RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for UBR1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027272

Ensembl transcript IDs: ENSMUST00000028728.6

Found 238 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGTAAAGCCAAGAATCAAGAGGTCTATGCACAGACTCAGGAGAGCTaGATTATTTATACGCAAGATGGCTCAACCACAGCAGGTTATAAC +
Preference number: 1 (lower is better)
Translates to: GKAKNQEVYAQTQES*IIYTQDGSTTAGYN
Trigger: GTTATAACCTGCTGTGGTTGAGCCATCTTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTGATTCTTGGCTTTACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
3UTR TCA 90 bp GCACAGCTAGCACTCTCCATAGAGAGATTTAGATCTGTTTCTGACTaGAGCCGTAGGTGGTACAATAAGGATATTTCCTTAAAGAAGAAA +
Preference number: 1 (lower is better)
Translates to: AQLALSIERFRSVSD*SRRWYNKDISLKKK
Trigger: TTTCTTCTTTAAGGAAATATCCTTATTGTACCACCTACGGCTTCAGTCAGAAACAGATCTAAATCTCTCTATGGAGAGTGCTAGCTGTGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
3UTR GCA 90 bp GTAGTATTTATCCAAGTAGGAAATCATGATTGTGAGTCTGGTGCCTaGTCACACCAATTTCTTACTGCAAAACCCACTTTTCATTCCATA +
Preference number: 1 (lower is better)
Translates to: VVFIQVGNHDCESGA*SHQFLTAKPTFHSI
Trigger: TATGGAATGAAAAGTGGGTTTTGCAGTAAGAAATTGGTGTGAGCAGGCACCAGACTCACAATCATGATTTCCTACTTGGATAAATACTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
3UTR-3UTR TCA 90 bp AAGAATCAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAACTGATGGAGAACTTGTaGCTCCACAGAGCTCCCTGG +
Preference number: 2 (lower is better)
Translates to: KNQEVYAQTQESCIIYTQLMENL*LHRAPW
Trigger: CCAGGGAGCTCTGTGGAGTCACAAGTTCTCCATCAG...TTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTGATTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
3UTR-3UTR GCA 90 bp CAGAAACTTCCATCTCAAGAAGCAGAACTGAGTGATGAATTAGGCTCTTTGGCTGAATCAAGAGGTCTATaGACAGACTCAGGAGAGCTG +
Preference number: 2 (lower is better)
Translates to: QKLPSQEAELSDELGSLAESRGL*TDSGEL
Trigger: CAGCTCTCCTGAGTCTGTGCATAGACCTCTTGATTC...AGCCAAAGAGCCTAATTCATCACTCAGTTCTGCTTCTTGAGATGGAAGTTTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
3UTR-3UTR TCA 90 bp CAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAGATGGCATGAGCACATTCTCCTaGATCTACTTGAGGTCTATA +
Preference number: 2 (lower is better)
Translates to: QEVYAQTQESCIIYTQDGMSTFS*IYLRSI
Trigger: TATAGACCTCAAGTAGATTCAGGAGAATGTGCTCAT...GCCATCTTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
3UTR-3UTR TCA 90 bp TGTGAGTCTGGTGCCTGCTCACACCAATTTCTTACTGCAAAACCCACTTTTCATACTGGGGCAATTTTCTaGTTCCCATTCTACAAAGAG +
Preference number: 2 (lower is better)
Translates to: CESGACSHQFLTAKPTFHTGAIF*FPFYKE
Trigger: CTCTTTGTAGAATGGGAATCAGAAAATTGCCCCAGT...ATGAAAAGTGGGTTTTGCAGTAAGAAATTGGTGTGAGCAGGCACCAGACTCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
3UTR-3UTR CCA 90 bp TGTGAGTCTGGTGCCTGCTCACACCAATTTCTTACTGCAAAACCCACTTTTCATCTTATGACCATTCACTaGGGCAATTTTCTGATTCCC +
Preference number: 2 (lower is better)
Translates to: CESGACSHQFLTAKPTFHLMTIH*GNFLIP
Trigger: GGGAATCAGAAAATTGCCCCAGTGAATGGTCATAAG...ATGAAAAGTGGGTTTTGCAGTAAGAAATTGGTGTGAGCAGGCACCAGACTCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
3UTR-3UTR TCA 90 bp CAGAAACTTCCATCTCAAGAAGCAGAACTGAGTGATGAATTAGGCTCTTTGGCTTCTCCTGAATCTACTTaGGGTCTATACTGGAAGGAT +
Preference number: 2 (lower is better)
Translates to: QKLPSQEAELSDELGSLASPEST*GLYWKD
Trigger: ATCCTTCCAGTATAGACCTCAAGTAGATTCAGGAGA...AGCCAAAGAGCCTAATTCATCACTCAGTTCTGCTTCTTGAGATGGAAGTTTCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
3UTR-3UTR TCA 90 bp TGTGAGTCTGGTGCCTGCTCACACCAATTTCTTACTGCAAAACCCACTTTTCATCTTAAGAAATGTAACTaGTGGAGAACTTGTGACTCC +
Preference number: 2 (lower is better)
Translates to: CESGACSHQFLTAKPTFHLKKCN*WRTCDS
Trigger: GGAGTCACAAGTTCTCCATCAGTTACATTTCTTAAG...ATGAAAAGTGGGTTTTGCAGTAAGAAATTGGTGTGAGCAGGCACCAGACTCACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
3UTR-3UTR GCA 90 bp CAGAAACTTCCATCTCAAGAAGCAGAACTGAGTGATGAATTAGGCTCTTTGGCTCAAGCCATAGAAGGTTaGAGAACTGGCTTAAATACA +
Preference number: 2 (lower is better)
Translates to: QKLPSQEAELSDELGSLAQAIEG*RTGLNT
Trigger: TGTATTTAAGCCAGTTCTGCAACCTTCTATGGCTTG...AGCCAAAGAGCCTAATTCATCACTCAGTTCTGCTTCTTGAGATGGAAGTTTCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
3UTR-3UTR GCA 90 bp CAGAAACTTCCATCTCAAGAAGCAGAACTGAGTGATGAATTAGGCTCTTTGGCTCAGACTCAGGAGAGCTaGATTATTTATACGCAAGAT +
Preference number: 2 (lower is better)
Translates to: QKLPSQEAELSDELGSLAQTQES*IIYTQD
Trigger: ATCTTGCGTATAAATAATGCAGCTCTCCTGAGTCTG...AGCCAAAGAGCCTAATTCATCACTCAGTTCTGCTTCTTGAGATGGAAGTTTCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
3UTR-3UTR CCA 90 bp AAGAATCAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAGAGATGTTAGCCAGATaGAGAAATGTCCACAAATGC +
Preference number: 2 (lower is better)
Translates to: KNQEVYAQTQESCIIYTQEMLAR*RNVHKC
Trigger: GCATTTGTGGACATTTCTCCATCTGGCTAACATCTC...TTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTGATTCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
3UTR-3UTR CCA 90 bp CAGAAACTTCCATCTCAAGAAGCAGAACTGAGTGATGAATTAGGCTCTTTGGCTTATTTATACGCAAGATaGCTCAACCACAGCAGGTTA +
Preference number: 2 (lower is better)
Translates to: QKLPSQEAELSDELGSLAYLYAR*LNHSRL
Trigger: TAACCTGCTGTGGTTGAGCCATCTTGCGTATAAATA...AGCCAAAGAGCCTAATTCATCACTCAGTTCTGCTTCTTGAGATGGAAGTTTCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
3UTR-3UTR CCA 90 bp TGTGAGTCTGGTGCCTGCTCACACCAATTTCTTACTGCAAAACCCACTTTTCATTGTATTTTTACTTCCTaGTCTTCACTAAACAGAAGG +
Preference number: 2 (lower is better)
Translates to: CESGACSHQFLTAKPTFHCIFTS*SSLNRR
Trigger: CCTTCTGTTTAGTGAAGACCAGGAAGTAAAAATACA...ATGAAAAGTGGGTTTTGCAGTAAGAAATTGGTGTGAGCAGGCACCAGACTCACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
3UTR-3UTR GCA 90 bp CAGAAACTTCCATCTCAAGAAGCAGAACTGAGTGATGAATTAGGCTCTTTGGCTAACACATCTTTCAACTaGAATATTACCCAATACCAC +
Preference number: 2 (lower is better)
Translates to: QKLPSQEAELSDELGSLANTSFN*NITQYH
Trigger: GTGGTATTGGGTAATATTGCAGTTGAAAGATGTGTT...AGCCAAAGAGCCTAATTCATCACTCAGTTCTGCTTCTTGAGATGGAAGTTTCTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
3UTR CAA 90 bp CCTAGACATCAAATCAAGGACCTGTTTCTTACAAGCCATAGAAGGTaGCAGAACTGGCTTAAATACAGTGTTCTAATTTCATCTCTTATG +
Preference number: 2 (lower is better)
Translates to: PRHQIKDLFLTSHRR*QNWLKYSVLISSLM
Trigger: CATAAGAGATGAAATTAGAACACTGTATTTAAGCCAGTTCTGCAACCTTCTATGGCTTGTAAGAAACAGGTCCTTGATTTGATGTCTAGG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
3UTR GCA 72 bp AAGAATCAAGAGGTCTATGCACAGACTCAGGAGAGCTaGATTATTTATACGCAAGATGGCTCAACCACAGCA +
Preference number: 3 (lower is better)
Translates to: KNQEVYAQTQES*IIYTQDGSTTA
Trigger: TGCTGTGGTTGAGCCATCTTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTGATTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
3UTR GCA 72 bp ATCCAAGTAGGAAATCATGATTGTGAGTCTGGTGCCTaGTCACACCAATTTCTTACTGCAAAACCCACTTTT +
Preference number: 3 (lower is better)
Translates to: IQVGNHDCESGA*SHQFLTAKPTF
Trigger: AAAAGTGGGTTTTGCAGTAAGAAATTGGTGTGAGCAGGCACCAGACTCACAATCATGATTTCCTACTTGGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
3UTR TCA 72 bp GCACTCTCCATAGAGAGATTTAGATCTGTTTCTGACTaGAGCCGTAGGTGGTACAATAAGGATATTTCCTTA +
Preference number: 3 (lower is better)
Translates to: ALSIERFRSVSD*SRRWYNKDISL
Trigger: TAAGGAAATATCCTTATTGTACCACCTACGGCTTCAGTCAGAAACAGATCTAAATCTCTCTATGGAGAGTGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
3UTR-3UTR CAA 90 bp AAGAATCAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAAGCAGAAATAGACACTaGGATGAACAAGCATTTCTT +
Preference number: 3 (lower is better)
Translates to: KNQEVYAQTQESCIIYTQSRNRH*DEQAFL
Trigger: AAGAAATGCTTGTTCATCCAAGTGTCTATTTCTGCT...TTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTGATTCTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
3UTR CCA 72 bp GACCTGTTTCTTACAAGCCATAGAAGGTTGCAGAACTaGCTTAAATACAGTGTTCTAATTTCATCTCTTATG +
Preference number: 3 (lower is better)
Translates to: DLFLTSHRRLQN*LKYSVLISSLM
Trigger: CATAAGAGATGAAATTAGAACACTGTATTTAAGCCAGTTCTGCAACCTTCTATGGCTTGTAAGAAACAGGTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp CAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAGATGGCCGATTGCCTGGATGGTaGACGCACACGTGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: QEVYAQTQESCIIYTQDGRLPGW*THTCSR
Trigger: CCTGGAGCACGTGTGCGTTCACCATCCAGGCAATCG...GCCATCTTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR GCA 90 bp TCTGGACATGGATCAAAAGACCCTCCAATACTTCCCCGTCCTCAGAAAGTTCTCACAGGCTTCCCTCTGTaGTGGGTTAGGGCGGTGGAT +
Preference number: 4 (lower is better)
Translates to: SGHGSKDPPILPRPQKVLTGFPL*WVRAVD
Trigger: ATCCACCGCCCTAACCCAGCACAGAGGGAAGCCTGT...GAGAACTTTCTGAGGACGGGGAAGTATTGGAGGGTCTTTTGATCCATGTCCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp TCTGGACATGGATCAAAAGACCCTCCAATACTTCCCCGTCCTCAGAAAGTTCTCATGATCTTCTGGCGATaGAGCCTAGCGGCCTCAGCT +
Preference number: 4 (lower is better)
Translates to: SGHGSKDPPILPRPQKVLMIFWR*SLAASA
Trigger: AGCTGAGGCCGCTAGGCTTCATCGCCAGAAGATCAT...GAGAACTTTCTGAGGACGGGGAAGTATTGGAGGGTCTTTTGATCCATGTCCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp TCTGGACATGGATCAAAAGACCCTCCAATACTTCCCCGTCCTCAGAAAGTTCTCCAGACATCTGGGCCATaGTCTTCTGGCGATGAAGCC +
Preference number: 4 (lower is better)
Translates to: SGHGSKDPPILPRPQKVLQTSGP*SSGDEA
