Pregenerated sensors for UBTD2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044949Ensembl transcript IDs: ENSMUST00000051053.5
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | AGAGTAAGAAATGGTAACAATAAAAAGGAGCCACGGGATCTTGGAAGAAGGCAACTGCCCGAAGAGTCGTaGTGGGCGCCCACGCACCCG | + |
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Preference number: 4 (lower is better) Translates to: RVRNGNNKKEPRDLGRRQLPEES*WAPTHP Trigger: CGGGTGCGTGGGCGCCCAGCACGACTCTTCGGGCAG...TTGCCTTCTTCCAAGATCCCGTGGCTCCTTTTTATTGTTACCATTTCTTACTCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS-3UTR TCA 90 bp | AGAAATGGTAACAATAAAAAGGAGCCACGGGATCTTGGAAGAAGGCAAGTCCAGTGCGGACCACGAGCCTaGGGTCTTTGCCTGTGGAGA | + |
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Preference number: 4 (lower is better) Translates to: RNGNNKKEPRDLGRRQVQCGPRA*GLCLWR Trigger: TCTCCACAGGCAAAGACCTCAGGCTCGTGGTCCGCA...CTGGACTTGCCTTCTTCCAAGATCCCGTGGCTCCTTTTTATTGTTACCATTTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS-3UTR GCA 90 bp | GCCTTAAGAGTAAGAAATGGTAACAATAAAAAGGAGCCACGGGATCTTGGAAGAAGAACCAGCGCTGGCTaGCTGGCTCCACGCCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: ALRVRNGNNKKEPRDLGRRTSAG*LAPRPL Trigger: CAGAGGGCGTGGAGCCAGGCAGCCAGCGCTGGTTCT...TCTTCCAAGATCCCGTGGCTCCTTTTTATTGTTACCATTTCTTACTCTTAAGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS-3UTR TCA 90 bp | GCCTTAAGAGTAAGAAATGGTAACAATAAAAAGGAGCCACGGGATCTTGGAAGACGTCCGAGTTCTCGTTaGGGCTGCCCGAAGAGTCGT | + |
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Preference number: 4 (lower is better) Translates to: ALRVRNGNNKKEPRDLGRRPSSR*GCPKSR Trigger: ACGACTCTTCGGGCAGCCTCAACGAGAACTCGGACG...TCTTCCAAGATCCCGTGGCTCCTTTTTATTGTTACCATTTCTTACTCTTAAGGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS-3UTR CCA 90 bp | AGAAATGGTAACAATAAAAAGGAGCCACGGGATCTTGGAAGAAGGCAAGTCCAGGCACCACATAGTCCTTaGGGATCTTCAGCTCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: RNGNNKKEPRDLGRRQVQAPHSP*GSSAPP Trigger: TGGAGGAGCTGAAGATCCCCAAGGACTATGTGGTGC...CTGGACTTGCCTTCTTCCAAGATCCCGTGGCTCCTTTTTATTGTTACCATTTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS-3UTR GCA 90 bp | AGAAATGGTAACAATAAAAAGGAGCCACGGGATCTTGGAAGAAGGCAAGTCCAGACTGGTGTTGGGGTTTaGACAGGCTGGCTCACTATA | + |
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Preference number: 4 (lower is better) Translates to: RNGNNKKEPRDLGRRQVQTGVGV*TGWLTI Trigger: TATAGTGAGCCAGCCTGTGCAAACCCCAACACCAGT...CTGGACTTGCCTTCTTCCAAGATCCCGTGGCTCCTTTTTATTGTTACCATTTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS-3UTR CCA 90 bp | GCCTTAAGAGTAAGAAATGGTAACAATAAAAAGGAGCCACGGGATCTTGGAAGAGGGGTTTGCACAGGCTaGCTCACTATAACCTGCACC | + |
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Preference number: 4 (lower is better) Translates to: ALRVRNGNNKKEPRDLGRGVCTG*LTITCT Trigger: GGTGCAGGTTATAGTGAGCCAGCCTGTGCAAACCCC...TCTTCCAAGATCCCGTGGCTCCTTTTTATTGTTACCATTTCTTACTCTTAAGGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS-3UTR TCA 90 bp | AGAAATGGTAACAATAAAAAGGAGCCACGGGATCTTGGAAGAAGGCAAGTCCAGTGTTTGCACCGTCAATaGTTGCCTGTGCCAGTTCAT | + |
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Preference number: 4 (lower is better) Translates to: RNGNNKKEPRDLGRRQVQCLHRQ*LPVPVH Trigger: ATGAACTGGCACAGGCAATCATTGACGGTGCAAACA...CTGGACTTGCCTTCTTCCAAGATCCCGTGGCTCCTTTTTATTGTTACCATTTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS-3UTR TCA 90 bp | GCCTTAAGAGTAAGAAATGGTAACAATAAAAAGGAGCCACGGGATCTTGGAAGAGCTTCATCTTATCCGTaGGAGGCCTGCCAGAGAAGA | + |
