGCT +
Preference number: 2 (lower is better)
Translates to: SQALPVPEMTTETAAEIGGPVQR*LSLMVA
Trigger: AGCAACCATCAGACTGAGCCAGCGCTGGACGGGCCC...ACCGATCTCGGCTGCCGTCTCTGTTGTCATTTCTGGGACTGGGAGGGCCTGGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR TCA 90 bp CTCCCCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGAGAACCCTGGAGCTaGGGCTCCAAGGCTGCAGAG +
Preference number: 2 (lower is better)
Translates to: LPSPLSMPELQMQKRGRVGEPWS*GSKAAE
Trigger: CTCTGCAGCCTTGGAGCCTCAGCTCCAGGGTTCTCC...CACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGGGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR GCA 90 bp AGAGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCCTGGGGAGATGAGCTCTaGAGGGGCTCTCTCCTTGGC +
Preference number: 2 (lower is better)
Translates to: RGTGPLPAFLKAAPLSPSWGDEL*RGSLLG
Trigger: GCCAAGGAGAGAGCCCCTGCAGAGCTCATCTCCCCA...GGAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR CCA 90 bp CAGGGAAGAGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTGGGCCCGTCCAGCGCTaGCTCAGTCTGATGGTTGCT +
Preference number: 2 (lower is better)
Translates to: QGRGTGPLPAFLKAAPLSGPVQR*LSLMVA
Trigger: AGCAACCATCAGACTGAGCCAGCGCTGGACGGGCCC...AGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCTCTTCCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR CCA 90 bp GGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCAAAGAAGAGGGGCAGGGTaGGCCCGTCCAGCGCTGGCT +
Preference number: 2 (lower is better)
Translates to: GCRCGGLTKLFKTLSHPQRRGAG*ARPALA
Trigger: AGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCT...TTGGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR TCA 90 bp GCCCTCCCAGTCCCAGAAATGACAACAGAGACGGCAGCCGAGATCGGTAGGAAAGGAGAACCCTGGAGCTaGGGCTCCAAGGCTGCAGAG +
Preference number: 2 (lower is better)
Translates to: ALPVPEMTTETAAEIGRKGEPWS*GSKAAE
Trigger: CTCTGCAGCCTTGGAGCCTCAGCTCCAGGGTTCTCC...TTTCCTACCGATCTCGGCTGCCGTCTCTGTTGTCATTTCTGGGACTGGGAGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR TCA 90 bp AGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCCAGTGTCAGTTGGGGAGATaGGCTCTGCAGGGGCTCTCT +
Preference number: 2 (lower is better)
Translates to: RDRATACFLEGSTLVSLQCQLGR*ALQGLS
Trigger: AGAGAGCCCCTGCAGAGCTCATCTCCCCAACTGACA...CTGGAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR GCA 90 bp AAGAGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCCACCTTGCTGCAGGCTaGAGGTGTGGAGGTCTCACC +
Preference number: 2 (lower is better)
Translates to: KRDRATACFLEGSTLVSLHLAAG*RCGGLT
Trigger: GGTGAGACCTCCACACCTGCAGCCTGCAGCAAGGTG...GAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCTCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR GCA 90 bp CAGGGAAGAGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTTGGGGAGATGAGCTCTaGAGGGGCTCTCTCCTTGGC +
Preference number: 2 (lower is better)
Translates to: QGRGTGPLPAFLKAAPLSWGDEL*RGSLLG
Trigger: GCCAAGGAGAGAGCCCCTGCAGAGCTCATCTCCCCA...AGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCTCTTCCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR TCA 90 bp GCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACGGAGAACCCTGGAGCTaGGGCTCCAAGGCTGCAGAG +
Preference number: 2 (lower is better)
Translates to: AAGCRCGGLTKLFKTLSHGEPWS*GSKAAE
Trigger: CTCTGCAGCCTTGGAGCCTCAGCTCCAGGGTTCTCC...GTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR TCA 90 bp CTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCGGAGAACCCTGGAGCTaGGGCTCCAAGGCTGCAGAG +
Preference number: 2 (lower is better)
Translates to: LQAAGVEVSPNSLRLSPTGEPWS*GSKAAE
Trigger: CTCTGCAGCCTTGGAGCCTCAGCTCCAGGGTTCTCC...GGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR GCA 90 bp CAGGGAAGAGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTTGCCGGAACTGCAAATaGAGAAGAGGGGCAGGGTGG +
Preference number: 2 (lower is better)
Translates to: QGRGTGPLPAFLKAAPLSCRNCK*RRGAGW
Trigger: CCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCA...AGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCTCTTCCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR GCA 90 bp AAGAGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCTGCCGGAACTGCAAATaGAGAAGAGGGGCAGGGTGG +
Preference number: 2 (lower is better)
Translates to: KRDRATACFLEGSTLVSLCRNCK*RRGAGW
Trigger: CCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCA...GAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCTCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR GCA 90 bp TCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTCCAGTCCATTGTCCATaGCGGAACTGCAAATGCAGA +
Preference number: 2 (lower is better)
Translates to: SMPELQMQKRGRVGPSSAPVHCP*RNCKCR
Trigger: TCTGCATTTGCAGTTCCGGCATGGACAATGGACTGG...AGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR GCA 90 bp TTGCTTTCAAGAGGGACTGGCAGCTGGGCTGCAGCCTACTTTCTGTGGAGAGCCCACCTTGCTGCAGGCTaGAGGTGTGGAGGTCTCACC +
Preference number: 2 (lower is better)
Translates to: LLSRGTGSWAAAYFLWRAHLAAG*RCGGLT
Trigger: GGTGAGACCTCCACACCTGCAGCCTGCAGCAAGGTG...GGCTCTCCACAGAAAGTAGGCTGCAGCCCAGCTGCCAGTCCCTCTTGAAAGCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR CCA 90 bp TCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCTGCAGAGTCCTAGCTTaGGCTCATGCAGCCTCCTAC +
Preference number: 2 (lower is better)
Translates to: SIVHAGTANAEEGQGGPVCRVLA*AHAASY
Trigger: GTAGGAGGCTGCATGAGCCCAAGCTAGGACTCTGCA...GACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR CCA 90 bp CCTTGGTTTGTTCCTGCTAGGGACACCATCTCCCAGGCCTCTACCGACCCTTTTGGGCCCGTCCAGCGCTaGCTCAGTCTGATGGTTGCT +
Preference number: 2 (lower is better)
Translates to: PWFVPARDTISQASTDPFGPVQR*LSLMVA
Trigger: AGCAACCATCAGACTGAGCCAGCGCTGGACGGGCCC...AAAAGGGTCGGTAGAGGCCTGGGAGATGGTGTCCCTAGCAGGAACAAACCAAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR GCA 90 bp TCCCAGGCCCTCCCAGTCCCAGAAATGACAACAGAGACGGCAGCCGAGATCGGTTGTCCATGCCGGAACTaGAAATGCAGAAGAGGGGCA +
Preference number: 2 (lower is better)
Translates to: SQALPVPEMTTETAAEIGCPCRN*KCRRGA
Trigger: TGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACA...ACCGATCTCGGCTGCCGTCTCTGTTGTCATTTCTGGGACTGGGAGGGCCTGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR GCA 90 bp ACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCCAGTTCAGAACATCCACCTTGCTaGAGGCTGCAGGTGTGGAGG +
Preference number: 2 (lower is better)
Translates to: TGPLPAFLKAAPLSPSSSEHPPC*RLQVWR
Trigger: CCTCCACACCTGCAGCCTGCAGCAAGGTGGATGTTC...TGAACTGGAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR GCA 90 bp CAGTCCAGGCAAATGTCTTTGCTTTCAAGAGGGACTGGCAGCTGGGCTGCAGCCGACAGGGCCACTGCCTaGTTTCTTGAAGGCAGCACC +
Preference number: 2 (lower is better)
Translates to: QSRQMSLLSRGTGSWAAADRATA*FLEGST
Trigger: GGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTC...GGCTGCAGCCCAGCTGCCAGTCCCTCTTGAAAGCAAAGACATTTGCCTGGACTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR CCA 90 bp AAGAGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCTGCAGAGTCCTAGCTTaGGCTCATGCAGCCTCCTAC +
Preference number: 2 (lower is better)
Translates to: KRDRATACFLEGSTLVSLCRVLA*AHAASY
Trigger: GTAGGAGGCTGCATGAGCCCAAGCTAGGACTCTGCA...GAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR TCA 90 bp ACTGTTGTGTTGACCCCTCCACACGCCCAATATGGAGTCCCTTTTGTCTCTCTACTATCCCCACCCCGCTaGCCTTCCCACACCAGCTGC +
Preference number: 2 (lower is better)
Translates to: TVVLTPPHAQYGVPFVSLLSPPR*PSHTSC
Trigger: GCAGCTGGTGTGGGAAGGTCAGCGGGGTGGGGATAG...TAGAGAGACAAAAGGGACTCCATATTGGGCGTGTGGAGGGGTCAACACAACAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000128016.2
3UTR-3UTR GCA 90 bp CTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCTGCCGGAACTGCAAATaGAGAAGAGGGGCAGGGTGG +
Preference number: 2 (lower is better)
Translates to: LQAAGVEVSPNSLRLSPTCRNCK*RRGAGW
Trigger: CCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCA...GGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR GCA 90 bp ATCCCAGGCCCTCCCAGTCCCAGAAATGACAACAGAGACGGCAGCCGAGATCGGCCAGTCCATTGTCCATaGCGGAACTGCAAATGCAGA +
Preference number: 2 (lower is better)
Translates to: IPGPPSPRNDNRDGSRDRPVHCP*RNCKCR
Trigger: TCTGCATTTGCAGTTCCGGCATGGACAATGGACTGG...CCGATCTCGGCTGCCGTCTCTGTTGTCATTTCTGGGACTGGGAGGGCCTGGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR GCA 90 bp GCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCAAACTCCACCTTGCTGCAGGCTaGAGGTGTGGAGGTCTCACC +
Preference number: 2 (lower is better)
Translates to: AGVEVSPNSLRLSPTPKLHLAAG*RCGGLT
Trigger: GGTGAGACCTCCACACCTGCAGCCTGCAGCAAGGTG...GAGTTTGGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR GCA 90 bp GGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGTGGGGAGATGAGCTCTaGAGGGGCTCTCTCCTTGGC +
Preference number: 2 (lower is better)
Translates to: GKSGGYGTEHRERQRLSKWGDEL*RGSLLG
Trigger: GCCAAGGAGAGAGCCCCTGCAGAGCTCATCTCCCCA...CTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR CCA 90 bp AAGAGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCTGCAGGCTGCAGGTGTaGAGGTCTCACCAAACTCTT +
Preference number: 2 (lower is better)
Translates to: KRDRATACFLEGSTLVSLCRLQV*RSHQTL
Trigger: AAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCA...GAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCTCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR CCA 90 bp CCTTGGTTTGTTCCTGCTAGGGACACCATCTCCCAGGCCTCTACCGACCCTTTTCCCTCCAGTTCAATGTaGGGGGTCCAGGTAGCAAGC +
Preference number: 2 (lower is better)
Translates to: PWFVPARDTISQASTDPFPSSSM*GVQVAS
Trigger: GCTTGCTACCTGGACCCCCCACATTGAACTGGAGGG...AAAAGGGTCGGTAGAGGCCTGGGAGATGGTGTCCCTAGCAGGAACAAACCAAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR CAA 90 bp GGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTaGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCT +
Preference number: 2 (lower is better)
Translates to: GKSGGYGTEHRERQR*SKVVSWGDELCRGS
Trigger: AGAGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR TCA 90 bp CTTGCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCTGTCAGTTGGGGAGATaGGCTCTGCAGGGGCTCTCT +
Preference number: 2 (lower is better)
Translates to: LAAGCRCGGLTKLFKTLSCQLGR*ALQGLS
Trigger: AGAGAGCCCCTGCAGAGCTCATCTCCCCAACTGACA...GGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR TCA 90 bp TCTTTGCTTTCAAGAGGGACTGGCAGCTGGGCTGCAGCCTACTTTCTGTGGAGAGCAGGAAGAACTTCCTaGAGCCCAGGGCACCAGAGA +
Preference number: 2 (lower is better)
Translates to: SLLSRGTGSWAAAYFLWRAGRTS*SPGHQR
Trigger: TCTCTGGTGCCCTGGGCTTCAGGAAGTTCTTCCTGC...TCTCCACAGAAAGTAGGCTGCAGCCCAGCTGCCAGTCCCTCTTGAAAGCAAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR GCA 90 bp AGGGCACCAGAGAAAAGCTTTAAGGCTCATGCCATGGTTTGCCCCTCCCACTTTCCCGAACATCCACCTTaGTGCAGGCTGCAGGTGTGG +
Preference number: 2 (lower is better)
Translates to: RAPEKSFKAHAMVCPSHFPEHPP*CRLQVW
Trigger: CCACACCTGCAGCCTGCAGCAAGGTGGATGTTCGGG...AAAGTGGGAGGGGCAAACCATGGCATGAGCCTTAAAGCTTTTCTCTGGTGCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR GCA 90 bp AGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAATGGGGAGATGAGCTCTaGAGGGGCTCTCTCCTTGGC +
Preference number: 2 (lower is better)
Translates to: RKKVGKSGGYGTEHRERQWGDEL*RGSLLG
Trigger: GCCAAGGAGAGAGCCCCTGCAGAGCTCATCTCCCCA...TTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR CCA 90 bp GCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCAAACTCGATGGTTGCTGTCCCTaGAGAACCCTGGAGCTGAGG +
Preference number: 2 (lower is better)
Translates to: AGVEVSPNSLRLSPTPKLDGCCP*RTLELR
Trigger: CCTCAGCTCCAGGGTTCTCCAGGGACAGCAACCATC...GAGTTTGGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR TCA 90 bp CAGGCAAATGTCTTTGCTTTCAAGAGGGACTGGCAGCTGGGCTGCAGCCTACTTCACTGCCTGCTTTCTTaGAGGCAGCACCCTTGTCTC +
Preference number: 2 (lower is better)
Translates to: QANVFAFKRDWQLGCSLLHCLLS*RQHPCL
Trigger: GAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTG...AAGTAGGCTGCAGCCCAGCTGCCAGTCCCTCTTGAAAGCAAAGACATTTGCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR TCA 90 bp AGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAATGTCAGTTGGGGAGATaGGCTCTGCAGGGGCTCTCT +
Preference number: 2 (lower is better)
Translates to: RKKVGKSGGYGTEHRERQCQLGR*ALQGLS
Trigger: AGAGAGCCCCTGCAGAGCTCATCTCCCCAACTGACA...TTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR TCA 90 bp GAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAATGTCAGTTGGGGAGATaGGCTCTGCAGGGGCTCTCT +
Preference number: 2 (lower is better)
Translates to: ERKWGSLEGTGQNTGRDKCQLGR*ALQGLS
Trigger: AGAGAGCCCCTGCAGAGCTCATCTCCCCAACTGACA...TTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR GCA 90 bp CAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCCCAGTCCATTGTCCATaGCGGAACTGCAAATGCAGA +
Preference number: 2 (lower is better)
Translates to: QAAGVEVSPNSLRLSPTPPVHCP*RNCKCR
Trigger: TCTGCATTTGCAGTTCCGGCATGGACAATGGACTGG...GGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTG
54% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR GCA 90 bp AGGGCACCAGAGAAAAGCTTTAAGGCTCATGCCATGGTTTGCCCCTCCCACTTTGAACATCCACCTTGCTaGAGGCTGCAGGTGTGGAGG +
Preference number: 2 (lower is better)
Translates to: RAPEKSFKAHAMVCPSHFEHPPC*RLQVWR
Trigger: CCTCCACACCTGCAGCCTGCAGCAAGGTGGATGTTC...AAAGTGGGAGGGGCAAACCATGGCATGAGCCTTAAAGCTTTTCTCTGGTGCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR GCA 90 bp CCAACATGTCCCACCCCCACAGCCCTACCTCTAAGAATTTTCCAATACTTGCAGCCCGAACATCCACCTTaGTGCAGGCTGCAGGTGTGG +
Preference number: 2 (lower is better)
Translates to: PTCPTPTALPLRIFQYLQPEHPP*CRLQVW
Trigger: CCACACCTGCAGCCTGCAGCAAGGTGGATGTTCGGG...CTGCAAGTATTGGAAAATTCTTAGAGGTAGGGCTGTGGGGGTGGGACATGTTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR CCA 90 bp TCTGCATACAGGGGTGGCGGCAGGAAAGAGGGAGCAGACCTGAGAACTCAAAGGTTAAGGCTCATGCCATaGTTTGCCCCTCCCACTTTC +
Preference number: 2 (lower is better)
Translates to: SAYRGGGRKEGADLRTQRLRLMP*FAPPTF
Trigger: GAAAGTGGGAGGGGCAAACCATGGCATGAGCCTTAA...CCTTTGAGTTCTCAGGTCTGCTCCCTCTTTCCTGCCGCCACCCCTGTATGCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR GCA 90 bp TCCAGGGTGTTCAAACAAGGAGATGGAGTTCTCTGCAAGCCCTCTCAGGAACTTGACTGGCAGCTGGGCTaGAGCCTACTTTCTGTGGAG +
Preference number: 2 (lower is better)
Translates to: SRVFKQGDGVLCKPSQELDWQLG*SLLSVE
Trigger: CTCCACAGAAAGTAGGCTGCAGCCCAGCTGCCAGTC...AAGTTCCTGAGAGGGCTTGCAGAGAACTCCATCTCCTTGTTTGAACACCCTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR CCA 90 bp GGGCACCAGAGAAAAGCTTTAAGGCTCATGCCATGGTTTGCCCCTCCCACTTTCTGCAGGCTGCAGGTGTaGAGGTCTCACCAAACTCTT +
Preference number: 2 (lower is better)
Translates to: GHQRKALRLMPWFAPPTFCRLQV*RSHQTL
Trigger: AAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCA...GAAAGTGGGAGGGGCAAACCATGGCATGAGCCTTAAAGCTTTTCTCTGGTGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR CCA 90 bp CTTTGCTTTCAAGAGGGACTGGCAGCTGGGCTGCAGCCTACTTTCTGTGGAGAGTTAAGGCTCATGCCATaGTTTGCCCCTCCCACTTTC +
Preference number: 2 (lower is better)
Translates to: LCFQEGLAAGLQPTFCGELRLMP*FAPPTF
Trigger: GAAAGTGGGAGGGGCAAACCATGGCATGAGCCTTAA...CTCTCCACAGAAAGTAGGCTGCAGCCCAGCTGCCAGTCCCTCTTGAAAGCAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR CAA 90 bp ATCTTCTCTTTAGGAATCTCCATCACACAGTCCAGGCAAATGTCTTaGCTTTCAAGAGGGACTGGCAGCTGGGCTGCAGCCTACTTTCTG +
Preference number: 2 (lower is better)
Translates to: IFSLGISITQSRQMS*LSRGTGSWAAAYFL
Trigger: CAGAAAGTAGGCTGCAGCCCAGCTGCCAGTCCCTCTTGAAAGCAAAGACATTTGCCTGGACTGTGTGATGGAGATTCCTAAAGAGAAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR TCA 90 bp AATCTTCTCTTTAGGAATCTCCATCACACAGTCCAGGCAAATGTCTTTGCTTTCTGTCAGTTGGGGAGATaGGCTCTGCAGGGGCTCTCT +
Preference number: 2 (lower is better)
Translates to: NLLFRNLHHTVQANVFAFCQLGR*ALQGLS
Trigger: AGAGAGCCCCTGCAGAGCTCATCTCCCCAACTGACA...GAAAGCAAAGACATTTGCCTGGACTGTGTGATGGAGATTCCTAAAGAGAAGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR CAA 90 bp ATTTTCCAATACTTGCAGTGGGAGGAACACATGTCCTGTTCAAAGTaGTTTCTAAGTGAAAACGCATTTCACTCAAGTGTAACAGTCCAG +
Preference number: 2 (lower is better)
Translates to: IFQYLQWEEHMSCSK*FLSENAFHSSVTVQ
Trigger: CTGGACTGTTACACTTGAGTGAAATGCGTTTTCACTTAGAAACAACTTTGAACAGGACATGTGTTCCTCCCACTGCAAGTATTGGAAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR CCA 72 bp GAGCAGTCTGAACGCCTTCAGGGTCCTCCCCTGCAATaGGTCCTGTCTGACCATGTGTGGGCCAGGAGGGGG +
Preference number: 3 (lower is better)
Translates to: EQSERLQGPPLQ*VLSDHVWARRG
Trigger: CCCCCTCCTGGCCCACACATGGTCAGACAGGACCCATTGCAGGGGAGGACCCTGAAGGCGTTCAGACTGCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128016.2
3UTR-3UTR CAA 90 bp CGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGCTGCAGAGTCCTAGCTaGGGCTCATGCAGCCTCCTA +
Preference number: 3 (lower is better)
Translates to: RNCKCRRGAGWARPALAQLQSPS*GSCSLL
Trigger: TAGGAGGCTGCATGAGCCCAAGCTAGGACTCTGCAG...CTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR CAA 90 bp TGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCTGCAGAGTCCTAGCTaGGGCTCATGCAGCCTCCTA +
Preference number: 3 (lower is better)
Translates to: CRNCKCRRGAGWARPALALQSPS*GSCSLL
Trigger: TAGGAGGCTGCATGAGCCCAAGCTAGGACTCTGCAG...AGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR GCA 72 bp AACTCCCCAGTCCATTGTCCATGCCGGAACTGCAAATaGAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTG +
Preference number: 3 (lower is better)
Translates to: NSPVHCPCRNCK*RRGAGWARPAL
Trigger: CAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGGGGAGTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR GCA 72 bp TGTCCCTGGAGAACCCTGGAGCTGAGGCTCCAAGGCTaGAGAGTCCTAGCTTGGGCTCATGCAGCCTCCTAC +
Preference number: 3 (lower is better)
Translates to: CPWRTLELRLQG*RVLAWAHAASY
Trigger: GTAGGAGGCTGCATGAGCCCAAGCTAGGACTCTGCAGCCTTGGAGCCTCAGCTCCAGGGTTCTCCAGGGACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR TCA 72 bp AGTGTGGCTGTTTGGCTGTGGGGTACAGGAGCAGTCTaGACGCCTTCAGGGTCCTCCCCTGCAATGGGTCCT +
Preference number: 3 (lower is better)
Translates to: SVAVWLWGTGAV*TPSGSSPAMGP
Trigger: AGGACCCATTGCAGGGGAGGACCCTGAAGGCGTTCAGACTGCTCCTGTACCCCACAGCCAAACAGCCACACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128016.2
3UTR-3UTR CAA 90 bp AAGAGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCCTGCAGAGTCCTAGCTaGGGCTCATGCAGCCTCCTA +
Preference number: 3 (lower is better)
Translates to: KRDRATACFLEGSTLVSLLQSPS*GSCSLL
Trigger: TAGGAGGCTGCATGAGCCCAAGCTAGGACTCTGCAG...GAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCTCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR CAA 90 bp GGGAAGAGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCTTGAAGGCAGCACCCTaGTCTCCCTCCAGTTCAATG +
Preference number: 3 (lower is better)
Translates to: GKRDRATACFLEGSTLVSLKAAP*SPSSSM
Trigger: CATTGAACTGGAGGGAGACAAGGGTGCTGCCTTCAA...GGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCTCTTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR TCA 72 bp GGCAGGGAAGAGGGACAGGGCCACTGCCTGCTTTCTTaGAGGCAGCACCCTTGTCTCCCTCCAGTTCAATGT +
Preference number: 3 (lower is better)
Translates to: GREEGQGHCLLS*RQHPCLPPVQC
Trigger: ACATTGAACTGGAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCTCTTCCCTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR TCA 72 bp GGCCAGAGGACACGGGGCAAGGCAGGAAGAACTTCCTaGAGCCCAGGGCACCAGAGAAAAGCTTTAAGGCTC +
Preference number: 3 (lower is better)
Translates to: GQRTRGKAGRTS*SPGHQRKALRL
Trigger: GAGCCTTAAAGCTTTTCTCTGGTGCCCTGGGCTTCAGGAAGTTCTTCCTGCCTTGCCCCGTGTCCTCTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR CAA 90 bp CTGTATCGCTCGCTCACGTGTGTGCACATCACACACACAGCCTCACACACACACCTGCAGAGTCCTAGCTaGGGCTCATGCAGCCTCCTA +
Preference number: 3 (lower is better)
Translates to: LYRSLTCVHITHTASHTHLQSPS*GSCSLL
Trigger: TAGGAGGCTGCATGAGCCCAAGCTAGGACTCTGCAG...GTGTGTGTGTGAGGCTGTGTGTGTGATGTGCACACACGTGAGCGAGCGATACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR CAA 90 bp AGGCGCAGTCATGCTGTATCGCTCGCTCACGTGTGTGCACATCACACACACAGCCCACTGCCTGCTTTCTaGAAGGCAGCACCCTTGTCT +
Preference number: 3 (lower is better)
Translates to: RRSHAVSLAHVCAHHTHSPLPAF*KAAPLS
Trigger: AGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGG...GCTGTGTGTGTGATGTGCACACACGTGAGCGAGCGATACAGCATGACTGCGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR TCA 72 bp GGGCAAACTAGTATAGGAAGCATCAGGTGGTGTCCCTaGACCCCACAATGGAAGATGGCAGGGAGGGGCAGC +
Preference number: 3 (lower is better)
Translates to: GQTSIGSIRWCP*TPQWKMAGRGS
Trigger: GCTGCCCCTCCCTGCCATCTTCCATTGTGGGGTTCAGGGACACCACCTGATGCTTCCTATACTAGTTTGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR TCA 72 bp AGGGTCCCAGTGCTGAAATATATCCTGGGCAACCTCTaGCAGCACCAACATGTCCCACCCCCACAGCCCTAC +
Preference number: 3 (lower is better)
Translates to: RVPVLKYILGNL*QHQHVPPPQPY
Trigger: GTAGGGCTGTGGGGGTGGGACATGTTGGTGCTGTCAGAGGTTGCCCAGGATATATTTCAGCACTGGGACCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR CCA 72 bp TTGAAGGCAGCACCCTTGTCTCCCTCCAGTTCAATGTaGGGGGTCCAGGTAGCAAGCCCATCTGGGAAGGAA +
Preference number: 3 (lower is better)
Translates to: LKAAPLSPSSSM*GVQVASPSGKE
Trigger: TTCCTTCCCAGATGGGCTTGCTACCTGGACCCCCCACATTGAACTGGAGGGAGACAAGGGTGCTGCCTTCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR CCA 72 bp ACAGCACAGACCTGCAGCAGCTCAGGGACATGGCCTTaGCAGGGGCAAACTAGTATAGGAAGCATCAGGTGG +
Preference number: 3 (lower is better)
Translates to: TAQTCSSSGTWP*QGQTSIGSIRW
Trigger: CCACCTGATGCTTCCTATACTAGTTTGCCCCTGCCAAGGCCATGTCCCTGAGCTGCTGCAGGTCTGTGCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR CCA 72 bp AGGAAAGAGGGAGCAGACCTGAGAACTCAAAGGAAATaGGGATGGCCAGAGGACACGGGGCAAGGCAGGAAG +
Preference number: 3 (lower is better)
Translates to: RKEGADLRTQRK*GWPEDTGQGRK
Trigger: CTTCCTGCCTTGCCCCGTGTCCTCTGGCCATCCCCATTTCCTTTGAGTTCTCAGGTCTGCTCCCTCTTTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR CCA 72 bp GGAGCAGTTGCAGAGAGCATCTTCTGCATACAGGGGTaGCGGCAGGAAAGAGGGAGCAGACCTGAGAACTCA +
Preference number: 3 (lower is better)
Translates to: GAVAESIFCIQG*RQERGSRPENS
Trigger: TGAGTTCTCAGGTCTGCTCCCTCTTTCCTGCCGCCACCCCTGTATGCAGAAGATGCTCTCTGCAACTGCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR CAA 90 bp ACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCCAGTTCAAAACTCCCCAGTCCATaGTCCATGCCGGAACTGCAA +
Preference number: 3 (lower is better)
Translates to: TGPLPAFLKAAPLSPSSSKLPSP*SMPELQ
Trigger: TTGCAGTTCCGGCATGGACAATGGACTGGGGAGTTT...TGAACTGGAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR CAA 90 bp TCTGCATACAGGGGTGGCGGCAGGAAAGAGGGAGCAGACCTGAGAACTCAAAGGAAACTCCCCAGTCCATaGTCCATGCCGGAACTGCAA +
Preference number: 3 (lower is better)
Translates to: SAYRGGGRKEGADLRTQRKLPSP*SMPELQ
Trigger: TTGCAGTTCCGGCATGGACAATGGACTGGGGAGTTT...CCTTTGAGTTCTCAGGTCTGCTCCCTCTTTCCTGCCGCCACCCCTGTATGCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR GCA 72 bp CAAGCAGTTAGAGGAGCAGTTGCAGAGAGCATCTTCTaGATACAGGGGTGGCGGCAGGAAAGAGGGAGCAGA +
Preference number: 3 (lower is better)
Translates to: QAVRGAVAESIF*IQGWRQERGSR
Trigger: TCTGCTCCCTCTTTCCTGCCGCCACCCCTGTATGCAGAAGATGCTCTCTGCAACTGCTCCTCTAACTGCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR CCA 72 bp CACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTaGGGAGATGAGCTCTGCAGGGGCTCTCTCCTTGGC +
Preference number: 3 (lower is better)
Translates to: HRERQRLSKVVS*GDELCRGSLLG
Trigger: GCCAAGGAGAGAGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR CCA 72 bp CCAGGGCACCAGAGAAAAGCTTTAAGGCTCATGCCATaGTTTGCCCCTCCCACTTTCCTGCTGGACAGCACA +
Preference number: 3 (lower is better)
Translates to: PGHQRKALRLMP*FAPPTFLLDST
Trigger: TGTGCTGTCCAGCAGGAAAGTGGGAGGGGCAAACCATGGCATGAGCCTTAAAGCTTTTCTCTGGTGCCCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR GCA 72 bp ACTCTTCTCTCTCTCTCCTATCCACAGGCGCAGTCATaGTGTATCGCTCGCTCACGTGTGTGCACATCACAC +
Preference number: 3 (lower is better)
Translates to: TLLSLSYPQAQS*CIARSRVCTSH
Trigger: GTGTGATGTGCACACACGTGAGCGAGCGATACAGCATGACTGCGCCTGTGGATAGGAGAGAGAGAGAAGAGT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR GCA 72 bp GCACCAGAGAAAAGCTTTAAGGCTCATGCCATGGTTTaGCCCTCCCACTTTCCTGCTGGACAGCACAGACCT +
Preference number: 3 (lower is better)
Translates to: APEKSFKAHAMV*PSHFPAGQHRP
Trigger: AGGTCTGTGCTGTCCAGCAGGAAAGTGGGAGGGGCAAACCATGGCATGAGCCTTAAAGCTTTTCTCTGGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR CCA 72 bp ACAGTCCAGGCAAATGTCTTTGCTTTCAAGAGGGACTaGCAGCTGGGCTGCAGCCTACTTTCTGTGGAGAGC +