Trigger: GGCTTCATCGCCAGAAGATCATGGCCCAGATGTCTG...GAGAACTTTCTGAGGACGGGGAAGTATTGGAGGGTCTTTTGATCCATGTCCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CCA 90 bp TGTGAGTCTGGTGCCTGCTCACACCAATTTCTTACTGCAAAACCCACTTTTCATGAACTCCGGAGGAGGTaGCGGCGGCAATGCTTCATC +
Preference number: 4 (lower is better)
Translates to: CESGACSHQFLTAKPTFHELRRR*RRQCFI
Trigger: GATGAAGCATTGCCGCCGCCACCTCCTCCGGAGTTC...ATGAAAAGTGGGTTTTGCAGTAAGAAATTGGTGTGAGCAGGCACCAGACTCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp TGTGAGTCTGGTGCCTGCTCACACCAATTTCTTACTGCAAAACCCACTTTTCATGGCCTCACTGACTGCTaGGGTGCTCTCTTCCTCCAT +
Preference number: 4 (lower is better)
Translates to: CESGACSHQFLTAKPTFHGLTDC*GALFLH
Trigger: ATGGAGGAAGAGAGCACCTCAGCAGTCAGTGAGGCC...ATGAAAAGTGGGTTTTGCAGTAAGAAATTGGTGTGAGCAGGCACCAGACTCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp CAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAGATGGCTCAAACAGGTCTACGTaGATGCGCTGCTGCGAGCTC +
Preference number: 4 (lower is better)
Translates to: QEVYAQTQESCIIYTQDGSNRST*MRCCEL
Trigger: GAGCTCGCAGCAGCGCATTCACGTAGACCTGTTTGA...GCCATCTTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp CAGAAACTTCCATCTCAAGAAGCAGAACTGAGTGATGAATTAGGCTCTTTGGCTAGCGGAGGTAAGGGGTaGTGCCGTTCCTCAGGGAGA +
Preference number: 4 (lower is better)
Translates to: QKLPSQEAELSDELGSLASGGKG*CRSSGR
Trigger: TCTCCCTGAGGAACGGCATCACCCCTTACCTCCGCT...AGCCAAAGAGCCTAATTCATCACTCAGTTCTGCTTCTTGAGATGGAAGTTTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR GCA 90 bp CAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAGATGGCAGTCGTGTGCAGCTGTaGCTCTGCAAGCTCGCAATC +
Preference number: 4 (lower is better)
Translates to: QEVYAQTQESCIIYTQDGSRVQL*LCKLAI
Trigger: GATTGCGAGCTTGCAGAGGCACAGCTGCACACGACT...GCCATCTTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CCA 90 bp TCTGGACATGGATCAAAAGACCCTCCAATACTTCCCCGTCCTCAGAAAGTTCTCTGCTCCAGGTCATCATaGGCACTCGTGGGTCTAGTT +
Preference number: 4 (lower is better)
Translates to: SGHGSKDPPILPRPQKVLCSRSS*ALVGLV
Trigger: AACTAGACCCACGAGTGCCCATGATGACCTGGAGCA...GAGAACTTTCTGAGGACGGGGAAGTATTGGAGGGTCTTTTGATCCATGTCCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp CAGAAACTTCCATCTCAAGAAGCAGAACTGAGTGATGAATTAGGCTCTTTGGCTATCTCAGCAACAACCTaGGCCACCAGGACCAGGCAG +
Preference number: 4 (lower is better)
Translates to: QKLPSQEAELSDELGSLAISATT*ATRTRQ
Trigger: CTGCCTGGTCCTGGTGGCTCAGGTTGTTGCTGAGAT...AGCCAAAGAGCCTAATTCATCACTCAGTTCTGCTTCTTGAGATGGAAGTTTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR GCA 90 bp TCTGGACATGGATCAAAAGACCCTCCAATACTTCCCCGTCCTCAGAAAGTTCTCAGGGCGGTGGATTTCTaGACACATGCTGACAATACC +
Preference number: 4 (lower is better)
Translates to: SGHGSKDPPILPRPQKVLRAVDF*THADNT
Trigger: GGTATTGTCAGCATGTGTGCAGAAATCCACCGCCCT...GAGAACTTTCTGAGGACGGGGAAGTATTGGAGGGTCTTTTGATCCATGTCCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR GCA 90 bp TCTGGACATGGATCAAAAGACCCTCCAATACTTCCCCGTCCTCAGAAAGTTCTCTGTGCAACTGCAAACTaGATTAGCGCCTTCAGACCG +
Preference number: 4 (lower is better)
Translates to: SGHGSKDPPILPRPQKVLCATAN*ISAFRP
Trigger: CGGTCTGAAGGCGCTAATGCAGTTTGCAGTTGCACA...GAGAACTTTCTGAGGACGGGGAAGTATTGGAGGGTCTTTTGATCCATGTCCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR GCA 90 bp CAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAGATGGCTGTTGCCAGACCAAATaGAGCTTCCGATACCGCTCC +
Preference number: 4 (lower is better)
Translates to: QEVYAQTQESCIIYTQDGCCQTK*SFRYRS
Trigger: GGAGCGGTATCGGAAGCTGCATTTGGTCTGGCAACA...GCCATCTTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CCA 90 bp CAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAGATGGCGGCGATGGCACTATGTaGCATGGGCTCAATGCAAAG +
Preference number: 4 (lower is better)
Translates to: QEVYAQTQESCIIYTQDGGDGTM*HGLNAK
Trigger: CTTTGCATTGAGCCCATGCCACATAGTGCCATCGCC...GCCATCTTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CCA 90 bp TCTGGACATGGATCAAAAGACCCTCCAATACTTCCCCGTCCTCAGAAAGTTCTCTGTAAGGCAGACATCTaGGCCATGATCTTCTGGCGA +
Preference number: 4 (lower is better)
Translates to: SGHGSKDPPILPRPQKVLCKADI*AMIFWR
Trigger: TCGCCAGAAGATCATGGCCCAGATGTCTGCCTTACA...GAGAACTTTCTGAGGACGGGGAAGTATTGGAGGGTCTTTTGATCCATGTCCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CCA 90 bp TCTGGACATGGATCAAAAGACCCTCCAATACTTCCCCGTCCTCAGAAAGTTCTCACCTCTTGTTCTTCTTaGCAGAGGATGCACGTCAGC +
Preference number: 4 (lower is better)
Translates to: SGHGSKDPPILPRPQKVLTSCSS*QRMHVS
Trigger: GCTGACGTGCATCCTCTGCCAAGAAGAACAAGAGGT...GAGAACTTTCTGAGGACGGGGAAGTATTGGAGGGTCTTTTGATCCATGTCCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CCA 90 bp TCTGGACATGGATCAAAAGACCCTCCAATACTTCCCCGTCCTCAGAAAGTTCTCCAAGACAGGAACTGCTaGGGCTTCTCCTTTAGCATG +
Preference number: 4 (lower is better)
Translates to: SGHGSKDPPILPRPQKVLQDRNC*GFSFSM
Trigger: CATGCTAAAGGAGAAGCCCCAGCAGTTCCTGTCTTG...GAGAACTTTCTGAGGACGGGGAAGTATTGGAGGGTCTTTTGATCCATGTCCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CCA 90 bp TGTGAGTCTGGTGCCTGCTCACACCAATTTCTTACTGCAAAACCCACTTTTCATGCGCCGACCAGAACATaGAAGAGATCCACGGACAGA +
Preference number: 4 (lower is better)
Translates to: CESGACSHQFLTAKPTFHAPTRT*KRSTDR
Trigger: TCTGTCCGTGGATCTCTTCCATGTTCTGGTCGGCGC...ATGAAAAGTGGGTTTTGCAGTAAGAAATTGGTGTGAGCAGGCACCAGACTCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp CAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAGATGGCACCAGGACCTCTACTTaGAAGCCGTCAAAAGGCACA +
Preference number: 4 (lower is better)
Translates to: QEVYAQTQESCIIYTQDGTRTST*KPSKGT
Trigger: TGTGCCTTTTGACGGCTTTCAAGTAGAGGTCCTGGT...GCCATCTTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR GCA 90 bp TCTGGACATGGATCAAAAGACCCTCCAATACTTCCCCGTCCTCAGAAAGTTCTCTGCTGCGAGCTCAGCTaGACAGCTTCAAAATACTTC +
Preference number: 4 (lower is better)
Translates to: SGHGSKDPPILPRPQKVLCCELS*TASKYF
Trigger: GAAGTATTTTGAAGCTGTGCAGCTGAGCTCGCAGCA...GAGAACTTTCTGAGGACGGGGAAGTATTGGAGGGTCTTTTGATCCATGTCCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR GCA 90 bp TCTGGACATGGATCAAAAGACCCTCCAATACTTCCCCGTCCTCAGAAAGTTCTCAGACAGAGGACAGGATaGTTTCGCTCATCATCTGCA +
Preference number: 4 (lower is better)
Translates to: SGHGSKDPPILPRPQKVLRQRTG*FRSSSA
Trigger: TGCAGATGATGAGCGAAAGCATCCTGTCCTCTGTCT...GAGAACTTTCTGAGGACGGGGAAGTATTGGAGGGTCTTTTGATCCATGTCCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CCA 90 bp CAGAAACTTCCATCTCAAGAAGCAGAACTGAGTGATGAATTAGGCTCTTTGGCTGCTGGGTTAGGGCGGTaGATTTCTGCACACATGCTG +
Preference number: 4 (lower is better)
Translates to: QKLPSQEAELSDELGSLAAGLGR*ISAHML
Trigger: CAGCATGTGTGCAGAAATCCACCGCCCTAACCCAGC...AGCCAAAGAGCCTAATTCATCACTCAGTTCTGCTTCTTGAGATGGAAGTTTCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CCA 90 bp TCTGGACATGGATCAAAAGACCCTCCAATACTTCCCCGTCCTCAGAAAGTTCTCCTCCTTCAGCAGAATTaGCAAACAGTTCTTCAGGCG +
Preference number: 4 (lower is better)
Translates to: SGHGSKDPPILPRPQKVLLLQQN*QTVLQA
Trigger: CGCCTGAAGAACTGTTTGCCAATTCTGCTGAAGGAG...GAGAACTTTCTGAGGACGGGGAAGTATTGGAGGGTCTTTTGATCCATGTCCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CCA 90 bp AAGAATCAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAATCCAAGTAAGGGGCTaGGTAGGCACAGCCTCTGGC +
Preference number: 4 (lower is better)
Translates to: KNQEVYAQTQESCIIYTQIQVRG*VGTASG
Trigger: GCCAGAGGCTGTGCCTACCCAGCCCCTTACTTGGAT...TTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTGATTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp AAGAATCAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAGCTCTTCCAGGCTCGTaGTCCACACAAAAAGGGCCA +
Preference number: 4 (lower is better)
Translates to: KNQEVYAQTQESCIIYTQALPGS*STQKGP
Trigger: TGGCCCTTTTTGTGTGGATCACGAGCCTGGAAGAGC...TTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTGATTCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp TGTGAGTCTGGTGCCTGCTCACACCAATTTCTTACTGCAAAACCCACTTTTCATGCATGTGCGCCATGGTaGTCAGATGGAAGAGATAGA +
Preference number: 4 (lower is better)
Translates to: CESGACSHQFLTAKPTFHACAPW*SDGRDR
Trigger: TCTATCTCTTCCATCTGATCACCATGGCGCACATGC...ATGAAAAGTGGGTTTTGCAGTAAGAAATTGGTGTGAGCAGGCACCAGACTCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CCA 90 bp TGTGAGTCTGGTGCCTGCTCACACCAATTTCTTACTGCAAAACCCACTTTTCATTCCTCCTTTGCTTCCTaGCAAGTGGCATACACACCT +
Preference number: 4 (lower is better)
Translates to: CESGACSHQFLTAKPTFHSSFAS*QVAYTP
Trigger: AGGTGTGTATGCCACTTGCCAGGAAGCAAAGGAGGA...ATGAAAAGTGGGTTTTGCAGTAAGAAATTGGTGTGAGCAGGCACCAGACTCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CCA 90 bp CAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAGATGGCTCTGAGAACACAGGATaGCCCCACAGAAAAGACAGA +
Preference number: 4 (lower is better)
Translates to: QEVYAQTQESCIIYTQDGSENTG*PHRKDR
Trigger: TCTGTCTTTTCTGTGGGGCCATCCTGTGTTCTCAGA...GCCATCTTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CCA 90 bp AAGAATCAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAGGTAGGCACAGCCTCTaGCTTTTCCTTCCACCAGGA +
Preference number: 4 (lower is better)
Translates to: KNQEVYAQTQESCIIYTQGRHSL*LFLPPG
Trigger: TCCTGGTGGAAGGAAAAGCCAGAGGCTGTGCCTACC...TTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTGATTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp TCTGGACATGGATCAAAAGACCCTCCAATACTTCCCCGTCCTCAGAAAGTTCTCAATATTCTCCTGGCTTaGGCAATCACCTCTTCATTC +
Preference number: 4 (lower is better)
Translates to: SGHGSKDPPILPRPQKVLNILLA*AITSSF
Trigger: GAATGAAGAGGTGATTGCTCAAGCCAGGAGAATATT...GAGAACTTTCTGAGGACGGGGAAGTATTGGAGGGTCTTTTGATCCATGTCCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp TCTGGACATGGATCAAAAGACCCTCCAATACTTCCCCGTCCTCAGAAAGTTCTCTTTCTGCACACATGCTaGCAATACCATGGCGTTATT +