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Preference number: 4 (lower is better) Translates to: ALRVRNGNNKKEPRDLGRASSYP*EACQRR Trigger: TCTTCTCTGGCAGGCCTCTCACGGATAAGATGAAGC...TCTTCCAAGATCCCGTGGCTCCTTTTTATTGTTACCATTTCTTACTCTTAAGGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS-3UTR GCA 90 bp | AGAAATGGTAACAATAAAAAGGAGCCACGGGATCTTGGAAGAAGGCAAGTCCAGATTCATCCCTCTTGCTaGGCAGTTGTCCATCTGTCA | + |
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Preference number: 4 (lower is better) Translates to: RNGNNKKEPRDLGRRQVQIHPSC*AVVHLS Trigger: TGACAGATGGACAACTGCGCAGCAAGAGGGATGAAT...CTGGACTTGCCTTCTTCCAAGATCCCGTGGCTCCTTTTTATTGTTACCATTTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS-3UTR GCA 90 bp | AGAAATGGTAACAATAAAAAGGAGCCACGGGATCTTGGAAGAAGGCAAGTCCAGTGCACCGTCAATGATTaGCTGTGCCAGTTCATGATC | + |
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Preference number: 4 (lower is better) Translates to: RNGNNKKEPRDLGRRQVQCTVND*LCQFMI Trigger: GATCATGAACTGGCACAGGCAATCATTGACGGTGCA...CTGGACTTGCCTTCTTCCAAGATCCCGTGGCTCCTTTTTATTGTTACCATTTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS-3UTR CCA 90 bp | AGAGTAAGAAATGGTAACAATAAAAAGGAGCCACGGGATCTTGGAAGAAGGCAACCGGCCTTCAAAAGCTaGTGCAGTGTCCCAGAATTC | + |
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Preference number: 4 (lower is better) Translates to: RVRNGNNKKEPRDLGRRQPAFKS*CSVPEF Trigger: GAATTCTGGGACACTGCACCAGCTTTTGAAGGCCGG...TTGCCTTCTTCCAAGATCCCGTGGCTCCTTTTTATTGTTACCATTTCTTACTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS-3UTR TCA 90 bp | AGAAATGGTAACAATAAAAAGGAGCCACGGGATCTTGGAAGAAGGCAAGTCCAGGCCTGTGCCAGTTCATaGTCATTGCTTTCAAAAGCA | + |
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Preference number: 4 (lower is better) Translates to: RNGNNKKEPRDLGRRQVQACASS*SLLSKA Trigger: TGCTTTTGAAAGCAATGATCATGAACTGGCACAGGC...CTGGACTTGCCTTCTTCCAAGATCCCGTGGCTCCTTTTTATTGTTACCATTTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS-3UTR TCA 90 bp | AGAAATGGTAACAATAAAAAGGAGCCACGGGATCTTGGAAGAAGGCAAGTCCAGTTTCCTCTATCATGTTaGTTGGTGGTGCCAGGCAAT | + |
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Preference number: 4 (lower is better) Translates to: RNGNNKKEPRDLGRRQVQFPLSC*LVVPGN Trigger: ATTGCCTGGCACCACCAATCAACATGATAGAGGAAA...CTGGACTTGCCTTCTTCCAAGATCCCGTGGCTCCTTTTTATTGTTACCATTTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS-3UTR GCA 90 bp | AGAGTAAGAAATGGTAACAATAAAAAGGAGCCACGGGATCTTGGAAGAAGGCAAGCTTTCAAAAGCATGTaGAGCGGCCTTCAAGGCATC | + |
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Preference number: 4 (lower is better) Translates to: RVRNGNNKKEPRDLGRRQAFKSM*SGLQGI Trigger: GATGCCTTGAAGGCCGCTGCACATGCTTTTGAAAGC...TTGCCTTCTTCCAAGATCCCGTGGCTCCTTTTTATTGTTACCATTTCTTACTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS-3UTR GCA 90 bp | GCCTTAAGAGTAAGAAATGGTAACAATAAAAAGGAGCCACGGGATCTTGGAAGACATGTTGATTGGTGGTaGCAGGCAATAGACTGGCAG | + |