Preference number: 3 (lower is better)
Translates to: TVQANVFAFKRD*QLGCSLLSVES
Trigger: GCTCTCCACAGAAAGTAGGCTGCAGCCCAGCTGCCAGTCCCTCTTGAAAGCAAAGACATTTGCCTGGACTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR CAA 90 bp TCCAGGGTGTTCAAACAAGGAGATGGAGTTCTCTGCAAGCCCTCTCAGGAACTTCTGCAGAGTCCTAGCTaGGGCTCATGCAGCCTCCTA +
Preference number: 3 (lower is better)
Translates to: SRVFKQGDGVLCKPSQELLQSPS*GSCSLL
Trigger: TAGGAGGCTGCATGAGCCCAAGCTAGGACTCTGCAG...AAGTTCCTGAGAGGGCTTGCAGAGAACTCCATCTCCTTGTTTGAACACCCTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR CAA 90 bp TCTTTGCTTTCAAGAGGGACTGGCAGCTGGGCTGCAGCCTACTTTCTGTGGAGAAAACTCCCCAGTCCATaGTCCATGCCGGAACTGCAA +
Preference number: 3 (lower is better)
Translates to: SLLSRGTGSWAAAYFLWRKLPSP*SMPELQ
Trigger: TTGCAGTTCCGGCATGGACAATGGACTGGGGAGTTT...TCTCCACAGAAAGTAGGCTGCAGCCCAGCTGCCAGTCCCTCTTGAAAGCAAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR CAA 90 bp CCCCAAACTCCCCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGAAAGGTTGTCAAAGGTaGTCAGTTGGGGAGATGAGC +
Preference number: 3 (lower is better)
Translates to: PQTPQSIVHAGTANAEEGKGCQR*SVGEMS
Trigger: GCTCATCTCCCCAACTGACAACCTTTGACAACCTTT...CCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGGGGAGTTTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 6 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR CCA 72 bp AGGCAAATGTCTTTGCTTTCAAGAGGGACTGGCAGCTaGGCTGCAGCCTACTTTCTGTGGAGAGCCTACTTC +
Preference number: 3 (lower is better)
Translates to: RQMSLLSRGTGS*AAAYFLWRAYF
Trigger: GAAGTAGGCTCTCCACAGAAAGTAGGCTGCAGCCCAGCTGCCAGTCCCTCTTGAAAGCAAAGACATTTGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR CAA 90 bp CCAAACTCCCCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAAAAGGTTGTCAAAGGTaGTCAGTTGGGGAGATGAGC +
Preference number: 3 (lower is better)
Translates to: PNSPVHCPCRNCKCRRGAKGCQR*SVGEMS
Trigger: GCTCATCTCCCCAACTGACAACCTTTGACAACCTTT...TGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGGGGAGTTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 6 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR GCA 72 bp CAGTCCAGGGTGTTCAAACAAGGAGATGGAGTTCTCTaGAAGCCCTCTCAGGAACTTAAAACCCTGGTACTA +
Preference number: 3 (lower is better)
Translates to: QSRVFKQGDGVL*KPSQELKTLVL
Trigger: TAGTACCAGGGTTTTAAGTTCCTGAGAGGGCTTGCAGAGAACTCCATCTCCTTGTTTGAACACCCTGGACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR-3UTR CAA 90 bp AATCTTCTCTTTAGGAATCTCCATCACACAGTCCAGGCAAATGTCTTTGCTTTCTTGAAGGCAGCACCCTaGTCTCCCTCCAGTTCAATG +
Preference number: 3 (lower is better)
Translates to: NLLFRNLHHTVQANVFAFLKAAP*SPSSSM
Trigger: CATTGAACTGGAGGGAGACAAGGGTGCTGCCTTCAA...GAAAGCAAAGACATTTGCCTGGACTGTGTGATGGAGATTCCTAAAGAGAAGATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCTGATGGTTGCTGTCCTGCCTGCCTGGGGTaGAGGCTGAGCCTCAGTTGG +
Preference number: 4 (lower is better)
Translates to: RRGAGWARPALAQSDGCCPACLG*RLSLSW
Trigger: CCAACTGAGGCTCAGCCTCCACCCCAGGCAGGCAGG...ACAGCAACCATCAGACTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006754.14
CDS-3UTR TCA 90 bp ATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCCATCGAACTTGTCCTTaGGCTGGCGCTCGGCCTTGG +
Preference number: 4 (lower is better)
Translates to: MPELQMQKRGRVGPSSAGHRTCP*AGARPW
Trigger: CCAAGGCCGAGCGCCAGCTCAAGGACAAGTTCGATG...GCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp ATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCCTTGCCACCTTCCTGTaGAGGCTTCTTGGAGGCCGG +
Preference number: 4 (lower is better)
Translates to: MPELQMQKRGRVGPSSAGLATFL*RLLGGR
Trigger: CCGGCCTCCAAGAAGCCTTCACAGGAAGGTGGCAAG...GCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCTGATGGTTGCTGTTGGGACCAGCGGTCTTaGCCTTTGGGGGCGGCCATT +
Preference number: 4 (lower is better)
Translates to: RRGAGWARPALAQSDGCCWDQRS*PLGAAI
Trigger: AATGGCCGCCCCCAAAGGCCAAGACCGCTGGTCCCA...ACAGCAACCATCAGACTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp GAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCCAGACACAGGCCGCTTaGGCTTCTCGGAGCCACCCT +
Preference number: 4 (lower is better)
Translates to: ELQMQKRGRVGPSSAGSVQTQAA*ASRSHP
Trigger: AGGGTGGCTCCGAGAAGCCCAAGCGGCCTGTGTCTG...GACTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp GAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCCAGGGTGATCCTCCCTaGATCGGGCCAGGTTTCGCT +
Preference number: 4 (lower is better)
Translates to: ELQMQKRGRVGPSSAGSVQGDPP*IGPGFA
Trigger: AGCGAAACCTGGCCCGATTCAGGGAGGATCACCCTG...GACTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp GAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCCATCGAACTTGTCCTTaGGCTGGCGCTCGGCCTTGG +
Preference number: 4 (lower is better)
Translates to: ELQMQKRGRVGPSSAGSVHRTCP*AGARPW
Trigger: CCAAGGCCGAGCGCCAGCTCAAGGACAAGTTCGATG...GACTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp TGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCCTTCATGTTGGCCATaGGCTCCGCACAGTACAGGG +
Preference number: 4 (lower is better)
Translates to: CRNCKCRRGAGWARPALAPSCWP*APHSTG
Trigger: CCCTGTACTGTGCGGAGCTCATGGCCAACATGAAGG...AGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp ATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCGGCTGCATAGCACCATaGGCTCTGTGCTGGGCACAT +
Preference number: 4 (lower is better)
Translates to: MPELQMQKRGRVGPSSAGGCIAP*ALCWAH
Trigger: ATGTGCCCAGCACAGAGCGCATGGTGCTATGCAGCC...GCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCTCCCAGAACCCGCTGCTaGTCTTCCTCCGGCAAGCTC +
Preference number: 4 (lower is better)
Translates to: NCKCRRGAGWARPALAQSPRTRC*SSSGKL
Trigger: GAGCTTGCCGGAGGAAGAGCAGCAGCGGGTTCTGGG...AGACTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCCGTTCCTCCTGTAGCTaGCTTCGCTTCTCCTCAGAG +
Preference number: 4 (lower is better)
Translates to: AGTANAEEGQGGPVQRWLRSSCS*LRFSSE
Trigger: CTCTGAGGAGAAGCGAAGGCAGCTACAGGAGGAACG...GAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCTGGCTTCCTCTCAGACTaGGCCTTCAGCGCAGCCTCC +
Preference number: 4 (lower is better)
Translates to: NCKCRRGAGWARPALAQSGFLSD*AFSAAS
Trigger: GGAGGCTGCGCTGAAGGCGCAGTCTGAGAGGAAGCC...AGACTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp TGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCCGATGACACTCTGCTaGCAGATCTCCTCAGCCCTC +
Preference number: 4 (lower is better)
Translates to: CRNCKCRRGAGWARPALAPMTLC*QISSAL
Trigger: GAGGGCTGAGGAGATCTGGCAGCAGAGTGTCATCGG...AGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp GCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCCCATTTCCAGGTCTGTaGGACAGTCCGCTTCTCCGT +
Preference number: 4 (lower is better)
Translates to: AGTANAEEGQGGPVQRWLPFPGL*DSPLLR
Trigger: ACGGAGAAGCGGACTGTCCCACAGACCTGGAAATGG...GAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp ATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTTGCTCATCTCCGGGTaGAGCTTCGCGTACTTGGCC +
Preference number: 4 (lower is better)
Translates to: MPELQMQKRGRVGPSSAGLLISG*SFAYLA
Trigger: GGCCAAGTACGCGAAGCTCCACCCGGAGATGAGCAA...GCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp GCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGCAGCTTCCATTGCTaGCTGCATAGCACCATGCGC +
Preference number: 4 (lower is better)
Translates to: AGTANAEEGQGGPVQRWLSSFHC*LHSTMR
Trigger: GCGCATGGTGCTATGCAGCCAGCAATGGAAGCTGCT...GAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp GAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCTATGCTGCGCGGTCCTaGGGAGACAGGCTCTTGACC +
Preference number: 4 (lower is better)
Translates to: ELQMQKRGRVGPSSAGSVYAARS*GDRLLT
Trigger: GGTCAAGAGCCTGTCTCCCCAGGACCGCGCAGCATA...GACTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp GCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCGCTAGACTTGGGGTTTaGGCCTCGGAGCTTGGTCAT +
Preference number: 4 (lower is better)
Translates to: AGTANAEEGQGGPVQRWLARLGV*ASELGH
Trigger: ATGACCAAGCTCCGAGGCCCAAACCCCAAGTCTAGC...GAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp ATCCCAGGCCCTCCCAGTCCCAGAAATGACAACAGAGACGGCAGCCGAGATCGGGGCTTCCTCTCAGACTaGGCCTTCAGCGCAGCCTCC +
Preference number: 4 (lower is better)
Translates to: IPGPPSPRNDNRDGSRDRGFLSD*AFSAAS
Trigger: GGAGGCTGCGCTGAAGGCGCAGTCTGAGAGGAAGCC...CCGATCTCGGCTGCCGTCTCTGTTGTCATTTCTGGGACTGGGAGGGCCTGGGAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp CGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCTCCGATGACACTCTaGTGCCAGATCTCCTCAGCC +
Preference number: 4 (lower is better)
Translates to: RNCKCRRGAGWARPALAQSPMTL*CQISSA
Trigger: GGCTGAGGAGATCTGGCAGCAGAGTGTCATCGGAGA...CTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp ATCCCAGGCCCTCCCAGTCCCAGAAATGACAACAGAGACGGCAGCCGAGATCGGTGGGACCAGCGGTCTTaGCCTTTGGGGGCGGCCATT +
Preference number: 4 (lower is better)
Translates to: IPGPPSPRNDNRDGSRDRWDQRS*PLGAAI
Trigger: AATGGCCGCCCCCAAAGGCCAAGACCGCTGGTCCCA...CCGATCTCGGCTGCCGTCTCTGTTGTCATTTCTGGGACTGGGAGGGCCTGGGAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp ATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCGTCAGCATATCTTCCTaGGACCAGCGGTCTTGGCCT +
Preference number: 4 (lower is better)
Translates to: MPELQMQKRGRVGPSSAGVSISS*DQRSWP
Trigger: AGGCCAAGACCGCTGGTCCCAGGAAGATATGCTGAC...GCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp CGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGAGAGTTTGTAGCAGCTaGAGGGGCCCGCATCTCACT +
Preference number: 4 (lower is better)
Translates to: RNCKCRRGAGWARPALAQRVCSS*RGPHLT
Trigger: AGTGAGATGCGGGCCCCTCCAGCTGCTACAAACTCT...CTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp ATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCAGAGTTTGTAGCAGCTaGAGGGGCCCGCATCTCACT +
Preference number: 4 (lower is better)
Translates to: MPELQMQKRGRVGPSSAGRVCSS*RGPHLT
Trigger: AGTGAGATGCGGGCCCCTCCAGCTGCTACAAACTCT...GCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp ATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCGCTAGACTTGGGGTTTaGGCCTCGGAGCTTGGTCAT +
Preference number: 4 (lower is better)
Translates to: MPELQMQKRGRVGPSSAGARLGV*ASELGH
Trigger: ATGACCAAGCTCCGAGGCCCAAACCCCAAGTCTAGC...GCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp CCCCCGAACATCCACCTTGCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCCAGGGTGATCCTCCCTaGATCGGGCCAGGTTTCGCT +
Preference number: 4 (lower is better)
Translates to: PPNIHLAAGCRCGGLTKLQGDPP*IGPGFA
Trigger: AGCGAAACCTGGCCCGATTCAGGGAGGATCACCCTG...GAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGCAAGGTGGATGTTCGGGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp GGGAAGAGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCATCGAACTTGTCCTTaGGCTGGCGCTCGGCCTTGG +
Preference number: 4 (lower is better)
Translates to: GKRDRATACFLEGSTLVSHRTCP*AGARPW
Trigger: CCAAGGCCGAGCGCCAGCTCAAGGACAAGTTCGATG...GGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCTCTTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp TCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCATCGAACTTGTCCTTaGGCTGGCGCTCGGCCTTGG +
Preference number: 4 (lower is better)
Translates to: SIVHAGTANAEEGQGGPVHRTCP*AGARPW
Trigger: CCAAGGCCGAGCGCCAGCTCAAGGACAAGTTCGATG...GACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCGCTTCCATTGCTGGCTaGATAGCACCATGCGCTCTG +
Preference number: 4 (lower is better)
Translates to: ELQMQKRGRVGPSSAGSVASIAG*IAPCAL
Trigger: CAGAGCGCATGGTGCTATGCAGCCAGCAATGGAAGC...GACTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp CCCCCGAACATCCACCTTGCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTGGGGAGATGAGCTCTaGAGGGGCTCTCTCCTTGGC +
Preference number: 4 (lower is better)
Translates to: PPNIHLAAGCRCGGLTKLWGDEL*RGSLLG
Trigger: GCCAAGGAGAGAGCCCCTGCAGAGCTCATCTCCCCA...GAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGCAAGGTGGATGTTCGGGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000006754.14
CDS-3UTR CCA 90 bp AAGATGGCAGGGAGGGGCAGCCTTGGTTTGTTCCTGCTAGGGACACCATCTCCCTGGGACCAGCGGTCTTaGCCTTTGGGGGCGGCCATT +
Preference number: 4 (lower is better)
Translates to: KMAGRGSLGLFLLGTPSPWDQRS*PLGAAI
Trigger: AATGGCCGCCCCCAAAGGCCAAGACCGCTGGTCCCA...GGGAGATGGTGTCCCTAGCAGGAACAAACCAAGGCTGCCCCTCCCTGCCATCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp CCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCTTGCTCATCTCCGGGTaGAGCTTCGCGTACTTGGCC +
Preference number: 4 (lower is better)
Translates to: PLSMPELQMQKRGRVGPSLLISG*SFAYLA
Trigger: GGCCAAGTACGCGAAGCTCCACCCGGAGATGAGCAA...GGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp ATCCCAGGCCCTCCCAGTCCCAGAAATGACAACAGAGACGGCAGCCGAGATCGGTATGCTGCGCGGTCCTaGGGAGACAGGCTCTTGACC +
Preference number: 4 (lower is better)
Translates to: IPGPPSPRNDNRDGSRDRYAARS*GDRLLT
Trigger: GGTCAAGAGCCTGTCTCCCCAGGACCGCGCAGCATA...CCGATCTCGGCTGCCGTCTCTGTTGTCATTTCTGGGACTGGGAGGGCCTGGGAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp AGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCTGATGGTTGCTGTGCGACTCTGTGGTTTTaGACTTGGAGCTGTCGTTGG +
Preference number: 4 (lower is better)
Translates to: RRGAGWARPALAQSDGCCATLWF*TWSCRW
Trigger: CCAACGACAGCTCCAAGTTCAAAACCACAGAGTCGC...ACAGCAACCATCAGACTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp AAGAGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCCATCGAACTTGTCCTTaGGCTGGCGCTCGGCCTTGG +
Preference number: 4 (lower is better)
Translates to: KRDRATACFLEGSTLVSLHRTCP*AGARPW
Trigger: CCAAGGCCGAGCGCCAGCTCAAGGACAAGTTCGATG...GAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCTCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp CCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCGGCTGCATAGCACCATaGGCTCTGTGCTGGGCACAT +
Preference number: 4 (lower is better)
Translates to: PVHCPCRNCKCRRGAGWAGCIAP*ALCWAH
Trigger: ATGTGCCCAGCACAGAGCGCATGGTGCTATGCAGCC...GGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp CCCCAAACTCCCCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCCCAGAACCCGCTGCTaGTCTTCCTCCGGCAAGCTC +
Preference number: 4 (lower is better)
Translates to: PQTPQSIVHAGTANAEEGPRTRC*SSSGKL
Trigger: GAGCTTGCCGGAGGAAGAGCAGCAGCGGGTTCTGGG...CCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGGGGAGTTTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp CAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCCCCAGAACCCGCTGCTaGTCTTCCTCCGGCAAGCTC +
Preference number: 4 (lower is better)
Translates to: QAAGVEVSPNSLRLSPTPPRTRC*SSSGKL
Trigger: GAGCTTGCCGGAGGAAGAGCAGCAGCGGGTTCTGGG...GGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTG
60% GC, longest homopolymer 8 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp TCCCAGGCCCTCCCAGTCCCAGAAATGACAACAGAGACGGCAGCCGAGATCGGTTCTCGGAGCCACCCTTaGCACCTTCCTGTGAAGGCT +
Preference number: 4 (lower is better)
Translates to: SQALPVPEMTTETAAEIGSRSHP*HLPVKA
Trigger: AGCCTTCACAGGAAGGTGGCAAGGGTGGCTCCGAGA...ACCGATCTCGGCTGCCGTCTCTGTTGTCATTTCTGGGACTGGGAGGGCCTGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp TCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCTCTCGGAGCCACCCTTaGCACCTTCCTGTGAAGGCT +
Preference number: 4 (lower is better)
Translates to: SIVHAGTANAEEGQGGPVSRSHP*HLPVKA
Trigger: AGCCTTCACAGGAAGGTGGCAAGGGTGGCTCCGAGA...GACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp CCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCTCTCGGAGCCACCCTTaGCACCTTCCTGTGAAGGCT +
Preference number: 4 (lower is better)
Translates to: PVHCPCRNCKCRRGAGWASRSHP*HLPVKA
Trigger: AGCCTTCACAGGAAGGTGGCAAGGGTGGCTCCGAGA...GGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GGCAGCCTTGGTTTGTTCCTGCTAGGGACACCATCTCCCAGGCCTCTACCGACCTCTCGGAGCCACCCTTaGCACCTTCCTGTGAAGGCT +
Preference number: 4 (lower is better)
Translates to: GSLGLFLLGTPSPRPLPTSRSHP*HLPVKA
Trigger: AGCCTTCACAGGAAGGTGGCAAGGGTGGCTCCGAGA...GGTCGGTAGAGGCCTGGGAGATGGTGTCCCTAGCAGGAACAAACCAAGGCTGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp TCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCACAAGTCGTTCCACATaGGGGCCAGAAGGCGGGTCA +
Preference number: 4 (lower is better)
Translates to: SIVHAGTANAEEGQGGPVTSRST*GPEGGS
Trigger: TGACCCGCCTTCTGGCCCGCATGTGGAACGACTTGT...GACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp TCCCAGGCCCTCCCAGTCCCAGAAATGACAACAGAGACGGCAGCCGAGATCGGTTGCCAATCTCCACCATaGGCTCCTTCAGCGGCAGGT +
Preference number: 4 (lower is better)
Translates to: SQALPVPEMTTETAAEIGCQSPP*APSAAG
Trigger: ACCTGCCGCTGAAGGAGCGCATGGTGGAGATTGGCA...ACCGATCTCGGCTGCCGTCTCTGTTGTCATTTCTGGGACTGGGAGGGCCTGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCACCCAGAGGTCCAAGTaGACCTTGTACTGCCTCTGT +
Preference number: 4 (lower is better)
Translates to: ELQMQKRGRVGPSSAGSVTQRSK*TLYCLC
Trigger: ACAGAGGCAGTACAAGGTGCACTTGGACCTCTGGGT...GACTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCTGATGGTTGCTGTACCCAGAGGTCCAAGTaGACCTTGTACTGCCTCTGT +
Preference number: 4 (lower is better)
Translates to: RRGAGWARPALAQSDGCCTQRSK*TLYCLC
Trigger: ACAGAGGCAGTACAAGGTGCACTTGGACCTCTGGGT...ACAGCAACCATCAGACTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp TCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTACCCAGAGGTCCAAGTaGACCTTGTACTGCCTCTGT +
Preference number: 4 (lower is better)
Translates to: SMPELQMQKRGRVGPSSATQRSK*TLYCLC
Trigger: ACAGAGGCAGTACAAGGTGCACTTGGACCTCTGGGT...AGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp CGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGGGAGCTGTCGTTGGATaGGAGGTTGTTCTTCATGCA +
Preference number: 4 (lower is better)
Translates to: RNCKCRRGAGWARPALAQGAVVG*EVVLHA
Trigger: TGCATGAAGAACAACCTCCCATCCAACGACAGCTCC...CTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp CCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCGCGACTCTGTGGTTTTaGACTTGGAGCTGTCGTTGG +
Preference number: 4 (lower is better)
Translates to: PLSMPELQMQKRGRVGPSATLWF*TWSCRW
Trigger: CCAACGACAGCTCCAAGTTCAAAACCACAGAGTCGC...GGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp CCCCAAACTCCCCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCATCGAACTTGTCCTTaGGCTGGCGCTCGGCCTTGG +
Preference number: 4 (lower is better)
Translates to: PQTPQSIVHAGTANAEEGHRTCP*AGARPW
Trigger: CCAAGGCCGAGCGCCAGCTCAAGGACAAGTTCGATG...CCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGGGGAGTTTGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp CTCCCCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGCCTTCATGTTGGCCATaGGCTCCGCACAGTACAGGG +
Preference number: 4 (lower is better)
Translates to: LPSPLSMPELQMQKRGRVPSCWP*APHSTG
Trigger: CCCTGTACTGTGCGGAGCTCATGGCCAACATGAAGG...CACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGGGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp TCCCAGGCCCTCCCAGTCCCAGAAATGACAACAGAGACGGCAGCCGAGATCGGTGCACCATGCGCTCTGTaGTGGGCACATCCTTCATGT +
Preference number: 4 (lower is better)
Translates to: SQALPVPEMTTETAAEIGAPCAL*WAHPSC
Trigger: ACATGAAGGATGTGCCCAGCACAGAGCGCATGGTGC...ACCGATCTCGGCTGCCGTCTCTGTTGTCATTTCTGGGACTGGGAGGGCCTGGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GGGAAGAGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCGCTTCCATTGCTGGCTaGATAGCACCATGCGCTCTG +
Preference number: 4 (lower is better)
Translates to: GKRDRATACFLEGSTLVSASIAG*IAPCAL
Trigger: CAGAGCGCATGGTGCTATGCAGCCAGCAATGGAAGC...GGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCTCTTCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp TCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCGCTTCCATTGCTGGCTaGATAGCACCATGCGCTCTG +
Preference number: 4 (lower is better)
Translates to: SIVHAGTANAEEGQGGPVASIAG*IAPCAL
Trigger: CAGAGCGCATGGTGCTATGCAGCCAGCAATGGAAGC...GACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCTGAGAGCAGCTTCCATTaGTGGCTGCATAGCACCATG +
Preference number: 4 (lower is better)
Translates to: NCKCRRGAGWARPALAQSESSFH*WLHSTM
Trigger: CATGGTGCTATGCAGCCAGCAATGGAAGCTGCTCTC...AGACTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp CTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCAGAACCCGCTGCTaGTCTTCCTCCGGCAAGCTC +
Preference number: 4 (lower is better)
Translates to: LQAAGVEVSPNSLRLSPTPRTRC*SSSGKL
Trigger: GAGCTTGCCGGAGGAAGAGCAGCAGCGGGTTCTGGG...GGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp CTTTGCTTTCAAGAGGGACTGGCAGCTGGGCTGCAGCCTACTTTCTGTGGAGAGCCCAGAACCCGCTGCTaGTCTTCCTCCGGCAAGCTC +
Preference number: 4 (lower is better)
Translates to: LCFQEGLAAGLQPTFCGEPRTRC*SSSGKL
Trigger: GAGCTTGCCGGAGGAAGAGCAGCAGCGGGTTCTGGG...CTCTCCACAGAAAGTAGGCTGCAGCCCAGCTGCCAGTCCCTCTTGAAAGCAAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp CGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGGCCGGACTGGTGGTTTaGTTCTTATTGATGTTCAGC +
Preference number: 4 (lower is better)
Translates to: RNCKCRRGAGWARPALAQAGLVV*FLLMFS
Trigger: GCTGAACATCAATAAGAAGCAAACCACCAGTCCGGC...CTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp CAGGGAAGAGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTTGCCAATCTCCACCATaGGCTCCTTCAGCGGCAGGT +
Preference number: 4 (lower is better)
Translates to: QGRGTGPLPAFLKAAPLSCQSPP*APSAAG
Trigger: ACCTGCCGCTGAAGGAGCGCATGGTGGAGATTGGCA...AGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCTCTTCCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp TCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTCGCTTTCATCTTCACTaGTGGACTCAGAAGAGTCCC +
Preference number: 4 (lower is better)
Translates to: SMPELQMQKRGRVGPSSARFHLH*WTQKSP
Trigger: GGGACTCTTCTGAGTCCAGCAGTGAAGATGAAAGCG...AGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp CTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCTGGGACCAGCGGTCTTaGCCTTTGGGGGCGGCCATT +
Preference number: 4 (lower is better)
Translates to: LQAAGVEVSPNSLRLSPTWDQRS*PLGAAI
Trigger: AATGGCCGCCCCCAAAGGCCAAGACCGCTGGTCCCA...GGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp TCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCGTCAGCATATCTTCCTaGGACCAGCGGTCTTGGCCT +
Preference number: 4 (lower is better)
Translates to: SIVHAGTANAEEGQGGPVVSISS*DQRSWP
Trigger: AGGCCAAGACCGCTGGTCCCAGGAAGATATGCTGAC...GACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp CTCCCCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGTTGCTCATCTCCGGGTaGAGCTTCGCGTACTTGGCC +
Preference number: 4 (lower is better)
Translates to: LPSPLSMPELQMQKRGRVLLISG*SFAYLA
Trigger: GGCCAAGTACGCGAAGCTCCACCCGGAGATGAGCAA...CACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGGGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp CCCCCGAACATCCACCTTGCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCAGCAGCTTCCATTGCTaGCTGCATAGCACCATGCGC +
Preference number: 4 (lower is better)
Translates to: PPNIHLAAGCRCGGLTKLSSFHC*LHSTMR
Trigger: GCGCATGGTGCTATGCAGCCAGCAATGGAAGCTGCT...GAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGCAAGGTGGATGTTCGGGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp GGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCAACAGACACAGGCCGCTTaGGCTTCTCGGAGCCACCCT +
Preference number: 4 (lower is better)
Translates to: GCRCGGLTKLFKTLSHPQQTQAA*ASRSHP
Trigger: AGGGTGGCTCCGAGAAGCCCAAGCGGCCTGTGTCTG...TTGGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AGAGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCCAGAGTTTGTAGCAGCTaGAGGGGCCCGCATCTCACT +
Preference number: 4 (lower is better)
Translates to: RGTGPLPAFLKAAPLSPSRVCSS*RGPHLT
Trigger: AGTGAGATGCGGGCCCCTCCAGCTGCTACAAACTCT...GGAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp AGAGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCCGCGACTCTGTGGTTTTaGACTTGGAGCTGTCGTTGG +
Preference number: 4 (lower is better)
Translates to: RGTGPLPAFLKAAPLSPSATLWF*TWSCRW
Trigger: CCAACGACAGCTCCAAGTTCAAAACCACAGAGTCGC...GGAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp GGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCAACAGGGTGATCCTCCCTaGATCGGGCCAGGTTTCGCT +
Preference number: 4 (lower is better)
Translates to: GCRCGGLTKLFKTLSHPQQGDPP*IGPGFA
Trigger: AGCGAAACCTGGCCCGATTCAGGGAGGATCACCCTG...TTGGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp CCAAACTCCCCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCACATCGAACTTGTCCTTaGGCTGGCGCTCGGCCTTGG +
Preference number: 4 (lower is better)