Preference number: 4 (lower is better)
Translates to: SGHGSKDPPILPRPQKVLFLHTC*QYHGVI
Trigger: AATAACGCCATGGTATTGTCAGCATGTGTGCAGAAA...GAGAACTTTCTGAGGACGGGGAAGTATTGGAGGGTCTTTTGATCCATGTCCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp AGAGATGTTAGCCAGATGGAGAAATGTCCACAAATGCTTAATGTGACCTCATTAAGCAAGCGGCGGCCCTaGAGACAGATCTGTATCTGT +
Preference number: 4 (lower is better)
Translates to: RDVSQMEKCPQMLNVTSLSKRRP*RQICIC
Trigger: ACAGATACAGATCTGTCTTCAGGGCCGCCGCTTGCT...TAATGAGGTCACATTAAGCATTTGTGGACATTTCTCCATCTGGCTAACATCTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp CAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAGATGGCAGCTACAGAGTGCACTaGATTCTCCTTCAGCAGAAT +
Preference number: 4 (lower is better)
Translates to: QEVYAQTQESCIIYTQDGSYRVH*ILLQQN
Trigger: ATTCTGCTGAAGGAGAATTCAGTGCACTCTGTAGCT...GCCATCTTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp AAGAATCAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAATGGCAACAGATGTTCTaGGAACACAGGATGGCCCCA +
Preference number: 4 (lower is better)
Translates to: KNQEVYAQTQESCIIYTQWQQMF*EHRMAP
Trigger: TGGGGCCATCCTGTGTTCTCAGAACATCTGTTGCCA...TTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTGATTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp TGTGAGTCTGGTGCCTGCTCACACCAATTTCTTACTGCAAAACCCACTTTTCATCGCTCCCGAGATAAATaGAGTGGGTTTCCTCTCTTT +
Preference number: 4 (lower is better)
Translates to: CESGACSHQFLTAKPTFHRSRDK*SGFPLF
Trigger: AAAGAGAGGAAACCCACTTCATTTATCTCGGGAGCG...ATGAAAAGTGGGTTTTGCAGTAAGAAATTGGTGTGAGCAGGCACCAGACTCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR GCA 90 bp TCTGGACATGGATCAAAAGACCCTCCAATACTTCCCCGTCCTCAGAAAGTTCTCTGTACACTCTCTTCTTaGTTTTCCAAATCTGGGTCC +
Preference number: 4 (lower is better)
Translates to: SGHGSKDPPILPRPQKVLCTLSS*FSKSGS
Trigger: GGACCCAGATTTGGAAAAGCAAGAAGAGAGTGTACA...GAGAACTTTCTGAGGACGGGGAAGTATTGGAGGGTCTTTTGATCCATGTCCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR GCA 90 bp TCTGGACATGGATCAAAAGACCCTCCAATACTTCCCCGTCCTCAGAAAGTTCTCCTTTATATCCTCCTTTaGTTCCTGGCAAGTGGCATA +
Preference number: 4 (lower is better)
Translates to: SGHGSKDPPILPRPQKVLLYILL*FLASGI
Trigger: TATGCCACTTGCCAGGAAGCAAAGGAGGATATAAAG...GAGAACTTTCTGAGGACGGGGAAGTATTGGAGGGTCTTTTGATCCATGTCCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR GCA 90 bp TGTGAGTCTGGTGCCTGCTCACACCAATTTCTTACTGCAAAACCCACTTTTCATCTTCTGCCAGCACACTaGATGCATTACATGACCACA +
Preference number: 4 (lower is better)
Translates to: CESGACSHQFLTAKPTFHLLPAH*MHYMTT
Trigger: TGTGGTCATGTAATGCATGCAGTGTGCTGGCAGAAG...ATGAAAAGTGGGTTTTGCAGTAAGAAATTGGTGTGAGCAGGCACCAGACTCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR GCA 90 bp TGTGAGTCTGGTGCCTGCTCACACCAATTTCTTACTGCAAAACCCACTTTTCATCTTTCGCTCATCATCTaGAGACCGTGGACACCTAAA +
Preference number: 4 (lower is better)
Translates to: CESGACSHQFLTAKPTFHLSLII*RPWTPK
Trigger: TTTAGGTGTCCACGGTCTGCAGATGATGAGCGAAAG...ATGAAAAGTGGGTTTTGCAGTAAGAAATTGGTGTGAGCAGGCACCAGACTCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CCA 90 bp TCTGGACATGGATCAAAAGACCCTCCAATACTTCCCCGTCCTCAGAAAGTTCTCAAGTGTTCTAGAGAGTaGCAGGTGTATGCTTACAAG +
Preference number: 4 (lower is better)
Translates to: SGHGSKDPPILPRPQKVLKCSRE*QVYAYK
Trigger: CTTGTAAGCATACACCTGCCACTCTCTAGAACACTT...GAGAACTTTCTGAGGACGGGGAAGTATTGGAGGGTCTTTTGATCCATGTCCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CCA 90 bp AAGAATCAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAGTAGGTTTCTGGCGATaGCACTATGTGGCATGGGCT +
Preference number: 4 (lower is better)
Translates to: KNQEVYAQTQESCIIYTQVGFWR*HYVAWA
Trigger: AGCCCATGCCACATAGTGCCATCGCCAGAAACCTAC...TTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTGATTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CCA 90 bp CAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAGATGGCACTCCAGTCCTGAAGTaGTTGCCACAACTAAACAAG +
Preference number: 4 (lower is better)
Translates to: QEVYAQTQESCIIYTQDGTPVLK*LPQLNK
Trigger: CTTGTTTAGTTGTGGCAACCACTTCAGGACTGGAGT...GCCATCTTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp CAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAGATGGCCTCCCACAATATAGATaGGGACCTGAAGCATTTCTT +
Preference number: 4 (lower is better)
Translates to: QEVYAQTQESCIIYTQDGLPQYR*GPEAFL
Trigger: AAGAAATGCTTCAGGTCCTCATCTATATTGTGGGAG...GCCATCTTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp TCTGGACATGGATCAAAAGACCCTCCAATACTTCCCCGTCCTCAGAAAGTTCTCATTGGGGGATTCCTTTaGGTTTTTCCAAGAGCATTT +
Preference number: 4 (lower is better)
Translates to: SGHGSKDPPILPRPQKVLIGGFL*VFPRAF
Trigger: AAATGCTCTTGGAAAAACTCAAAGGAATCCCCCAAT...GAGAACTTTCTGAGGACGGGGAAGTATTGGAGGGTCTTTTGATCCATGTCCAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp AGAGATGTTAGCCAGATGGAGAAATGTCCACAAATGCTTAATGTGACCTCATTAGCCAAGGTCAAAAGTTaGGCAAGAGCCTCCGCATTC +
Preference number: 4 (lower is better)
Translates to: RDVSQMEKCPQMLNVTSLAKVKS*ARASAF
Trigger: GAATGCGGAGGCTCTTGCTCAACTTTTGACCTTGGC...TAATGAGGTCACATTAAGCATTTGTGGACATTTCTCCATCTGGCTAACATCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp AGAGATGTTAGCCAGATGGAGAAATGTCCACAAATGCTTAATGTGACCTCATTATTGTGTATCAGGACCTaGGGGCAGGTAGTCCTCTGT +
Preference number: 4 (lower is better)
Translates to: RDVSQMEKCPQMLNVTSLLCIRT*GQVVLC
Trigger: ACAGAGGACTACCTGCCCTCAGGTCCTGATACACAA...TAATGAGGTCACATTAAGCATTTGTGGACATTTCTCCATCTGGCTAACATCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp TGTGAGTCTGGTGCCTGCTCACACCAATTTCTTACTGCAAAACCCACTTTTCATAATCCAAATAGCATCTaGTTAGTCTCCTGGCTCCGA +
Preference number: 4 (lower is better)
Translates to: CESGACSHQFLTAKPTFHNPNSI*LVSWLR
Trigger: TCGGAGCCAGGAGACTAATCAGATGCTATTTGGATT...ATGAAAAGTGGGTTTTGCAGTAAGAAATTGGTGTGAGCAGGCACCAGACTCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR GCA 90 bp TGTGAGTCTGGTGCCTGCTCACACCAATTTCTTACTGCAAAACCCACTTTTCATAAACCTTCCAGGAACTaGGCTCTTAATCGTTCTGTC +
Preference number: 4 (lower is better)
Translates to: CESGACSHQFLTAKPTFHKPSRN*ALNRSV
Trigger: GACAGAACGATTAAGAGCGCAGTTCCTGGAAGGTTT...ATGAAAAGTGGGTTTTGCAGTAAGAAATTGGTGTGAGCAGGCACCAGACTCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR GCA 90 bp CAGAAACTTCCATCTCAAGAAGCAGAACTGAGTGATGAATTAGGCTCTTTGGCTTATTGCAGAGAGACTTaGAGAGCGGGCATAGGTACT +
Preference number: 4 (lower is better)
Translates to: QKLPSQEAELSDELGSLAYCRET*RAGIGT
Trigger: AGTACCTATGCCCGCTCTGCAAGTCTCTCTGCAATA...AGCCAAAGAGCCTAATTCATCACTCAGTTCTGCTTCTTGAGATGGAAGTTTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CCA 90 bp TGTGAGTCTGGTGCCTGCTCACACCAATTTCTTACTGCAAAACCCACTTTTCATACAGAGCACACACGTTaGATCAATTGCACAATCCCT +
Preference number: 4 (lower is better)
Translates to: CESGACSHQFLTAKPTFHTEHTR*INCTIP
Trigger: AGGGATTGTGCAATTGATCCAACGTGTGTGCTCTGT...ATGAAAAGTGGGTTTTGCAGTAAGAAATTGGTGTGAGCAGGCACCAGACTCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp TCTGGACATGGATCAAAAGACCCTCCAATACTTCCCCGTCCTCAGAAAGTTCTCGTAAGTTCATATCTCTaGAGTACCAGTAACAAGAAC +
Preference number: 4 (lower is better)
Translates to: SGHGSKDPPILPRPQKVLVSSYL*STSNKN
Trigger: GTTCTTGTTACTGGTACTTCAGAGATATGAACTTAC...GAGAACTTTCTGAGGACGGGGAAGTATTGGAGGGTCTTTTGATCCATGTCCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp CAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAGATGGCTGGCCACTTTGTTTATaGCATTCTCTAAGCCAGTTT +
Preference number: 4 (lower is better)
Translates to: QEVYAQTQESCIIYTQDGWPLCL*HSLSQF
Trigger: AAACTGGCTTAGAGAATGTCATAAACAAAGTGGCCA...GCCATCTTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp AAGAATCAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAACCAAGTCTGGATCCATaGAAAGAGGGTCCAGTGTTT +
Preference number: 4 (lower is better)
Translates to: KNQEVYAQTQESCIIYTQPSLDP*KEGPVF
Trigger: AAACACTGGACCCTCTTTTCATGGATCCAGACTTGG...TTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTGATTCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp AAGAATCAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAATCTGCTTCAAAGACTTaGGTAAGGCAGGATCTCCAC +
Preference number: 4 (lower is better)
Translates to: KNQEVYAQTQESCIIYTQSASKT*VRQDLH
Trigger: GTGGAGATCCTGCCTTACTCAAGTCTTTGAAGCAGA...TTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTGATTCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR GCA 90 bp CAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAGATGGCTGTATAAGTTCCATGTaGCAAGTCTGGATCCATGAA +
Preference number: 4 (lower is better)
Translates to: QEVYAQTQESCIIYTQDGCISSM*QVWIHE
Trigger: TTCATGGATCCAGACTTGGCACATGGAACTTATACA...GCCATCTTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR GCA 90 bp AAGAATCAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAATCACTGTTGATCTTCTaGGGCTGCAAAGGGATGATG +
Preference number: 4 (lower is better)
Translates to: KNQEVYAQTQESCIIYTQSLLIF*GCKGMM
Trigger: CATCATCCCTTTGCAGCCGCAGAAGATCAACAGTGA...TTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTGATTCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR GCA 90 bp AGAGATGTTAGCCAGATGGAGAAATGTCCACAAATGCTTAATGTGACCTCATTAATAGTGGAAAAGCAGTaGAGCACAGCGGAGGTAAGG +
Preference number: 4 (lower is better)
Translates to: RDVSQMEKCPQMLNVTSLIVEKQ*STAEVR