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Preference number: 4 (lower is better) Translates to: ALRVRNGNNKKEPRDLGRHVDWW*QAIDWQ Trigger: CTGCCAGTCTATTGCCTGGCACCACCAATCAACATG...TCTTCCAAGATCCCGTGGCTCCTTTTTATTGTTACCATTTCTTACTCTTAAGGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS-3UTR CCA 90 bp | AGAAATGGTAACAATAAAAAGGAGCCACGGGATCTTGGAAGAAGGCAAGTCCAGTATCATGTTGATTGGTaGTGCCAGGCAATAGACTGG | + |
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Preference number: 4 (lower is better) Translates to: RNGNNKKEPRDLGRRQVQYHVDW*CQAIDW Trigger: CCAGTCTATTGCCTGGCACCACCAATCAACATGATA...CTGGACTTGCCTTCTTCCAAGATCCCGTGGCTCCTTTTTATTGTTACCATTTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS-3UTR CCA 90 bp | AGAAATGGTAACAATAAAAAGGAGCCACGGGATCTTGGAAGAAGGCAAGTCCAGCTCTATCATGTTGATTaGTGGTGCCAGGCAATAGAC | + |
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Preference number: 4 (lower is better) Translates to: RNGNNKKEPRDLGRRQVQLYHVD*WCQAID Trigger: GTCTATTGCCTGGCACCACCAATCAACATGATAGAG...CTGGACTTGCCTTCTTCCAAGATCCCGTGGCTCCTTTTTATTGTTACCATTTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS-3UTR GCA 90 bp | GCCTTAAGAGTAAGAAATGGTAACAATAAAAAGGAGCCACGGGATCTTGGAAGAAGAATTCATCCCTCTTaGTGCGCAGTTGTCCATCTG | + |
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Preference number: 4 (lower is better) Translates to: ALRVRNGNNKKEPRDLGRRIHPS*CAVVHL Trigger: CAGATGGACAACTGCGCAGCAAGAGGGATGAATTCT...TCTTCCAAGATCCCGTGGCTCCTTTTTATTGTTACCATTTCTTACTCTTAAGGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS-3UTR GCA 90 bp | GCCTTAAGAGTAAGAAATGGTAACAATAAAAAGGAGCCACGGGATCTTGGAAGAGCCTTCAAAAGCTGGTaGAGTGTCCCAGAATTCATC | + |
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Preference number: 4 (lower is better) Translates to: ALRVRNGNNKKEPRDLGRAFKSW*SVPEFI Trigger: GATGAATTCTGGGACACTGCACCAGCTTTTGAAGGC...TCTTCCAAGATCCCGTGGCTCCTTTTTATTGTTACCATTTCTTACTCTTAAGGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS-3UTR GCA 90 bp | AGAAATGGTAACAATAAAAAGGAGCCACGGGATCTTGGAAGAAGGCAAGTCCAGCCAGTTCATGATCATTaGTTTCAAAAGCATGTGCAG | + |
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Preference number: 4 (lower is better) Translates to: RNGNNKKEPRDLGRRQVQPVHDH*FQKHVQ Trigger: CTGCACATGCTTTTGAAAGCAATGATCATGAACTGG...CTGGACTTGCCTTCTTCCAAGATCCCGTGGCTCCTTTTTATTGTTACCATTTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS-3UTR CCA 90 bp | GCCTTAAGAGTAAGAAATGGTAACAATAAAAAGGAGCCACGGGATCTTGGAAGATCCAGAATTGGGAGGTaGCTCAGGAATATCAAGAGT | + |
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Preference number: 4 (lower is better) Translates to: ALRVRNGNNKKEPRDLGRSRIGR*LRNIKS Trigger: ACTCTTGATATTCCTGAGCCACCTCCCAATTCTGGA...TCTTCCAAGATCCCGTGGCTCCTTTTTATTGTTACCATTTCTTACTCTTAAGGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS-3UTR CCA 90 bp | AGAGTAAGAAATGGTAACAATAAAAAGGAGCCACGGGATCTTGGAAGAAGGCAAATTCGTGTCCAGAATTaGGAGGTGGCTCAGGAATAT | + |
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Preference number: 4 (lower is better) Translates to: RVRNGNNKKEPRDLGRRQIRVQN*EVAQEY Trigger: ATATTCCTGAGCCACCTCCCAATTCTGGACACGAAT...TTGCCTTCTTCCAAGATCCCGTGGCTCCTTTTTATTGTTACCATTTCTTACTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS-3UTR GCA 90 bp | AGAGTAAGAAATGGTAACAATAAAAAGGAGCCACGGGATCTTGGAAGAAGGCAAGTCAATGATTGCCTGTaGCAGTTCATGATCATTGCT | + |