Translates to: PNSPVHCPCRNCKCRRGAHRTCP*AGARPW
Trigger: CCAAGGCCGAGCGCCAGCTCAAGGACAAGTTCGATG...TGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGGGGAGTTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp ACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCCAGTTCACCTTCATGTTGGCCATaGGCTCCGCACAGTACAGGG +
Preference number: 4 (lower is better)
Translates to: TGPLPAFLKAAPLSPSSSPSCWP*APHSTG
Trigger: CCCTGTACTGTGCGGAGCTCATGGCCAACATGAAGG...TGAACTGGAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp CCCCAAACTCCCCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCCTTCATGTTGGCCATaGGCTCCGCACAGTACAGGG +
Preference number: 4 (lower is better)
Translates to: PQTPQSIVHAGTANAEEGPSCWP*APHSTG
Trigger: CCCTGTACTGTGCGGAGCTCATGGCCAACATGAAGG...CCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGGGGAGTTTGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp AGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCCTTGCCACCTTCCTGTaGAGGCTTCTTGGAGGCCGG +
Preference number: 4 (lower is better)
Translates to: SGEVWRVRDRTQGETKVVLATFL*RLLGGR
Trigger: CCGGCCTCCAAGAAGCCTTCACAGGAAGGTGGCAAG...GACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp TCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGCCGGACTGGTGGTTTaGTTCTTATTGATGTTCAGC +
Preference number: 4 (lower is better)
Translates to: SMPELQMQKRGRVGPSSAAGLVV*FLLMFS
Trigger: GCTGAACATCAATAAGAAGCAAACCACCAGTCCGGC...AGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GCCCTCCCAGTCCCAGAAATGACAACAGAGACGGCAGCCGAGATCGGTAGGAAATCTCGGAGCCACCCTTaGCACCTTCCTGTGAAGGCT +
Preference number: 4 (lower is better)
Translates to: ALPVPEMTTETAAEIGRKSRSHP*HLPVKA
Trigger: AGCCTTCACAGGAAGGTGGCAAGGGTGGCTCCGAGA...TTTCCTACCGATCTCGGCTGCCGTCTCTGTTGTCATTTCTGGGACTGGGAGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGGGCTTCCTCTCAGACTaGGCCTTCAGCGCAGCCTCC +
Preference number: 4 (lower is better)
Translates to: KVGKSGGYGTEHRERQRLGFLSD*AFSAAS
Trigger: GGAGGCTGCGCTGAAGGCGCAGTCTGAGAGGAAGCC...CAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp CAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCTCTCGGCTTCCTCTCAGACTaGGCCTTCAGCGCAGCCTCC +
Preference number: 4 (lower is better)
Translates to: QRLSKVVSWGDELCRGSLGFLSD*AFSAAS
Trigger: GGAGGCTGCGCTGAAGGCGCAGTCTGAGAGGAAGCC...GAGAGAGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCTCTCCGGCTTCCTCTCAGACTaGGCCTTCAGCGCAGCCTCC +
Preference number: 4 (lower is better)
Translates to: KGCQRLSVGEMSSAGALSGFLSD*AFSAAS
Trigger: GGAGGCTGCGCTGAAGGCGCAGTCTGAGAGGAAGCC...GGAGAGAGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGGGCTTCCTCTCAGACTaGGCCTTCAGCGCAGCCTCC +
Preference number: 4 (lower is better)
Translates to: KKVGKSGGYGTEHRERQRGFLSD*AFSAAS
Trigger: GGAGGCTGCGCTGAAGGCGCAGTCTGAGAGGAAGCC...CCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp TCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCACCCAGAGGTCCAAGTaGACCTTGTACTGCCTCTGT +
Preference number: 4 (lower is better)
Translates to: SIVHAGTANAEEGQGGPVTQRSK*TLYCLC
Trigger: ACAGAGGCAGTACAAGGTGCACTTGGACCTCTGGGT...GACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCCAGACCCAGAGGTCCAAGTaGACCTTGTACTGCCTCTGT +
Preference number: 4 (lower is better)
Translates to: RDRATACFLEGSTLVSLQTQRSK*TLYCLC
Trigger: ACAGAGGCAGTACAAGGTGCACTTGGACCTCTGGGT...CTGGAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp TTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCCGCTTTCATCTTCACTaGTGGACTCAGAAGAGTCCC +
Preference number: 4 (lower is better)
Translates to: LSMPELQMQKRGRVGPSSRFHLH*WTQKSP
Trigger: GGGACTCTTCTGAGTCCAGCAGTGAAGATGAAAGCG...GCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTGGGACCAGCGGTCTTaGCCTTTGGGGGCGGCCATT +
Preference number: 4 (lower is better)
Translates to: KVGKSGGYGTEHRERQRLWDQRS*PLGAAI
Trigger: AATGGCCGCCCCCAAAGGCCAAGACCGCTGGTCCCA...CAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp CTTGCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCTGGGACCAGCGGTCTTaGCCTTTGGGGGCGGCCATT +
Preference number: 4 (lower is better)
Translates to: LAAGCRCGGLTKLFKTLSWDQRS*PLGAAI
Trigger: AATGGCCGCCCCCAAAGGCCAAGACCGCTGGTCCCA...GGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGCAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp TTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGGAGCTGTCGTTGGATaGGAGGTTGTTCTTCATGCA +
Preference number: 4 (lower is better)
Translates to: LSMPELQMQKRGRVGPSSGAVVG*EVVLHA
Trigger: TGCATGAAGAACAACCTCCCATCCAACGACAGCTCC...GCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp ACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCCAGTTCATTGCTCATCTCCGGGTaGAGCTTCGCGTACTTGGCC +
Preference number: 4 (lower is better)
Translates to: TGPLPAFLKAAPLSPSSSLLISG*SFAYLA
Trigger: GGCCAAGTACGCGAAGCTCCACCCGGAGATGAGCAA...TGAACTGGAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp CACCTTGCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCCAGACACAGGCCGCTTaGGCTTCTCGGAGCCACCCT +
Preference number: 4 (lower is better)
Translates to: HLAAGCRCGGLTKLFKTLQTQAA*ASRSHP
Trigger: AGGGTGGCTCCGAGAAGCCCAAGCGGCCTGTGTCTG...GAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGCAAGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp CAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCTCTCCAGACACAGGCCGCTTaGGCTTCTCGGAGCCACCCT +
Preference number: 4 (lower is better)
Translates to: QRLSKVVSWGDELCRGSLQTQAA*ASRSHP
Trigger: AGGGTGGCTCCGAGAAGCCCAAGCGGCCTGTGTCTG...GAGAGAGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp GCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCAAACTCCAGACACAGGCCGCTTaGGCTTCTCGGAGCCACCCT +
Preference number: 4 (lower is better)
Translates to: AGVEVSPNSLRLSPTPKLQTQAA*ASRSHP
Trigger: AGGGTGGCTCCGAGAAGCCCAAGCGGCCTGTGTCTG...GAGTTTGGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCTATGCTGCGCGGTCCTaGGGAGACAGGCTCTTGACC +
Preference number: 4 (lower is better)
Translates to: SGEVWRVRDRTQGETKVVYAARS*GDRLLT
Trigger: GGTCAAGAGCCTGTCTCCCCAGGACCGCGCAGCATA...GACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp CCAAACTCCCCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCATATGCTGCGCGGTCCTaGGGAGACAGGCTCTTGACC +
Preference number: 4 (lower is better)
Translates to: PNSPVHCPCRNCKCRRGAYAARS*GDRLLT
Trigger: GGTCAAGAGCCTGTCTCCCCAGGACCGCGCAGCATA...TGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGGGGAGTTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp GGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCAATATGCTGCGCGGTCCTaGGGAGACAGGCTCTTGACC +
Preference number: 4 (lower is better)
Translates to: GCRCGGLTKLFKTLSHPQYAARS*GDRLLT
Trigger: GGTCAAGAGCCTGTCTCCCCAGGACCGCGCAGCATA...TTGGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp CTTTGCTTTCAAGAGGGACTGGCAGCTGGGCTGCAGCCTACTTTCTGTGGAGAGTATGCTGCGCGGTCCTaGGGAGACAGGCTCTTGACC +
Preference number: 4 (lower is better)
Translates to: LCFQEGLAAGLQPTFCGEYAARS*GDRLLT
Trigger: GGTCAAGAGCCTGTCTCCCCAGGACCGCGCAGCATA...CTCTCCACAGAAAGTAGGCTGCAGCCCAGCTGCCAGTCCCTCTTGAAAGCAAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp ATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTTGGGCCTCGGAGCTTaGTCATGTTCTTACGTTTAT +
Preference number: 4 (lower is better)
Translates to: MPELQMQKRGRVGPSSAGLGLGA*SCSYVY
Trigger: ATAAACGTAAGAACATGACCAAGCTCCGAGGCCCAA...GCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp AAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAGGGTGATCCTCCCTaGATCGGGCCAGGTTTCGCT +
Preference number: 4 (lower is better)
Translates to: KWGSLEGTGQNTGRDKGCQGDPP*IGPGFA
Trigger: AGCGAAACCTGGCCCGATTCAGGGAGGATCACCCTG...ACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp AAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCTCTCCCAGGGTGATCCTCCCTaGATCGGGCCAGGTTTCGCT +
Preference number: 4 (lower is better)
Translates to: KGCQRLSVGEMSSAGALSQGDPP*IGPGFA
Trigger: AGCGAAACCTGGCCCGATTCAGGGAGGATCACCCTG...GGAGAGAGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp TCTTTGCTTTCAAGAGGGACTGGCAGCTGGGCTGCAGCCTACTTTCTGTGGAGACAGGGTGATCCTCCCTaGATCGGGCCAGGTTTCGCT +
Preference number: 4 (lower is better)
Translates to: SLLSRGTGSWAAAYFLWRQGDPP*IGPGFA
Trigger: AGCGAAACCTGGCCCGATTCAGGGAGGATCACCCTG...TCTCCACAGAAAGTAGGCTGCAGCCCAGCTGCCAGTCCCTCTTGAAAGCAAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp AGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCAAACTCCCCATCGAACTTGTCCTTaGGCTGGCGCTCGGCCTTGG +
Preference number: 4 (lower is better)
Translates to: RCGGLTKLFKTLSHPQTPHRTCP*AGARPW
Trigger: CCAAGGCCGAGCGCCAGCTCAAGGACAAGTTCGATG...GGGAGTTTGGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp GGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGCATCGAACTTGTCCTTaGGCTGGCGCTCGGCCTTGG +
Preference number: 4 (lower is better)
Translates to: GRDKGCQRLSVGEMSSAGHRTCP*AGARPW
Trigger: CCAAGGCCGAGCGCCAGCTCAAGGACAAGTTCGATG...CCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp CCTTGGTTTGTTCCTGCTAGGGACACCATCTCCCAGGCCTCTACCGACCCTTTTCCTTCATGTTGGCCATaGGCTCCGCACAGTACAGGG +
Preference number: 4 (lower is better)
Translates to: PWFVPARDTISQASTDPFPSCWP*APHSTG
Trigger: CCCTGTACTGTGCGGAGCTCATGGCCAACATGAAGG...AAAAGGGTCGGTAGAGGCCTGGGAGATGGTGTCCCTAGCAGGAACAAACCAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp CTTGCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCTTGCCACCTTCCTGTaGAGGCTTCTTGGAGGCCGG +
Preference number: 4 (lower is better)
Translates to: LAAGCRCGGLTKLFKTLSLATFL*RLLGGR
Trigger: CCGGCCTCCAAGAAGCCTTCACAGGAAGGTGGCAAG...GGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGCAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp CAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCGCACCATGCGCTCTGTaGTGGGCACATCCTTCATGT +
Preference number: 4 (lower is better)
Translates to: QAAGVEVSPNSLRLSPTPAPCAL*WAHPSC
Trigger: ACATGAAGGATGTGCCCAGCACAGAGCGCATGGTGC...GGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GCCCTCCCAGTCCCAGAAATGACAACAGAGACGGCAGCCGAGATCGGTAGGAAAGCACCATGCGCTCTGTaGTGGGCACATCCTTCATGT +
Preference number: 4 (lower is better)
Translates to: ALPVPEMTTETAAEIGRKAPCAL*WAHPSC
Trigger: ACATGAAGGATGTGCCCAGCACAGAGCGCATGGTGC...TTTCCTACCGATCTCGGCTGCCGTCTCTGTTGTCATTTCTGGGACTGGGAGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp TTTCAAGAGGGACTGGCAGCTGGGCTGCAGCCTACTTTCTGTGGAGAGCCTACTGGCTGCATAGCACCATaGGCTCTGTGCTGGGCACAT +
Preference number: 4 (lower is better)
Translates to: FQEGLAAGLQPTFCGEPTGCIAP*ALCWAH
Trigger: ATGTGCCCAGCACAGAGCGCATGGTGCTATGCAGCC...AGTAGGCTCTCCACAGAAAGTAGGCTGCAGCCCAGCTGCCAGTCCCTCTTGAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGGCGCAGTCATGCTGTATCGCTCGCTCACGTGTGTGCACATCACACACACAGCGCTTCCATTGCTGGCTaGATAGCACCATGCGCTCTG +
Preference number: 4 (lower is better)
Translates to: RRSHAVSLAHVCAHHTHSASIAG*IAPCAL
Trigger: CAGAGCGCATGGTGCTATGCAGCCAGCAATGGAAGC...GCTGTGTGTGTGATGTGCACACACGTGAGCGAGCGATACAGCATGACTGCGCCT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGCCCAGAACCCGCTGCTaGTCTTCCTCCGGCAAGCTC +
Preference number: 4 (lower is better)
Translates to: GTGQNTGRDKGCQRLSVGPRTRC*SSSGKL
Trigger: GAGCTTGCCGGAGGAAGAGCAGCAGCGGGTTCTGGG...CCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGCCCAGAACCCGCTGCTaGTCTTCCTCCGGCAAGCTC +
Preference number: 4 (lower is better)
Translates to: RKKESGEVWRVRDRTQGEPRTRC*SSSGKL
Trigger: GAGCTTGCCGGAGGAAGAGCAGCAGCGGGTTCTGGG...CTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTCCCAGAACCCGCTGCTaGTCTTCCTCCGGCAAGCTC +
Preference number: 4 (lower is better)
Translates to: GGYGTEHRERQRLSKVVSPRTRC*SSSGKL
Trigger: GAGCTTGCCGGAGGAAGAGCAGCAGCGGGTTCTGGG...ACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCTCTCGGAGCCACCCTTaGCACCTTCCTGTGAAGGCT +
Preference number: 4 (lower is better)
Translates to: SGEVWRVRDRTQGETKVVSRSHP*HLPVKA
Trigger: AGCCTTCACAGGAAGGTGGCAAGGGTGGCTCCGAGA...GACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp CAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCCGTTCCTCCTGTAGCTaGCTTCGCTTCTCCTCAGAG +
Preference number: 4 (lower is better)
Translates to: QAAGVEVSPNSLRLSPTPRSSCS*LRFSSE
Trigger: CTCTGAGGAGAAGCGAAGGCAGCTACAGGAGGAACG...GGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTG
57% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACACAAGTCGTTCCACATaGGGGCCAGAAGGCGGGTCA +
Preference number: 4 (lower is better)
Translates to: AAGCRCGGLTKLFKTLSHTSRST*GPEGGS
Trigger: TGACCCGCCTTCTGGCCCGCATGTGGAACGACTTGT...GTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCACAAGTCGTTCCACATaGGGGCCAGAAGGCGGGTCA +
Preference number: 4 (lower is better)
Translates to: SGEVWRVRDRTQGETKVVTSRST*GPEGGS
Trigger: TGACCCGCCTTCTGGCCCGCATGTGGAACGACTTGT...GACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAGGCTTCCTCTCAGACTaGGCCTTCAGCGCAGCCTCC +
Preference number: 4 (lower is better)
Translates to: RKKVGKSGGYGTEHRERQGFLSD*AFSAAS
Trigger: GGAGGCTGCGCTGAAGGCGCAGTCTGAGAGGAAGCC...TTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTGGCTTCCTCTCAGACTaGGCCTTCAGCGCAGCCTCC +
Preference number: 4 (lower is better)
Translates to: RDKGCQRLSVGEMSSAGAGFLSD*AFSAAS
Trigger: GGAGGCTGCGCTGAAGGCGCAGTCTGAGAGGAAGCC...AGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCTGCCAATCTCCACCATaGGCTCCTTCAGCGGCAGGT +
Preference number: 4 (lower is better)
Translates to: SGEVWRVRDRTQGETKVVCQSPP*APSAAG
Trigger: ACCTGCCGCTGAAGGAGCGCATGGTGGAGATTGGCA...GACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AAGAGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCGTATTCTTTGTATGCTaGGCGGTCCTGGGGAGACAG +
Preference number: 4 (lower is better)
Translates to: KRDRATACFLEGSTLVSLVFFVC*AVLGRQ
Trigger: CTGTCTCCCCAGGACCGCGCAGCATACAAAGAATAC...GAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp GAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGGGACCAGCGGTCTTaGCCTTTGGGGGCGGCCATT +
Preference number: 4 (lower is better)
Translates to: EVWRVRDRTQGETKVVKGWDQRS*PLGAAI
Trigger: AATGGCCGCCCCCAAAGGCCAAGACCGCTGGTCCCA...ACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp GGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGTGGGACCAGCGGTCTTaGCCTTTGGGGGCGGCCATT +
Preference number: 4 (lower is better)
Translates to: GTGQNTGRDKGCQRLSVGWDQRS*PLGAAI
Trigger: AATGGCCGCCCCCAAAGGCCAAGACCGCTGGTCCCA...CCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGTGGGACCAGCGGTCTTaGCCTTTGGGGGCGGCCATT +
Preference number: 4 (lower is better)
Translates to: RKKESGEVWRVRDRTQGEWDQRS*PLGAAI
Trigger: AATGGCCGCCCCCAAAGGCCAAGACCGCTGGTCCCA...CTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCAGACACAGGCCGCTTaGGCTTCTCGGAGCCACCCT +
Preference number: 4 (lower is better)
Translates to: RDKGCQRLSVGEMSSAGAQTQAA*ASRSHP
Trigger: AGGGTGGCTCCGAGAAGCCCAAGCGGCCTGTGTCTG...AGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp GAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTCAGACACAGGCCGCTTaGGCTTCTCGGAGCCACCCT +
Preference number: 4 (lower is better)
Translates to: EVWRVRDRTQGETKVVKGQTQAA*ASRSHP
Trigger: AGGGTGGCTCCGAGAAGCCCAAGCGGCCTGTGTCTG...ACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp GGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTCAGACACAGGCCGCTTaGGCTTCTCGGAGCCACCCT +
Preference number: 4 (lower is better)
Translates to: GGYGTEHRERQRLSKVVSQTQAA*ASRSHP
Trigger: AGGGTGGCTCCGAGAAGCCCAAGCGGCCTGTGTCTG...ACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp ACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCCAGTTCAAGAGTTTGTAGCAGCTaGAGGGGCCCGCATCTCACT +
Preference number: 4 (lower is better)
Translates to: TGPLPAFLKAAPLSPSSSRVCSS*RGPHLT
Trigger: AGTGAGATGCGGGCCCCTCCAGCTGCTACAAACTCT...TGAACTGGAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTATGCTGCGCGGTCCTaGGGAGACAGGCTCTTGACC +
Preference number: 4 (lower is better)
Translates to: KKVGKSGGYGTEHRERQRYAARS*GDRLLT
Trigger: GGTCAAGAGCCTGTCTCCCCAGGACCGCGCAGCATA...CCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp CCCCAAACTCCCCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGGCTAGACTTGGGGTTTaGGCCTCGGAGCTTGGTCAT +
Preference number: 4 (lower is better)
Translates to: PQTPQSIVHAGTANAEEGARLGV*ASELGH
Trigger: ATGACCAAGCTCCGAGGCCCAAACCCCAAGTCTAGC...CCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGGGGAGTTTGGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp GCCCTCCCAGTCCCAGAAATGACAACAGAGACGGCAGCCGAGATCGGTAGGAAAGCGACTCTGTGGTTTTaGACTTGGAGCTGTCGTTGG +
Preference number: 4 (lower is better)
Translates to: ALPVPEMTTETAAEIGRKATLWF*TWSCRW
Trigger: CCAACGACAGCTCCAAGTTCAAAACCACAGAGTCGC...TTTCCTACCGATCTCGGCTGCCGTCTCTGTTGTCATTTCTGGGACTGGGAGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp CCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAAATCTCCACCCATTTaGGCTTGCACATATCTCCTG +
Preference number: 4 (lower is better)
Translates to: PLSMPELQMQKRGRVGPSKSPPI*ACTYLL
Trigger: CAGGAGATATGTGCAAGCTCAAATGGGTGGAGATTT...GGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp AACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCTAAATCTCCACCCATTTaGGCTTGCACATATCTCCTG +
Preference number: 4 (lower is better)
Translates to: NCKCRRGAGWARPALAQSKSPPI*ACTYLL
Trigger: CAGGAGATATGTGCAAGCTCAAATGGGTGGAGATTT...AGACTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp CCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGGAAGTAAGGGGTaGGAGGTTTCTTTGGAAAAT +
Preference number: 4 (lower is better)
Translates to: PLSMPELQMQKRGRVGPSSGSKG*EVSLEN
Trigger: ATTTTCCAAAGAAACCTCTCACCCCTTACTTCCGCT...GGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp AGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCAGGGTGATCCTCCCTaGATCGGGCCAGGTTTCGCT +
Preference number: 4 (lower is better)
Translates to: RDKGCQRLSVGEMSSAGAQGDPP*IGPGFA
Trigger: AGCGAAACCTGGCCCGATTCAGGGAGGATCACCCTG...AGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp CACCTTGCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCCCTTCATGTTGGCCATaGGCTCCGCACAGTACAGGG +
Preference number: 4 (lower is better)
Translates to: HLAAGCRCGGLTKLFKTLPSCWP*APHSTG
Trigger: CCCTGTACTGTGCGGAGCTCATGGCCAACATGAAGG...GAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGCAAGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp AGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCTTGCCACCTTCCTGTaGAGGCTTCTTGGAGGCCGG +
Preference number: 4 (lower is better)
Translates to: RDKGCQRLSVGEMSSAGALATFL*RLLGGR
Trigger: CCGGCCTCCAAGAAGCCTTCACAGGAAGGTGGCAAG...AGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp GGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGCTTGCCACCTTCCTGTaGAGGCTTCTTGGAGGCCGG +
Preference number: 4 (lower is better)
Translates to: GYGTEHRERQRLSKVVSWLATFL*RLLGGR
Trigger: CCGGCCTCCAAGAAGCCTTCACAGGAAGGTGGCAAG...CCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp AGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGCTTGCCACCTTCCTGTaGAGGCTTCTTGGAGGCCGG +
Preference number: 4 (lower is better)
Translates to: RKKESGEVWRVRDRTQGELATFL*RLLGGR
Trigger: CCGGCCTCCAAGAAGCCTTCACAGGAAGGTGGCAAG...CTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp GGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTCTTGCCACCTTCCTGTaGAGGCTTCTTGGAGGCCGG +
Preference number: 4 (lower is better)
Translates to: GGYGTEHRERQRLSKVVSLATFL*RLLGGR
Trigger: CCGGCCTCCAAGAAGCCTTCACAGGAAGGTGGCAAG...ACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp GAAAGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGCCTGGGGTGGAGGCTaGGCCTCAGTTGGAGTCAGA +
Preference number: 4 (lower is better)
Translates to: ERKKESGEVWRVRDRTQGAWGGG*ASVGVR
Trigger: TCTGACTCCAACTGAGGCTCAGCCTCCACCCCAGGC...TCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006754.14
CDS-3UTR GCA 90 bp ATCCCAGGCCCTCCCAGTCCCAGAAATGACAACAGAGACGGCAGCCGAGATCGGGGAGGTTGTTCTTCATaGATTCCAGCAGAGTCAGCA +
Preference number: 4 (lower is better)
Translates to: IPGPPSPRNDNRDGSRDRGGCSS*IPAESA
Trigger: TGCTGACTCTGCTGGAATGCATGAAGAACAACCTCC...CCGATCTCGGCTGCCGTCTCTGTTGTCATTTCTGGGACTGGGAGGGCCTGGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GGGAAGAGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCGGAGGTTGTTCTTCATaGATTCCAGCAGAGTCAGCA +
Preference number: 4 (lower is better)
Translates to: GKRDRATACFLEGSTLVSGGCSS*IPAESA
Trigger: TGCTGACTCTGCTGGAATGCATGAAGAACAACCTCC...GGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCTCTTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp CTTTGCTTTCAAGAGGGACTGGCAGCTGGGCTGCAGCCTACTTTCTGTGGAGAGGCACCATGCGCTCTGTaGTGGGCACATCCTTCATGT +
Preference number: 4 (lower is better)
Translates to: LCFQEGLAAGLQPTFCGEAPCAL*WAHPSC
Trigger: ACATGAAGGATGTGCCCAGCACAGAGCGCATGGTGC...CTCTCCACAGAAAGTAGGCTGCAGCCCAGCTGCCAGTCCCTCTTGAAAGCAAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCTCTCCGGCTGCATAGCACCATaGGCTCTGTGCTGGGCACAT +
Preference number: 4 (lower is better)
Translates to: KGCQRLSVGEMSSAGALSGCIAP*ALCWAH
Trigger: ATGTGCCCAGCACAGAGCGCATGGTGCTATGCAGCC...GGAGAGAGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp CAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCTCTCGGCTGCATAGCACCATaGGCTCTGTGCTGGGCACAT +
Preference number: 4 (lower is better)
Translates to: QRLSKVVSWGDELCRGSLGCIAP*ALCWAH
Trigger: ATGTGCCCAGCACAGAGCGCATGGTGCTATGCAGCC...GAGAGAGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGGGCTGCATAGCACCATaGGCTCTGTGCTGGGCACAT +
Preference number: 4 (lower is better)
Translates to: KKVGKSGGYGTEHRERQRGCIAP*ALCWAH
Trigger: ATGTGCCCAGCACAGAGCGCATGGTGCTATGCAGCC...CCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCCCCAGAACCCGCTGCTaGTCTTCCTCCGGCAAGCTC +
Preference number: 4 (lower is better)
Translates to: EHRERQRLSKVVSWGDELPRTRC*SSSGKL
Trigger: GAGCTTGCCGGAGGAAGAGCAGCAGCGGGTTCTGGG...GAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp TCCCAGGCCCTCCCAGTCCCAGAAATGACAACAGAGACGGCAGCCGAGATCGGTGCCGGACTGGTGGTTTaGTTCTTATTGATGTTCAGC +
Preference number: 4 (lower is better)
Translates to: SQALPVPEMTTETAAEIGAGLVV*FLLMFS
Trigger: GCTGAACATCAATAAGAAGCAAACCACCAGTCCGGC...ACCGATCTCGGCTGCCGTCTCTGTTGTCATTTCTGGGACTGGGAGGGCCTGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp CACCTTGCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCTCGGAGCCACCCTTaGCACCTTCCTGTGAAGGCT +
Preference number: 4 (lower is better)
Translates to: HLAAGCRCGGLTKLFKTLSRSHP*HLPVKA
Trigger: AGCCTTCACAGGAAGGTGGCAAGGGTGGCTCCGAGA...GAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGCAAGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTACAAGTCGTTCCACATaGGGGCCAGAAGGCGGGTCA +
Preference number: 4 (lower is better)
Translates to: RKWGSLEGTGQNTGRDKGTSRST*GPEGGS
Trigger: TGACCCGCCTTCTGGCCCGCATGTGGAACGACTTGT...ACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCTCTCCACAAGTCGTTCCACATaGGGGCCAGAAGGCGGGTCA +
Preference number: 4 (lower is better)
Translates to: KGCQRLSVGEMSSAGALSTSRST*GPEGGS
Trigger: TGACCCGCCTTCTGGCCCGCATGTGGAACGACTTGT...GGAGAGAGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCAAACTCACAAGTCGTTCCACATaGGGGCCAGAAGGCGGGTCA +
Preference number: 4 (lower is better)
Translates to: AGVEVSPNSLRLSPTPKLTSRST*GPEGGS
Trigger: TGACCCGCCTTCTGGCCCGCATGTGGAACGACTTGT...GAGTTTGGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTACAAGTCGTTCCACATaGGGGCCAGAAGGCGGGTCA +
Preference number: 4 (lower is better)
Translates to: KWGSLEGTGQNTGRDKGCTSRST*GPEGGS
Trigger: TGACCCGCCTTCTGGCCCGCATGTGGAACGACTTGT...ACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCAAACTCCCGATGACACTCTGCTaGCAGATCTCCTCAGCCCTC +
Preference number: 4 (lower is better)
Translates to: AGVEVSPNSLRLSPTPKLPMTLC*QISSAL
Trigger: GAGGGCTGAGGAGATCTGGCAGCAGAGTGTCATCGG...GAGTTTGGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp CAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCTCTCCCGATGACACTCTGCTaGCAGATCTCCTCAGCCCTC +
Preference number: 4 (lower is better)
Translates to: QRLSKVVSWGDELCRGSLPMTLC*QISSAL
Trigger: GAGGGCTGAGGAGATCTGGCAGCAGAGTGTCATCGG...GAGAGAGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGCCGATGACACTCTGCTaGCAGATCTCCTCAGCCCTC +