Trigger: CCTTACCTCCGCTGTGCTGCACTGCTTTTCCACTAT...TAATGAGGTCACATTAAGCATTTGTGGACATTTCTCCATCTGGCTAACATCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CCA 90 bp TGTGAGTCTGGTGCCTGCTCACACCAATTTCTTACTGCAAAACCCACTTTTCATGTAGTAAGGGCCTTATaGTATCCCAATATTCCTGGA +
Preference number: 4 (lower is better)
Translates to: CESGACSHQFLTAKPTFHVVRAL*YPNIPG
Trigger: TCCAGGAATATTGGGATACCATAAGGCCCTTACTAC...ATGAAAAGTGGGTTTTGCAGTAAGAAATTGGTGTGAGCAGGCACCAGACTCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CCA 90 bp AAGAATCAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAATCATCTGCAGACCGTaGACACCTAAAGTGAGAAGC +
Preference number: 4 (lower is better)
Translates to: KNQEVYAQTQESCIIYTQIICRP*TPKVRS
Trigger: GCTTCTCACTTTAGGTGTCCACGGTCTGCAGATGAT...TTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTGATTCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp CAGAAACTTCCATCTCAAGAAGCAGAACTGAGTGATGAATTAGGCTCTTTGGCTCTGCTTAAACGTACATaGAGACCAGCAAGTGTTCTA +
Preference number: 4 (lower is better)
Translates to: QKLPSQEAELSDELGSLALLKRT*RPASVL
Trigger: TAGAACACTTGCTGGTCTTCATGTACGTTTAAGCAG...AGCCAAAGAGCCTAATTCATCACTCAGTTCTGCTTCTTGAGATGGAAGTTTCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp TGTGAGTCTGGTGCCTGCTCACACCAATTTCTTACTGCAAAACCCACTTTTCATGTTTGTGGGTTTCAATaGAGTTTTTCTGTAAGGCAG +
Preference number: 4 (lower is better)
Translates to: CESGACSHQFLTAKPTFHVCGFQ*SFSVRQ
Trigger: CTGCCTTACAGAAAAACTTCATTGAAACCCACAAAC...ATGAAAAGTGGGTTTTGCAGTAAGAAATTGGTGTGAGCAGGCACCAGACTCACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp CAGAAACTTCCATCTCAAGAAGCAGAACTGAGTGATGAATTAGGCTCTTTGGCTTATTTCACCGAAGACTaGACTCCAAAACTCAGGATG +
Preference number: 4 (lower is better)
Translates to: QKLPSQEAELSDELGSLAYFTED*TPKLRM
Trigger: CATCCTGAGTTTTGGAGTTCAGTCTTCGGTGAAATA...AGCCAAAGAGCCTAATTCATCACTCAGTTCTGCTTCTTGAGATGGAAGTTTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR GCA 90 bp CAGAAACTTCCATCTCAAGAAGCAGAACTGAGTGATGAATTAGGCTCTTTGGCTTTTTTCTCCCTTATCTaGAGTTCAGGAGGCAATTCC +
Preference number: 4 (lower is better)
Translates to: QKLPSQEAELSDELGSLAFFSLI*SSGGNS
Trigger: GGAATTGCCTCCTGAACTGCAGATAAGGGAGAAAAA...AGCCAAAGAGCCTAATTCATCACTCAGTTCTGCTTCTTGAGATGGAAGTTTCTG
42% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR GCA 90 bp CAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAGATGGCAAAGGCACAAATTCATaGAGTCTTGAAATAGCACCT +
Preference number: 4 (lower is better)
Translates to: QEVYAQTQESCIIYTQDGKGTNS*SLEIAP
Trigger: AGGTGCTATTTCAAGACTGCATGAATTTGTGCCTTT...GCCATCTTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR GCA 90 bp AAGAATCAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAAGGTGGCGGCGGCAATaGTTCATCTTTATTTTCTTG +
Preference number: 4 (lower is better)
Translates to: KNQEVYAQTQESCIIYTQRWRRQ*FIFIFL
Trigger: CAAGAAAATAAAGATGAAGCATTGCCGCCGCCACCT...TTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTGATTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR GCA 90 bp AAGAATCAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAATAATGCAGTGCTGTTaGCAGACCAAATGCAGCTTC +
Preference number: 4 (lower is better)
Translates to: KNQEVYAQTQESCIIYTQIMQCC*QTKCSF
Trigger: GAAGCTGCATTTGGTCTGGCAACAGCACTGCATTAT...TTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTGATTCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CCA 90 bp TGTGAGTCTGGTGCCTGCTCACACCAATTTCTTACTGCAAAACCCACTTTTCATGTTATCATGTCCTTCTaGCTTTCTAATTGGGGGATT +
Preference number: 4 (lower is better)
Translates to: CESGACSHQFLTAKPTFHVIMSF*LSNWGI
Trigger: AATCCCCCAATTAGAAAGCCAGAAGGACATGATAAC...ATGAAAAGTGGGTTTTGCAGTAAGAAATTGGTGTGAGCAGGCACCAGACTCACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CCA 90 bp CAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAGATGGCACTGTGTCAAACATCTaGAGTATCCATGTTATCATG +
Preference number: 4 (lower is better)
Translates to: QEVYAQTQESCIIYTQDGTVSNI*SIHVIM
Trigger: CATGATAACATGGATACTCCAGATGTTTGACACAGT...GCCATCTTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CCA 90 bp AGAGATGTTAGCCAGATGGAGAAATGTCCACAAATGCTTAATGTGACCTCATTATCCATGTGCCAAGTCTaGATCCATGAAAAGAGGGTC +
Preference number: 4 (lower is better)
Translates to: RDVSQMEKCPQMLNVTSLSMCQV*IHEKRV
Trigger: GACCCTCTTTTCATGGATCCAGACTTGGCACATGGA...TAATGAGGTCACATTAAGCATTTGTGGACATTTCTCCATCTGGCTAACATCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp AAGAATCAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAGAGACGTTCTCTGAGTaGCTCTTTATATCCTCCTTT +
Preference number: 4 (lower is better)
Translates to: KNQEVYAQTQESCIIYTQETFSE*LFISSF
Trigger: AAAGGAGGATATAAAGAGTCACTCAGAGAACGTCTC...TTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTGATTCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp AAGAATCAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAACTAAAGATCAATTCATaGAGGATCTTACGGGCACCT +
Preference number: 4 (lower is better)
Translates to: KNQEVYAQTQESCIIYTQLKINS*RILRAP
Trigger: AGGTGCCCGTAAGATCCTTCATGAATTGATCTTTAG...TTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTGATTCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR GCA 90 bp AAGAATCAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAGCTTCAAAATACTTCTaGCAGCACACTGCATGCATT +
Preference number: 4 (lower is better)
Translates to: KNQEVYAQTQESCIIYTQASKYF*QHTACI
Trigger: AATGCATGCAGTGTGCTGGCAGAAGTATTTTGAAGC...TTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTGATTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR GCA 90 bp AAGAATCAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAATCTTCTATAATGCAGTaGTGTTGCCAGACCAAATGC +
Preference number: 4 (lower is better)
Translates to: KNQEVYAQTQESCIIYTQSSIMQ*CCQTKC
Trigger: GCATTTGGTCTGGCAACAGCACTGCATTATAGAAGA...TTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTGATTCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CCA 90 bp AAGAATCAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAACACTTTGTAGGATTTaGTTTCCAGACTATGACCGC +
Preference number: 4 (lower is better)
Translates to: KNQEVYAQTQESCIIYTQTLCRI*FPDYDR
Trigger: GCGGTCATAGTCTGGAAACCAAATCCTACAAAGTGT...TTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTGATTCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CCA 90 bp CAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAGATGGCTGTTTAATCAAATCCTaGTCTTTTGTGGATATGGTC +
Preference number: 4 (lower is better)
Translates to: QEVYAQTQESCIIYTQDGCLIKS*SFVDMV
Trigger: GACCATATCCACAAAAGACCAGGATTTGATTAAACA...GCCATCTTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp AGAGATGTTAGCCAGATGGAGAAATGTCCACAAATGCTTAATGTGACCTCATTATCTTGGTACTGGACATaGAATTTGTACTGCACCTCA +
Preference number: 4 (lower is better)
Translates to: RDVSQMEKCPQMLNVTSLSWYWT*NLYCTS
Trigger: TGAGGTGCAGTACAAATTTCATGTCCAGTACCAAGA...TAATGAGGTCACATTAAGCATTTGTGGACATTTCTCCATCTGGCTAACATCTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp CAGAAACTTCCATCTCAAGAAGCAGAACTGAGTGATGAATTAGGCTCTTTGGCTAGCATTTGTATATTCTaGGCATTCATGGCTGAACTT +
Preference number: 4 (lower is better)
Translates to: QKLPSQEAELSDELGSLASICIF*AFMAEL
Trigger: AAGTTCAGCCATGAATGCTCAGAATATACAAATGCT...AGCCAAAGAGCCTAATTCATCACTCAGTTCTGCTTCTTGAGATGGAAGTTTCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CCA 90 bp AAGAATCAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAATATTCTGAGCATTCATaGCTGAACTTCCCAATCTTG +
Preference number: 4 (lower is better)
Translates to: KNQEVYAQTQESCIIYTQYSEHS*LNFPIL
Trigger: CAAGATTGGGAAGTTCAGCCATGAATGCTCAGAATA...TTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTGATTCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CCA 90 bp AGAGATGTTAGCCAGATGGAGAAATGTCCACAAATGCTTAATGTGACCTCATTATATAACCCGATATTCTaGCAAGGACAGTCTGTATCC +
Preference number: 4 (lower is better)
Translates to: RDVSQMEKCPQMLNVTSLYNPIF*QGQSVS
Trigger: GGATACAGACTGTCCTTGCCAGAATATCGGGTTATA...TAATGAGGTCACATTAAGCATTTGTGGACATTTCTCCATCTGGCTAACATCTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CCA 90 bp TGTGAGTCTGGTGCCTGCTCACACCAATTTCTTACTGCAAAACCCACTTTTCATGTATCCCAATATTCCTaGAAAAGCAGGAACAAATTT +
Preference number: 4 (lower is better)
Translates to: CESGACSHQFLTAKPTFHVSQYS*KSRNKF
Trigger: AAATTTGTTCCTGCTTTTCCAGGAATATTGGGATAC...ATGAAAAGTGGGTTTTGCAGTAAGAAATTGGTGTGAGCAGGCACCAGACTCACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp AAGAATCAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAATATAACCCTGGAAGTTaGATTTATTGTTCCTGTCCA +
Preference number: 4 (lower is better)
Translates to: KNQEVYAQTQESCIIYTQYNPGS*IYCSCP
Trigger: TGGACAGGAACAATAAATTCAACTTCCAGGGTTATA...TTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTGATTCTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp AGAGATGTTAGCCAGATGGAGAAATGTCCACAAATGCTTAATGTGACCTCATTAAAACTCAGGATGGAATaGAACTCAAAAGTCGAATCC +
Preference number: 4 (lower is better)
Translates to: RDVSQMEKCPQMLNVTSLKLRME*NSKVES
Trigger: GGATTCGACTTTTGAGTTTCATTCCATCCTGAGTTT...TAATGAGGTCACATTAAGCATTTGTGGACATTTCTCCATCTGGCTAACATCTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp AAGAATCAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAATTATGCTGTCTATTTTaGAGTGCTCCAAATAGAGGT +
Preference number: 4 (lower is better)
Translates to: KNQEVYAQTQESCIIYTQLCCLF*SAPNRG
Trigger: ACCTCTATTTGGAGCACTTCAAAATAGACAGCATAA...TTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTGATTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR TCA 90 bp AGAGATGTTAGCCAGATGGAGAAATGTCCACAAATGCTTAATGTGACCTCATTAAGAGTAACTGCCAGTTaGATCCAAATAGCATCTGAT +