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Preference number: 4 (lower is better) Translates to: RVRNGNNKKEPRDLGRRQVNDCL*QFMIIA Trigger: AGCAATGATCATGAACTGGCACAGGCAATCATTGAC...TTGCCTTCTTCCAAGATCCCGTGGCTCCTTTTTATTGTTACCATTTCTTACTCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS CCA 90 bp | AGCTTCATCTTATCCGTGAGAGGCCTGCCAGAGAAGAACCAGCGCTaGCTGCCTGGCTCCACGCCCTCTGTGGCGTGTAAGCGCCTCTTC | + |
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Preference number: 5 (lower is better) Translates to: SFILSVRGLPEKNQR*LPGSTPSVACKRLF Trigger: GAAGAGGCGCTTACACGCCACAGAGGGCGTGGAGCCAGGCAGCCAGCGCTGGTTCTTCTCTGGCAGGCCTCTCACGGATAAGATGAAGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS TCA 90 bp | CATAGTCCTTGGGGATCTTCAGCTCCTCCAGCTTCATCTTATCCGTaGGAGGCCTGCCAGAGAAGAACCAGCGCTGGCTGCCTGGCTCCA | + |
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Preference number: 5 (lower is better) Translates to: HSPWGSSAPPASSYP*EACQRRTSAGCLAP Trigger: TGGAGCCAGGCAGCCAGCGCTGGTTCTTCTCTGGCAGGCCTCTCACGGATAAGATGAAGCTGGAGGAGCTGAAGATCCCCAAGGACTATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS-3UTR CAA 90 bp | AGAGTAAGAAATGGTAACAATAAAAAGGAGCCACGGGATCTTGGAAGAAGGCAACCGTCCGAGTTCTCGTaGAGGCTGCCCGAAGAGTCG | + |
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Preference number: 5 (lower is better) Translates to: RVRNGNNKKEPRDLGRRQPSEFS*RLPEES Trigger: CGACTCTTCGGGCAGCCTCAACGAGAACTCGGACGG...TTGCCTTCTTCCAAGATCCCGTGGCTCCTTTTTATTGTTACCATTTCTTACTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS-3UTR CAA 90 bp | AGAAATGGTAACAATAAAAAGGAGCCACGGGATCTTGGAAGAAGGCAAGTCCAGCACTGGTGTTGGGGTTaGCACAGGCTGGCTCACTAT | + |
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Preference number: 5 (lower is better) Translates to: RNGNNKKEPRDLGRRQVQHWCWG*HRLAHY Trigger: ATAGTGAGCCAGCCTGTGCAAACCCCAACACCAGTG...CTGGACTTGCCTTCTTCCAAGATCCCGTGGCTCCTTTTTATTGTTACCATTTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS TCA 90 bp | GGTAGTGTTATGTTTGCACCGTCAATGATTGCCTGTGCCAGTTCATaGTCATTGCTTTCAAAAGCATGTGCAGCGGCCTTCAAGGCATCC | + |
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Preference number: 5 (lower is better) Translates to: GSVMFAPSMIACASS*SLLSKACAAAFKAS Trigger: GGATGCCTTGAAGGCCGCTGCACATGCTTTTGAAAGCAATGATCATGAACTGGCACAGGCAATCATTGACGGTGCAAACATAACACTACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS-3UTR CAA 90 bp | GCCTTAAGAGTAAGAAATGGTAACAATAAAAAGGAGCCACGGGATCTTGGAAGAAGTTCTCCACTGGTGTaGGGGTTTGCACAGGCTGGC | + |
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Preference number: 5 (lower is better) Translates to: ALRVRNGNNKKEPRDLGRSSPLV*GFAQAG Trigger: GCCAGCCTGTGCAAACCCCAACACCAGTGGAGAACT...TCTTCCAAGATCCCGTGGCTCCTTTTTATTGTTACCATTTCTTACTCTTAAGGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS TCA 90 bp | ACTCTGTCAGTGCACCGTGTGGTAGTGTTATGTTTGCACCGTCAATaGTTGCCTGTGCCAGTTCATGATCATTGCTTTCAAAAGCATGTG | + |
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Preference number: 5 (lower is better) Translates to: TLSVHRVVVLCLHRQ*LPVPVHDHCFQKHV Trigger: CACATGCTTTTGAAAGCAATGATCATGAACTGGCACAGGCAATCATTGACGGTGCAAACATAACACTACCACACGGTGCACTGACAGAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS-3UTR CAA 90 bp | GCCTTAAGAGTAAGAAATGGTAACAATAAAAAGGAGCCACGGGATCTTGGAAGACAGAATTCATCCCTCTaGCTGCGCAGTTGTCCATCT | + |