Preference number: 4 (lower is better)
Translates to: KVGKSGGYGTEHRERQRLPMTLC*QISSAL
Trigger: GAGGGCTGAGGAGATCTGGCAGCAGAGTGTCATCGG...CAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp CCTTGGTTTGTTCCTGCTAGGGACACCATCTCCCAGGCCTCTACCGACCCTTTTTCTCCGATGACACTCTaGTGCCAGATCTCCTCAGCC +
Preference number: 4 (lower is better)
Translates to: PWFVPARDTISQASTDPFSPMTL*CQISSA
Trigger: GGCTGAGGAGATCTGGCAGCAGAGTGTCATCGGAGA...AAAAGGGTCGGTAGAGGCCTGGGAGATGGTGTCCCTAGCAGGAACAAACCAAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGCCAATCTCCACCATaGGCTCCTTCAGCGGCAGGT +
Preference number: 4 (lower is better)
Translates to: RKWGSLEGTGQNTGRDKGCQSPP*APSAAG
Trigger: ACCTGCCGCTGAAGGAGCGCATGGTGGAGATTGGCA...ACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGTGCCAATCTCCACCATaGGCTCCTTCAGCGGCAGGT +
Preference number: 4 (lower is better)
Translates to: GRDKGCQRLSVGEMSSAGCQSPP*APSAAG
Trigger: ACCTGCCGCTGAAGGAGCGCATGGTGGAGATTGGCA...CCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGGCGCAGTCATGCTGTATCGCTCGCTCACGTGTGTGCACATCACACACACAGCGTATTCTTTGTATGCTaGGCGGTCCTGGGGAGACAG +
Preference number: 4 (lower is better)
Translates to: RRSHAVSLAHVCAHHTHSVFFVC*AVLGRQ
Trigger: CTGTCTCCCCAGGACCGCGCAGCATACAAAGAATAC...GCTGTGTGTGTGATGTGCACACACGTGAGCGAGCGATACAGCATGACTGCGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp CCTCCAAAACAACTACACTGTTGTGTTGACCCCTCCACACGCCCAATATGGAGTTGGGACCAGCGGTCTTaGCCTTTGGGGGCGGCCATT +
Preference number: 4 (lower is better)
Translates to: PPKQLHCCVDPSTRPIWSWDQRS*PLGAAI
Trigger: AATGGCCGCCCCCAAAGGCCAAGACCGCTGGTCCCA...ACTCCATATTGGGCGTGTGGAGGGGTCAACACAACAGTGTAGTTGTTTTGGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000128016.2
CDS-3UTR CCA 90 bp AAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTTTGCTCATCTCCGGGTaGAGCTTCGCGTACTTGGCC +
Preference number: 4 (lower is better)
Translates to: KWGSLEGTGQNTGRDKGCLLISG*SFAYLA
Trigger: GGCCAAGTACGCGAAGCTCCACCCGGAGATGAGCAA...ACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp TCTTTGCTTTCAAGAGGGACTGGCAGCTGGGCTGCAGCCTACTTTCTGTGGAGATTGCTCATCTCCGGGTaGAGCTTCGCGTACTTGGCC +
Preference number: 4 (lower is better)
Translates to: SLLSRGTGSWAAAYFLWRLLISG*SFAYLA
Trigger: GGCCAAGTACGCGAAGCTCCACCCGGAGATGAGCAA...TCTCCACAGAAAGTAGGCTGCAGCCCAGCTGCCAGTCCCTCTTGAAAGCAAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp GAAAGAGGGAGCAGACCTGAGAACTCAAAGGAAATGGGGATGGCCAGAGGACACTTGCTCATCTCCGGGTaGAGCTTCGCGTACTTGGCC +
Preference number: 4 (lower is better)
Translates to: ERGSRPENSKEMGMARGHLLISG*SFAYLA
Trigger: GGCCAAGTACGCGAAGCTCCACCCGGAGATGAGCAA...GTGTCCTCTGGCCATCCCCATTTCCTTTGAGTTCTCAGGTCTGCTCCCTCTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp GGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCAAAGAGTTTGTAGCAGCTaGAGGGGCCCGCATCTCACT +
Preference number: 4 (lower is better)
Translates to: GCRCGGLTKLFKTLSHPQRVCSS*RGPHLT
Trigger: AGTGAGATGCGGGCCCCTCCAGCTGCTACAAACTCT...TTGGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAATATGCTGCGCGGTCCTaGGGAGACAGGCTCTTGACC +
Preference number: 4 (lower is better)
Translates to: RKKVGKSGGYGTEHRERQYAARS*GDRLLT
Trigger: GGTCAAGAGCCTGTCTCCCCAGGACCGCGCAGCATA...TTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGTATGCTGCGCGGTCCTaGGGAGACAGGCTCTTGACC +
Preference number: 4 (lower is better)
Translates to: KESGEVWRVRDRTQGETKYAARS*GDRLLT
Trigger: GGTCAAGAGCCTGTCTCCCCAGGACCGCGCAGCATA...CTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp GCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACGCGACTCTGTGGTTTTaGACTTGGAGCTGTCGTTGG +
Preference number: 4 (lower is better)
Translates to: AAGCRCGGLTKLFKTLSHATLWF*TWSCRW
Trigger: CCAACGACAGCTCCAAGTTCAAAACCACAGAGTCGC...GTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp AACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCTAATCCGGGTGTTTCTTaGGCTTTTTGCCTTTGTAAG +
Preference number: 4 (lower is better)
Translates to: NCKCRRGAGWARPALAQSNPGVS*AFCLCK
Trigger: CTTACAAAGGCAAAAAGCTCAAGAAACACCCGGATT...AGACTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp AAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTCAGGGTGATCCTCCCTaGATCGGGCCAGGTTTCGCT +
Preference number: 4 (lower is better)
Translates to: KSGGYGTEHRERQRLSKVQGDPP*IGPGFA
Trigger: AGCGAAACCTGGCCCGATTCAGGGAGGATCACCCTG...AACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp AGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGCAGGGTGATCCTCCCTaGATCGGGCCAGGTTTCGCT +
Preference number: 4 (lower is better)
Translates to: RVRDRTQGETKVVKGCQLQGDPP*IGPGFA
Trigger: AGCGAAACCTGGCCCGATTCAGGGAGGATCACCCTG...CAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp AAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGCCTTCATGTTGGCCATaGGCTCCGCACAGTACAGGG +
Preference number: 4 (lower is better)
Translates to: KESGEVWRVRDRTQGETKPSCWP*APHSTG
Trigger: CCCTGTACTGTGCGGAGCTCATGGCCAACATGAAGG...CTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp GAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTCCTTCATGTTGGCCATaGGCTCCGCACAGTACAGGG +
Preference number: 4 (lower is better)
Translates to: EVWRVRDRTQGETKVVKGPSCWP*APHSTG
Trigger: CCCTGTACTGTGCGGAGCTCATGGCCAACATGAAGG...ACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp AGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCTCCTTCATGTTGGCCATaGGCTCCGCACAGTACAGGG +
Preference number: 4 (lower is better)
Translates to: RQRLSKVVSWGDELCRGSPSCWP*APHSTG
Trigger: CCCTGTACTGTGCGGAGCTCATGGCCAACATGAAGG...AGAGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp GAAAGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGACTTGCCACCTTCCTGTaGAGGCTTCTTGGAGGCCGG +
Preference number: 4 (lower is better)
Translates to: ERKKESGEVWRVRDRTQGLATFL*RLLGGR
Trigger: CCGGCCTCCAAGAAGCCTTCACAGGAAGGTGGCAAG...TCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp AGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGCTTGCCACCTTCCTGTaGAGGCTTCTTGGAGGCCGG +
Preference number: 4 (lower is better)
Translates to: RVRDRTQGETKVVKGCQLLATFL*RLLGGR
Trigger: CCGGCCTCCAAGAAGCCTTCACAGGAAGGTGGCAAG...CAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCTTTTTCCCAATCCATGTaGGACTCTGTGGTTTTGAAC +
Preference number: 4 (lower is better)
Translates to: NCKCRRGAGWARPALAQSFSQSM*DSVVLN
Trigger: GTTCAAAACCACAGAGTCGCACATGGATTGGGAAAA...AGACTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGCACCATGCGCTCTGTaGTGGGCACATCCTTCATGT +
Preference number: 4 (lower is better)
Translates to: GKSGGYGTEHRERQRLSKAPCAL*WAHPSC
Trigger: ACATGAAGGATGTGCCCAGCACAGAGCGCATGGTGC...CTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGCTGCATAGCACCATaGGCTCTGTGCTGGGCACAT +
Preference number: 4 (lower is better)
Translates to: ERKWGSLEGTGQNTGRDKGCIAP*ALCWAH
Trigger: ATGTGCCCAGCACAGAGCGCATGGTGCTATGCAGCC...TTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCTGGCTGCATAGCACCATaGGCTCTGTGCTGGGCACAT +
Preference number: 4 (lower is better)
Translates to: RQRLSKVVSWGDELCRGSGCIAP*ALCWAH
Trigger: ATGTGCCCAGCACAGAGCGCATGGTGCTATGCAGCC...AGAGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTGCTTCCATTGCTGGCTaGATAGCACCATGCGCTCTG +
Preference number: 4 (lower is better)
Translates to: KWGSLEGTGQNTGRDKGCASIAG*IAPCAL
Trigger: CAGAGCGCATGGTGCTATGCAGCCAGCAATGGAAGC...ACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCTCTCCGCTTCCATTGCTGGCTaGATAGCACCATGCGCTCTG +
Preference number: 4 (lower is better)
Translates to: KGCQRLSVGEMSSAGALSASIAG*IAPCAL
Trigger: CAGAGCGCATGGTGCTATGCAGCCAGCAATGGAAGC...GGAGAGAGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCGCTTCCATTGCTGGCTaGATAGCACCATGCGCTCTG +
Preference number: 4 (lower is better)
Translates to: ERQRLSKVVSWGDELCRGASIAG*IAPCAL
Trigger: CAGAGCGCATGGTGCTATGCAGCCAGCAATGGAAGC...GCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAATCTCGGAGCCACCCTTaGCACCTTCCTGTGAAGGCT +
Preference number: 4 (lower is better)
Translates to: ERKWGSLEGTGQNTGRDKSRSHP*HLPVKA
Trigger: AGCCTTCACAGGAAGGTGGCAAGGGTGGCTCCGAGA...TTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp CACCTTGCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCCGTTCCTCCTGTAGCTaGCTTCGCTTCTCCTCAGAG +
Preference number: 4 (lower is better)
Translates to: HLAAGCRCGGLTKLFKTLRSSCS*LRFSSE
Trigger: CTCTGAGGAGAAGCGAAGGCAGCTACAGGAGGAACG...GAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGCAAGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTACAAGTCGTTCCACATaGGGGCCAGAAGGCGGGTCA +
Preference number: 4 (lower is better)
Translates to: EVWRVRDRTQGETKVVKGTSRST*GPEGGS
Trigger: TGACCCGCCTTCTGGCCCGCATGTGGAACGACTTGT...ACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGCCGATGACACTCTGCTaGCAGATCTCCTCAGCCCTC +
Preference number: 4 (lower is better)
Translates to: GTGQNTGRDKGCQRLSVGPMTLC*QISSAL
Trigger: GAGGGCTGAGGAGATCTGGCAGCAGAGTGTCATCGG...CCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAACCGATGACACTCTGCTaGCAGATCTCCTCAGCCCTC +
Preference number: 4 (lower is better)
Translates to: ERKWGSLEGTGQNTGRDKPMTLC*QISSAL
Trigger: GAGGGCTGAGGAGATCTGGCAGCAGAGTGTCATCGG...TTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGCCGATGACACTCTGCTaGCAGATCTCCTCAGCCCTC +
Preference number: 4 (lower is better)
Translates to: RKKESGEVWRVRDRTQGEPMTLC*QISSAL
Trigger: GAGGGCTGAGGAGATCTGGCAGCAGAGTGTCATCGG...CTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp CTTGCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCTCTCCGATGACACTCTaGTGCCAGATCTCCTCAGCC +
Preference number: 4 (lower is better)
Translates to: LAAGCRCGGLTKLFKTLSSPMTL*CQISSA
Trigger: GGCTGAGGAGATCTGGCAGCAGAGTGTCATCGGAGA...GGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTCTCCGATGACACTCTaGTGCCAGATCTCCTCAGCC +
Preference number: 4 (lower is better)
Translates to: RKWGSLEGTGQNTGRDKGSPMTL*CQISSA
Trigger: GGCTGAGGAGATCTGGCAGCAGAGTGTCATCGGAGA...ACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCTCCGATGACACTCTaGTGCCAGATCTCCTCAGCC +
Preference number: 4 (lower is better)
Translates to: KVGKSGGYGTEHRERQRLSPMTL*CQISSA
Trigger: GGCTGAGGAGATCTGGCAGCAGAGTGTCATCGGAGA...CAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGTGCCAATCTCCACCATaGGCTCCTTCAGCGGCAGGT +
Preference number: 4 (lower is better)
Translates to: GTGQNTGRDKGCQRLSVGCQSPP*APSAAG
Trigger: ACCTGCCGCTGAAGGAGCGCATGGTGGAGATTGGCA...CCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGTGCCAATCTCCACCATaGGCTCCTTCAGCGGCAGGT +
Preference number: 4 (lower is better)
Translates to: KESGEVWRVRDRTQGETKCQSPP*APSAAG
Trigger: ACCTGCCGCTGAAGGAGCGCATGGTGGAGATTGGCA...CTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCACCCAGAGGTCCAAGTaGACCTTGTACTGCCTCTGT +
Preference number: 4 (lower is better)
Translates to: SGEVWRVRDRTQGETKVVTQRSK*TLYCLC
Trigger: ACAGAGGCAGTACAAGGTGCACTTGGACCTCTGGGT...GACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp CTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCGTATTCTTTGTATGCTaGGCGGTCCTGGGGAGACAG +
Preference number: 4 (lower is better)
Translates to: LQAAGVEVSPNSLRLSPTVFFVC*AVLGRQ
Trigger: CTGTCTCCCCAGGACCGCGCAGCATACAAAGAATAC...GGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCGTATTCTTTGTATGCTaGGCGGTCCTGGGGAGACAG +
Preference number: 4 (lower is better)
Translates to: SGEVWRVRDRTQGETKVVVFFVC*AVLGRQ
Trigger: CTGTCTCCCCAGGACCGCGCAGCATACAAAGAATAC...GACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp CCCCAAACTCCCCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCGCTTTCATCTTCACTaGTGGACTCAGAAGAGTCCC +
Preference number: 4 (lower is better)
Translates to: PQTPQSIVHAGTANAEEGRFHLH*WTQKSP
Trigger: GGGACTCTTCTGAGTCCAGCAGTGAAGATGAAAGCG...CCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGGGGAGTTTGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp GCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCAAACTCCCATTTCCAGGTCTGTaGGACAGTCCGCTTCTCCGT +
Preference number: 4 (lower is better)
Translates to: AGVEVSPNSLRLSPTPKLPFPGL*DSPLLR
Trigger: ACGGAGAAGCGGACTGTCCCACAGACCTGGAAATGG...GAGTTTGGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp CACCTTGCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCGTCAGCATATCTTCCTaGGACCAGCGGTCTTGGCCT +
Preference number: 4 (lower is better)
Translates to: HLAAGCRCGGLTKLFKTLVSISS*DQRSWP
Trigger: AGGCCAAGACCGCTGGTCCCAGGAAGATATGCTGAC...GAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGCAAGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp GAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCGTCAGCATATCTTCCTaGGACCAGCGGTCTTGGCCT +
Preference number: 4 (lower is better)
Translates to: ERQRLSKVVSWGDELCRGVSISS*DQRSWP
Trigger: AGGCCAAGACCGCTGGTCCCAGGAAGATATGCTGAC...GCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp TGTGTTGACCCCTCCACACGCCCAATATGGAGTCCCTTTTGTCTCTCTAAGGCCGTCAGCATATCTTCCTaGGACCAGCGGTCTTGGCCT +
Preference number: 4 (lower is better)
Translates to: CVDPSTRPIWSPFCLSKAVSISS*DQRSWP
Trigger: AGGCCAAGACCGCTGGTCCCAGGAAGATATGCTGAC...GGCCTTAGAGAGACAAAAGGGACTCCATATTGGGCGTGTGGAGGGGTCAACACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128016.2
CDS-3UTR CCA 90 bp AGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTGTCAGCATATCTTCCTaGGACCAGCGGTCTTGGCCT +
Preference number: 4 (lower is better)
Translates to: RKWGSLEGTGQNTGRDKGVSISS*DQRSWP
Trigger: AGGCCAAGACCGCTGGTCCCAGGAAGATATGCTGAC...ACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp CAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCGGAGCTGTCGTTGGATaGGAGGTTGTTCTTCATGCA +
Preference number: 4 (lower is better)
Translates to: QAAGVEVSPNSLRLSPTPGAVVG*EVVLHA
Trigger: TGCATGAAGAACAACCTCCCATCCAACGACAGCTCC...GGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AAGAGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCACTTGGAGCTGTCGTTaGATGGGAGGTTGTTCTTCA +
Preference number: 4 (lower is better)
Translates to: KRDRATACFLEGSTLVSLTWSCR*MGGCSS
Trigger: TGAAGAACAACCTCCCATCCAACGACAGCTCCAAGT...GAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCTCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp CAGGGAAGAGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTACTTGGAGCTGTCGTTaGATGGGAGGTTGTTCTTCA +
Preference number: 4 (lower is better)
Translates to: QGRGTGPLPAFLKAAPLSTWSCR*MGGCSS
Trigger: TGAAGAACAACCTCCCATCCAACGACAGCTCCAAGT...AGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCTCTTCCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGTTGCTCATCTCCGGGTaGAGCTTCGCGTACTTGGCC +
Preference number: 4 (lower is better)
Translates to: KESGEVWRVRDRTQGETKLLISG*SFAYLA
Trigger: GGCCAAGTACGCGAAGCTCCACCCGGAGATGAGCAA...CTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp GGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGTTGCTCATCTCCGGGTaGAGCTTCGCGTACTTGGCC +
Preference number: 4 (lower is better)
Translates to: GYGTEHRERQRLSKVVSWLLISG*SFAYLA
Trigger: GGCCAAGTACGCGAAGCTCCACCCGGAGATGAGCAA...CCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp ATCCCAGGCCCTCCCAGTCCCAGAAATGACAACAGAGACGGCAGCCGAGATCGGTTGGGCCTCGGAGCTTaGTCATGTTCTTACGTTTAT +
Preference number: 4 (lower is better)
Translates to: IPGPPSPRNDNRDGSRDRLGLGA*SCSYVY
Trigger: ATAAACGTAAGAACATGACCAAGCTCCGAGGCCCAA...CCGATCTCGGCTGCCGTCTCTGTTGTCATTTCTGGGACTGGGAGGGCCTGGGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp CAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCTCTCGCTAGACTTGGGGTTTaGGCCTCGGAGCTTGGTCAT +
Preference number: 4 (lower is better)
Translates to: QRLSKVVSWGDELCRGSLARLGV*ASELGH
Trigger: ATGACCAAGCTCCGAGGCCCAAACCCCAAGTCTAGC...GAGAGAGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp CACCTTGCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCGCTAGACTTGGGGTTTaGGCCTCGGAGCTTGGTCAT +
Preference number: 4 (lower is better)
Translates to: HLAAGCRCGGLTKLFKTLARLGV*ASELGH
Trigger: ATGACCAAGCTCCGAGGCCCAAACCCCAAGTCTAGC...GAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGCAAGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR CAA 72 bp GGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTaGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCTC +
Preference number: 4 (lower is better)
Translates to: GQNTGRDKGCQR*SVGEMSSAGAL
Trigger: GAGAGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR CAA 72 bp GGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTaGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGC +
Preference number: 4 (lower is better)
Translates to: GGYGTEHRERQR*SKVVSWGDELC
Trigger: GCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp AACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCTCTTGCACATATCTCCTaGAAAATCCTTAAACGCAAC +
Preference number: 4 (lower is better)
Translates to: NCKCRRGAGWARPALAQSLAHIS*KILKRN
Trigger: GTTGCGTTTAAGGATTTTTCAGGAGATATGTGCAAG...AGACTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp CTCCCCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGAAATCTCCACCCATTTaGGCTTGCACATATCTCCTG +
Preference number: 4 (lower is better)
Translates to: LPSPLSMPELQMQKRGRVKSPPI*ACTYLL
Trigger: CAGGAGATATGTGCAAGCTCAAATGGGTGGAGATTT...CACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGGGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp CTCCCCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGAGCGGAAGTAAGGGGTaGGAGGTTTCTTTGGAAAAT +
Preference number: 4 (lower is better)
Translates to: LPSPLSMPELQMQKRGRVSGSKG*EVSLEN
Trigger: ATTTTCCAAAGAAACCTCTCACCCCTTACTTCCGCT...CACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGGGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCCAGTTTTCCCAATCCATGTaGGACTCTGTGGTTTTGAAC +
Preference number: 4 (lower is better)
Translates to: RDRATACFLEGSTLVSLQFSQSM*DSVVLN
Trigger: GTTCAAAACCACAGAGTCGCACATGGATTGGGAAAA...CTGGAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGCACCATGCGCTCTGTaGTGGGCACATCCTTCATGT +
Preference number: 4 (lower is better)
Translates to: GYGTEHRERQRLSKVVSWAPCAL*WAHPSC
Trigger: ACATGAAGGATGTGCCCAGCACAGAGCGCATGGTGC...CCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTGCTTCCATTGCTGGCTaGATAGCACCATGCGCTCTG +
Preference number: 4 (lower is better)
Translates to: EVWRVRDRTQGETKVVKGASIAG*IAPCAL
Trigger: CAGAGCGCATGGTGCTATGCAGCCAGCAATGGAAGC...ACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp CTTGCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCGAGAGCAGCTTCCATTaGTGGCTGCATAGCACCATG +
Preference number: 4 (lower is better)
Translates to: LAAGCRCGGLTKLFKTLSESSFH*WLHSTM
Trigger: CATGGTGCTATGCAGCCAGCAATGGAAGCTGCTCTC...GGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGAGAGCAGCTTCCATTaGTGGCTGCATAGCACCATG +
Preference number: 4 (lower is better)
Translates to: GKSGGYGTEHRERQRLSKESSFH*WLHSTM
Trigger: CATGGTGCTATGCAGCCAGCAATGGAAGCTGCTCTC...CTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTGAGAGCAGCTTCCATTaGTGGCTGCATAGCACCATG +
Preference number: 4 (lower is better)
Translates to: KWGSLEGTGQNTGRDKGCESSFH*WLHSTM
Trigger: CATGGTGCTATGCAGCCAGCAATGGAAGCTGCTCTC...ACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp CACCTTGCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCGAGAGCAGCTTCCATTaGTGGCTGCATAGCACCATG +
Preference number: 4 (lower is better)
Translates to: HLAAGCRCGGLTKLFKTLESSFH*WLHSTM
Trigger: CATGGTGCTATGCAGCCAGCAATGGAAGCTGCTCTC...GAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGCAAGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGCGTTCCTCCTGTAGCTaGCTTCGCTTCTCCTCAGAG +
Preference number: 4 (lower is better)
Translates to: RERQRLSKVVSWGDELCRRSSCS*LRFSSE
Trigger: CTCTGAGGAGAAGCGAAGGCAGCTACAGGAGGAACG...CCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGCGTTCCTCCTGTAGCTaGCTTCGCTTCTCCTCAGAG +
Preference number: 4 (lower is better)
Translates to: RKKESGEVWRVRDRTQGERSSCS*LRFSSE
Trigger: CTCTGAGGAGAAGCGAAGGCAGCTACAGGAGGAACG...CTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTCGTTCCTCCTGTAGCTaGCTTCGCTTCTCCTCAGAG +
Preference number: 4 (lower is better)
Translates to: EVWRVRDRTQGETKVVKGRSSCS*LRFSSE
Trigger: CTCTGAGGAGAAGCGAAGGCAGCTACAGGAGGAACG...ACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AAGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAACAAGTCGTTCCACATaGGGGCCAGAAGGCGGGTCA +
Preference number: 4 (lower is better)
Translates to: KKERKWGSLEGTGQNTGRTSRST*GPEGGS
Trigger: TGACCCGCCTTCTGGCCCGCATGTGGAACGACTTGT...TCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGTCTCCGATGACACTCTaGTGCCAGATCTCCTCAGCC +
Preference number: 4 (lower is better)
Translates to: GYGTEHRERQRLSKVVSWSPMTL*CQISSA
Trigger: GGCTGAGGAGATCTGGCAGCAGAGTGTCATCGGAGA...CCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAATCTCCGATGACACTCTaGTGCCAGATCTCCTCAGCC +
Preference number: 4 (lower is better)
Translates to: RKKVGKSGGYGTEHRERQSPMTL*CQISSA
Trigger: GGCTGAGGAGATCTGGCAGCAGAGTGTCATCGGAGA...TTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp TTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCTCGTTTTTGGTCTTCTaGTGCCTTCTTAATCCACAT +
Preference number: 4 (lower is better)
Translates to: LSMPELQMQKRGRVGPSSSFLVF*CLLNPH
Trigger: ATGTGGATTAAGAAGGCAGCAGAAGACCAAAAACGA...GCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AAGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGATGCCAATCTCCACCATaGGCTCCTTCAGCGGCAGGT +
Preference number: 4 (lower is better)
Translates to: KKERKWGSLEGTGQNTGRCQSPP*APSAAG
Trigger: ACCTGCCGCTGAAGGAGCGCATGGTGGAGATTGGCA...TCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp CACCTTGCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCACCCAGAGGTCCAAGTaGACCTTGTACTGCCTCTGT +
Preference number: 4 (lower is better)
Translates to: HLAAGCRCGGLTKLFKTLTQRSK*TLYCLC
Trigger: ACAGAGGCAGTACAAGGTGCACTTGGACCTCTGGGT...GAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGCAAGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCACCCAGAGGTCCAAGTaGACCTTGTACTGCCTCTGT +
Preference number: 4 (lower is better)
Translates to: ERQRLSKVVSWGDELCRGTQRSK*TLYCLC
Trigger: ACAGAGGCAGTACAAGGTGCACTTGGACCTCTGGGT...GCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGTATTCTTTGTATGCTaGGCGGTCCTGGGGAGACAG +
Preference number: 4 (lower is better)
Translates to: GRDKGCQRLSVGEMSSAGVFFVC*AVLGRQ
Trigger: CTGTCTCCCCAGGACCGCGCAGCATACAAAGAATAC...CCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGGTATTCTTTGTATGCTaGGCGGTCCTGGGGAGACAG +
Preference number: 4 (lower is better)
Translates to: KVGKSGGYGTEHRERQRLVFFVC*AVLGRQ
Trigger: CTGTCTCCCCAGGACCGCGCAGCATACAAAGAATAC...CAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGCCATTTCCAGGTCTGTaGGACAGTCCGCTTCTCCGT +
Preference number: 4 (lower is better)
Translates to: KESGEVWRVRDRTQGETKPFPGL*DSPLLR
Trigger: ACGGAGAAGCGGACTGTCCCACAGACCTGGAAATGG...CTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCCATTTCCAGGTCTGTaGGACAGTCCGCTTCTCCGT +
Preference number: 4 (lower is better)
Translates to: RDKGCQRLSVGEMSSAGAPFPGL*DSPLLR
Trigger: ACGGAGAAGCGGACTGTCCCACAGACCTGGAAATGG...AGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp ACTGTTGTGTTGACCCCTCCACACGCCCAATATGGAGTCCCTTTTGTCTCTCTATTGCTCATCTCCGGGTaGAGCTTCGCGTACTTGGCC +
Preference number: 4 (lower is better)
Translates to: TVVLTPPHAQYGVPFVSLLLISG*SFAYLA
Trigger: GGCCAAGTACGCGAAGCTCCACCCGGAGATGAGCAA...TAGAGAGACAAAAGGGACTCCATATTGGGCGTGTGGAGGGGTCAACACAACAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128016.2
CDS-3UTR CCA 90 bp GGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTAGCAGCTTCCATTGCTaGCTGCATAGCACCATGCGC +
Preference number: 4 (lower is better)
Translates to: GGYGTEHRERQRLSKVVSSSFHC*LHSTMR
Trigger: GCGCATGGTGCTATGCAGCCAGCAATGGAAGCTGCT...ACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCTAGCAGCTTCCATTGCTaGCTGCATAGCACCATGCGC +
Preference number: 4 (lower is better)
Translates to: RQRLSKVVSWGDELCRGSSSFHC*LHSTMR
Trigger: GCGCATGGTGCTATGCAGCCAGCAATGGAAGCTGCT...AGAGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp GGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGAGCAGCTTCCATTGCTaGCTGCATAGCACCATGCGC +
Preference number: 4 (lower is better)
Translates to: GYGTEHRERQRLSKVVSWSSFHC*LHSTMR