Preference number: 4 (lower is better)
Translates to: RDVSQMEKCPQMLNVTSLRVTAS*IQIASD
Trigger: ATCAGATGCTATTTGGATTCAACTGGCAGTTACTCT...TAATGAGGTCACATTAAGCATTTGTGGACATTTCTCCATCTGGCTAACATCTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR GCA 90 bp AGAGATGTTAGCCAGATGGAGAAATGTCCACAAATGCTTAATGTGACCTCATTAACACGTTGGATCAATTaGACAATCCCTACAGGAATA +
Preference number: 4 (lower is better)
Translates to: RDVSQMEKCPQMLNVTSLTRWIN*TIPTGI
Trigger: TATTCCTGTAGGGATTGTGCAATTGATCCAACGTGT...TAATGAGGTCACATTAAGCATTTGTGGACATTTCTCCATCTGGCTAACATCTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR GCA 90 bp AGAGATGTTAGCCAGATGGAGAAATGTCCACAAATGCTTAATGTGACCTCATTAACCACAGCACTTTTCTaGTTCAAAGACTTGAGTAAG +
Preference number: 4 (lower is better)
Translates to: RDVSQMEKCPQMLNVTSLTTALF*FKDLSK
Trigger: CTTACTCAAGTCTTTGAAGCAGAAAAGTGCTGTGGT...TAATGAGGTCACATTAAGCATTTGTGGACATTTCTCCATCTGGCTAACATCTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR GCA 90 bp AAGAATCAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAGGATTTTTAAGAAAATaGAGACTCCAGCACCACAAT +
Preference number: 4 (lower is better)
Translates to: KNQEVYAQTQESCIIYTQGFLRK*RLQHHN
Trigger: ATTGTGGTGCTGGAGTCTGCATTTTCTTAAAAATCC...TTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTGATTCTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CCA 90 bp AAGAATCAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAGCAGGAACAAATTTGTaGGTAAAGATAGATAGCTAC +
Preference number: 4 (lower is better)
Translates to: KNQEVYAQTQESCIIYTQAGTNL*VKIDSY
Trigger: GTAGCTATCTATCTTTACCCACAAATTTGTTCCTGC...TTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTGATTCTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR GCA 90 bp AGAGATGTTAGCCAGATGGAGAAATGTCCACAAATGCTTAATGTGACCTCATTAATTTCTTCCATTCCCTaGATACAGGTAAGAATCTTC +
Preference number: 4 (lower is better)
Translates to: RDVSQMEKCPQMLNVTSLISSIP*IQVRIF
Trigger: GAAGATTCTTACCTGTATGCAGGGAATGGAAGAAAT...TAATGAGGTCACATTAAGCATTTGTGGACATTTCTCCATCTGGCTAACATCTCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS GCA 90 bp CACAGGTACCAGCCGGGAGCACCGCACCCAGCGAGGCCGTCTGTGTaGTGCGACACTTCCACAAAGAAAGCAGATGCACAGCGAGCCTCC +
Preference number: 5 (lower is better)
Translates to: HRYQPGAPHPARPSV*CDTSTKKADAQRAS
Trigger: GGAGGCTCGCTGTGCATCTGCTTTCTTTGTGGAAGTGTCGCAGCACACAGACGGCCTCGCTGGGTGCGGTGCTCCCGGCTGGTACCTGTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS GCA 90 bp AGGTACCAGCCGGGAGCACCGCACCCAGCGAGGCCGTCTGTGTGCTaGGACACTTCCACAAAGAAAGCAGATGCACAGCGAGCCTCCTCA +
Preference number: 5 (lower is better)
Translates to: RYQPGAPHPARPSVC*DTSTKKADAQRASS
Trigger: TGAGGAGGCTCGCTGTGCATCTGCTTTCTTTGTGGAAGTGTCGCAGCACACAGACGGCCTCGCTGGGTGCGGTGCTCCCGGCTGGTACCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 90 bp CAAGTAAATAGTGGAAAAGCAGTGCAGCACAGCGGAGGTAAGGGGTaGTGCCGTTCCTCAGGGAGAGCCACAGGTACCAGCCGGGAGCAC +
Preference number: 5 (lower is better)
Translates to: QVNSGKAVQHSGGKG*CRSSGRATGTSREH
Trigger: GTGCTCCCGGCTGGTACCTGTGGCTCTCCCTGAGGAACGGCATCACCCCTTACCTCCGCTGTGCTGCACTGCTTTTCCACTATTTACTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS GCA 90 bp AGCGAGGCCGTCTGTGTGCTGCGACACTTCCACAAAGAAAGCAGATaGACAGCGAGCCTCCTCACTATCCTCTTCACCCTCAGCAAGCGG +
Preference number: 5 (lower is better)
Translates to: SEAVCVLRHFHKESR*TASLLTILFTLSKR
Trigger: CCGCTTGCTGAGGGTGAAGAGGATAGTGAGGAGGCTCGCTGTGCATCTGCTTTCTTTGTGGAAGTGTCGCAGCACACAGACGGCCTCGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 90 bp AGCGGGCATAGGTACTCGCCGCTCTCCAGGTCAAACAGGTCTACGTaGATGCGCTGCTGCGAGCTCAGCTGCACAGCTTCAAAATACTTC +
Preference number: 5 (lower is better)
Translates to: SGHRYSPLSRSNRST*MRCCELSCTASKYF
Trigger: GAAGTATTTTGAAGCTGTGCAGCTGAGCTCGCAGCAGCGCATTCACGTAGACCTGTTTGACCTGGAGAGCGGCGAGTACCTATGCCCGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS GCA 90 bp GGCATAGGTACTCGCCGCTCTCCAGGTCAAACAGGTCTACGTGAATaGGCTGCTGCGAGCTCAGCTGCACAGCTTCAAAATACTTCTGCC +
Preference number: 5 (lower is better)
Translates to: GIGTRRSPGQTGLRE*AAASSAAQLQNTSA
Trigger: GGCAGAAGTATTTTGAAGCTGTGCAGCTGAGCTCGCAGCAGCGCATTCACGTAGACCTGTTTGACCTGGAGAGCGGCGAGTACCTATGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 90 bp TTATATCCTCCTTTGCTTCCTGGCAAGTGGCATACACACCTGCTTTaGCAGCCCGGCGACCCTCTTTGTCGATGGCAGTCGTGTGCAGCT +
Preference number: 5 (lower is better)
Translates to: LYPPLLPGKWHTHLL*QPGDPLCRWQSCAA
Trigger: AGCTGCACACGACTGCCATCGACAAAGAGGGTCGCCGGGCTGTCAAAGCAGGTGTGTATGCCACTTGCCAGGAAGCAAAGGAGGATATAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 90 bp ATAATTTTGTTCATCCAGGAGCCAAGGCGCAGAGCGAATTTCTGGTaGGCCATAACCACGGAGTGCAGCACTTCCACATGGAGGGGGTGC +
Preference number: 5 (lower is better)
Translates to: IILFIQEPRRRANFW*AITTECSTSTWRGC
Trigger: GCACCCCCTCCATGTGGAAGTGCTGCACTCCGTGGTTATGGCTCACCAGAAATTCGCTCTGCGCCTTGGCTCCTGGATGAACAAAATTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 90 bp ATTCTGGCAAGGACAGTCTGTATCCACCGGGCCAAGGTCAAAAGTTaGGCAAGAGCCTCCGCATTCTCACTGTTGATCTTCTGCGGCTGC +
Preference number: 5 (lower is better)
Translates to: ILARTVCIHRAKVKS*ARASAFSLLIFCGC
Trigger: GCAGCCGCAGAAGATCAACAGTGAGAATGCGGAGGCTCTTGCTCAACTTTTGACCTTGGCCCGGTGGATACAGACTGTCCTTGCCAGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS GCA 90 bp ACTCTTTATATCCTCCTTTGCTTCCTGGCAAGTGGCATACACACCTaGTTTGACAGCCCGGCGACCCTCTTTGTCGATGGCAGTCGTGTG +
Preference number: 5 (lower is better)
Translates to: TLYILLCFLASGIHT*FDSPATLFVDGSRV
Trigger: CACACGACTGCCATCGACAAAGAGGGTCGCCGGGCTGTCAAAGCAGGTGTGTATGCCACTTGCCAGGAAGCAAAGGAGGATATAAAGAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 90 bp AGAATAACTGACAGGAGCCGAGCCAGATGTTTGTGTATCAGGACCTaGGGGCAGGTAGTCCTCTGTGCAACTGCAAACTGCATTAGCGCC +
Preference number: 5 (lower is better)
Translates to: RITDRSRARCLCIRT*GQVVLCATANCISA
Trigger: GGCGCTAATGCAGTTTGCAGTTGCACAGAGGACTACCTGCCCTCAGGTCCTGATACACAAACATCTGGCTCGGCTCCTGTCAGTTATTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS GCA 90 bp TTCAGGAGCTTTCTGAAGCTGCTGCTTCTCTTCCAGCAAGCCCAGTaGCAATATATGGAACGCCATCTGCAGCATCCCTTCTGTCCACAG +
Preference number: 5 (lower is better)
Translates to: FRSFLKLLLLFQQAQ*QYMERHLQHPFCPQ
Trigger: CTGTGGACAGAAGGGATGCTGCAGATGGCGTTCCATATATTGGCACTGGGCTTGCTGGAAGAGAAGCAGCAGCTTCAGAAAGCTCCTGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CCA 90 bp CCCCTAAGTGGTCCACAGGCTTCCCTCTGTGCTGGGTTAGGGCGGTaGATTTCTGCACACATGCTGACAATACCATGGCGTTATTTTCTA +
Preference number: 5 (lower is better)
Translates to: PLSGPQASLCAGLGR*ISAHMLTIPWRYFL
Trigger: TAGAAAATAACGCCATGGTATTGTCAGCATGTGTGCAGAAATCCACCGCCCTAACCCAGCACAGAGGGAAGCCTGTGGACCACTTAGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 90 bp GACCACAGCTTCCTGTATAAGTTCCATGTGCCAAGTCTGGATCCATaGAAAGAGGGTCCAGTGTTTCCCCTAAGTGGTCCACAGGCTTCC +
Preference number: 5 (lower is better)
Translates to: DHSFLYKFHVPSLDP*KEGPVFPLSGPQAS
Trigger: GGAAGCCTGTGGACCACTTAGGGGAAACACTGGACCCTCTTTTCATGGATCCAGACTTGGCACATGGAACTTATACAGGAAGCTGTGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS GCA 90 bp TGGTCCACAGGCTTCCCTCTGTGCTGGGTTAGGGCGGTGGATTTCTaGACACATGCTGACAATACCATGGCGTTATTTTCTAGTTTCACC +
Preference number: 5 (lower is better)
Translates to: WSTGFPLCWVRAVDF*THADNTMALFSSFT
Trigger: GGTGAAACTAGAAAATAACGCCATGGTATTGTCAGCATGTGTGCAGAAATCCACCGCCCTAACCCAGCACAGAGGGAAGCCTGTGGACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CCA 90 bp TCCCAATACAAGGATGGGAACGCTAAGACTGCGCCGACCAGAACATaGAAGAGATCCACGGACAGAAGGCCTGGTGTATTTTCTGATTGC +
Preference number: 5 (lower is better)
Translates to: SQYKDGNAKTAPTRT*KRSTDRRPGVFSDC
Trigger: GCAATCAGAAAATACACCAGGCCTTCTGTCCGTGGATCTCTTCCATGTTCTGGTCGGCGCAGTCTTAGCGTTCCCATCCTTGTATTGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 90 bp TGTTGCCAGACCAAATGCAGCTTCCGATACCGCTCCCGAGATAAATaGAGTGGGTTTCCTCTCTTTAGCCCTGGGTCTGTTTCTCCATAT +
Preference number: 5 (lower is better)
Translates to: CCQTKCSFRYRSRDK*SGFPLFSPGSVSPY
Trigger: ATATGGAGAAACAGACCCAGGGCTAAAGAGAGGAAACCCACTTCATTTATCTCGGGAGCGGTATCGGAAGCTGCATTTGGTCTGGCAACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS GCA 90 bp CATCTGCAGCATCCCTTCTGTCCACAGATTAGACTCCATGTCCACTaGCCGCTCAAAGATGGTCCTGAGGATGTACATCATAACATCACA +
Preference number: 5 (lower is better)
Translates to: HLQHPFCPQIRLHVH*PLKDGPEDVHHNIT
Trigger: TGTGATGTTATGATGTACATCCTCAGGACCATCTTTGAGCGGGCAGTGGACATGGAGTCTAATCTGTGGACAGAAGGGATGCTGCAGATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 90 bp GCACGGACAGGGCGGTTATGGAGATGCTTCTCTCGTGGTCGTCGCTaGTGTACTCTTTCTGCAGCTGTTTATAATACTTCACAAATTCCA +
Preference number: 5 (lower is better)
Translates to: ARTGRLWRCFSRGRR*CTLSAAVYNTSQIP
Trigger: TGGAATTTGTGAAGTATTATAAACAGCTGCAGAAAGAGTACATCAGCGACGACCACGAGAGAAGCATCTCCATAACCGCCCTGTCCGTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CAA 90 bp AGAGATGTTAGCCAGATGGAGAAATGTCCACAAATGCTTAATGTGACCTCATTAGCATACACACCTGCTTaGACAGCCCGGCGACCCTCT +
Preference number: 5 (lower is better)
Translates to: RDVSQMEKCPQMLNVTSLAYTPA*TARRPS
Trigger: AGAGGGTCGCCGGGCTGTCAAAGCAGGTGTGTATGC...TAATGAGGTCACATTAAGCATTTGTGGACATTTCTCCATCTGGCTAACATCTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CAA 90 bp TCTGGACATGGATCAAAAGACCCTCCAATACTTCCCCGTCCTCAGAAAGTTCTCTCACAGCTGAGCAGGTaGACTACTTTGCTGAAAGCA +
Preference number: 5 (lower is better)
Translates to: SGHGSKDPPILPRPQKVLSQLSR*TTLLKA