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Preference number: 5 (lower is better) Translates to: ALRVRNGNNKKEPRDLGRQNSSL*LRSCPS Trigger: AGATGGACAACTGCGCAGCAAGAGGGATGAATTCTG...TCTTCCAAGATCCCGTGGCTCCTTTTTATTGTTACCATTTCTTACTCTTAAGGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS-3UTR CAA 90 bp | AGAAATGGTAACAATAAAAAGGAGCCACGGGATCTTGGAAGAAGGCAAGTCCAGTTTTCCTCTATCATGTaGATTGGTGGTGCCAGGCAA | + |
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Preference number: 5 (lower is better) Translates to: RNGNNKKEPRDLGRRQVQFSSIM*IGGARQ Trigger: TTGCCTGGCACCACCAATCAACATGATAGAGGAAAA...CTGGACTTGCCTTCTTCCAAGATCCCGTGGCTCCTTTTTATTGTTACCATTTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS-3UTR CAA 90 bp | GCCTTAAGAGTAAGAAATGGTAACAATAAAAAGGAGCCACGGGATCTTGGAAGAGATTCGTGTCCAGAATaGGGAGGTGGCTCAGGAATA | + |
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Preference number: 5 (lower is better) Translates to: ALRVRNGNNKKEPRDLGRDSCPE*GGGSGI Trigger: TATTCCTGAGCCACCTCCCAATTCTGGACACGAATC...TCTTCCAAGATCCCGTGGCTCCTTTTTATTGTTACCATTTCTTACTCTTAAGGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS CCA 72 bp | TTATCCGTGAGAGGCCTGCCAGAGAAGAACCAGCGCTaGCTGCCTGGCTCCACGCCCTCTGTGGCGTGTAAG | + |
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Preference number: 6 (lower is better) Translates to: LSVRGLPEKNQR*LPGSTPSVACK Trigger: CTTACACGCCACAGAGGGCGTGGAGCCAGGCAGCCAGCGCTGGTTCTTCTCTGGCAGGCCTCTCACGGATAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS CCA 72 bp | AGAACCAGCGCTGGCTGCCTGGCTCCACGCCCTCTGTaGCGTGTAAGCGCCTCTTCATGTGAAACACTGTGT | + |
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Preference number: 6 (lower is better) Translates to: RTSAGCLAPRPL*RVSASSCETLC Trigger: ACACAGTGTTTCACATGAAGAGGCGCTTACACGCCACAGAGGGCGTGGAGCCAGGCAGCCAGCGCTGGTTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS TCA 72 bp | TGGGGATCTTCAGCTCCTCCAGCTTCATCTTATCCGTaGGAGGCCTGCCAGAGAAGAACCAGCGCTGGCTGC | + |
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Preference number: 6 (lower is better) Translates to: WGSSAPPASSYP*EACQRRTSAGC Trigger: GCAGCCAGCGCTGGTTCTTCTCTGGCAGGCCTCTCACGGATAAGATGAAGCTGGAGGAGCTGAAGATCCCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS CCA 72 bp | AGTCTCTATGTCACTCTTTTCCTCTATCATGTTGATTaGTGGTGCCAGGCAATAGACTGGCAGCTGGTACCG | + |
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Preference number: 6 (lower is better) Translates to: SLYVTLFLYHVD*WCQAIDWQLVP Trigger: CGGTACCAGCTGCCAGTCTATTGCCTGGCACCACCAATCAACATGATAGAGGAAAAGAGTGACATAGAGACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS TCA 72 bp | ATGTTTGCACCGTCAATGATTGCCTGTGCCAGTTCATaGTCATTGCTTTCAAAAGCATGTGCAGCGGCCTTC | + |
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Preference number: 6 (lower is better) Translates to: MFAPSMIACASS*SLLSKACAAAF Trigger: GAAGGCCGCTGCACATGCTTTTGAAAGCAATGATCATGAACTGGCACAGGCAATCATTGACGGTGCAAACAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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| CDS TCA 72 bp | CAAGAGTCTCTATGTCACTCTTTTCCTCTATCATGTTaGTTGGTGGTGCCAGGCAATAGACTGGCAGCTGGT | + |
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Preference number: 6 (lower is better) Translates to: QESLCHSFPLSC*LVVPGNRLAAG Trigger: ACCAGCTGCCAGTCTATTGCCTGGCACCACCAATCAACATGATAGAGGAAAAGAGTGACATAGAGACTCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051053.5 |
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