Trigger: GCGCATGGTGCTATGCAGCCAGCAATGGAAGCTGCT...CCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp GGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGAGAGTTTGTAGCAGCTaGAGGGGCCCGCATCTCACT +
Preference number: 4 (lower is better)
Translates to: GYGTEHRERQRLSKVVSWRVCSS*RGPHLT
Trigger: AGTGAGATGCGGGCCCCTCCAGCTGCTACAAACTCT...CCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGAGTTTGTAGCAGCTaGAGGGGCCCGCATCTCACT +
Preference number: 4 (lower is better)
Translates to: RKKVGKSGGYGTEHRERQRVCSS*RGPHLT
Trigger: AGTGAGATGCGGGCCCCTCCAGCTGCTACAAACTCT...TTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp CTCCCCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGTTGGGCCTCGGAGCTTaGTCATGTTCTTACGTTTAT +
Preference number: 4 (lower is better)
Translates to: LPSPLSMPELQMQKRGRVLGLGA*SCSYVY
Trigger: ATAAACGTAAGAACATGACCAAGCTCCGAGGCCCAA...CACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGGGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGCTAGACTTGGGGTTTaGGCCTCGGAGCTTGGTCAT +
Preference number: 4 (lower is better)
Translates to: KESGEVWRVRDRTQGETKARLGV*ASELGH
Trigger: ATGACCAAGCTCCGAGGCCCAAACCCCAAGTCTAGC...CTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGCTAGACTTGGGGTTTaGGCCTCGGAGCTTGGTCAT +
Preference number: 4 (lower is better)
Translates to: RERQRLSKVVSWGDELCRARLGV*ASELGH
Trigger: ATGACCAAGCTCCGAGGCCCAAACCCCAAGTCTAGC...CCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR CAA 72 bp TTAGGAATCTCCATCACACAGTCCAGGCAAATGTCTTaGCTTTCAAGAGGGACTGGCAGCTGGGCTGCAGCC +
Preference number: 4 (lower is better)
Translates to: LGISITQSRQMS*LSRGTGSWAAA
Trigger: GGCTGCAGCCCAGCTGCCAGTCCCTCTTGAAAGCAAAGACATTTGCCTGGACTGTGTGATGGAGATTCCTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp CAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCAAATCTCCACCCATTTaGGCTTGCACATATCTCCTG +
Preference number: 4 (lower is better)
Translates to: QAAGVEVSPNSLRLSPTPKSPPI*ACTYLL
Trigger: CAGGAGATATGTGCAAGCTCAAATGGGTGGAGATTT...GGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGCACCATGCGCTCTGTaGTGGGCACATCCTTCATGT +
Preference number: 4 (lower is better)
Translates to: RVRDRTQGETKVVKGCQLAPCAL*WAHPSC
Trigger: ACATGAAGGATGTGCCCAGCACAGAGCGCATGGTGC...CAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGCACCATGCGCTCTGTaGTGGGCACATCCTTCATGT +
Preference number: 4 (lower is better)
Translates to: KSGGYGTEHRERQRLSKVAPCAL*WAHPSC
Trigger: ACATGAAGGATGTGCCCAGCACAGAGCGCATGGTGC...AACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGGCTGCATAGCACCATaGGCTCTGTGCTGGGCACAT +
Preference number: 4 (lower is better)
Translates to: NTGRDKGCQRLSVGEMSSGCIAP*ALCWAH
Trigger: ATGTGCCCAGCACAGAGCGCATGGTGCTATGCAGCC...AGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGAGCAGCTTCCATTaGTGGCTGCATAGCACCATG +
Preference number: 4 (lower is better)
Translates to: GTGQNTGRDKGCQRLSVGESSFH*WLHSTM
Trigger: CATGGTGCTATGCAGCCAGCAATGGAAGCTGCTCTC...CCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAGAGAGCAGCTTCCATTaGTGGCTGCATAGCACCATG +
Preference number: 4 (lower is better)
Translates to: RKKVGKSGGYGTEHRERQESSFH*WLHSTM
Trigger: CATGGTGCTATGCAGCCAGCAATGGAAGCTGCTCTC...TTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTTCTCGGAGCCACCCTTaGCACCTTCCTGTGAAGGCT +
Preference number: 4 (lower is better)
Translates to: NTGRDKGCQRLSVGEMSSSRSHP*HLPVKA
Trigger: AGCCTTCACAGGAAGGTGGCAAGGGTGGCTCCGAGA...AGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGCGTTCCTCCTGTAGCTaGCTTCGCTTCTCCTCAGAG +
Preference number: 4 (lower is better)
Translates to: RVRDRTQGETKVVKGCQLRSSCS*LRFSSE
Trigger: CTCTGAGGAGAAGCGAAGGCAGCTACAGGAGGAACG...CAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTCCGATGACACTCTGCTaGCAGATCTCCTCAGCCCTC +
Preference number: 4 (lower is better)
Translates to: NTGRDKGCQRLSVGEMSSPMTLC*QISSAL
Trigger: GAGGGCTGAGGAGATCTGGCAGCAGAGTGTCATCGG...AGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTACCCAGAGGTCCAAGTaGACCTTGTACTGCCTCTGT +
Preference number: 4 (lower is better)
Translates to: RDKGCQRLSVGEMSSAGATQRSK*TLYCLC
Trigger: ACAGAGGCAGTACAAGGTGCACTTGGACCTCTGGGT...AGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTGTATTCTTTGTATGCTaGGCGGTCCTGGGGAGACAG +
Preference number: 4 (lower is better)
Translates to: RDKGCQRLSVGEMSSAGAVFFVC*AVLGRQ
Trigger: CTGTCTCCCCAGGACCGCGCAGCATACAAAGAATAC...AGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAGTATTCTTTGTATGCTaGGCGGTCCTGGGGAGACAG +
Preference number: 4 (lower is better)
Translates to: RKKVGKSGGYGTEHRERQVFFVC*AVLGRQ
Trigger: CTGTCTCCCCAGGACCGCGCAGCATACAAAGAATAC...TTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCAAACTCCGCTTTCATCTTCACTaGTGGACTCAGAAGAGTCCC +
Preference number: 4 (lower is better)
Translates to: AGVEVSPNSLRLSPTPKLRFHLH*WTQKSP
Trigger: GGGACTCTTCTGAGTCCAGCAGTGAAGATGAAAGCG...GAGTTTGGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTCCATTTCCAGGTCTGTaGGACAGTCCGCTTCTCCGT +
Preference number: 4 (lower is better)
Translates to: KSGGYGTEHRERQRLSKVPFPGL*DSPLLR
Trigger: ACGGAGAAGCGGACTGTCCCACAGACCTGGAAATGG...AACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp CACACACACACACACACACACACACACACACACACACACACACTCTTCTCTCTCGTCAGCATATCTTCCTaGGACCAGCGGTCTTGGCCT +
Preference number: 4 (lower is better)
Translates to: HTHTHTHTHTHTHTLFSLVSISS*DQRSWP
Trigger: AGGCCAAGACCGCTGGTCCCAGGAAGATATGCTGAC...GAGAGAGAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp TCCAGGGTGTTCAAACAAGGAGATGGAGTTCTCTGCAAGCCCTCTCAGGAACTTGTCAGCATATCTTCCTaGGACCAGCGGTCTTGGCCT +
Preference number: 4 (lower is better)
Translates to: SRVFKQGDGVLCKPSQELVSISS*DQRSWP
Trigger: AGGCCAAGACCGCTGGTCCCAGGAAGATATGCTGAC...AAGTTCCTGAGAGGGCTTGCAGAGAACTCCATCTCCTTGTTTGAACACCCTGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp CACCTTGCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCGGAGCTGTCGTTGGATaGGAGGTTGTTCTTCATGCA +
Preference number: 4 (lower is better)
Translates to: HLAAGCRCGGLTKLFKTLGAVVG*EVVLHA
Trigger: TGCATGAAGAACAACCTCCCATCCAACGACAGCTCC...GAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGCAAGGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp TGTGTTGACCCCTCCACACGCCCAATATGGAGTCCCTTTTGTCTCTCTAAGGCCGGAGCTGTCGTTGGATaGGAGGTTGTTCTTCATGCA +
Preference number: 4 (lower is better)
Translates to: CVDPSTRPIWSPFCLSKAGAVVG*EVVLHA
Trigger: TGCATGAAGAACAACCTCCCATCCAACGACAGCTCC...GGCCTTAGAGAGACAAAAGGGACTCCATATTGGGCGTGTGGAGGGGTCAACACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128016.2
CDS-3UTR CCA 90 bp AGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCAAACTCCCGGAGCTGTCGTTGGATaGGAGGTTGTTCTTCATGCA +
Preference number: 4 (lower is better)
Translates to: RCGGLTKLFKTLSHPQTPGAVVG*EVVLHA
Trigger: TGCATGAAGAACAACCTCCCATCCAACGACAGCTCC...GGGAGTTTGGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCACTTGGAGCTGTCGTTaGATGGGAGGTTGTTCTTCA +
Preference number: 4 (lower is better)
Translates to: SGEVWRVRDRTQGETKVVTWSCR*MGGCSS
Trigger: TGAAGAACAACCTCCCATCCAACGACAGCTCCAAGT...GACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTAGCAGCTTCCATTGCTaGCTGCATAGCACCATGCGC +
Preference number: 4 (lower is better)
Translates to: KSGGYGTEHRERQRLSKVSSFHC*LHSTMR
Trigger: GCGCATGGTGCTATGCAGCCAGCAATGGAAGCTGCT...AACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp TCCAGGGTGTTCAAACAAGGAGATGGAGTTCTCTGCAAGCCCTCTCAGGAACTTAGCAGCTTCCATTGCTaGCTGCATAGCACCATGCGC +
Preference number: 4 (lower is better)
Translates to: SRVFKQGDGVLCKPSQELSSFHC*LHSTMR
Trigger: GCGCATGGTGCTATGCAGCCAGCAATGGAAGCTGCT...AAGTTCCTGAGAGGGCTTGCAGAGAACTCCATCTCCTTGTTTGAACACCCTGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp CCCCCGAACATCCACCTTGCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCCTCTCATATCGTTTTTaGTCTTCTGCTGCCTTCTTA +
Preference number: 4 (lower is better)
Translates to: PPNIHLAAGCRCGGLTKLLSYRF*SSAAFL
Trigger: TAAGAAGGCAGCAGAAGACCAAAAACGATATGAGAG...GAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGCAAGGTGGATGTTCGGGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp CTCCCCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGCTTGCACATATCTCCTaGAAAATCCTTAAACGCAAC +
Preference number: 4 (lower is better)
Translates to: LPSPLSMPELQMQKRGRVLAHIS*KILKRN
Trigger: GTTGCGTTTAAGGATTTTTCAGGAGATATGTGCAAG...CACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGGGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp ACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCCAGTTCAAATCCGGGTGTTTCTTaGGCTTTTTGCCTTTGTAAG +
Preference number: 4 (lower is better)
Translates to: TGPLPAFLKAAPLSPSSSNPGVS*AFCLCK
Trigger: CTTACAAAGGCAAAAAGCTCAAGAAACACCCGGATT...TGAACTGGAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp GCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACAGCGGAAGTAAGGGGTaGGAGGTTTCTTTGGAAAAT +
Preference number: 4 (lower is better)
Translates to: AAGCRCGGLTKLFKTLSHSGSKG*EVSLEN
Trigger: ATTTTCCAAAGAAACCTCTCACCCCTTACTTCCGCT...GTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp CTGTATCGCTCGCTCACGTGTGTGCACATCACACACACAGCCTCACACACACACAGCGGAAGTAAGGGGTaGGAGGTTTCTTTGGAAAAT +
Preference number: 4 (lower is better)
Translates to: LYRSLTCVHITHTASHTHSGSKG*EVSLEN
Trigger: ATTTTCCAAAGAAACCTCTCACCCCTTACTTCCGCT...GTGTGTGTGTGAGGCTGTGTGTGTGATGTGCACACACGTGAGCGAGCGATACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp CCCCAAACTCCCCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGTTTTCCCAATCCATGTaGGACTCTGTGGTTTTGAAC +
Preference number: 4 (lower is better)
Translates to: PQTPQSIVHAGTANAEEGFSQSM*DSVVLN
Trigger: GTTCAAAACCACAGAGTCGCACATGGATTGGGAAAA...CCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGGGGAGTTTGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp ACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCCAGTTCATTTTCCCAATCCATGTaGGACTCTGTGGTTTTGAAC +
Preference number: 4 (lower is better)
Translates to: TGPLPAFLKAAPLSPSSSFSQSM*DSVVLN
Trigger: GTTCAAAACCACAGAGTCGCACATGGATTGGGAAAA...TGAACTGGAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGCCGGACTGGTGGTTTaGTTCTTATTGATGTTCAGC +
Preference number: 4 (lower is better)
Translates to: GKSGGYGTEHRERQRLSKAGLVV*FLLMFS
Trigger: GCTGAACATCAATAAGAAGCAAACCACCAGTCCGGC...CTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCGCCGGACTGGTGGTTTaGTTCTTATTGATGTTCAGC +
Preference number: 4 (lower is better)
Translates to: ERQRLSKVVSWGDELCRGAGLVV*FLLMFS
Trigger: GCTGAACATCAATAAGAAGCAAACCACCAGTCCGGC...GCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp CTCCCCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGTCGTTTTTGGTCTTCTaGTGCCTTCTTAATCCACAT +
Preference number: 4 (lower is better)
Translates to: LPSPLSMPELQMQKRGRVSFLVF*CLLNPH
Trigger: ATGTGGATTAAGAAGGCAGCAGAAGACCAAAAACGA...CACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGGGGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAACGCTTTCATCTTCACTaGTGGACTCAGAAGAGTCCC +
Preference number: 4 (lower is better)
Translates to: RKKVGKSGGYGTEHRERQRFHLH*WTQKSP
Trigger: GGGACTCTTCTGAGTCCAGCAGTGAAGATGAAAGCG...TTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCGCTTTCATCTTCACTaGTGGACTCAGAAGAGTCCC +
Preference number: 4 (lower is better)
Translates to: RDKGCQRLSVGEMSSAGARFHLH*WTQKSP
Trigger: GGGACTCTTCTGAGTCCAGCAGTGAAGATGAAAGCG...AGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGTCAGCATATCTTCCTaGGACCAGCGGTCTTGGCCT +
Preference number: 4 (lower is better)
Translates to: NTGRDKGCQRLSVGEMSSVSISS*DQRSWP
Trigger: AGGCCAAGACCGCTGGTCCCAGGAAGATATGCTGAC...AGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp GAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTGGAGCTGTCGTTGGATaGGAGGTTGTTCTTCATGCA +
Preference number: 4 (lower is better)
Translates to: EVWRVRDRTQGETKVVKGGAVVG*EVVLHA
Trigger: TGCATGAAGAACAACCTCCCATCCAACGACAGCTCC...ACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGGGAGCTGTCGTTGGATaGGAGGTTGTTCTTCATGCA +
Preference number: 4 (lower is better)
Translates to: RKKESGEVWRVRDRTQGEGAVVG*EVVLHA
Trigger: TGCATGAAGAACAACCTCCCATCCAACGACAGCTCC...CTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTGGAGCTGTCGTTGGATaGGAGGTTGTTCTTCATGCA +
Preference number: 4 (lower is better)
Translates to: RDKGCQRLSVGEMSSAGAGAVVG*EVVLHA
Trigger: TGCATGAAGAACAACCTCCCATCCAACGACAGCTCC...AGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp GGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTGGAGCTGTCGTTGGATaGGAGGTTGTTCTTCATGCA +
Preference number: 4 (lower is better)
Translates to: GGYGTEHRERQRLSKVVSGAVVG*EVVLHA
Trigger: TGCATGAAGAACAACCTCCCATCCAACGACAGCTCC...ACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTACTTGGAGCTGTCGTTaGATGGGAGGTTGTTCTTCA +
Preference number: 4 (lower is better)
Translates to: KWGSLEGTGQNTGRDKGCTWSCR*MGGCSS
Trigger: TGAAGAACAACCTCCCATCCAACGACAGCTCCAAGT...ACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGACTTGGAGCTGTCGTTaGATGGGAGGTTGTTCTTCA +
Preference number: 4 (lower is better)
Translates to: KVGKSGGYGTEHRERQRLTWSCR*MGGCSS
Trigger: TGAAGAACAACCTCCCATCCAACGACAGCTCCAAGT...CAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTACTTGGAGCTGTCGTTaGATGGGAGGTTGTTCTTCA +
Preference number: 4 (lower is better)
Translates to: RKWGSLEGTGQNTGRDKGTWSCR*MGGCSS
Trigger: TGAAGAACAACCTCCCATCCAACGACAGCTCCAAGT...ACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTAGAGTTTGTAGCAGCTaGAGGGGCCCGCATCTCACT +
Preference number: 4 (lower is better)
Translates to: NTGRDKGCQRLSVGEMSSRVCSS*RGPHLT
Trigger: AGTGAGATGCGGGCCCCTCCAGCTGCTACAAACTCT...AGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCTAGACTTGGGGTTTaGGCCTCGGAGCTTGGTCAT +
Preference number: 4 (lower is better)
Translates to: NTGRDKGCQRLSVGEMSSARLGV*ASELGH
Trigger: ATGACCAAGCTCCGAGGCCCAAACCCCAAGTCTAGC...AGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp GGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGAAATCTCCACCCATTTaGGCTTGCACATATCTCCTG +
Preference number: 4 (lower is better)
Translates to: GRDKGCQRLSVGEMSSAGKSPPI*ACTYLL
Trigger: CAGGAGATATGTGCAAGCTCAAATGGGTGGAGATTT...CCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp AGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAATCCGGGTGTTTCTTaGGCTTTTTGCCTTTGTAAG +
Preference number: 4 (lower is better)
Translates to: SGEVWRVRDRTQGETKVVNPGVS*AFCLCK
Trigger: CTTACAAAGGCAAAAAGCTCAAGAAACACCCGGATT...GACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp AAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGAGCGGAAGTAAGGGGTaGGAGGTTTCTTTGGAAAAT +
Preference number: 4 (lower is better)
Translates to: KVGKSGGYGTEHRERQRLSGSKG*EVSLEN
Trigger: ATTTTCCAAAGAAACCTCTCACCCCTTACTTCCGCT...CAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp AAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTAGCGGAAGTAAGGGGTaGGAGGTTTCTTTGGAAAAT +
Preference number: 4 (lower is better)
Translates to: KWGSLEGTGQNTGRDKGCSGSKG*EVSLEN
Trigger: ATTTTCCAAAGAAACCTCTCACCCCTTACTTCCGCT...ACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp CAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCTCCCTCTGGAAGTCCTaGATATATTTCATCTTCTTC +
Preference number: 4 (lower is better)
Translates to: QAAGVEVSPNSLRLSPTPSLWKS*IYFIFF
Trigger: GAAGAAGATGAAATATATTCAGGACTTCCAGAGGGA...GGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp CAGTCCAGGCAAATGTCTTTGCTTTCAAGAGGGACTGGCAGCTGGGCTGCAGCCTCCCTCTGGAAGTCCTaGATATATTTCATCTTCTTC +
Preference number: 4 (lower is better)
Translates to: QSRQMSLLSRGTGSWAAASLWKS*IYFIFF
Trigger: GAAGAAGATGAAATATATTCAGGACTTCCAGAGGGA...GGCTGCAGCCCAGCTGCCAGTCCCTCTTGAAAGCAAAGACATTTGCCTGGACTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTGGAGGTTGTTCTTCATaGATTCCAGCAGAGTCAGCA +
Preference number: 4 (lower is better)
Translates to: RDKGCQRLSVGEMSSAGAGGCSS*IPAESA
Trigger: TGCTGACTCTGCTGGAATGCATGAAGAACAACCTCC...AGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGGAGGTTGTTCTTCATaGATTCCAGCAGAGTCAGCA +
Preference number: 4 (lower is better)
Translates to: GTGQNTGRDKGCQRLSVGGGCSS*IPAESA
Trigger: TGCTGACTCTGCTGGAATGCATGAAGAACAACCTCC...CCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp CTTTGCTTTCAAGAGGGACTGGCAGCTGGGCTGCAGCCTACTTTCTGTGGAGAGTTTTCCCAATCCATGTaGGACTCTGTGGTTTTGAAC +
Preference number: 4 (lower is better)
Translates to: LCFQEGLAAGLQPTFCGEFSQSM*DSVVLN
Trigger: GTTCAAAACCACAGAGTCGCACATGGATTGGGAAAA...CTCTCCACAGAAAGTAGGCTGCAGCCCAGCTGCCAGTCCCTCTTGAAAGCAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGAGAGCAGCTTCCATTaGTGGCTGCATAGCACCATG +
Preference number: 4 (lower is better)
Translates to: NTGRDKGCQRLSVGEMSSESSFH*WLHSTM
Trigger: CATGGTGCTATGCAGCCAGCAATGGAAGCTGCTCTC...AGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTGCCGGACTGGTGGTTTaGTTCTTATTGATGTTCAGC +
Preference number: 4 (lower is better)
Translates to: EVWRVRDRTQGETKVVKGAGLVV*FLLMFS
Trigger: GCTGAACATCAATAAGAAGCAAACCACCAGTCCGGC...ACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGCCGGACTGGTGGTTTaGTTCTTATTGATGTTCAGC +
Preference number: 4 (lower is better)
Translates to: GTGQNTGRDKGCQRLSVGAGLVV*FLLMFS
Trigger: GCTGAACATCAATAAGAAGCAAACCACCAGTCCGGC...CCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp ACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCCAGTTCATCGTTTTTGGTCTTCTaGTGCCTTCTTAATCCACAT +
Preference number: 4 (lower is better)
Translates to: TGPLPAFLKAAPLSPSSSSFLVF*CLLNPH
Trigger: ATGTGGATTAAGAAGGCAGCAGAAGACCAAAAACGA...TGAACTGGAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GAAAGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGACGCTTTCATCTTCACTaGTGGACTCAGAAGAGTCCC +
Preference number: 4 (lower is better)
Translates to: ERKKESGEVWRVRDRTQGRFHLH*WTQKSP
Trigger: GGGACTCTTCTGAGTCCAGCAGTGAAGATGAAAGCG...TCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAACTTGGAGCTGTCGTTaGATGGGAGGTTGTTCTTCA +
Preference number: 4 (lower is better)
Translates to: RKKVGKSGGYGTEHRERQTWSCR*MGGCSS
Trigger: TGAAGAACAACCTCCCATCCAACGACAGCTCCAAGT...TTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp CAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCCTCTCATATCGTTTTTaGTCTTCTGCTGCCTTCTTA +
Preference number: 4 (lower is better)
Translates to: QAAGVEVSPNSLRLSPTPLSYRF*SSAAFL
Trigger: TAAGAAGGCAGCAGAAGACCAAAAACGATATGAGAG...GGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTG
50% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTTGGGCCTCGGAGCTTaGTCATGTTCTTACGTTTAT +
Preference number: 4 (lower is better)
Translates to: RKWGSLEGTGQNTGRDKGLGLGA*SCSYVY
Trigger: ATAAACGTAAGAACATGACCAAGCTCCGAGGCCCAA...ACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp GAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTAAATCTCCACCCATTTaGGCTTGCACATATCTCCTG +
Preference number: 4 (lower is better)
Translates to: EVWRVRDRTQGETKVVKGKSPPI*ACTYLL
Trigger: CAGGAGATATGTGCAAGCTCAAATGGGTGGAGATTT...ACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp CAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCTCTCAATCCGGGTGTTTCTTaGGCTTTTTGCCTTTGTAAG +
Preference number: 4 (lower is better)
Translates to: QRLSKVVSWGDELCRGSLNPGVS*AFCLCK
Trigger: CTTACAAAGGCAAAAAGCTCAAGAAACACCCGGATT...GAGAGAGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp AGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTAATCCGGGTGTTTCTTaGGCTTTTTGCCTTTGTAAG +
Preference number: 4 (lower is better)
Translates to: RKWGSLEGTGQNTGRDKGNPGVS*AFCLCK
Trigger: CTTACAAAGGCAAAAAGCTCAAGAAACACCCGGATT...ACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp GGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGAGCGGAAGTAAGGGGTaGGAGGTTTCTTTGGAAAAT +
Preference number: 4 (lower is better)
Translates to: GTGQNTGRDKGCQRLSVGSGSKG*EVSLEN
Trigger: ATTTTCCAAAGAAACCTCTCACCCCTTACTTCCGCT...CCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp AGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTAGCGGAAGTAAGGGGTaGGAGGTTTCTTTGGAAAAT +
Preference number: 4 (lower is better)
Translates to: RDKGCQRLSVGEMSSAGASGSKG*EVSLEN
Trigger: ATTTTCCAAAGAAACCTCTCACCCCTTACTTCCGCT...AGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp CTGTATCGCTCGCTCACGTGTGTGCACATCACACACACAGCCTCACACACACACTCCCTCTGGAAGTCCTaGATATATTTCATCTTCTTC +
Preference number: 4 (lower is better)
Translates to: LYRSLTCVHITHTASHTHSLWKS*IYFIFF
Trigger: GAAGAAGATGAAATATATTCAGGACTTCCAGAGGGA...GTGTGTGTGTGAGGCTGTGTGTGTGATGTGCACACACGTGAGCGAGCGATACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AAGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGGAGGTTGTTCTTCATaGATTCCAGCAGAGTCAGCA +
Preference number: 4 (lower is better)
Translates to: KKERKWGSLEGTGQNTGRGGCSS*IPAESA
Trigger: TGCTGACTCTGCTGGAATGCATGAAGAACAACCTCC...TCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCTCTCCTTTTCCCAATCCATGTaGGACTCTGTGGTTTTGAAC +
Preference number: 4 (lower is better)
Translates to: KGCQRLSVGEMSSAGALSFSQSM*DSVVLN
Trigger: GTTCAAAACCACAGAGTCGCACATGGATTGGGAAAA...GGAGAGAGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGCCGGACTGGTGGTTTaGTTCTTATTGATGTTCAGC +
Preference number: 4 (lower is better)
Translates to: RVRDRTQGETKVVKGCQLAGLVV*FLLMFS
Trigger: GCTGAACATCAATAAGAAGCAAACCACCAGTCCGGC...CAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGCCGGACTGGTGGTTTaGTTCTTATTGATGTTCAGC +
Preference number: 4 (lower is better)
Translates to: KSGGYGTEHRERQRLSKVAGLVV*FLLMFS
Trigger: GCTGAACATCAATAAGAAGCAAACCACCAGTCCGGC...AACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AAAAGAAAGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACACGTTCCTCCTGTAGCTaGCTTCGCTTCTCCTCAGAG +
Preference number: 4 (lower is better)
Translates to: KRKKERKWGSLEGTGQNTRSSCS*LRFSSE
Trigger: CTCTGAGGAGAAGCGAAGGCAGCTACAGGAGGAACG...TGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCTTTCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AAAAGAAAGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACATCTCCGATGACACTCTaGTGCCAGATCTCCTCAGCC +
Preference number: 4 (lower is better)
Translates to: KRKKERKWGSLEGTGQNTSPMTL*CQISSA
Trigger: GGCTGAGGAGATCTGGCAGCAGAGTGTCATCGGAGA...TGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCTTTCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCAATCGTTTTTGGTCTTCTaGTGCCTTCTTAATCCACAT +
Preference number: 4 (lower is better)
Translates to: GCRCGGLTKLFKTLSHPQSFLVF*CLLNPH
Trigger: ATGTGGATTAAGAAGGCAGCAGAAGACCAAAAACGA...TTGGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AAGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAACTTGGAGCTGTCGTTaGATGGGAGGTTGTTCTTCA +
Preference number: 4 (lower is better)
Translates to: KKERKWGSLEGTGQNTGRTWSCR*MGGCSS
Trigger: TGAAGAACAACCTCCCATCCAACGACAGCTCCAAGT...TCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp ACTGTTGTGTTGACCCCTCCACACGCCCAATATGGAGTCCCTTTTGTCTCTCTAACTTGGAGCTGTCGTTaGATGGGAGGTTGTTCTTCA +
Preference number: 4 (lower is better)
Translates to: TVVLTPPHAQYGVPFVSLTWSCR*MGGCSS
Trigger: TGAAGAACAACCTCCCATCCAACGACAGCTCCAAGT...TAGAGAGACAAAAGGGACTCCATATTGGGCGTGTGGAGGGGTCAACACAACAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128016.2
CDS-3UTR CCA 90 bp AAAAGAAAGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAAGCAGCTTCCATTGCTaGCTGCATAGCACCATGCGC +
Preference number: 4 (lower is better)
Translates to: KRKKERKWGSLEGTGQNTSSFHC*LHSTMR
Trigger: GCGCATGGTGCTATGCAGCCAGCAATGGAAGCTGCT...TGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCTTTCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCCTCTCATATCGTTTTTaGTCTTCTGCTGCCTTCTTA +
Preference number: 4 (lower is better)
Translates to: SGEVWRVRDRTQGETKVVLSYRF*SSAAFL
Trigger: TAAGAAGGCAGCAGAAGACCAAAAACGATATGAGAG...GACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGTTGGGCCTCGGAGCTTaGTCATGTTCTTACGTTTAT +
Preference number: 4 (lower is better)
Translates to: KESGEVWRVRDRTQGETKLGLGA*SCSYVY
Trigger: ATAAACGTAAGAACATGACCAAGCTCCGAGGCCCAA...CTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp AGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTCTTGCACATATCTCCTaGAAAATCCTTAAACGCAAC +
Preference number: 4 (lower is better)
Translates to: RKWGSLEGTGQNTGRDKGLAHIS*KILKRN