Trigger: TGCTTTCAGCAAAGTAGTCAACCTGCTCAGCTGTGA...GAGAACTTTCTGAGGACGGGGAAGTATTGGAGGGTCTTTTGATCCATGTCCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CAA 90 bp TGTGAGTCTGGTGCCTGCTCACACCAATTTCTTACTGCAAAACCCACTTTTCATGGCCAAGGTCAAAAGTaGAGCAAGAGCCTCCGCATT +
Preference number: 5 (lower is better)
Translates to: CESGACSHQFLTAKPTFHGQGQK*SKSLRI
Trigger: AATGCGGAGGCTCTTGCTCAACTTTTGACCTTGGCC...ATGAAAAGTGGGTTTTGCAGTAAGAAATTGGTGTGAGCAGGCACCAGACTCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS GCA 90 bp GGTAAAACTTCTAGCAGCGTTTCAGTAATGACAGAAATAACATTCTaGTCTTCAATAAGATGCCGGGCCAAGGTCGGGACGGTGAGCATC +
Preference number: 5 (lower is better)
Translates to: GKTSSSVSVMTEITF*SSIRCRAKVGTVSI
Trigger: GATGCTCACCGTCCCGACCTTGGCCCGGCATCTTATTGAAGAGCAGAATGTTATTTCTGTCATTACTGAAACGCTGCTAGAAGTTTTACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS GCA 90 bp TCACAAGCACACCACTCTTGGAACATGAGCAAAATATTCTTTAGTTaGATCTGTATAGCGATGGCAGCCTCCCAGTCAGGGTCCACTTCA +
Preference number: 5 (lower is better)
Translates to: SQAHHSWNMSKIFFS*ICIAMAASQSGSTS
Trigger: TGAAGTGGACCCTGACTGGGAGGCTGCCATCGCTATACAGATGCAACTAAAGAATATTTTGCTCATGTTCCAAGAGTGGTGTGCTTGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CAA 90 bp CAGAAACTTCCATCTCAAGAAGCAGAACTGAGTGATGAATTAGGCTCTTTGGCTCACCTCTTGTTCTTCTaGGCAGAGGATGCACGTCAG +
Preference number: 5 (lower is better)
Translates to: QKLPSQEAELSDELGSLAHLLFF*AEDARQ
Trigger: CTGACGTGCATCCTCTGCCAAGAAGAACAAGAGGTG...AGCCAAAGAGCCTAATTCATCACTCAGTTCTGCTTCTTGAGATGGAAGTTTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CAA 90 bp CAGAAACTTCCATCTCAAGAAGCAGAACTGAGTGATGAATTAGGCTCTTTGGCTGTATTGCAGAGAGACTaGCAGAGCGGGCATAGGTAC +
Preference number: 5 (lower is better)
Translates to: QKLPSQEAELSDELGSLAVLQRD*QSGHRY
Trigger: GTACCTATGCCCGCTCTGCAAGTCTCTCTGCAATAC...AGCCAAAGAGCCTAATTCATCACTCAGTTCTGCTTCTTGAGATGGAAGTTTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CAA 90 bp TCTGGACATGGATCAAAAGACCCTCCAATACTTCCCCGTCCTCAGAAAGTTCTCCGAATCCCCCATTCCTaGATTAAACAAGACAGGAAC +
Preference number: 5 (lower is better)
Translates to: SGHGSKDPPILPRPQKVLRIPHS*IKQDRN
Trigger: GTTCCTGTCTTGTTTAATCAAGGAATGGGGGATTCG...GAGAACTTTCTGAGGACGGGGAAGTATTGGAGGGTCTTTTGATCCATGTCCAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 90 bp TTCTTCTACGAGGCAGGCCTGGCAAAATATCTGTCTAAAGTCACTTaGATAGCTCATAATTTTGTTCATCCAGGAGCCAAGGCGCAGAGC +
Preference number: 5 (lower is better)
Translates to: FFYEAGLAKYLSKVT*IAHNFVHPGAKAQS
Trigger: GCTCTGCGCCTTGGCTCCTGGATGAACAAAATTATGAGCTATTCAAGTGACTTTAGACAGATATTTTGCCAGGCCTGCCTCGTAGAAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 90 bp TTTCTGGCGATGGCACTATGTGGCATGGGCTCAATGCAAAGTAAGTaGGTAATCTCTCTCATTATAACCTCCTCTCTGGTAACATTTCCC +
Preference number: 5 (lower is better)
Translates to: FLAMALCGMGSMQSK*VISLIITSSLVTFP
Trigger: GGGAAATGTTACCAGAGAGGAGGTTATAATGAGAGAGATTACTCACTTACTTTGCATTGAGCCCATGCCACATAGTGCCATCGCCAGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 90 bp GCAGGAACAAATTTGTGGGTAAAGATAGATAGCTACAGAGTGCACTaGATTCTCCTTCAGCAGAATTGGCAAACAGTTCTTCAGGCGGAG +
Preference number: 5 (lower is better)
Translates to: AGTNLWVKIDSYRVH*ILLQQNWQTVLQAE
Trigger: CTCCGCCTGAAGAACTGTTTGCCAATTCTGCTGAAGGAGAATTCAGTGCACTCTGTAGCTATCTATCTTTACCCACAAATTTGTTCCTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS GCA 90 bp ATACAGGTAAGAATCTTCAGAAAAGACCGGAAACCTTCCAGGAACTaGGCTCTTAATCGTTCTGTCCATATGACAGGCTTGCTAATCAGG +
Preference number: 5 (lower is better)
Translates to: IQVRIFRKDRKPSRN*ALNRSVHMTGLLIR
Trigger: CCTGATTAGCAAGCCTGTCATATGGACAGAACGATTAAGAGCGCAGTTCCTGGAAGGTTTCCGGTCTTTTCTGAAGATTCTTACCTGTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CAA 90 bp CAGAAACTTCCATCTCAAGAAGCAGAACTGAGTGATGAATTAGGCTCTTTGGCTTACAGAGCACACACGTaGGATCAATTGCACAATCCC +
Preference number: 5 (lower is better)
Translates to: QKLPSQEAELSDELGSLAYRAHT*DQLHNP
Trigger: GGGATTGTGCAATTGATCCAACGTGTGTGCTCTGTA...AGCCAAAGAGCCTAATTCATCACTCAGTTCTGCTTCTTGAGATGGAAGTTTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CAA 90 bp CAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAGATGGCGAATATTCTCCTGGCTaGAGCAATCACCTCTTCATT +
Preference number: 5 (lower is better)
Translates to: QEVYAQTQESCIIYTQDGEYSPG*SNHLFI
Trigger: AATGAAGAGGTGATTGCTCAAGCCAGGAGAATATTC...GCCATCTTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CAA 90 bp CAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAGATGGCGTCCACTTCAATGTGTaGTCCAACTTGTCTTCTGAT +
Preference number: 5 (lower is better)
Translates to: QEVYAQTQESCIIYTQDGVHFNV*SNLSSD
Trigger: ATCAGAAGACAAGTTGGACAACACATTGAAGTGGAC...GCCATCTTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CAA 90 bp TGTGAGTCTGGTGCCTGCTCACACCAATTTCTTACTGCAAAACCCACTTTTCATACTATGACCGCACAATaGCACTACTGTCTTGGTACT +
Preference number: 5 (lower is better)
Translates to: CESGACSHQFLTAKPTFHTMTAQ*HYCLGT
Trigger: AGTACCAAGACAGTAGTGCAATTGTGCGGTCATAGT...ATGAAAAGTGGGTTTTGCAGTAAGAAATTGGTGTGAGCAGGCACCAGACTCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CAA 90 bp TGTGAGTCTGGTGCCTGCTCACACCAATTTCTTACTGCAAAACCCACTTTTCATCCAGTCCTGAAGTGGTaGCCACAACTAAACAAGATT +
Preference number: 5 (lower is better)
Translates to: CESGACSHQFLTAKPTFHPVLKW*PQLNKI
Trigger: AATCTTGTTTAGTTGTGGCAACCACTTCAGGACTGG...ATGAAAAGTGGGTTTTGCAGTAAGAAATTGGTGTGAGCAGGCACCAGACTCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CAA 90 bp CAGAAACTTCCATCTCAAGAAGCAGAACTGAGTGATGAATTAGGCTCTTTGGCTAGTATAGAAATCAACTaGCTGATCCCACCACGATGC +
Preference number: 5 (lower is better)
Translates to: QKLPSQEAELSDELGSLASIEIN*LIPPRC
Trigger: GCATCGTGGTGGGATCAGCAAGTTGATTTCTATACT...AGCCAAAGAGCCTAATTCATCACTCAGTTCTGCTTCTTGAGATGGAAGTTTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CAA 90 bp CAGAAACTTCCATCTCAAGAAGCAGAACTGAGTGATGAATTAGGCTCTTTGGCTCACACGTTGGATCAATaGCACAATCCCTACAGGAAT +
Preference number: 5 (lower is better)
Translates to: QKLPSQEAELSDELGSLAHTLDQ*HNPYRN
Trigger: ATTCCTGTAGGGATTGTGCAATTGATCCAACGTGTG...AGCCAAAGAGCCTAATTCATCACTCAGTTCTGCTTCTTGAGATGGAAGTTTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CAA 90 bp CAGAAACTTCCATCTCAAGAAGCAGAACTGAGTGATGAATTAGGCTCTTTGGCTTCTTTATATCCTCCTTaGCTTCCTGGCAAGTGGCAT +
Preference number: 5 (lower is better)
Translates to: QKLPSQEAELSDELGSLASLYPP*LPGKWH
Trigger: ATGCCACTTGCCAGGAAGCAAAGGAGGATATAAAGA...AGCCAAAGAGCCTAATTCATCACTCAGTTCTGCTTCTTGAGATGGAAGTTTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CAA 90 bp TCTGGACATGGATCAAAAGACCCTCCAATACTTCCCCGTCCTCAGAAAGTTCTCAATTGCACTACTGTCTaGGTACTGGACATGAAATTT +
Preference number: 5 (lower is better)
Translates to: SGHGSKDPPILPRPQKVLNCTTV*VLDMKF
Trigger: AAATTTCATGTCCAGTACCAAGACAGTAGTGCAATT...GAGAACTTTCTGAGGACGGGGAAGTATTGGAGGGTCTTTTGATCCATGTCCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CAA 90 bp TGTGAGTCTGGTGCCTGCTCACACCAATTTCTTACTGCAAAACCCACTTTTCATCCCATTCACTATTTCTaGGCAACAGATGTTCTGAGA +
Preference number: 5 (lower is better)
Translates to: CESGACSHQFLTAKPTFHPIHYF*ATDVLR
Trigger: TCTCAGAACATCTGTTGCCAAGAAATAGTGAATGGG...ATGAAAAGTGGGTTTTGCAGTAAGAAATTGGTGTGAGCAGGCACCAGACTCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 90 bp CTGCGTAGACTCTTCCCAGTTTGTCCTGGCTATAACCCTGGAAGTTaGATTTATTGTTCCTGTCCAAGTATTCAGGTAAAACTTCTAGCA +
Preference number: 5 (lower is better)
Translates to: LRRLFPVCPGYNPGS*IYCSCPSIQVKLLA
Trigger: TGCTAGAAGTTTTACCTGAATACTTGGACAGGAACAATAAATTCAACTTCCAGGGTTATAGCCAGGACAAACTGGGAAGAGTCTACGCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CAA 90 bp CAGAAACTTCCATCTCAAGAAGCAGAACTGAGTGATGAATTAGGCTCTTTGGCTGTTGTTTCTCCACTTTaGAAAACCTTCCCACACAAC +
Preference number: 5 (lower is better)
Translates to: QKLPSQEAELSDELGSLAVVSPL*KTFPHN
Trigger: GTTGTGTGGGAAGGTTTTCAAAAGTGGAGAAACAAC...AGCCAAAGAGCCTAATTCATCACTCAGTTCTGCTTCTTGAGATGGAAGTTTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CAA 90 bp TGTGAGTCTGGTGCCTGCTCACACCAATTTCTTACTGCAAAACCCACTTTTCATAATTGGGGGATTCCTTaGAGTTTTTCCAAGAGCATT +
Preference number: 5 (lower is better)
Translates to: CESGACSHQFLTAKPTFHNWGIP*SFSKSI
Trigger: AATGCTCTTGGAAAAACTCAAAGGAATCCCCCAATT...ATGAAAAGTGGGTTTTGCAGTAAGAAATTGGTGTGAGCAGGCACCAGACTCACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CAA 90 bp AGAGATGTTAGCCAGATGGAGAAATGTCCACAAATGCTTAATGTGACCTCATTATCTCCTTCAGCAGAATaGGCAAACAGTTCTTCAGGC +
Preference number: 5 (lower is better)
Translates to: RDVSQMEKCPQMLNVTSLSPSAE*ANSSSG
Trigger: GCCTGAAGAACTGTTTGCCAATTCTGCTGAAGGAGA...TAATGAGGTCACATTAAGCATTTGTGGACATTTCTCCATCTGGCTAACATCTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CAA 90 bp CAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAAGATGGCAAAGCAGGAACAAATTaGTGGGTAAAGATAGATAGC +
Preference number: 5 (lower is better)
Translates to: QEVYAQTQESCIIYTQDGKAGTN*WVKIDS
Trigger: GCTATCTATCTTTACCCACAAATTTGTTCCTGCTTT...GCCATCTTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CAA 90 bp AAGAATCAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAATTCTGCTTCAAAGACTaGAGTAAGGCAGGATCTCCA +
Preference number: 5 (lower is better)
Translates to: KNQEVYAQTQESCIIYTQFCFKD*SKAGSP
Trigger: TGGAGATCCTGCCTTACTCAAGTCTTTGAAGCAGAA...TTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTGATTCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 90 bp AGCAAATATCCGGATCCTCTCCAAATAAGTACCACTCCAAAGGAGTaGGTATTGACATCTGTACACTCTCTTCTTGCTTTTCCAAATCTG +
Preference number: 5 (lower is better)
Translates to: SKYPDPLQISTTPKE*VLTSVHSLLAFPNL