Trigger: GTTGCGTTTAAGGATTTTTCAGGAGATATGTGCAAG...ACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp GCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCAAACTCCTTGCACATATCTCCTaGAAAATCCTTAAACGCAAC +
Preference number: 4 (lower is better)
Translates to: AGVEVSPNSLRLSPTPKLLAHIS*KILKRN
Trigger: GTTGCGTTTAAGGATTTTTCAGGAGATATGTGCAAG...GAGTTTGGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp AAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTAAATCTCCACCCATTTaGGCTTGCACATATCTCCTG +
Preference number: 4 (lower is better)
Translates to: KSGGYGTEHRERQRLSKVKSPPI*ACTYLL
Trigger: CAGGAGATATGTGCAAGCTCAAATGGGTGGAGATTT...AACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp GAAAGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAAAATCTCCACCCATTTaGGCTTGCACATATCTCCTG +
Preference number: 4 (lower is better)
Translates to: ERKKESGEVWRVRDRTQGKSPPI*ACTYLL
Trigger: CAGGAGATATGTGCAAGCTCAAATGGGTGGAGATTT...TCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp ACTGTTGTGTTGACCCCTCCACACGCCCAATATGGAGTCCCTTTTGTCTCTCTAAAATCTCCACCCATTTaGGCTTGCACATATCTCCTG +
Preference number: 4 (lower is better)
Translates to: TVVLTPPHAQYGVPFVSLKSPPI*ACTYLL
Trigger: CAGGAGATATGTGCAAGCTCAAATGGGTGGAGATTT...TAGAGAGACAAAAGGGACTCCATATTGGGCGTGTGGAGGGGTCAACACAACAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000128016.2
CDS-3UTR TCA 90 bp AAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGAATCCGGGTGTTTCTTaGGCTTTTTGCCTTTGTAAG +
Preference number: 4 (lower is better)
Translates to: KESGEVWRVRDRTQGETKNPGVS*AFCLCK
Trigger: CTTACAAAGGCAAAAAGCTCAAGAAACACCCGGATT...CTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp AGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAATCCGGGTGTTTCTTaGGCTTTTTGCCTTTGTAAG +
Preference number: 4 (lower is better)
Translates to: RKKVGKSGGYGTEHRERQNPGVS*AFCLCK
Trigger: CTTACAAAGGCAAAAAGCTCAAGAAACACCCGGATT...TTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp CCTCCAAAACAACTACACTGTTGTGTTGACCCCTCCACACGCCCAATATGGAGTAGCGGAAGTAAGGGGTaGGAGGTTTCTTTGGAAAAT +
Preference number: 4 (lower is better)
Translates to: PPKQLHCCVDPSTRPIWSSGSKG*EVSLEN
Trigger: ATTTTCCAAAGAAACCTCTCACCCCTTACTTCCGCT...ACTCCATATTGGGCGTGTGGAGGGGTCAACACAACAGTGTAGTTGTTTTGGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000128016.2
CDS-3UTR TCA 90 bp AAGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAAGCGGAAGTAAGGGGTaGGAGGTTTCTTTGGAAAAT +
Preference number: 4 (lower is better)
Translates to: KKERKWGSLEGTGQNTGRSGSKG*EVSLEN
Trigger: ATTTTCCAAAGAAACCTCTCACCCCTTACTTCCGCT...TCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp CTTGCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCTCCCTCTGGAAGTCCTaGATATATTTCATCTTCTTC +
Preference number: 4 (lower is better)
Translates to: LAAGCRCGGLTKLFKTLSSLWKS*IYFIFF
Trigger: GAAGAAGATGAAATATATTCAGGACTTCCAGAGGGA...GGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGCAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTTTTCCCAATCCATGTaGGACTCTGTGGTTTTGAAC +
Preference number: 4 (lower is better)
Translates to: GGYGTEHRERQRLSKVVSFSQSM*DSVVLN
Trigger: GTTCAAAACCACAGAGTCGCACATGGATTGGGAAAA...ACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GTTGACCCCTCCACACGCCCAATATGGAGTCCCTTTTGTCTCTCTAAGGCCTATTTTTCCCAATCCATGTaGGACTCTGTGGTTTTGAAC +
Preference number: 4 (lower is better)
Translates to: VDPSTRPIWSPFCLSKAYFSQSM*DSVVLN
Trigger: GTTCAAAACCACAGAGTCGCACATGGATTGGGAAAA...ATAGGCCTTAGAGAGACAAAAGGGACTCCATATTGGGCGTGTGGAGGGGTCAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000128016.2
CDS-3UTR GCA 90 bp GAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAATTTTCCCAATCCATGTaGGACTCTGTGGTTTTGAAC +
Preference number: 4 (lower is better)
Translates to: ERKWGSLEGTGQNTGRDKFSQSM*DSVVLN
Trigger: GTTCAAAACCACAGAGTCGCACATGGATTGGGAAAA...TTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTTTTTGGTCTTCTGCTaGCTTCTTAATCCACATCAG +
Preference number: 4 (lower is better)
Translates to: RKWGSLEGTGQNTGRDKGFLVFC*LLNPHQ
Trigger: CTGATGTGGATTAAGAAGGCAGCAGAAGACCAAAAA...ACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCT
48% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGTTTTTGGTCTTCTGCTaGCTTCTTAATCCACATCAG +
Preference number: 4 (lower is better)
Translates to: GKSGGYGTEHRERQRLSKFLVFC*LLNPHQ
Trigger: CTGATGTGGATTAAGAAGGCAGCAGAAGACCAAAAA...CTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCTCTCCTTTTTGGTCTTCTGCTaGCTTCTTAATCCACATCAG +
Preference number: 4 (lower is better)
Translates to: KGCQRLSVGEMSSAGALSFLVFC*LLNPHQ
Trigger: CTGATGTGGATTAAGAAGGCAGCAGAAGACCAAAAA...GGAGAGAGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTTTTGGTCTTCTGCTaGCTTCTTAATCCACATCAG +
Preference number: 4 (lower is better)
Translates to: KKVGKSGGYGTEHRERQRFLVFC*LLNPHQ
Trigger: CTGATGTGGATTAAGAAGGCAGCAGAAGACCAAAAA...CCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp TCTTTGCTTTCAAGAGGGACTGGCAGCTGGGCTGCAGCCTACTTTCTGTGGAGATTTTTGGTCTTCTGCTaGCTTCTTAATCCACATCAG +
Preference number: 4 (lower is better)
Translates to: SLLSRGTGSWAAAYFLWRFLVFC*LLNPHQ
Trigger: CTGATGTGGATTAAGAAGGCAGCAGAAGACCAAAAA...TCTCCACAGAAAGTAGGCTGCAGCCCAGCTGCCAGTCCCTCTTGAAAGCAAAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCTCTCCTCGTTTTTGGTCTTCTaGTGCCTTCTTAATCCACAT +
Preference number: 4 (lower is better)
Translates to: KGCQRLSVGEMSSAGALSSFLVF*CLLNPH
Trigger: ATGTGGATTAAGAAGGCAGCAGAAGACCAAAAACGA...GGAGAGAGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp CAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCTCTCTCGTTTTTGGTCTTCTaGTGCCTTCTTAATCCACAT +
Preference number: 4 (lower is better)
Translates to: QRLSKVVSWGDELCRGSLSFLVF*CLLNPH
Trigger: ATGTGGATTAAGAAGGCAGCAGAAGACCAAAAACGA...GAGAGAGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCTCTCATATCGTTTTTaGTCTTCTGCTGCCTTCTTA +
Preference number: 4 (lower is better)
Translates to: KWGSLEGTGQNTGRDKGCLSYRF*SSAAFL
Trigger: TAAGAAGGCAGCAGAAGACCAAAAACGATATGAGAG...ACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp GAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCCTCTCATATCGTTTTTaGTCTTCTGCTGCCTTCTTA +
Preference number: 4 (lower is better)
Translates to: ERQRLSKVVSWGDELCRGLSYRF*SSAAFL
Trigger: TAAGAAGGCAGCAGAAGACCAAAAACGATATGAGAG...GCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTTTGGGCCTCGGAGCTTaGTCATGTTCTTACGTTTAT +
Preference number: 4 (lower is better)
Translates to: KSGGYGTEHRERQRLSKVLGLGA*SCSYVY
Trigger: ATAAACGTAAGAACATGACCAAGCTCCGAGGCCCAA...AACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGTTGGGCCTCGGAGCTTaGTCATGTTCTTACGTTTAT +
Preference number: 4 (lower is better)
Translates to: RVRDRTQGETKVVKGCQLLGLGA*SCSYVY
Trigger: ATAAACGTAAGAACATGACCAAGCTCCGAGGCCCAA...CAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp GAAAGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGATTGGGCCTCGGAGCTTaGTCATGTTCTTACGTTTAT +
Preference number: 4 (lower is better)
Translates to: ERKKESGEVWRVRDRTQGLGLGA*SCSYVY
Trigger: ATAAACGTAAGAACATGACCAAGCTCCGAGGCCCAA...TCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp AGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGCTTGCACATATCTCCTaGAAAATCCTTAAACGCAAC +
Preference number: 4 (lower is better)
Translates to: RKKESGEVWRVRDRTQGELAHIS*KILKRN
Trigger: GTTGCGTTTAAGGATTTTTCAGGAGATATGTGCAAG...CTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp GGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTCTTGCACATATCTCCTaGAAAATCCTTAAACGCAAC +
Preference number: 4 (lower is better)
Translates to: GGYGTEHRERQRLSKVVSLAHIS*KILKRN
Trigger: GTTGCGTTTAAGGATTTTTCAGGAGATATGTGCAAG...ACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp GAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAACTTGCACATATCTCCTaGAAAATCCTTAAACGCAAC +
Preference number: 4 (lower is better)
Translates to: ERKWGSLEGTGQNTGRDKLAHIS*KILKRN
Trigger: GTTGCGTTTAAGGATTTTTCAGGAGATATGTGCAAG...TTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp ACTGTTGTGTTGACCCCTCCACACGCCCAATATGGAGTCCCTTTTGTCTCTCTAAATCCGGGTGTTTCTTaGGCTTTTTGCCTTTGTAAG +
Preference number: 4 (lower is better)
Translates to: TVVLTPPHAQYGVPFVSLNPGVS*AFCLCK
Trigger: CTTACAAAGGCAAAAAGCTCAAGAAACACCCGGATT...TAGAGAGACAAAAGGGACTCCATATTGGGCGTGTGGAGGGGTCAACACAACAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000128016.2
CDS-3UTR TCA 90 bp AAGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAAATCCGGGTGTTTCTTaGGCTTTTTGCCTTTGTAAG +
Preference number: 4 (lower is better)
Translates to: KKERKWGSLEGTGQNTGRNPGVS*AFCLCK
Trigger: CTTACAAAGGCAAAAAGCTCAAGAAACACCCGGATT...TCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp AAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGTCCCTCTGGAAGTCCTaGATATATTTCATCTTCTTC +
Preference number: 4 (lower is better)
Translates to: KESGEVWRVRDRTQGETKSLWKS*IYFIFF
Trigger: GAAGAAGATGAAATATATTCAGGACTTCCAGAGGGA...CTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp AGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCTTCCCTCTGGAAGTCCTaGATATATTTCATCTTCTTC +
Preference number: 4 (lower is better)
Translates to: RQRLSKVVSWGDELCRGSSLWKS*IYFIFF
Trigger: GAAGAAGATGAAATATATTCAGGACTTCCAGAGGGA...AGAGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp AGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAATCCCTCTGGAAGTCCTaGATATATTTCATCTTCTTC +
Preference number: 4 (lower is better)
Translates to: RKKVGKSGGYGTEHRERQSLWKS*IYFIFF
Trigger: GAAGAAGATGAAATATATTCAGGACTTCCAGAGGGA...TTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp CCAACATGTCCCACCCCCACAGCCCTACCTCTAAGAATTTTCCAATACTTGCAGTTTTCCCAATCCATGTaGGACTCTGTGGTTTTGAAC +
Preference number: 4 (lower is better)
Translates to: PTCPTPTALPLRIFQYLQFSQSM*DSVVLN
Trigger: GTTCAAAACCACAGAGTCGCACATGGATTGGGAAAA...CTGCAAGTATTGGAAAATTCTTAGAGGTAGGGCTGTGGGGGTGGGACATGTTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGTTTTTGGTCTTCTGCTaGCTTCTTAATCCACATCAG +
Preference number: 4 (lower is better)
Translates to: GTGQNTGRDKGCQRLSVGFLVFC*LLNPHQ
Trigger: CTGATGTGGATTAAGAAGGCAGCAGAAGACCAAAAA...CCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp GGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGTCGTTTTTGGTCTTCTaGTGCCTTCTTAATCCACAT +
Preference number: 4 (lower is better)
Translates to: GYGTEHRERQRLSKVVSWSFLVF*CLLNPH
Trigger: ATGTGGATTAAGAAGGCAGCAGAAGACCAAAAACGA...CCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTTCGTTTTTGGTCTTCTaGTGCCTTCTTAATCCACAT +
Preference number: 4 (lower is better)
Translates to: RDKGCQRLSVGEMSSAGASFLVF*CLLNPH
Trigger: ATGTGGATTAAGAAGGCAGCAGAAGACCAAAAACGA...AGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AAAAGAAAGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACACGCTTTCATCTTCACTaGTGGACTCAGAAGAGTCCC +
Preference number: 4 (lower is better)
Translates to: KRKKERKWGSLEGTGQNTRFHLH*WTQKSP
Trigger: GGGACTCTTCTGAGTCCAGCAGTGAAGATGAAAGCG...TGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCTTTCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGCTCTCATATCGTTTTTaGTCTTCTGCTGCCTTCTTA +
Preference number: 4 (lower is better)
Translates to: RERQRLSKVVSWGDELCRLSYRF*SSAAFL
Trigger: TAAGAAGGCAGCAGAAGACCAAAAACGATATGAGAG...CCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp GAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTCTCTCATATCGTTTTTaGTCTTCTGCTGCCTTCTTA +
Preference number: 4 (lower is better)
Translates to: EVWRVRDRTQGETKVVKGLSYRF*SSAAFL
Trigger: TAAGAAGGCAGCAGAAGACCAAAAACGATATGAGAG...ACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp GGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTCTCTCATATCGTTTTTaGTCTTCTGCTGCCTTCTTA +
Preference number: 4 (lower is better)
Translates to: GGYGTEHRERQRLSKVVSLSYRF*SSAAFL
Trigger: TAAGAAGGCAGCAGAAGACCAAAAACGATATGAGAG...ACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp GAAAGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGACTTGCACATATCTCCTaGAAAATCCTTAAACGCAAC +
Preference number: 4 (lower is better)
Translates to: ERKKESGEVWRVRDRTQGLAHIS*KILKRN
Trigger: GTTGCGTTTAAGGATTTTTCAGGAGATATGTGCAAG...TCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR TCA 90 bp CCTCCAAAACAACTACACTGTTGTGTTGACCCCTCCACACGCCCAATATGGAGTCTTGCACATATCTCCTaGAAAATCCTTAAACGCAAC +
Preference number: 4 (lower is better)
Translates to: PPKQLHCCVDPSTRPIWSLAHIS*KILKRN
Trigger: GTTGCGTTTAAGGATTTTTCAGGAGATATGTGCAAG...ACTCCATATTGGGCGTGTGGAGGGGTCAACACAACAGTGTAGTTGTTTTGGAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000128016.2
CDS-3UTR GCA 90 bp AAGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGATTTTTGGTCTTCTGCTaGCTTCTTAATCCACATCAG +
Preference number: 4 (lower is better)
Translates to: KKERKWGSLEGTGQNTGRFLVFC*LLNPHQ
Trigger: CTGATGTGGATTAAGAAGGCAGCAGAAGACCAAAAA...TCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTTTTTTGGTCTTCTGCTaGCTTCTTAATCCACATCAG +
Preference number: 4 (lower is better)
Translates to: KSGGYGTEHRERQRLSKVFLVFC*LLNPHQ
Trigger: CTGATGTGGATTAAGAAGGCAGCAGAAGACCAAAAA...AACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTT
46% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CCA 90 bp AAAAGAAAGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAACTTGGAGCTGTCGTTaGATGGGAGGTTGTTCTTCA +
Preference number: 4 (lower is better)
Translates to: KRKKERKWGSLEGTGQNTTWSCR*MGGCSS
Trigger: TGAAGAACAACCTCCCATCCAACGACAGCTCCAAGT...TGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCTTTCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR GCA 90 bp AAAAGAAAGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACATCGTTTTTGGTCTTCTaGTGCCTTCTTAATCCACAT +
Preference number: 4 (lower is better)
Translates to: KRKKERKWGSLEGTGQNTSFLVF*CLLNPH
Trigger: ATGTGGATTAAGAAGGCAGCAGAAGACCAAAAACGA...TGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCTTTCTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
3UTR CAA 72 bp GCCGCTCCCGTGGTACAAATTCAAGTGTGGTGGTTGTaGAAACCTACAAAAGACTCCTTAAATATTAGAAAA +
Preference number: 4 (lower is better)
Translates to: AAPVVQIQVWWL*KPTKDSLNIRK
Trigger: TTTTCTAATATTTAAGGAGTCTTTTGTAGGTTTCAACAACCACCACACTTGAATTTGTACCACGGGAGCGGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGGCAGACACAGGCCGCTaGGGCTTCTCGGAGCCACCC +
Preference number: 5 (lower is better)
Translates to: RNCKCRRGAGWARPALAQADTGR*GFSEPP
Trigger: GGGTGGCTCCGAGAAGCCCAAGCGGCCTGTGTCTGC...CTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCTGATGGTTGCTGTGCAGACACAGGCCGCTaGGGCTTCTCGGAGCCACCC +
Preference number: 5 (lower is better)
Translates to: RRGAGWARPALAQSDGCCADTGR*GFSEPP
Trigger: GGGTGGCTCCGAGAAGCCCAAGCGGCCTGTGTCTGC...ACAGCAACCATCAGACTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCCTCGGACTCCGACTaGGACTGCAGGGTGGTCCGG +
Preference number: 5 (lower is better)
Translates to: RNCKCRRGAGWARPALAQSSDSD*DCRVVR
Trigger: CCGGACCACCCTGCAGTCCAAGTCGGAGTCCGAGGA...CTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS GCA 90 bp TCTGCTGCCAGATCTCCTCAGCCCTCTTGGGCGACTCCGGCAGCTTaGCCCTATCTTCACGCTCCCCGCCCGGCTTCCTCTCAGACTGCG +
Preference number: 5 (lower is better)
Translates to: SAARSPQPSWATPAA*PYLHAPRPASSQTA
Trigger: CGCAGTCTGAGAGGAAGCCGGGCGGGGAGCGTGAAGATAGGGGCAAGCTGCCGGAGTCGCCCAAGAGGGCTGAGGAGATCTGGCAGCAGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp TCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCGCAGACACAGGCCGCTaGGGCTTCTCGGAGCCACCC +
Preference number: 5 (lower is better)
Translates to: SIVHAGTANAEEGQGGPVADTGR*GFSEPP
Trigger: GGGTGGCTCCGAGAAGCCCAAGCGGCCTGTGTCTGC...GACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCTGATGGTTGCTGTATCTCCTCAGCCCTCTaGGGCGACTCCGGCAGCTTG +
Preference number: 5 (lower is better)
Translates to: RRGAGWARPALAQSDGCCISSAL*GDSGSL
Trigger: CAAGCTGCCGGAGTCGCCCAAGAGGGCTGAGGAGAT...ACAGCAACCATCAGACTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCTGTGGTCCGGCTAGACTaGGGGTTTGGGCCTCGGAGC +
Preference number: 5 (lower is better)
Translates to: NCKCRRGAGWARPALAQSVVRLD*GFGPRS
Trigger: GCTCCGAGGCCCAAACCCCAAGTCTAGCCGGACCAC...AGACTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp TCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCAGCTGGCGCTCGGCCTaGGTGAGGGTGGACTTGGTG +
Preference number: 5 (lower is better)
Translates to: SIVHAGTANAEEGQGGPVSWRSA*VRVDLV
Trigger: CACCAAGTCCACCCTCACCAAGGCCGAGCGCCAGCT...GACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCTCTGTTCGGAGGCGGCTaGGTAGGTCGCCCATCGAAC +
Preference number: 5 (lower is better)
Translates to: NCKCRRGAGWARPALAQSLFGGG*VGRPSN
Trigger: GTTCGATGGGCGACCTACCAAGCCGCCTCCGAACAG...AGACTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp TCCCAGGCCCTCCCAGTCCCAGAAATGACAACAGAGACGGCAGCCGAGATCGGTGTGGTCCGGCTAGACTaGGGGTTTGGGCCTCGGAGC +
Preference number: 5 (lower is better)
Translates to: SQALPVPEMTTETAAEIGVVRLD*GFGPRS
Trigger: GCTCCGAGGCCCAAACCCCAAGTCTAGCCGGACCAC...ACCGATCTCGGCTGCCGTCTCTGTTGTCATTTCTGGGACTGGGAGGGCCTGGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp ATCCCAGGCCCTCCCAGTCCCAGAAATGACAACAGAGACGGCAGCCGAGATCGGTCCTCGGACTCCGACTaGGACTGCAGGGTGGTCCGG +
Preference number: 5 (lower is better)
Translates to: IPGPPSPRNDNRDGSRDRSSDSD*DCRVVR
Trigger: CCGGACCACCCTGCAGTCCAAGTCGGAGTCCGAGGA...CCGATCTCGGCTGCCGTCTCTGTTGTCATTTCTGGGACTGGGAGGGCCTGGGAT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp TCCCAGGCCCTCCCAGTCCCAGAAATGACAACAGAGACGGCAGCCGAGATCGGTTCCTCGGACTCCGACTaGGACTGCAGGGTGGTCCGG +
Preference number: 5 (lower is better)
Translates to: SQALPVPEMTTETAAEIGSSDSD*DCRVVR
Trigger: CCGGACCACCCTGCAGTCCAAGTCGGAGTCCGAGGA...ACCGATCTCGGCTGCCGTCTCTGTTGTCATTTCTGGGACTGGGAGGGCCTGGGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCCAGTCCTCGGACTCCGACTaGGACTGCAGGGTGGTCCGG +
Preference number: 5 (lower is better)
Translates to: RDRATACFLEGSTLVSLQSSDSD*DCRVVR
Trigger: CCGGACCACCCTGCAGTCCAAGTCGGAGTCCGAGGA...CTGGAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp ATCCCAGGCCCTCCCAGTCCCAGAAATGACAACAGAGACGGCAGCCGAGATCGGCTGTTCGGAGGCGGCTaGGTAGGTCGCCCATCGAAC +
Preference number: 5 (lower is better)
Translates to: IPGPPSPRNDNRDGSRDRLFGGG*VGRPSN
Trigger: GTTCGATGGGCGACCTACCAAGCCGCCTCCGAACAG...CCGATCTCGGCTGCCGTCTCTGTTGTCATTTCTGGGACTGGGAGGGCCTGGGAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CCCCAAACTCCCCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGGCAGACACAGGCCGCTaGGGCTTCTCGGAGCCACCC +
Preference number: 5 (lower is better)
Translates to: PQTPQSIVHAGTANAEEGADTGR*GFSEPP
Trigger: GGGTGGCTCCGAGAAGCCCAAGCGGCCTGTGTCTGC...CCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGGGGAGTTTGGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp TCCCAGGCCCTCCCAGTCCCAGAAATGACAACAGAGACGGCAGCCGAGATCGGTATCTCCTCAGCCCTCTaGGGCGACTCCGGCAGCTTG +
Preference number: 5 (lower is better)
Translates to: SQALPVPEMTTETAAEIGISSAL*GDSGSL
Trigger: CAAGCTGCCGGAGTCGCCCAAGAGGGCTGAGGAGAT...ACCGATCTCGGCTGCCGTCTCTGTTGTCATTTCTGGGACTGGGAGGGCCTGGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CTCCCCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGTGGTCCGGCTAGACTaGGGGTTTGGGCCTCGGAGC +
Preference number: 5 (lower is better)
Translates to: LPSPLSMPELQMQKRGRVVVRLD*GFGPRS
Trigger: GCTCCGAGGCCCAAACCCCAAGTCTAGCCGGACCAC...CACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGGGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AAGATGGCAGGGAGGGGCAGCCTTGGTTTGTTCCTGCTAGGGACACCATCTCCCGTGGTCCGGCTAGACTaGGGGTTTGGGCCTCGGAGC +
Preference number: 5 (lower is better)
Translates to: KMAGRGSLGLFLLGTPSPVVRLD*GFGPRS
Trigger: GCTCCGAGGCCCAAACCCCAAGTCTAGCCGGACCAC...GGGAGATGGTGTCCCTAGCAGGAACAAACCAAGGCTGCCCCTCCCTGCCATCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CCCCAAACTCCCCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGAGCTGGCGCTCGGCCTaGGTGAGGGTGGACTTGGTG +
Preference number: 5 (lower is better)
Translates to: PQTPQSIVHAGTANAEEGSWRSA*VRVDLV
Trigger: CACCAAGTCCACCCTCACCAAGGCCGAGCGCCAGCT...CCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGGGGAGTTTGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GCCCTCCCAGTCCCAGAAATGACAACAGAGACGGCAGCCGAGATCGGTAGGAAAAGCTGGCGCTCGGCCTaGGTGAGGGTGGACTTGGTG +
Preference number: 5 (lower is better)
Translates to: ALPVPEMTTETAAEIGRKSWRSA*VRVDLV
Trigger: CACCAAGTCCACCCTCACCAAGGCCGAGCGCCAGCT...TTTCCTACCGATCTCGGCTGCCGTCTCTGTTGTCATTTCTGGGACTGGGAGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCAGCTGGCGCTCGGCCTaGGTGAGGGTGGACTTGGTG +
Preference number: 5 (lower is better)
Translates to: QAAGVEVSPNSLRLSPTPSWRSA*VRVDLV
Trigger: CACCAAGTCCACCCTCACCAAGGCCGAGCGCCAGCT...GGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCAAGCAGACACAGGCCGCTaGGGCTTCTCGGAGCCACCC +
Preference number: 5 (lower is better)
Translates to: GCRCGGLTKLFKTLSHPQADTGR*GFSEPP
Trigger: GGGTGGCTCCGAGAAGCCCAAGCGGCCTGTGTCTGC...TTGGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCTGATGGTTGCTGTGCAGCCTCCCGGGCCTaGTATTTAGCCTTCTTCTTC +
Preference number: 5 (lower is better)
Translates to: RRGAGWARPALAQSDGCCAASRA*YLAFFF
Trigger: GAAGAAGAAGGCTAAATACAAGGCCCGGGAGGCTGC...ACAGCAACCATCAGACTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp TCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTCTTGTACTGCCTCTGTaGCTCCTCCGCCAGCTTCTT +
Preference number: 5 (lower is better)
Translates to: SMPELQMQKRGRVGPSSALVLPL*LLRQLL
Trigger: AAGAAGCTGGCGGAGGAGCAACAGAGGCAGTACAAG...AGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp ATCCCAGGCCCTCCCAGTCCCAGAAATGACAACAGAGACGGCAGCCGAGATCGGTGGGGAGACAGGCTCTaGACCCAGAGGTCCAAGTGC +
Preference number: 5 (lower is better)
Translates to: IPGPPSPRNDNRDGSRDRWGDRL*TQRSKC
Trigger: GCACTTGGACCTCTGGGTCAAGAGCCTGTCTCCCCA...CCGATCTCGGCTGCCGTCTCTGTTGTCATTTCTGGGACTGGGAGGGCCTGGGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGAGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCCTGGGGAGACAGGCTCTaGACCCAGAGGTCCAAGTGC +
Preference number: 5 (lower is better)
Translates to: RGTGPLPAFLKAAPLSPSWGDRL*TQRSKC
Trigger: GCACTTGGACCTCTGGGTCAAGAGCCTGTCTCCCCA...GGAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCCAGTGGGGAGACAGGCTCTaGACCCAGAGGTCCAAGTGC +
Preference number: 5 (lower is better)
Translates to: RDRATACFLEGSTLVSLQWGDRL*TQRSKC
Trigger: GCACTTGGACCTCTGGGTCAAGAGCCTGTCTCCCCA...CTGGAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCGTGGTCCGGCTAGACTaGGGGTTTGGGCCTCGGAGC +
Preference number: 5 (lower is better)
Translates to: QAAGVEVSPNSLRLSPTPVVRLD*GFGPRS
Trigger: GCTCCGAGGCCCAAACCCCAAGTCTAGCCGGACCAC...GGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CCCCAAACTCCCCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGTCCTCGGACTCCGACTaGGACTGCAGGGTGGTCCGG +
Preference number: 5 (lower is better)
Translates to: PQTPQSIVHAGTANAEEGSSDSD*DCRVVR
Trigger: CCGGACCACCCTGCAGTCCAAGTCGGAGTCCGAGGA...CCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGGGGAGTTTGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp ATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCGGGATGTCCGACTTCTaGGCATTCTGGATAAGGTCA +
Preference number: 5 (lower is better)
Translates to: MPELQMQKRGRVGPSSAGGMSDF*AFWIRS
Trigger: TGACCTTATCCAGAATGCCAAGAAGTCGGACATCCC...GCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACAGCTGGCGCTCGGCCTaGGTGAGGGTGGACTTGGTG +
Preference number: 5 (lower is better)
Translates to: AAGCRCGGLTKLFKTLSHSWRSA*VRVDLV
Trigger: CACCAAGTCCACCCTCACCAAGGCCGAGCGCCAGCT...GTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp TCTGCATACAGGGGTGGCGGCAGGAAAGAGGGAGCAGACCTGAGAACTCAAAGGCTGTTCGGAGGCGGCTaGGTAGGTCGCCCATCGAAC +
Preference number: 5 (lower is better)
Translates to: SAYRGGGRKEGADLRTQRLFGGG*VGRPSN
Trigger: GTTCGATGGGCGACCTACCAAGCCGCCTCCGAACAG...CCTTTGAGTTCTCAGGTCTGCTCCCTCTTTCCTGCCGCCACCCCTGTATGCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTGCAGACACAGGCCGCTaGGGCTTCTCGGAGCCACCC +
Preference number: 5 (lower is better)
Translates to: KWGSLEGTGQNTGRDKGCADTGR*GFSEPP
Trigger: GGGTGGCTCCGAGAAGCCCAAGCGGCCTGTGTCTGC...ACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTGCAGACACAGGCCGCTaGGGCTTCTCGGAGCCACCC +
Preference number: 5 (lower is better)
Translates to: RKWGSLEGTGQNTGRDKGADTGR*GFSEPP