Trigger: CAGATTTGGAAAAGCAAGAAGAGAGTGTACAGATGTCAATACTCACTCCTTTGGAGTGGTACTTATTTGGAGAGGATCCGGATATTTGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CCA 90 bp TTTATGAACACTACTTTGGAAGCAGTCCATACAGAGCACACACGTTaGATCAATTGCACAATCCCTACAGGAATATGTTGTTTCTCCACT +
Preference number: 5 (lower is better)
Translates to: FMNTTLEAVHTEHTR*INCTIPTGICCFST
Trigger: AGTGGAGAAACAACATATTCCTGTAGGGATTGTGCAATTGATCCAACGTGTGTGCTCTGTATGGACTGCTTCCAAAGTAGTGTTCATAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CCA 90 bp TCTTCCTTCCCTGTTACTTCTGACGTATTATCATACATGAGTTTGTaGGTTTCAATGAAGTTTTTCTGTAAGGCAGACATCTGGGCCATG +
Preference number: 5 (lower is better)
Translates to: SSFPVTSDVLSYMSL*VSMKFFCKADIWAM
Trigger: CATGGCCCAGATGTCTGCCTTACAGAAAAACTTCATTGAAACCCACAAACTCATGTATGATAATACGTCAGAAGTAACAGGGAAGGAAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CAA 90 bp TGTGAGTCTGGTGCCTGCTCACACCAATTTCTTACTGCAAAACCCACTTTTCATAGTAACAAGAACTTGTaGGGATCCATTATAGATGCT +
Preference number: 5 (lower is better)
Translates to: CESGACSHQFLTAKPTFHSNKNL*GSIIDA
Trigger: AGCATCTATAATGGATCCCAACAAGTTCTTGTTACT...ATGAAAAGTGGGTTTTGCAGTAAGAAATTGGTGTGAGCAGGCACCAGACTCACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 90 bp TCTGCAGACTGTAGATCACATGATCATACGAATGGTGCTCATCGTTaGAAAGGACACAATAGTATCGTTCATTTTTCTCCCTTATCTGCA +
Preference number: 5 (lower is better)
Translates to: SADCRSHDHTNGAHR*KGHNSIVHFSPLSA
Trigger: TGCAGATAAGGGAGAAAAATGAACGATACTATTGTGTCCTTTTCAACGATGAGCACCATTCGTATGATCATGTGATCTACAGTCTGCAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 90 bp GGTGCTCTCTTCCTCCATAATGGAGTCTTCCTTCCCTGTTACTTCTaGCGTATTATCATACATGAGTTTGTGGGTTTCAATGAAGTTTTT +
Preference number: 5 (lower is better)
Translates to: GALFLHNGVFLPCYF*RIIIHEFVGFNEVF
Trigger: AAAAACTTCATTGAAACCCACAAACTCATGTATGATAATACGTCAGAAGTAACAGGGAAGGAAGACTCCATTATGGAGGAAGAGAGCACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CCA 90 bp TTCACTGTGTCAAACATCTGGAGTATCCATGTTATCATGTCCTTCTaGCTTTCTAATTGGGGGATTCCTTTGAGTTTTTCCAAGAGCATT +
Preference number: 5 (lower is better)
Translates to: FTVSNIWSIHVIMSF*LSNWGIPLSFSKSI
Trigger: AATGCTCTTGGAAAAACTCAAAGGAATCCCCCAATTAGAAAGCCAGAAGGACATGATAACATGGATACTCCAGATGTTTGACACAGTGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CAA 90 bp AAGAATCAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAATTTATGAACACTACTTaGGAAGCAGTCCATACAGAG +
Preference number: 5 (lower is better)
Translates to: KNQEVYAQTQESCIIYTQFMNTT*EAVHTE
Trigger: CTCTGTATGGACTGCTTCCAAAGTAGTGTTCATAAA...TTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTGATTCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CAA 90 bp AAGAATCAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAACTGAACTTCCCAATCTaGAAGCCTTATGGTAAAAGT +
Preference number: 5 (lower is better)
Translates to: KNQEVYAQTQESCIIYTQLNFPI*KPYGKS
Trigger: ACTTTTACCATAAGGCTTCAAGATTGGGAAGTTCAG...TTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTGATTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CAA 90 bp AAGAATCAAGAGGTCTATGCACAGACTCAGGAGAGCTGCATTATTTATACGCAACACCTTTATAAAGTTTaGCATCCCAAAGCATTAGTC +
Preference number: 5 (lower is better)
Translates to: KNQEVYAQTQESCIIYTQHLYKV*HPKALV
Trigger: GACTAATGCTTTGGGATGCAAAACTTTATAAAGGTG...TTGCGTATAAATAATGCAGCTCTCCTGAGTCTGTGCATAGACCTCTTGATTCTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS-3UTR CAA 90 bp AGAGATGTTAGCCAGATGGAGAAATGTCCACAAATGCTTAATGTGACCTCATTAAATGTGTTGTCCAACTaGTCTTCTGATTTCTTCCAT +
Preference number: 5 (lower is better)
Translates to: RDVSQMEKCPQMLNVTSLNVLSN*SSDFFH
Trigger: ATGGAAGAAATCAGAAGACAAGTTGGACAACACATT...TAATGAGGTCACATTAAGCATTTGTGGACATTTCTCCATCTGGCTAACATCTCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 72 bp ATGCCGGCCGCTGCGGGGCCAGGGGAGGCTCCGGGCTaGCGTCCATCCTCTCGGCGCCGTCCATCTCTTCGT +
Preference number: 6 (lower is better)
Translates to: MPAAAGPGEAPG*RPSSRRRPSLR
Trigger: ACGAAGAGATGGACGGCGCCGAGAGGATGGACGTCAGCCCGGAGCCTCCCCTGGCCCCGCAGCGGCCGGCAT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS GCA 72 bp CCGGGAGCACCGCACCCAGCGAGGCCGTCTGTGTGCTaGGACACTTCCACAAAGAAAGCAGATGCACAGCGA +
Preference number: 6 (lower is better)
Translates to: PGAPHPARPSVC*DTSTKKADAQR
Trigger: TCGCTGTGCATCTGCTTTCTTTGTGGAAGTGTCGCAGCACACAGACGGCCTCGCTGGGTGCGGTGCTCCCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS GCA 72 bp CAGCCGGGAGCACCGCACCCAGCGAGGCCGTCTGTGTaGTGCGACACTTCCACAAAGAAAGCAGATGCACAG +
Preference number: 6 (lower is better)
Translates to: QPGAPHPARPSV*CDTSTKKADAQ
Trigger: CTGTGCATCTGCTTTCTTTGTGGAAGTGTCGCAGCACACAGACGGCCTCGCTGGGTGCGGTGCTCCCGGCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 72 bp AGTGGAAAAGCAGTGCAGCACAGCGGAGGTAAGGGGTaGTGCCGTTCCTCAGGGAGAGCCACAGGTACCAGC +
Preference number: 6 (lower is better)
Translates to: SGKAVQHSGGKG*CRSSGRATGTS
Trigger: GCTGGTACCTGTGGCTCTCCCTGAGGAACGGCATCACCCCTTACCTCCGCTGTGCTGCACTGCTTTTCCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 72 bp AGGTACTCGCCGCTCTCCAGGTCAAACAGGTCTACGTaGATGCGCTGCTGCGAGCTCAGCTGCACAGCTTCA +
Preference number: 6 (lower is better)
Translates to: RYSPLSRSNRST*MRCCELSCTAS
Trigger: TGAAGCTGTGCAGCTGAGCTCGCAGCAGCGCATTCACGTAGACCTGTTTGACCTGGAGAGCGGCGAGTACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CAA 90 bp TGCGGCTGCAAAGGGATGATGGGGATGACAGTATTGCAGAGAGACTaGCAGAGCGGGCATAGGTACTCGCCGCTCTCCAGGTCAAACAGG +
Preference number: 6 (lower is better)
Translates to: CGCKGMMGMTVLQRD*QSGHRYSPLSRSNR
Trigger: CCTGTTTGACCTGGAGAGCGGCGAGTACCTATGCCCGCTCTGCAAGTCTCTCTGCAATACTGTCATCCCCATCATCCCTTTGCAGCCGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS GCA 72 bp ATCCTCCTTTGCTTCCTGGCAAGTGGCATACACACCTaGTTTGACAGCCCGGCGACCCTCTTTGTCGATGGC +
Preference number: 6 (lower is better)
Translates to: ILLCFLASGIHT*FDSPATLFVDG
Trigger: GCCATCGACAAAGAGGGTCGCCGGGCTGTCAAAGCAGGTGTGTATGCCACTTGCCAGGAAGCAAAGGAGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CCA 72 bp GGTCCACAGGCTTCCCTCTGTGCTGGGTTAGGGCGGTaGATTTCTGCACACATGCTGACAATACCATGGCGT +
Preference number: 6 (lower is better)
Translates to: GPQASLCAGLGR*ISAHMLTIPWR
Trigger: ACGCCATGGTATTGTCAGCATGTGTGCAGAAATCCACCGCCCTAACCCAGCACAGAGGGAAGCCTGTGGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CAA 90 bp CTGTTGATCTTCTGCGGCTGCAAAGGGATGATGGGGATGACAGTATaGCAGAGAGACTTGCAGAGCGGGCATAGGTACTCGCCGCTCTCC +
Preference number: 6 (lower is better)
Translates to: LLIFCGCKGMMGMTV*QRDLQSGHRYSPLS
Trigger: GGAGAGCGGCGAGTACCTATGCCCGCTCTGCAAGTCTCTCTGCAATACTGTCATCCCCATCATCCCTTTGCAGCCGCAGAAGATCAACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 72 bp TTCATCCAGGAGCCAAGGCGCAGAGCGAATTTCTGGTaGGCCATAACCACGGAGTGCAGCACTTCCACATGG +
Preference number: 6 (lower is better)
Translates to: FIQEPRRRANFW*AITTECSTSTW
Trigger: CCATGTGGAAGTGCTGCACTCCGTGGTTATGGCTCACCAGAAATTCGCTCTGCGCCTTGGCTCCTGGATGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 72 bp GACAGGAGCCGAGCCAGATGTTTGTGTATCAGGACCTaGGGGCAGGTAGTCCTCTGTGCAACTGCAAACTGC +
Preference number: 6 (lower is better)
Translates to: DRSRARCLCIRT*GQVVLCATANC
Trigger: GCAGTTTGCAGTTGCACAGAGGACTACCTGCCCTCAGGTCCTGATACACAAACATCTGGCTCGGCTCCTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS GCA 72 bp ACTCGCCGCTCTCCAGGTCAAACAGGTCTACGTGAATaGGCTGCTGCGAGCTCAGCTGCACAGCTTCAAAAT +
Preference number: 6 (lower is better)
Translates to: TRRSPGQTGLRE*AAASSAAQLQN
Trigger: ATTTTGAAGCTGTGCAGCTGAGCTCGCAGCAGCGCATTCACGTAGACCTGTTTGACCTGGAGAGCGGCGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CCA 72 bp ATTCATCCAAGTAAGGGGCTGGGTAGGCACAGCCTCTaGCTTTTCCTTCCACCAGGACCACCCTGCATTCTC +
Preference number: 6 (lower is better)
Translates to: IHPSKGLGRHSL*LFLPPGPPCIL
Trigger: GAGAATGCAGGGTGGTCCTGGTGGAAGGAAAAGCCAGAGGCTGTGCCTACCCAGCCCCTTACTTGGATGAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CAA 72 bp AAAGGGATGATGGGGATGACAGTATTGCAGAGAGACTaGCAGAGCGGGCATAGGTACTCGCCGCTCTCCAGG +
Preference number: 6 (lower is better)
Translates to: KGMMGMTVLQRD*QSGHRYSPLSR
Trigger: CCTGGAGAGCGGCGAGTACCTATGCCCGCTCTGCAAGTCTCTCTGCAATACTGTCATCCCCATCATCCCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 72 bp CTTCATCTCCCAACAGGTTTTCGATTGCCTGGATGGTaGACGCACACGTGCTCCAGGTCATCATGGGCACTC +
Preference number: 6 (lower is better)
Translates to: LHLPTGFRLPGW*THTCSRSSWAL
Trigger: GAGTGCCCATGATGACCTGGAGCACGTGTGCGTTCACCATCCAGGCAATCGAAAACCTGTTGGGAGATGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CAA 72 bp CAGGCAGCGCAGCGGGTACTCCACCAGGACCTCTACTaGAAAGCCGTCAAAAGGCACAAATTCATGCAGTCT +
Preference number: 6 (lower is better)
Translates to: QAAQRVLHQDLY*KAVKRHKFMQS
Trigger: AGACTGCATGAATTTGTGCCTTTTGACGGCTTTCAAGTAGAGGTCCTGGTGGAGTACCCGCTGCGCTGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CAA 90 bp CTGAGGATGTACATCATAACATCACAGCTGAGCAGGTTGACTACTTaGCTGAAAGCAGGGCAGAACTCCGGAGGAGGTGGCGGCGGCAAT +
Preference number: 6 (lower is better)
Translates to: LRMYIITSQLSRLTT*LKAGQNSGGGGGGN
Trigger: ATTGCCGCCGCCACCTCCTCCGGAGTTCTGCCCTGCTTTCAGCAAAGTAGTCAACCTGCTCAGCTGTGATGTTATGATGTACATCCTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 72 bp AGGCAGCGCAGCGGGTACTCCACCAGGACCTCTACTTaGAAGCCGTCAAAAGGCACAAATTCATGCAGTCTT +
Preference number: 6 (lower is better)
Translates to: RQRSGYSTRTST*KPSKGTNSCSL