Trigger: GGGTGGCTCCGAGAAGCCCAAGCGGCCTGTGTCTGC...ACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCGCAGCCTCCCGGGCCTaGTATTTAGCCTTCTTCTTC +
Preference number: 5 (lower is better)
Translates to: PLSMPELQMQKRGRVGPSAASRA*YLAFFF
Trigger: GAAGAAGAAGGCTAAATACAAGGCCCGGGAGGCTGC...GGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCTGCAGCCTCCCGGGCCTaGTATTTAGCCTTCTTCTTC +
Preference number: 5 (lower is better)
Translates to: NCKCRRGAGWARPALAQSAASRA*YLAFFF
Trigger: GAAGAAGAAGGCTAAATACAAGGCCCGGGAGGCTGC...AGACTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CAGTCCAGGCAAATGTCTTTGCTTTCAAGAGGGACTGGCAGCTGGGCTGCAGCCATCTCCTCAGCCCTCTaGGGCGACTCCGGCAGCTTG +
Preference number: 5 (lower is better)
Translates to: QSRQMSLLSRGTGSWAAAISSAL*GDSGSL
Trigger: CAAGCTGCCGGAGTCGCCCAAGAGGGCTGAGGAGAT...GGCTGCAGCCCAGCTGCCAGTCCCTCTTGAAAGCAAAGACATTTGCCTGGACTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AAGATGGCAGGGAGGGGCAGCCTTGGTTTGTTCCTGCTAGGGACACCATCTCCCTGGGGAGACAGGCTCTaGACCCAGAGGTCCAAGTGC +
Preference number: 5 (lower is better)
Translates to: KMAGRGSLGLFLLGTPSPWGDRL*TQRSKC
Trigger: GCACTTGGACCTCTGGGTCAAGAGCCTGTCTCCCCA...GGGAGATGGTGTCCCTAGCAGGAACAAACCAAGGCTGCCCCTCCCTGCCATCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCTCTGTGGTTTTGAACTaGGAGCTGTCGTTGGATGGG +
Preference number: 5 (lower is better)
Translates to: ELQMQKRGRVGPSSAGSVSVVLN*ELSLDG
Trigger: CCCATCCAACGACAGCTCCAAGTTCAAAACCACAGA...GACTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCCAGAGTTGCTGGGGAGTTTaGGGTTTCTCGGGGATGTCC +
Preference number: 5 (lower is better)
Translates to: RDRATACFLEGSTLVSLQSCWGV*GFSGMS
Trigger: GGACATCCCCGAGAAACCCAAAACTCCCCAGCAACT...CTGGAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCTCTCCAGCTGGCGCTCGGCCTaGGTGAGGGTGGACTTGGTG +
Preference number: 5 (lower is better)
Translates to: KGCQRLSVGEMSSAGALSSWRSA*VRVDLV
Trigger: CACCAAGTCCACCCTCACCAAGGCCGAGCGCCAGCT...GGAGAGAGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGAGCTGGCGCTCGGCCTaGGTGAGGGTGGACTTGGTG +
Preference number: 5 (lower is better)
Translates to: KKVGKSGGYGTEHRERQRSWRSA*VRVDLV
Trigger: CACCAAGTCCACCCTCACCAAGGCCGAGCGCCAGCT...CCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGAGCTGGCGCTCGGCCTaGGTGAGGGTGGACTTGGTG +
Preference number: 5 (lower is better)
Translates to: GRDKGCQRLSVGEMSSAGSWRSA*VRVDLV
Trigger: CACCAAGTCCACCCTCACCAAGGCCGAGCGCCAGCT...CCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCTGTTCGGAGGCGGCTaGGTAGGTCGCCCATCGAAC +
Preference number: 5 (lower is better)
Translates to: AAGCRCGGLTKLFKTLSHLFGGG*VGRPSN
Trigger: GTTCGATGGGCGACCTACCAAGCCGCCTCCGAACAG...GTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCCTGTTCGGAGGCGGCTaGGTAGGTCGCCCATCGAAC +
Preference number: 5 (lower is better)
Translates to: SGEVWRVRDRTQGETKVVLFGGG*VGRPSN
Trigger: GTTCGATGGGCGACCTACCAAGCCGCCTCCGAACAG...GACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGCAGACACAGGCCGCTaGGGCTTCTCGGAGCCACCC +
Preference number: 5 (lower is better)
Translates to: KESGEVWRVRDRTQGETKADTGR*GFSEPP
Trigger: GGGTGGCTCCGAGAAGCCCAAGCGGCCTGTGTCTGC...CTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGAGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCCGCAGCCTCCCGGGCCTaGTATTTAGCCTTCTTCTTC +
Preference number: 5 (lower is better)
Translates to: RGTGPLPAFLKAAPLSPSAASRA*YLAFFF
Trigger: GAAGAAGAAGGCTAAATACAAGGCCCGGGAGGCTGC...GGAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGAGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCCCTTGTACTGCCTCTGTaGCTCCTCCGCCAGCTTCTT +
Preference number: 5 (lower is better)
Translates to: RGTGPLPAFLKAAPLSPSLVLPL*LLRQLL
Trigger: AAGAAGCTGGCGGAGGAGCAACAGAGGCAGTACAAG...GGAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CCCCCGAACATCCACCTTGCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCCTTGTACTGCCTCTGTaGCTCCTCCGCCAGCTTCTT +
Preference number: 5 (lower is better)
Translates to: PPNIHLAAGCRCGGLTKLLVLPL*LLRQLL
Trigger: AAGAAGCTGGCGGAGGAGCAACAGAGGCAGTACAAG...GAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGCAAGGTGGATGTTCGGGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCCAGCTTGTACTGCCTCTGTaGCTCCTCCGCCAGCTTCTT +
Preference number: 5 (lower is better)
Translates to: RDRATACFLEGSTLVSLQLVLPL*LLRQLL
Trigger: AAGAAGCTGGCGGAGGAGCAACAGAGGCAGTACAAG...CTGGAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCTGATGGTTGCTGTTTGGAGATGTATTCTTaGTATGCTGCGCGGTCCTGG +
Preference number: 5 (lower is better)
Translates to: RRGAGWARPALAQSDGCCLEMYS*YAARSW
Trigger: CCAGGACCGCGCAGCATACAAAGAATACATCTCCAA...ACAGCAACCATCAGACTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp TGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTTTTGGGCCTCGGAGCTaGGTCATGTTCTTACGTTTA +
Preference number: 5 (lower is better)
Translates to: CRNCKCRRGAGWARPALAFGPRS*VMFLRL
Trigger: TAAACGTAAGAACATGACCAAGCTCCGAGGCCCAAA...AGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCAAACTCCCGTGGTCCGGCTAGACTaGGGGTTTGGGCCTCGGAGC +
Preference number: 5 (lower is better)
Translates to: RCGGLTKLFKTLSHPQTPVVRLD*GFGPRS
Trigger: GCTCCGAGGCCCAAACCCCAAGTCTAGCCGGACCAC...GGGAGTTTGGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGGTGGTCCGGCTAGACTaGGGGTTTGGGCCTCGGAGC +
Preference number: 5 (lower is better)
Translates to: KVGKSGGYGTEHRERQRLVVRLD*GFGPRS
Trigger: GCTCCGAGGCCCAAACCCCAAGTCTAGCCGGACCAC...CAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCAAACTCGTGGTCCGGCTAGACTaGGGGTTTGGGCCTCGGAGC +
Preference number: 5 (lower is better)
Translates to: AGVEVSPNSLRLSPTPKLVVRLD*GFGPRS
Trigger: GCTCCGAGGCCCAAACCCCAAGTCTAGCCGGACCAC...GAGTTTGGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGTCCTCGGACTCCGACTaGGACTGCAGGGTGGTCCGG +
Preference number: 5 (lower is better)
Translates to: GKSGGYGTEHRERQRLSKSSDSD*DCRVVR
Trigger: CCGGACCACCCTGCAGTCCAAGTCGGAGTCCGAGGA...CTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp TTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGGGATGTCCGACTTCTaGGCATTCTGGATAAGGTCA +
Preference number: 5 (lower is better)
Translates to: LSMPELQMQKRGRVGPSSGMSDF*AFWIRS
Trigger: TGACCTTATCCAGAATGCCAAGAAGTCGGACATCCC...GCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTAGCTGGCGCTCGGCCTaGGTGAGGGTGGACTTGGTG +
Preference number: 5 (lower is better)
Translates to: EVWRVRDRTQGETKVVKGSWRSA*VRVDLV
Trigger: CACCAAGTCCACCCTCACCAAGGCCGAGCGCCAGCT...ACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGCTGTTCGGAGGCGGCTaGGTAGGTCGCCCATCGAAC +
Preference number: 5 (lower is better)
Translates to: GRDKGCQRLSVGEMSSAGLFGGG*VGRPSN
Trigger: GTTCGATGGGCGACCTACCAAGCCGCCTCCGAACAG...CCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGCAGACACAGGCCGCTaGGGCTTCTCGGAGCCACCC +
Preference number: 5 (lower is better)
Translates to: KSGGYGTEHRERQRLSKVADTGR*GFSEPP
Trigger: GGGTGGCTCCGAGAAGCCCAAGCGGCCTGTGTCTGC...AACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CTCCCCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGCAGCCTCCCGGGCCTaGTATTTAGCCTTCTTCTTC +
Preference number: 5 (lower is better)
Translates to: LPSPLSMPELQMQKRGRVAASRA*YLAFFF
Trigger: GAAGAAGAAGGCTAAATACAAGGCCCGGGAGGCTGC...CACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGGGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCAAACTCCCATCTCCTCAGCCCTCTaGGGCGACTCCGGCAGCTTG +
Preference number: 5 (lower is better)
Translates to: RCGGLTKLFKTLSHPQTPISSAL*GDSGSL
Trigger: CAAGCTGCCGGAGTCGCCCAAGAGGGCTGAGGAGAT...GGGAGTTTGGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCTCTCCATCTCCTCAGCCCTCTaGGGCGACTCCGGCAGCTTG +
Preference number: 5 (lower is better)
Translates to: KGCQRLSVGEMSSAGALSISSAL*GDSGSL
Trigger: CAAGCTGCCGGAGTCGCCCAAGAGGGCTGAGGAGAT...GGAGAGAGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CTTGCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCATCTCCTCAGCCCTCTaGGGCGACTCCGGCAGCTTG +
Preference number: 5 (lower is better)
Translates to: LAAGCRCGGLTKLFKTLSISSAL*GDSGSL
Trigger: CAAGCTGCCGGAGTCGCCCAAGAGGGCTGAGGAGAT...GGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGCAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp ATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCCTTCTTCTCCATGTaGTTCCAAGTCATCTCCATG +
Preference number: 5 (lower is better)
Translates to: MPELQMQKRGRVGPSSAGSFFSM*FQVISM
Trigger: CATGGAGATGACTTGGAACAACATGGAGAAGAAGGA...GCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp TCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTTTCATAGGAGGTTTCTaGGGTTCTCCCTGGAACTTC +
Preference number: 5 (lower is better)
Translates to: SMPELQMQKRGRVGPSSAFIGGF*GSPWNF
Trigger: GAAGTTCCAGGGAGAACCCAAGAAACCTCCTATGAA...AGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AAGAGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCCTTGTACTGCCTCTGTaGCTCCTCCGCCAGCTTCTT +
Preference number: 5 (lower is better)
Translates to: KRDRATACFLEGSTLVSLLVLPL*LLRQLL
Trigger: AAGAAGCTGGCGGAGGAGCAACAGAGGCAGTACAAG...GAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGGTGGTCCGGCTAGACTaGGGGTTTGGGCCTCGGAGC +
Preference number: 5 (lower is better)
Translates to: RKKESGEVWRVRDRTQGEVVRLD*GFGPRS
Trigger: GCTCCGAGGCCCAAACCCCAAGTCTAGCCGGACCAC...CTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGTCCTCGGACTCCGACTaGGACTGCAGGGTGGTCCGG +
Preference number: 5 (lower is better)
Translates to: RERQRLSKVVSWGDELCRSSDSD*DCRVVR
Trigger: CCGGACCACCCTGCAGTCCAAGTCGGAGTCCGAGGA...CCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp TGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTTCCACCCATTTGAGCTaGCACATATCTCCTGAAAAA +
Preference number: 5 (lower is better)
Translates to: CRNCKCRRGAGWARPALASTHLS*HISPEK
Trigger: TTTTTCAGGAGATATGTGCAAGCTCAAATGGGTGGA...AGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCTGATGGTTGCTGTGAAATCTCCACCCATTaGAGCTTGCACATATCTCCT +
Preference number: 5 (lower is better)
Translates to: RRGAGWARPALAQSDGCCEISTH*SLHISP
Trigger: AGGAGATATGTGCAAGCTCAAATGGGTGGAGATTTC...ACAGCAACCATCAGACTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp TCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGAAATCTCCACCCATTaGAGCTTGCACATATCTCCT +
Preference number: 5 (lower is better)
Translates to: SMPELQMQKRGRVGPSSAEISTH*SLHISP
Trigger: AGGAGATATGTGCAAGCTCAAATGGGTGGAGATTTC...AGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCGGGATGTCCGACTTCTaGGCATTCTGGATAAGGTCA +
Preference number: 5 (lower is better)
Translates to: PVHCPCRNCKCRRGAGWAGMSDF*AFWIRS
Trigger: TGACCTTATCCAGAATGCCAAGAAGTCGGACATCCC...GGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCTCTGTTCGGAGGCGGCTaGGTAGGTCGCCCATCGAAC +
Preference number: 5 (lower is better)
Translates to: RQRLSKVVSWGDELCRGSLFGGG*VGRPSN
Trigger: GTTCGATGGGCGACCTACCAAGCCGCCTCCGAACAG...AGAGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CCCCAAACTCCCCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGGCAGCCTCCCGGGCCTaGTATTTAGCCTTCTTCTTC +
Preference number: 5 (lower is better)
Translates to: PQTPQSIVHAGTANAEEGAASRA*YLAFFF
Trigger: GAAGAAGAAGGCTAAATACAAGGCCCGGGAGGCTGC...CCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGGGGAGTTTGGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGATCTCCTCAGCCCTCTaGGGCGACTCCGGCAGCTTG +
Preference number: 5 (lower is better)
Translates to: GTGQNTGRDKGCQRLSVGISSAL*GDSGSL
Trigger: CAAGCTGCCGGAGTCGCCCAAGAGGGCTGAGGAGAT...CCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp TGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTTCTCTCATATCGTTTTaGGTCTTCTGCTGCCTTCTT +
Preference number: 5 (lower is better)
Translates to: CRNCKCRRGAGWARPALASLISF*VFCCLL
Trigger: AAGAAGGCAGCAGAAGACCAAAAACGATATGAGAGA...AGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp TGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTTGGAACTTCATCTTCTaGGAAGAGTTTGTAGCAGCT +
Preference number: 5 (lower is better)
Translates to: CRNCKCRRGAGWARPALAWNFIF*EEFVAA
Trigger: AGCTGCTACAAACTCTTCCAAGAAGATGAAGTTCCA...AGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCTTTCATAGGAGGTTTCTaGGGTTCTCCCTGGAACTTC +
Preference number: 5 (lower is better)
Translates to: NCKCRRGAGWARPALAQSFIGGF*GSPWNF
Trigger: GAAGTTCCAGGGAGAACCCAAGAAACCTCCTATGAA...AGACTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CCCCAAACTCCCCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCTTGTACTGCCTCTGTaGCTCCTCCGCCAGCTTCTT +
Preference number: 5 (lower is better)
Translates to: PQTPQSIVHAGTANAEEGLVLPL*LLRQLL
Trigger: AAGAAGCTGGCGGAGGAGCAACAGAGGCAGTACAAG...CCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGGGGAGTTTGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCTCTCCTGGGGAGACAGGCTCTaGACCCAGAGGTCCAAGTGC +
Preference number: 5 (lower is better)
Translates to: KGCQRLSVGEMSSAGALSWGDRL*TQRSKC
Trigger: GCACTTGGACCTCTGGGTCAAGAGCCTGTCTCCCCA...GGAGAGAGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS GCA 90 bp CGGGTCAGTTCGCTTTCGGAGAGCTCAGGTCGTTCCTCCTGTAGCTaGCTTCGCTTCTCCTCAGAGAAGATGAACATAGCAGACACAGGC +
Preference number: 5 (lower is better)
Translates to: RVSSLSESSGRSSCS*LRFSSEKMNIADTG
Trigger: GCCTGTGTCTGCTATGTTCATCTTCTCTGAGGAGAAGCGAAGGCAGCTACAGGAGGAACGACCTGAGCTCTCCGAAAGCGAACTGACCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AAGAGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCTCTGTGGTTTTGAACTaGGAGCTGTCGTTGGATGGG +
Preference number: 5 (lower is better)
Translates to: KRDRATACFLEGSTLVSLSVVLN*ELSLDG
Trigger: CCCATCCAACGACAGCTCCAAGTTCAAAACCACAGA...GAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CAATGGGTCCTGTCTGACCATGTGTGGGCCAGGAGGGGGATAGGTACCCCGGTGGAAATCTCCACCCATTaGAGCTTGCACATATCTCCT +
Preference number: 5 (lower is better)
Translates to: QWVLSDHVWARRGIGTPVEISTH*SLHISP
Trigger: AGGAGATATGTGCAAGCTCAAATGGGTGGAGATTTC...CACCGGGGTACCTATCCCCCTCCTGGCCCACACATGGTCAGACAGGACCCATTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000128016.2
CDS-3UTR CAA 90 bp ATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTTCTCTGGAAGTTCCTaGTATTTCTTAGACAGGATC +
Preference number: 5 (lower is better)
Translates to: MPELQMQKRGRVGPSSAGFSGSS*YFLDRI
Trigger: GATCCTGTCTAAGAAATACAAGGAACTTCCAGAGAA...GCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCAGTTGCTGGGGAGTTTaGGGTTTCTCGGGGATGTCC +
Preference number: 5 (lower is better)
Translates to: LQAAGVEVSPNSLRLSPTSCWGV*GFSGMS
Trigger: GGACATCCCCGAGAAACCCAAAACTCCCCAGCAACT...GGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GAAAGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGACTGTTCGGAGGCGGCTaGGTAGGTCGCCCATCGAAC +
Preference number: 5 (lower is better)
Translates to: ERKKESGEVWRVRDRTQGLFGGG*VGRPSN
Trigger: GTTCGATGGGCGACCTACCAAGCCGCCTCCGAACAG...TCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTATCTCCTCAGCCCTCTaGGGCGACTCCGGCAGCTTG +
Preference number: 5 (lower is better)
Translates to: KSGGYGTEHRERQRLSKVISSAL*GDSGSL
Trigger: CAAGCTGCCGGAGTCGCCCAAGAGGGCTGAGGAGAT...AACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AAGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAATCTCCTCAGCCCTCTaGGGCGACTCCGGCAGCTTG +
Preference number: 5 (lower is better)
Translates to: KKERKWGSLEGTGQNTGRISSAL*GDSGSL
Trigger: CAAGCTGCCGGAGTCGCCCAAGAGGGCTGAGGAGAT...TCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCTTCCTTCTTCTCCATGTaGTTCCAAGTCATCTCCATG +
Preference number: 5 (lower is better)
Translates to: NCKCRRGAGWARPALAQSSFFSM*FQVISM
Trigger: CATGGAGATGACTTGGAACAACATGGAGAAGAAGGA...AGACTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCTGATGGTTGCTGTTGGAACTTCATCTTCTaGGAAGAGTTTGTAGCAGCT +
Preference number: 5 (lower is better)
Translates to: RRGAGWARPALAQSDGCCWNFIF*EEFVAA
Trigger: AGCTGCTACAAACTCTTCCAAGAAGATGAAGTTCCA...ACAGCAACCATCAGACTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp TCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCTTCATAGGAGGTTTCTaGGGTTCTCCCTGGAACTTC +
Preference number: 5 (lower is better)
Translates to: SIVHAGTANAEEGQGGPVFIGGF*GSPWNF
Trigger: GAAGTTCCAGGGAGAACCCAAGAAACCTCCTATGAA...GACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGTGGGGAGACAGGCTCTaGACCCAGAGGTCCAAGTGC +
Preference number: 5 (lower is better)
Translates to: KESGEVWRVRDRTQGETKWGDRL*TQRSKC
Trigger: GCACTTGGACCTCTGGGTCAAGAGCCTGTCTCCCCA...CTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGTGGGGAGACAGGCTCTaGACCCAGAGGTCCAAGTGC +
Preference number: 5 (lower is better)
Translates to: RERQRLSKVVSWGDELCRWGDRL*TQRSKC
Trigger: GCACTTGGACCTCTGGGTCAAGAGCCTGTCTCCCCA...CCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CAGGGAAGAGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTTTGGAGATGTATTCTTaGTATGCTGCGCGGTCCTGG +
Preference number: 5 (lower is better)
Translates to: QGRGTGPLPAFLKAAPLSLEMYS*YAARSW
Trigger: CCAGGACCGCGCAGCATACAAAGAATACATCTCCAA...AGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCTCTTCCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CTCCCCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGTTGGAGATGTATTCTTaGTATGCTGCGCGGTCCTGG +
Preference number: 5 (lower is better)
Translates to: LPSPLSMPELQMQKRGRVLEMYS*YAARSW
Trigger: CCAGGACCGCGCAGCATACAAAGAATACATCTCCAA...CACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGGGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGAGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCCTTTGGGCCTCGGAGCTaGGTCATGTTCTTACGTTTA +
Preference number: 5 (lower is better)
Translates to: RGTGPLPAFLKAAPLSPSFGPRS*VMFLRL
Trigger: TAAACGTAAGAACATGACCAAGCTCCGAGGCCCAAA...GGAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCTCTGTGGTTTTGAACTaGGAGCTGTCGTTGGATGGG +
Preference number: 5 (lower is better)
Translates to: QAAGVEVSPNSLRLSPTPSVVLN*ELSLDG
Trigger: CCCATCCAACGACAGCTCCAAGTTCAAAACCACAGA...GGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CCCCAAACTCCCCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGTCTGTGGTTTTGAACTaGGAGCTGTCGTTGGATGGG +
Preference number: 5 (lower is better)
Translates to: PQTPQSIVHAGTANAEEGSVVLN*ELSLDG
Trigger: CCCATCCAACGACAGCTCCAAGTTCAAAACCACAGA...CCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGGGGAGTTTGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp TTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCTCCACCCATTTGAGCTaGCACATATCTCCTGAAAAA +
Preference number: 5 (lower is better)
Translates to: LSMPELQMQKRGRVGPSSSTHLS*HISPEK
Trigger: TTTTTCAGGAGATATGTGCAAGCTCAAATGGGTGGA...GCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCGAAATCTCCACCCATTaGAGCTTGCACATATCTCCT +
Preference number: 5 (lower is better)
Translates to: PVHCPCRNCKCRRGAGWAEISTH*SLHISP
Trigger: AGGAGATATGTGCAAGCTCAAATGGGTGGAGATTTC...GGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GCCCTCCCAGTCCCAGAAATGACAACAGAGACGGCAGCCGAGATCGGTAGGAAAGGGATGTCCGACTTCTaGGCATTCTGGATAAGGTCA +
Preference number: 5 (lower is better)
Translates to: ALPVPEMTTETAAEIGRKGMSDF*AFWIRS
Trigger: TGACCTTATCCAGAATGCCAAGAAGTCGGACATCCC...TTTCCTACCGATCTCGGCTGCCGTCTCTGTTGTCATTTCTGGGACTGGGAGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp TTGCTTTCAAGAGGGACTGGCAGCTGGGCTGCAGCCTACTTTCTGTGGAGAGCCGGGATGTCCGACTTCTaGGCATTCTGGATAAGGTCA +
Preference number: 5 (lower is better)
Translates to: LLSRGTGSWAAAYFLWRAGMSDF*AFWIRS
Trigger: TGACCTTATCCAGAATGCCAAGAAGTCGGACATCCC...GGCTCTCCACAGAAAGTAGGCTGCAGCCCAGCTGCCAGTCCCTCTTGAAAGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CACCTTGCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCAGTTGCTGGGGAGTTTaGGGTTTCTCGGGGATGTCC +
Preference number: 5 (lower is better)
Translates to: HLAAGCRCGGLTKLFKTLSCWGV*GFSGMS
Trigger: GGACATCCCCGAGAAACCCAAAACTCCCCAGCAACT...GAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGCAAGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTAGTTGCTGGGGAGTTTaGGGTTTCTCGGGGATGTCC +
Preference number: 5 (lower is better)
Translates to: RKWGSLEGTGQNTGRDKGSCWGV*GFSGMS
Trigger: GGACATCCCCGAGAAACCCAAAACTCCCCAGCAACT...ACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp TCTTTGCTTTCAAGAGGGACTGGCAGCTGGGCTGCAGCCTACTTTCTGTGGAGAAGTTGCTGGGGAGTTTaGGGTTTCTCGGGGATGTCC +
Preference number: 5 (lower is better)
Translates to: SLLSRGTGSWAAAYFLWRSCWGV*GFSGMS
Trigger: GGACATCCCCGAGAAACCCAAAACTCCCCAGCAACT...TCTCCACAGAAAGTAGGCTGCAGCCCAGCTGCCAGTCCCTCTTGAAAGCAAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTCTGTTCGGAGGCGGCTaGGTAGGTCGCCCATCGAAC +
Preference number: 5 (lower is better)
Translates to: NTGRDKGCQRLSVGEMSSLFGGG*VGRPSN
Trigger: GTTCGATGGGCGACCTACCAAGCCGCCTCCGAACAG...AGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CTTGCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCGCAGCCTCCCGGGCCTaGTATTTAGCCTTCTTCTTC +
Preference number: 5 (lower is better)
Translates to: LAAGCRCGGLTKLFKTLSAASRA*YLAFFF
Trigger: GAAGAAGAAGGCTAAATACAAGGCCCGGGAGGCTGC...GGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTGCAGCCTCCCGGGCCTaGTATTTAGCCTTCTTCTTC +
Preference number: 5 (lower is better)
Translates to: RKWGSLEGTGQNTGRDKGAASRA*YLAFFF
Trigger: GAAGAAGAAGGCTAAATACAAGGCCCGGGAGGCTGC...ACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CCCCCGAACATCCACCTTGCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTCCTTCTTCTCCATGTaGTTCCAAGTCATCTCCATG +
Preference number: 5 (lower is better)
Translates to: PPNIHLAAGCRCGGLTKLSFFSM*FQVISM
Trigger: CATGGAGATGACTTGGAACAACATGGAGAAGAAGGA...GAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGCAAGGTGGATGTTCGGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCCAGCGCTGGCTCAGTCTTGGAACTTCATCTTCTaGGAAGAGTTTGTAGCAGCT +
Preference number: 5 (lower is better)
Translates to: NCKCRRGAGWARPALAQSWNFIF*EEFVAA
Trigger: AGCTGCTACAAACTCTTCCAAGAAGATGAAGTTCCA...AGACTGAGCCAGCGCTGGACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CTTGCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCTTGTACTGCCTCTGTaGCTCCTCCGCCAGCTTCTT +
Preference number: 5 (lower is better)
Translates to: LAAGCRCGGLTKLFKTLSLVLPL*LLRQLL
Trigger: AAGAAGCTGGCGGAGGAGCAACAGAGGCAGTACAAG...GGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGTGGGGAGACAGGCTCTaGACCCAGAGGTCCAAGTGC +
Preference number: 5 (lower is better)
Translates to: RVRDRTQGETKVVKGCQLWGDRL*TQRSKC
Trigger: GCACTTGGACCTCTGGGTCAAGAGCCTGTCTCCCCA...CAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTTGGGGAGACAGGCTCTaGACCCAGAGGTCCAAGTGC +
Preference number: 5 (lower is better)
Translates to: KSGGYGTEHRERQRLSKVWGDRL*TQRSKC
Trigger: GCACTTGGACCTCTGGGTCAAGAGCCTGTCTCCCCA...AACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CTCCCCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGTTTGGGCCTCGGAGCTaGGTCATGTTCTTACGTTTA +
Preference number: 5 (lower is better)
Translates to: LPSPLSMPELQMQKRGRVFGPRS*VMFLRL
Trigger: TAAACGTAAGAACATGACCAAGCTCCGAGGCCCAAA...CACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGGGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACAACTTGGAGCTGTCGTaGGATGGGAGGTTGTTCTTC +
Preference number: 5 (lower is better)
Translates to: AAGCRCGGLTKLFKTLSHNLELS*DGRLFF
Trigger: GAAGAACAACCTCCCATCCAACGACAGCTCCAAGTT...GTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCAAAACTTGGAGCTGTCGTaGGATGGGAGGTTGTTCTTC +
Preference number: 5 (lower is better)
Translates to: GCRCGGLTKLFKTLSHPQNLELS*DGRLFF
Trigger: GAAGAACAACCTCCCATCCAACGACAGCTCCAAGTT...TTGGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGAGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCCTCCACCCATTTGAGCTaGCACATATCTCCTGAAAAA +
Preference number: 5 (lower is better)
Translates to: RGTGPLPAFLKAAPLSPSSTHLS*HISPEK
Trigger: TTTTTCAGGAGATATGTGCAAGCTCAAATGGGTGGA...GGAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AAGAGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCGAAATCTCCACCCATTaGAGCTTGCACATATCTCCT +
Preference number: 5 (lower is better)
Translates to: KRDRATACFLEGSTLVSLEISTH*SLHISP
Trigger: AGGAGATATGTGCAAGCTCAAATGGGTGGAGATTTC...GAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGAGTTGCTGGGGAGTTTaGGGTTTCTCGGGGATGTCC +
Preference number: 5 (lower is better)
Translates to: GYGTEHRERQRLSKVVSWSCWGV*GFSGMS
Trigger: GGACATCCCCGAGAAACCCAAAACTCCCCAGCAACT...CCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCTGCAGCCTCCCGGGCCTaGTATTTAGCCTTCTTCTTC +
Preference number: 5 (lower is better)
Translates to: RQRLSKVVSWGDELCRGSAASRA*YLAFFF
Trigger: GAAGAAGAAGGCTAAATACAAGGCCCGGGAGGCTGC...AGAGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CAGGGAAGAGGGACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTTCCTTCTTCTCCATGTaGTTCCAAGTCATCTCCATG +
Preference number: 5 (lower is better)
Translates to: QGRGTGPLPAFLKAAPLSSFFSM*FQVISM
Trigger: CATGGAGATGACTTGGAACAACATGGAGAAGAAGGA...AGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGTCCCTCTTCCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CCAGTCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCTCTCTCATATCGTTTTaGGTCTTCTGCTGCCTTCTT +
Preference number: 5 (lower is better)
Translates to: PVHCPCRNCKCRRGAGWASLISF*VFCCLL
Trigger: AAGAAGGCAGCAGAAGACCAAAAACGATATGAGAGA...GGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGACTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp TCCATTGTCCATGCCGGAACTGCAAATGCAGAAGAGGGGCAGGGTGGGCCCGTCTCTCTCATATCGTTTTaGGTCTTCTGCTGCCTTCTT +
Preference number: 5 (lower is better)
Translates to: SIVHAGTANAEEGQGGPVSLISF*VFCCLL
Trigger: AAGAAGGCAGCAGAAGACCAAAAACGATATGAGAGA...GACGGGCCCACCCTGCCCCTCTTCTGCATTTGCAGTTCCGGCATGGACAATGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CCCCCGAACATCCACCTTGCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTGGAACTTCATCTTCTaGGAAGAGTTTGTAGCAGCT +
Preference number: 5 (lower is better)
Translates to: PPNIHLAAGCRCGGLTKLWNFIF*EEFVAA
Trigger: AGCTGCTACAAACTCTTCCAAGAAGATGAAGTTCCA...GAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGCAAGGTGGATGTTCGGGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAACTTGTACTGCCTCTGTaGCTCCTCCGCCAGCTTCTT +
Preference number: 5 (lower is better)
Translates to: RKKVGKSGGYGTEHRERQLVLPL*LLRQLL
Trigger: AAGAAGCTGGCGGAGGAGCAACAGAGGCAGTACAAG...TTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCTTGGAGATGTATTCTTaGTATGCTGCGCGGTCCTGG +
Preference number: 5 (lower is better)
Translates to: SGEVWRVRDRTQGETKVVLEMYS*YAARSW
Trigger: CCAGGACCGCGCAGCATACAAAGAATACATCTCCAA...GACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp ACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCCAGTTCATTTGGGCCTCGGAGCTaGGTCATGTTCTTACGTTTA +
Preference number: 5 (lower is better)
Translates to: TGPLPAFLKAAPLSPSSSFGPRS*VMFLRL
Trigger: TAAACGTAAGAACATGACCAAGCTCCGAGGCCCAAA...TGAACTGGAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCTCTCCTCTGTGGTTTTGAACTaGGAGCTGTCGTTGGATGGG +
Preference number: 5 (lower is better)
Translates to: KGCQRLSVGEMSSAGALSSVVLN*ELSLDG
Trigger: CCCATCCAACGACAGCTCCAAGTTCAAAACCACAGA...GGAGAGAGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp TCTGCATACAGGGGTGGCGGCAGGAAAGAGGGAGCAGACCTGAGAACTCAAAGGGAAATCTCCACCCATTaGAGCTTGCACATATCTCCT +
Preference number: 5 (lower is better)
Translates to: SAYRGGGRKEGADLRTQREISTH*SLHISP
Trigger: AGGAGATATGTGCAAGCTCAAATGGGTGGAGATTTC...CCTTTGAGTTCTCAGGTCTGCTCCCTCTTTCCTGCCGCCACCCCTGTATGCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGAGTTGCTGGGGAGTTTaGGGTTTCTCGGGGATGTCC +
Preference number: 5 (lower is better)
Translates to: RVRDRTQGETKVVKGCQLSCWGV*GFSGMS
Trigger: GGACATCCCCGAGAAACCCAAAACTCCCCAGCAACT...CAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCTTCATAGGAGGTTTCTaGGGTTCTCCCTGGAACTTC +
Preference number: 5 (lower is better)
Translates to: SGEVWRVRDRTQGETKVVFIGGF*GSPWNF
Trigger: GAAGTTCCAGGGAGAACCCAAGAAACCTCCTATGAA...GACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CCAACATGTCCCACCCCCACAGCCCTACCTCTAAGAATTTTCCAATACTTGCAGCTTGTACTGCCTCTGTaGCTCCTCCGCCAGCTTCTT +
Preference number: 5 (lower is better)
Translates to: PTCPTPTALPLRIFQYLQLVLPL*LLRQLL
Trigger: AAGAAGCTGGCGGAGGAGCAACAGAGGCAGTACAAG...CTGCAAGTATTGGAAAATTCTTAGAGGTAGGGCTGTGGGGGTGGGACATGTTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CTTGCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCTTGGAGATGTATTCTTaGTATGCTGCGCGGTCCTGG +
Preference number: 5 (lower is better)
Translates to: LAAGCRCGGLTKLFKTLSLEMYS*YAARSW
Trigger: CCAGGACCGCGCAGCATACAAAGAATACATCTCCAA...GGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGCAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CTCACGTGTGTGCACATCACACACACAGCCTCACACACACACACACACACACACTTGGAGATGTATTCTTaGTATGCTGCGCGGTCCTGG +
Preference number: 5 (lower is better)
Translates to: LTCVHITHTASHTHTHTHLEMYS*YAARSW
Trigger: CCAGGACCGCGCAGCATACAAAGAATACATCTCCAA...GTGTGTGTGTGTGTGTGTGTGTGAGGCTGTGTGTGTGATGTGCACACACGTGAG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTAACTTGGAGCTGTCGTaGGATGGGAGGTTGTTCTTC +
Preference number: 5 (lower is better)
Translates to: RDKGCQRLSVGEMSSAGANLELS*DGRLFF
Trigger: GAAGAACAACCTCCCATCCAACGACAGCTCCAAGTT...AGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGAACTTGGAGCTGTCGTaGGATGGGAGGTTGTTCTTC +
Preference number: 5 (lower is better)
Translates to: RKKESGEVWRVRDRTQGENLELS*DGRLFF
Trigger: GAAGAACAACCTCCCATCCAACGACAGCTCCAAGTT...CTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGTCTGTGGTTTTGAACTaGGAGCTGTCGTTGGATGGG +
Preference number: 5 (lower is better)
Translates to: GYGTEHRERQRLSKVVSWSVVLN*ELSLDG
Trigger: CCCATCCAACGACAGCTCCAAGTTCAAAACCACAGA...CCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAATCTGTGGTTTTGAACTaGGAGCTGTCGTTGGATGGG +
Preference number: 5 (lower is better)
Translates to: RKKVGKSGGYGTEHRERQSVVLN*ELSLDG
Trigger: CCCATCCAACGACAGCTCCAAGTTCAAAACCACAGA...TTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp ACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCCAGTTCATCCACCCATTTGAGCTaGCACATATCTCCTGAAAAA +
Preference number: 5 (lower is better)
Translates to: TGPLPAFLKAAPLSPSSSSTHLS*HISPEK
Trigger: TTTTTCAGGAGATATGTGCAAGCTCAAATGGGTGGA...TGAACTGGAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAGGGATGTCCGACTTCTaGGCATTCTGGATAAGGTCA +
Preference number: 5 (lower is better)
Translates to: RKKVGKSGGYGTEHRERQGMSDF*AFWIRS
Trigger: TGACCTTATCCAGAATGCCAAGAAGTCGGACATCCC...TTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGGATGTCCGACTTCTaGGCATTCTGGATAAGGTCA +
Preference number: 5 (lower is better)
Translates to: ERKWGSLEGTGQNTGRDKGMSDF*AFWIRS
Trigger: TGACCTTATCCAGAATGCCAAGAAGTCGGACATCCC...TTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp ACAGGGCCACTGCCTGCTTTCTTGAAGGCAGCACCCTTGTCTCCCTCCAGTTCATGGAACTTCATCTTCTaGGAAGAGTTTGTAGCAGCT +
Preference number: 5 (lower is better)
Translates to: TGPLPAFLKAAPLSPSSSWNFIF*EEFVAA
Trigger: AGCTGCTACAAACTCTTCCAAGAAGATGAAGTTCCA...TGAACTGGAGGGAGACAAGGGTGCTGCCTTCAAGAAAGCAGGCAGTGGCCCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCCCCTGGAACTTCATCTTCTaGGAAGAGTTTGTAGCAGCT +
Preference number: 5 (lower is better)
Translates to: QAAGVEVSPNSLRLSPTPWNFIF*EEFVAA
Trigger: AGCTGCTACAAACTCTTCCAAGAAGATGAAGTTCCA...GGGGGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGTTCATAGGAGGTTTCTaGGGTTCTCCCTGGAACTTC +
Preference number: 5 (lower is better)
Translates to: GKSGGYGTEHRERQRLSKFIGGF*GSPWNF
Trigger: GAAGTTCCAGGGAGAACCCAAGAAACCTCCTATGAA...CTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGTTGGAGATGTATTCTTaGTATGCTGCGCGGTCCTGG +
Preference number: 5 (lower is better)
Translates to: GTGQNTGRDKGCQRLSVGLEMYS*YAARSW
Trigger: CCAGGACCGCGCAGCATACAAAGAATACATCTCCAA...CCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGTTTGGGCCTCGGAGCTaGGTCATGTTCTTACGTTTA +
Preference number: 5 (lower is better)
Translates to: GKSGGYGTEHRERQRLSKFGPRS*VMFLRL
Trigger: TAAACGTAAGAACATGACCAAGCTCCGAGGCCCAAA...CTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCTCTCCTTTGGGCCTCGGAGCTaGGTCATGTTCTTACGTTTA +
Preference number: 5 (lower is better)
Translates to: KGCQRLSVGEMSSAGALSFGPRS*VMFLRL
Trigger: TAAACGTAAGAACATGACCAAGCTCCGAGGCCCAAA...GGAGAGAGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCAACTTGGAGCTGTCGTaGGATGGGAGGTTGTTCTTC +
Preference number: 5 (lower is better)
Translates to: EHRERQRLSKVVSWGDELNLELS*DGRLFF
Trigger: GAAGAACAACCTCCCATCCAACGACAGCTCCAAGTT...GAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp ACTGTTGTGTTGACCCCTCCACACGCCCAATATGGAGTCCCTTTTGTCTCTCTATCTGTGGTTTTGAACTaGGAGCTGTCGTTGGATGGG +
Preference number: 5 (lower is better)
Translates to: TVVLTPPHAQYGVPFVSLSVVLN*ELSLDG
Trigger: CCCATCCAACGACAGCTCCAAGTTCAAAACCACAGA...TAGAGAGACAAAAGGGACTCCATATTGGGCGTGTGGAGGGGTCAACACAACAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000128016.2
CDS-3UTR CAA 90 bp GCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACTCCACCCATTTGAGCTaGCACATATCTCCTGAAAAA +
Preference number: 5 (lower is better)
Translates to: AAGCRCGGLTKLFKTLSHSTHLS*HISPEK
Trigger: TTTTTCAGGAGATATGTGCAAGCTCAAATGGGTGGA...GTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGAAATCTCCACCCATTaGAGCTTGCACATATCTCCT +
Preference number: 5 (lower is better)
Translates to: GRDKGCQRLSVGEMSSAGEISTH*SLHISP
Trigger: AGGAGATATGTGCAAGCTCAAATGGGTGGAGATTTC...CCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CTCACGTGTGTGCACATCACACACACAGCCTCACACACACACACACACACACACGAAATCTCCACCCATTaGAGCTTGCACATATCTCCT +
Preference number: 5 (lower is better)
Translates to: LTCVHITHTASHTHTHTHEISTH*SLHISP
Trigger: AGGAGATATGTGCAAGCTCAAATGGGTGGAGATTTC...GTGTGTGTGTGTGTGTGTGTGTGAGGCTGTGTGTGTGATGTGCACACACGTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCGGGATGTCCGACTTCTaGGCATTCTGGATAAGGTCA +
Preference number: 5 (lower is better)
Translates to: EHRERQRLSKVVSWGDELGMSDF*AFWIRS
Trigger: TGACCTTATCCAGAATGCCAAGAAGTCGGACATCCC...GAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GAAAGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGGGATGTCCGACTTCTaGGCATTCTGGATAAGGTCA +
Preference number: 5 (lower is better)
Translates to: ERKKESGEVWRVRDRTQGGMSDF*AFWIRS
Trigger: TGACCTTATCCAGAATGCCAAGAAGTCGGACATCCC...TCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTTCATAGGAGGTTTCTaGGGTTCTCCCTGGAACTTC +
Preference number: 5 (lower is better)
Translates to: GGYGTEHRERQRLSKVVSFIGGF*GSPWNF
Trigger: GAAGTTCCAGGGAGAACCCAAGAAACCTCCTATGAA...ACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGTTCATAGGAGGTTTCTaGGGTTCTCCCTGGAACTTC +
Preference number: 5 (lower is better)
Translates to: GTGQNTGRDKGCQRLSVGFIGGF*GSPWNF
Trigger: GAAGTTCCAGGGAGAACCCAAGAAACCTCCTATGAA...CCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCCACCCATTTGAGCTaGCACATATCTCCTGAAAAA +
Preference number: 5 (lower is better)
Translates to: ERQRLSKVVSWGDELCRGSTHLS*HISPEK
Trigger: TTTTTCAGGAGATATGTGCAAGCTCAAATGGGTGGA...GCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCTCTCCTCCACCCATTTGAGCTaGCACATATCTCCTGAAAAA +
Preference number: 5 (lower is better)
Translates to: KGCQRLSVGEMSSAGALSSTHLS*HISPEK
Trigger: TTTTTCAGGAGATATGTGCAAGCTCAAATGGGTGGA...GGAGAGAGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGTCCACCCATTTGAGCTaGCACATATCTCCTGAAAAA +
Preference number: 5 (lower is better)
Translates to: GRDKGCQRLSVGEMSSAGSTHLS*HISPEK
Trigger: TTTTTCAGGAGATATGTGCAAGCTCAAATGGGTGGA...CCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGCAGGGGCTCTGAAATCTCCACCCATTaGAGCTTGCACATATCTCCT +
Preference number: 5 (lower is better)
Translates to: RQRLSKVVSWGDELCRGSEISTH*SLHISP
Trigger: AGGAGATATGTGCAAGCTCAAATGGGTGGAGATTTC...AGAGCCCCTGCAGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GCTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACTTCTCTGGAAGTTCCTaGTATTTCTTAGACAGGATC +
Preference number: 5 (lower is better)
Translates to: AAGCRCGGLTKLFKTLSHFSGSS*YFLDRI
Trigger: GATCCTGTCTAAGAAATACAAGGAACTTCCAGAGAA...GTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CTGCAGGCTGCAGGTGTGGAGGTCTCACCAAACTCTTTAAGACTCTCTCCCACCTTCTCTGGAAGTTCCTaGTATTTCTTAGACAGGATC +
Preference number: 5 (lower is better)
Translates to: LQAAGVEVSPNSLRLSPTFSGSS*YFLDRI
Trigger: GATCCTGTCTAAGAAATACAAGGAACTTCCAGAGAA...GGTGGGAGAGAGTCTTAAAGAGTTTGGTGAGACCTCCACACCTGCAGCCTGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CCTTGGTTTGTTCCTGCTAGGGACACCATCTCCCAGGCCTCTACCGACCCTTTTTTCTCTGGAAGTTCCTaGTATTTCTTAGACAGGATC +
Preference number: 5 (lower is better)
Translates to: PWFVPARDTISQASTDPFFSGSS*YFLDRI
Trigger: GATCCTGTCTAAGAAATACAAGGAACTTCCAGAGAA...AAAAGGGTCGGTAGAGGCCTGGGAGATGGTGTCCCTAGCAGGAACAAACCAAGG
49% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGTCCTTCTTCTCCATGTaGTTCCAAGTCATCTCCATG +
Preference number: 5 (lower is better)
Translates to: GYGTEHRERQRLSKVVSWSFFSM*FQVISM
Trigger: CATGGAGATGACTTGGAACAACATGGAGAAGAAGGA...CCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGTCCTTCTTCTCCATGTaGTTCCAAGTCATCTCCATG +
Preference number: 5 (lower is better)
Translates to: RKKESGEVWRVRDRTQGESFFSM*FQVISM
Trigger: CATGGAGATGACTTGGAACAACATGGAGAAGAAGGA...CTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAATCCTTCTTCTCCATGTaGTTCCAAGTCATCTCCATG +
Preference number: 5 (lower is better)
Translates to: ERKWGSLEGTGQNTGRDKSFFSM*FQVISM
Trigger: CATGGAGATGACTTGGAACAACATGGAGAAGAAGGA...TTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGTCTCTCATATCGTTTTaGGTCTTCTGCTGCCTTCTT +
Preference number: 5 (lower is better)
Translates to: GKSGGYGTEHRERQRLSKSLISF*VFCCLL
Trigger: AAGAAGGCAGCAGAAGACCAAAAACGATATGAGAGA...CTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGTGGAACTTCATCTTCTaGGAAGAGTTTGTAGCAGCT +
Preference number: 5 (lower is better)
Translates to: GKSGGYGTEHRERQRLSKWNFIF*EEFVAA
Trigger: AGCTGCTACAAACTCTTCCAAGAAGATGAAGTTCCA...CTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp TCTTTGCTTTCAAGAGGGACTGGCAGCTGGGCTGCAGCCTACTTTCTGTGGAGATGGAACTTCATCTTCTaGGAAGAGTTTGTAGCAGCT +
Preference number: 5 (lower is better)
Translates to: SLLSRGTGSWAAAYFLWRWNFIF*EEFVAA
Trigger: AGCTGCTACAAACTCTTCCAAGAAGATGAAGTTCCA...TCTCCACAGAAAGTAGGCTGCAGCCCAGCTGCCAGTCCCTCTTGAAAGCAAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTTCATAGGAGGTTTCTaGGGTTCTCCCTGGAACTTC +
Preference number: 5 (lower is better)
Translates to: EHRERQRLSKVVSWGDELFIGGF*GSPWNF
Trigger: GAAGTTCCAGGGAGAACCCAAGAAACCTCCTATGAA...GAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTTTGGAGATGTATTCTTaGTATGCTGCGCGGTCCTGG +
Preference number: 5 (lower is better)
Translates to: NTGRDKGCQRLSVGEMSSLEMYS*YAARSW
Trigger: CCAGGACCGCGCAGCATACAAAGAATACATCTCCAA...AGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTTTTGGGCCTCGGAGCTaGGTCATGTTCTTACGTTTA +
Preference number: 5 (lower is better)
Translates to: KSGGYGTEHRERQRLSKVFGPRS*VMFLRL
Trigger: TAAACGTAAGAACATGACCAAGCTCCGAGGCCCAAA...AACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CCAAAACAACTACACTGTTGTGTTGACCCCTCCACACGCCCAATATGGAGTCCCTCCACCCATTTGAGCTaGCACATATCTCCTGAAAAA +
Preference number: 5 (lower is better)
Translates to: PKQLHCCVDPSTRPIWSPSTHLS*HISPEK
Trigger: TTTTTCAGGAGATATGTGCAAGCTCAAATGGGTGGA...GGGACTCCATATTGGGCGTGTGGAGGGGTCAACACAACAGTGTAGTTGTTTTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128016.2
CDS-3UTR CAA 90 bp AAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTTCTCTGGAAGTTCCTaGTATTTCTTAGACAGGATC +
Preference number: 5 (lower is better)
Translates to: KVGKSGGYGTEHRERQRLFSGSS*YFLDRI
Trigger: GATCCTGTCTAAGAAATACAAGGAACTTCCAGAGAA...CAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTCCTTCTTCTCCATGTaGTTCCAAGTCATCTCCATG +
Preference number: 5 (lower is better)
Translates to: EHRERQRLSKVVSWGDELSFFSM*FQVISM
Trigger: CATGGAGATGACTTGGAACAACATGGAGAAGAAGGA...GAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGTCTCTCATATCGTTTTaGGTCTTCTGCTGCCTTCTT +
Preference number: 5 (lower is better)
Translates to: KESGEVWRVRDRTQGETKSLISF*VFCCLL
Trigger: AAGAAGGCAGCAGAAGACCAAAAACGATATGAGAGA...CTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTCTCTCATATCGTTTTaGGTCTTCTGCTGCCTTCTT +
Preference number: 5 (lower is better)
Translates to: EVWRVRDRTQGETKVVKGSLISF*VFCCLL
Trigger: AAGAAGGCAGCAGAAGACCAAAAACGATATGAGAGA...ACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGTCTCTCATATCGTTTTaGGTCTTCTGCTGCCTTCTT +
Preference number: 5 (lower is better)
Translates to: RKKESGEVWRVRDRTQGESLISF*VFCCLL
Trigger: AAGAAGGCAGCAGAAGACCAAAAACGATATGAGAGA...CTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGAACTTCATCTTCTaGGAAGAGTTTGTAGCAGCT +
Preference number: 5 (lower is better)
Translates to: GGYGTEHRERQRLSKVVSWNFIF*EEFVAA
Trigger: AGCTGCTACAAACTCTTCCAAGAAGATGAAGTTCCA...ACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CACACACACACACACACACACACACACACACACACACACACACTCTTCTCTCTCTCCACCCATTTGAGCTaGCACATATCTCCTGAAAAA +
Preference number: 5 (lower is better)
Translates to: HTHTHTHTHTHTHTLFSLSTHLS*HISPEK
Trigger: TTTTTCAGGAGATATGTGCAAGCTCAAATGGGTGGA...GAGAGAGAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGGGGAGATGAGCTCTGAAATCTCCACCCATTaGAGCTTGCACATATCTCCT +
Preference number: 5 (lower is better)
Translates to: NTGRDKGCQRLSVGEMSSEISTH*SLHISP
Trigger: AGGAGATATGTGCAAGCTCAAATGGGTGGAGATTTC...AGAGCTCATCTCCCCAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAATTCTCTGGAAGTTCCTaGTATTTCTTAGACAGGATC +
Preference number: 5 (lower is better)
Translates to: ERKWGSLEGTGQNTGRDKFSGSS*YFLDRI
Trigger: GATCCTGTCTAAGAAATACAAGGAACTTCCAGAGAA...TTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp CACTGTTGTGTTGACCCCTCCACACGCCCAATATGGAGTCCCTTTTGTCTCTCTTTCTCTGGAAGTTCCTaGTATTTCTTAGACAGGATC +
Preference number: 5 (lower is better)
Translates to: HCCVDPSTRPIWSPFCLSFSGSS*YFLDRI
Trigger: GATCCTGTCTAAGAAATACAAGGAACTTCCAGAGAA...AGAGAGACAAAAGGGACTCCATATTGGGCGTGTGGAGGGGTCAACACAACAGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128016.2
CDS-3UTR CAA 90 bp GAAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTTCTCTGGAAGTTCCTaGTATTTCTTAGACAGGATC +
Preference number: 5 (lower is better)
Translates to: EVWRVRDRTQGETKVVKGFSGSS*YFLDRI
Trigger: GATCCTGTCTAAGAAATACAAGGAACTTCCAGAGAA...ACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AATCTTCTCTTTAGGAATCTCCATCACACAGTCCAGGCAAATGTCTTTGCTTTCAGTTGCTGGGGAGTTTaGGGTTTCTCGGGGATGTCC +
Preference number: 5 (lower is better)
Translates to: NLLFRNLHHTVQANVFAFSCWGV*GFSGMS
Trigger: GGACATCCCCGAGAAACCCAAAACTCCCCAGCAACT...GAAAGCAAAGACATTTGCCTGGACTGTGTGATGGAGATTCCTAAAGAGAAGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AAGTCTGGAGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTTCTCTCATATCGTTTTaGGTCTTCTGCTGCCTTCTT +
Preference number: 5 (lower is better)
Translates to: KSGGYGTEHRERQRLSKVSLISF*VFCCLL
Trigger: AAGAAGGCAGCAGAAGACCAAAAACGATATGAGAGA...AACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCTCCAGACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AGGGTACGGGACAGAACACAGGGAGAGACAAAGGTTGTCAAAGGTTGTCAGTTGTTCTCTGGAAGTTCCTaGTATTTCTTAGACAGGATC +
Preference number: 5 (lower is better)
Translates to: RVRDRTQGETKVVKGCQLFSGSS*YFLDRI
Trigger: GATCCTGTCTAAGAAATACAAGGAACTTCCAGAGAA...CAACTGACAACCTTTGACAACCTTTGTCTCTCCCTGTGTTCTGTCCCGTACCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp GAAAGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACAGGGATTCTCTGGAAGTTCCTaGTATTTCTTAGACAGGATC +
Preference number: 5 (lower is better)
Translates to: ERKKESGEVWRVRDRTQGFSGSS*YFLDRI
Trigger: GATCCTGTCTAAGAAATACAAGGAACTTCCAGAGAA...TCCCTGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS-3UTR CAA 90 bp AAAAGAAAGAAAGAAAGAAAGTGGGGAAGTCTGGAGGGTACGGGACAGAACACATCCTTCTTCTCCATGTaGTTCCAAGTCATCTCCATG +
Preference number: 5 (lower is better)
Translates to: KRKKERKWGSLEGTGQNTSFFSM*FQVISM
Trigger: CATGGAGATGACTTGGAACAACATGGAGAAGAAGGA...TGTGTTCTGTCCCGTACCCTCCAGACTTCCCCACTTTCTTTCTTTCTTTCTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS CAA 72 bp CAGATCTCCTCAGCCCTCTTGGGCGACTCCGGCAGCTaGCCCCTATCTTCACGCTCCCCGCCCGGCTTCCTC +
Preference number: 6 (lower is better)
Translates to: QISSALLGDSGS*PLSSRSPPGFL
Trigger: GAGGAAGCCGGGCGGGGAGCGTGAAGATAGGGGCAAGCTGCCGGAGTCGCCCAAGAGGGCTGAGGAGATCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS CAA 90 bp CTCTGCTGCCAGATCTCCTCAGCCCTCTTGGGCGACTCCGGCAGCTaGCCCCTATCTTCACGCTCCCCGCCCGGCTTCCTCTCAGACTGC +
Preference number: 6 (lower is better)
Translates to: LCCQISSALLGDSGS*PLSSRSPPGFLSDC
Trigger: GCAGTCTGAGAGGAAGCCGGGCGGGGAGCGTGAAGATAGGGGCAAGCTGCCGGAGTCGCCCAAGAGGGCTGAGGAGATCTGGCAGCAGAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS GCA 72 bp AGATCTCCTCAGCCCTCTTGGGCGACTCCGGCAGCTTaGCCCTATCTTCACGCTCCCCGCCCGGCTTCCTCT +
Preference number: 6 (lower is better)
Translates to: RSPQPSWATPAA*PYLHAPRPASS
Trigger: AGAGGAAGCCGGGCGGGGAGCGTGAAGATAGGGGCAAGCTGCCGGAGTCGCCCAAGAGGGCTGAGGAGATCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS CAA 90 bp CTCCTCGTCGTCCTCCTCCTCCTCATCGTCATCCTCCTCGGACTCTaGGACTGCAGGGTGGTCCGGCTAGACTTGGGGTTTGGGCCTCGG +
Preference number: 6 (lower is better)
Translates to: LLVVLLLLIVILLGL*DCRVVRLDLGFGPR
Trigger: CCGAGGCCCAAACCCCAAGTCTAGCCGGACCACCCTGCAGTCCAAGAGTCCGAGGAGGATGACGATGAGGAGGAGGAGGACGACGAGGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006754.14
CDS GCA 72 bp CTATCTTCACGCTCCCCGCCCGGCTTCCTCTCAGACTaGGCCTTCAGCGCAGCCTCCCGGGCCTTGTATTTA +
Preference number: 6 (lower is better)
Translates to: LSSRSPPGFLSD*AFSAASRALYL
Trigger: TAAATACAAGGCCCGGGAGGCTGCGCTGAAGGCGCAGTCTGAGAGGAAGCCGGGCGGGGAGCGTGAAGATAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS GCA 72 bp CTCCTCCTCATCGTCATCCTCCTCGGACTCTTGGACTaGAGGGTGGTCCGGCTAGACTTGGGGTTTGGGCCT +
Preference number: 6 (lower is better)
Translates to: LLLIVILLGLLD*RVVRLDLGFGP
Trigger: AGGCCCAAACCCCAAGTCTAGCCGGACCACCCTGCAGTCCAAGAGTCCGAGGAGGATGACGATGAGGAGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006754.14
CDS CAA 90 bp CTTCGCTTCTCCTCAGAGAAGATGAACATAGCAGACACAGGCCGCTaGGGCTTCTCGGAGCCACCCTTGCCACCTTCCTGTGAAGGCTTC +
Preference number: 6 (lower is better)
Translates to: LRFSSEKMNIADTGR*GFSEPPLPPSCEGF
Trigger: GAAGCCTTCACAGGAAGGTGGCAAGGGTGGCTCCGAGAAGCCCAAGCGGCCTGTGTCTGCTATGTTCATCTTCTCTGAGGAGAAGCGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS CAA 72 bp TCCTCAGAGAAGATGAACATAGCAGACACAGGCCGCTaGGGCTTCTCGGAGCCACCCTTGCCACCTTCCTGT +
Preference number: 6 (lower is better)
Translates to: SSEKMNIADTGR*GFSEPPLPPSC
Trigger: ACAGGAAGGTGGCAAGGGTGGCTCCGAGAAGCCCAAGCGGCCTGTGTCTGCTATGTTCATCTTCTCTGAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS CAA 72 bp CTCTCAGACTGCGCCTTCAGCGCAGCCTCCCGGGCCTaGTATTTAGCCTTCTTCTTCTCGGACAAGTCGTTC +
Preference number: 6 (lower is better)
Translates to: LSDCAFSAASRA*YLAFFFSDKSF
Trigger: GAACGACTTGTCCGAGAAGAAGAAGGCTAAATACAAGGCCCGGGAGGCTGCGCTGAAGGCGCAGTCTGAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS CAA 72 bp GGAGACAGGCTCTTGACCCAGAGGTCCAAGTGCACCTaGTACTGCCTCTGTTGCTCCTCCGCCAGCTTCTTA +
Preference number: 6 (lower is better)
Translates to: GDRLLTQRSKCT*YCLCCSSASFL
Trigger: TAAGAAGCTGGCGGAGGAGCAACAGAGGCAGTACAAGGTGCACTTGGACCTCTGGGTCAAGAGCCTGTCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS CAA 72 bp TCGGAGCCACCCTTGCCACCTTCCTGTGAAGGCTTCTaGGAGGCCGGACTGGTGGTTTGCTTCTTATTGATG +
Preference number: 6 (lower is better)
Translates to: SEPPLPPSCEGF*EAGLVVCFLLM
Trigger: CATCAATAAGAAGCAAACCACCAGTCCGGCCTCCAAGAAGCCTTCACAGGAAGGTGGCAAGGGTGGCTCCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS GCA 72 bp TCGCTTTCGGAGAGCTCAGGTCGTTCCTCCTGTAGCTaGCTTCGCTTCTCCTCAGAGAAGATGAACATAGCA +
Preference number: 6 (lower is better)
Translates to: SLSESSGRSSCS*LRFSSEKMNIA
Trigger: TGCTATGTTCATCTTCTCTGAGGAGAAGCGAAGGCAGCTACAGGAGGAACGACCTGAGCTCTCCGAAAGCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8
CDS TCA 72 bp AGAAATCTCCACCCATTTGAGCTTGCACATATCTCCTaGAAAATCCTTAAACGCAACTTTTTCCCAATCCAT +
Preference number: 6 (lower is better)
Translates to: RNLHPFELAHIS*KILKRNFFPIH
Trigger: ATGGATTGGGAAAAAGTTGCGTTTAAGGATTTTTCAGGAGATATGTGCAAGCTCAAATGGGTGGAGATTTCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 11 transcripts:
ENSMUST00000006754.14
ENSMUST00000079589.11
ENSMUST00000107115.8
ENSMUST00000107117.9
ENSMUST00000107119.9
ENSMUST00000107123.10
ENSMUST00000128016.2
ENSMUST00000146896.9
ENSMUST00000173870.8
ENSMUST00000174302.8
ENSMUST00000178839.8