Trigger: AAGACTGCATGAATTTGTGCCTTTTGACGGCTTTCAAGTAGAGGTCCTGGTGGAGTACCCGCTGCGCTGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS GCA 72 bp TGGCTCCGAGCAATCTCTTCTATAATGCAGTGCTGTTaGCAGACCAAATGCAGCTTCCGATACCGCTCCCGA +
Preference number: 6 (lower is better)
Translates to: WLRAISSIMQCC*QTKCSFRYRSR
Trigger: TCGGGAGCGGTATCGGAAGCTGCATTTGGTCTGGCAACAGCACTGCATTATAGAAGAGATTGCTCGGAGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS GCA 72 bp GTCTCCTGGCTCCGAGCAATCTCTTCTATAATGCAGTaGTGTTGCCAGACCAAATGCAGCTTCCGATACCGC +
Preference number: 6 (lower is better)
Translates to: VSWLRAISSIMQ*CCQTKCSFRYR
Trigger: GCGGTATCGGAAGCTGCATTTGGTCTGGCAACAGCACTGCATTATAGAAGAGATTGCTCGGAGCCAGGAGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CCA 72 bp TGCACGGACAGGGCGGTTATGGAGATGCTTCTCTCGTaGTCGTCGCTGATGTACTCTTTCTGCAGCTGTTTA +
Preference number: 6 (lower is better)
Translates to: CTDRAVMEMLLS*SSLMYSFCSCL
Trigger: TAAACAGCTGCAGAAAGAGTACATCAGCGACGACCACGAGAGAAGCATCTCCATAACCGCCCTGTCCGTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CCA 72 bp TGCTGCTTCTCTTCCAGCAAGCCCAGTGCCAATATATaGAACGCCATCTGCAGCATCCCTTCTGTCCACAGA +
Preference number: 6 (lower is better)
Translates to: CCFSSSKPSANI*NAICSIPSVHR
Trigger: TCTGTGGACAGAAGGGATGCTGCAGATGGCGTTCCATATATTGGCACTGGGCTTGCTGGAAGAGAAGCAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CAA 90 bp TATTCTGGCAAGGACAGTCTGTATCCACCGGGCCAAGGTCAAAAGTaGAGCAAGAGCCTCCGCATTCTCACTGTTGATCTTCTGCGGCTG +
Preference number: 6 (lower is better)
Translates to: YSGKDSLYPPGQGQK*SKSLRILTVDLLRL
Trigger: CAGCCGCAGAAGATCAACAGTGAGAATGCGGAGGCTCTTGCTCAACTTTTGACCTTGGCCCGGTGGATACAGACTGTCCTTGCCAGAATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CAA 90 bp AAGATGGTCCTGAGGATGTACATCATAACATCACAGCTGAGCAGGTaGACTACTTTGCTGAAAGCAGGGCAGAACTCCGGAGGAGGTGGC +
Preference number: 6 (lower is better)
Translates to: KMVLRMYIITSQLSR*TTLLKAGQNSGGGG
Trigger: GCCACCTCCTCCGGAGTTCTGCCCTGCTTTCAGCAAAGTAGTCAACCTGCTCAGCTGTGATGTTATGATGTACATCCTCAGGACCATCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 72 bp AGGACAGTCTGTATCCACCGGGCCAAGGTCAAAAGTTaGGCAAGAGCCTCCGCATTCTCACTGTTGATCTTC +
Preference number: 6 (lower is better)
Translates to: RTVCIHRAKVKS*ARASAFSLLIF
Trigger: GAAGATCAACAGTGAGAATGCGGAGGCTCTTGCTCAACTTTTGACCTTGGCCCGGTGGATACAGACTGTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS GCA 72 bp GGCTTCCCTCTGTGCTGGGTTAGGGCGGTGGATTTCTaGACACATGCTGACAATACCATGGCGTTATTTTCT +
Preference number: 6 (lower is better)
Translates to: GFPLCWVRAVDF*THADNTMALFS
Trigger: AGAAAATAACGCCATGGTATTGTCAGCATGTGTGCAGAAATCCACCGCCCTAACCCAGCACAGAGGGAAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS GCA 72 bp AGAGCCTCCGCATTCTCACTGTTGATCTTCTGCGGCTaGAAAGGGATGATGGGGATGACAGTATTGCAGAGA +
Preference number: 6 (lower is better)
Translates to: RASAFSLLIFCG*KGMMGMTVLQR
Trigger: TCTCTGCAATACTGTCATCCCCATCATCCCTTTGCAGCCGCAGAAGATCAACAGTGAGAATGCGGAGGCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CAA 72 bp TACATCATAACATCACAGCTGAGCAGGTTGACTACTTaGCTGAAAGCAGGGCAGAACTCCGGAGGAGGTGGC +
Preference number: 6 (lower is better)
Translates to: YIITSQLSRLTT*LKAGQNSGGGG
Trigger: GCCACCTCCTCCGGAGTTCTGCCCTGCTTTCAGCAAAGTAGTCAACCTGCTCAGCTGTGATGTTATGATGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 72 bp ACCAAATGCAGCTTCCGATACCGCTCCCGAGATAAATaGAGTGGGTTTCCTCTCTTTAGCCCTGGGTCTGTT +
Preference number: 6 (lower is better)
Translates to: TKCSFRYRSRDK*SGFPLFSPGSV
Trigger: AACAGACCCAGGGCTAAAGAGAGGAAACCCACTTCATTTATCTCGGGAGCGGTATCGGAAGCTGCATTTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS GCA 72 bp CATCCCTTCTGTCCACAGATTAGACTCCATGTCCACTaGCCGCTCAAAGATGGTCCTGAGGATGTACATCAT +
Preference number: 6 (lower is better)
Translates to: HPFCPQIRLHVH*PLKDGPEDVHH
Trigger: ATGATGTACATCCTCAGGACCATCTTTGAGCGGGCAGTGGACATGGAGTCTAATCTGTGGACAGAAGGGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CAA 72 bp AAGGACAGTCTGTATCCACCGGGCCAAGGTCAAAAGTaGAGCAAGAGCCTCCGCATTCTCACTGTTGATCTT +
Preference number: 6 (lower is better)
Translates to: KDSLYPPGQGQK*SKSLRILTVDL
Trigger: AAGATCAACAGTGAGAATGCGGAGGCTCTTGCTCAACTTTTGACCTTGGCCCGGTGGATACAGACTGTCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CAA 72 bp GGGTACCTGACCACAGCACTTTTCTGCTTCAAAGACTaGAGTAAGGCAGGATCTCCACACCACCTCTGTAGT +
Preference number: 6 (lower is better)
Translates to: GYLTTALFCFKD*SKAGSPHHLCS
Trigger: ACTACAGAGGTGGTGTGGAGATCCTGCCTTACTCAAGTCTTTGAAGCAGAAAAGTGCTGTGGTCAGGTACCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CAA 90 bp CTGTATAGCGATGGCAGCCTCCCAGTCAGGGTCCACTTCAATGTGTaGTCCAACTTGTCTTCTGATTTCTTCCATTCCCTGCATACAGGT +
Preference number: 6 (lower is better)
Translates to: LYSDGSLPVRVHFNV*SNLSSDFFHSLHTG
Trigger: ACCTGTATGCAGGGAATGGAAGAAATCAGAAGACAAGTTGGACAACACATTGAAGTGGACCCTGACTGGGAGGCTGCCATCGCTATACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CAA 72 bp CTGAGGATGTACATCATAACATCACAGCTGAGCAGGTaGACTACTTTGCTGAAAGCAGGGCAGAACTCCGGA +
Preference number: 6 (lower is better)
Translates to: LRMYIITSQLSR*TTLLKAGQNSG
Trigger: TCCGGAGTTCTGCCCTGCTTTCAGCAAAGTAGTCAACCTGCTCAGCTGTGATGTTATGATGTACATCCTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CAA 90 bp CTTTTTCTAGGGTACCTGACCACAGCACTTTTCTGCTTCAAAGACTaGAGTAAGGCAGGATCTCCACACCACCTCTGTAGTAAGGGCCTT +
Preference number: 6 (lower is better)
Translates to: LFLGYLTTALFCFKD*SKAGSPHHLCSKGL
Trigger: AAGGCCCTTACTACAGAGGTGGTGTGGAGATCCTGCCTTACTCAAGTCTTTGAAGCAGAAAAGTGCTGTGGTCAGGTACCCTAGAAAAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CAA 90 bp GATGGCAGCCTCCCAGTCAGGGTCCACTTCAATGTGTTGTCCAACTaGTCTTCTGATTTCTTCCATTCCCTGCATACAGGTAAGAATCTT +
Preference number: 6 (lower is better)
Translates to: DGSLPVRVHFNVLSN*SSDFFHSLHTGKNL
Trigger: AAGATTCTTACCTGTATGCAGGGAATGGAAGAAATCAGAAGACAAGTTGGACAACACATTGAAGTGGACCCTGACTGGGAGGCTGCCATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 72 bp GGGCGGTTATGGAGATGCTTCTCTCGTGGTCGTCGCTaGTGTACTCTTTCTGCAGCTGTTTATAATACTTCA +
Preference number: 6 (lower is better)
Translates to: GRLWRCFSRGRR*CTLSAAVYNTS
Trigger: TGAAGTATTATAAACAGCTGCAGAAAGAGTACATCAGCGACGACCACGAGAGAAGCATCTCCATAACCGCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 72 bp TTCCTGTATAAGTTCCATGTGCCAAGTCTGGATCCATaGAAAGAGGGTCCAGTGTTTCCCCTAAGTGGTCCA +
Preference number: 6 (lower is better)
Translates to: FLYKFHVPSLDP*KEGPVFPLSGP
Trigger: TGGACCACTTAGGGGAAACACTGGACCCTCTTTTCATGGATCCAGACTTGGCACATGGAACTTATACAGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS GCA 72 bp CACCACTCTTGGAACATGAGCAAAATATTCTTTAGTTaGATCTGTATAGCGATGGCAGCCTCCCAGTCAGGG +
Preference number: 6 (lower is better)
Translates to: HHSWNMSKIFFS*ICIAMAASQSG
Trigger: CCCTGACTGGGAGGCTGCCATCGCTATACAGATGCAACTAAAGAATATTTTGCTCATGTTCCAAGAGTGGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 72 bp CCTGAAGACAGATCTGTATCTGTTGTAAGGAGTATCTaGAGCATGTGCGCCATGGTGATCAGATGGAAGAGA +
Preference number: 6 (lower is better)
Translates to: PEDRSVSVVRSI*SMCAMVIRWKR
Trigger: TCTCTTCCATCTGATCACCATGGCGCACATGCTTCAGATACTCCTTACAACAGATACAGATCTGTCTTCAGG
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS GCA 72 bp AGAATCTTCAGAAAAGACCGGAAACCTTCCAGGAACTaGGCTCTTAATCGTTCTGTCCATATGACAGGCTTG +
Preference number: 6 (lower is better)
Translates to: RIFRKDRKPSRN*ALNRSVHMTGL
Trigger: CAAGCCTGTCATATGGACAGAACGATTAAGAGCGCAGTTCCTGGAAGGTTTCCGGTCTTTTCTGAAGATTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS GCA 72 bp CATTACATGACCACAGCTTCCTGTATAAGTTCCATGTaGCAAGTCTGGATCCATGAAAAGAGGGTCCAGTGT +
Preference number: 6 (lower is better)
Translates to: HYMTTASCISSM*QVWIHEKRVQC
Trigger: ACACTGGACCCTCTTTTCATGGATCCAGACTTGGCACATGGAACTTATACAGGAAGCTGTGGTCATGTAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS GCA 72 bp CCAGGACCACCCTGCATTCTCGGATTTTTAAGAAAATaGAGACTCCAGCACCACAATGAAGCGCATGAAAAA +
Preference number: 6 (lower is better)
Translates to: PGPPCILGFLRK*RLQHHNEAHEK
Trigger: TTTTTCATGCGCTTCATTGTGGTGCTGGAGTCTGCATTTTCTTAAAAATCCGAGAATGCAGGGTGGTCCTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CCA 72 bp CAGGATCTCCACACCACCTCTGTAGTAAGGGCCTTATaGTATCCCAATATTCCTGGAAAAGCAGGAACAAAT +
Preference number: 6 (lower is better)
Translates to: QDLHTTSVVRAL*YPNIPGKAGTN
Trigger: ATTTGTTCCTGCTTTTCCAGGAATATTGGGATACCATAAGGCCCTTACTACAGAGGTGGTGTGGAGATCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CAA 72 bp GGAAGCAGTCCATACAGAGCACACACGTTGGATCAATaGCACAATCCCTACAGGAATATGTTGTTTCTCCAC +
Preference number: 6 (lower is better)
Translates to: GSSPYRAHTLDQ*HNPYRNMLFLH
Trigger: GTGGAGAAACAACATATTCCTGTAGGGATTGTGCAATTGATCCAACGTGTGTGCTCTGTATGGACTGCTTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS GCA 72 bp TTTCTTTTTCTAGGGTACCTGACCACAGCACTTTTCTaGTTCAAAGACTTGAGTAAGGCAGGATCTCCACAC +
Preference number: 6 (lower is better)
Translates to: FLFLGYLTTALF*FKDLSKAGSPH
Trigger: GTGTGGAGATCCTGCCTTACTCAAGTCTTTGAAGCAGAAAAGTGCTGTGGTCAGGTACCCTAGAAAAAGAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CAA 72 bp CACTACTTTGGAAGCAGTCCATACAGAGCACACACGTaGGATCAATTGCACAATCCCTACAGGAATATGTTG +
Preference number: 6 (lower is better)
Translates to: HYFGSSPYRAHT*DQLHNPYRNML
Trigger: CAACATATTCCTGTAGGGATTGTGCAATTGATCCAACGTGTGTGCTCTGTATGGACTGCTTCCAAAGTAGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 72 bp CCGGATCCTCTCCAAATAAGTACCACTCCAAAGGAGTaGGTATTGACATCTGTACACTCTCTTCTTGCTTTT +
Preference number: 6 (lower is better)
Translates to: PDPLQISTTPKE*VLTSVHSLLAF
Trigger: AAAAGCAAGAAGAGAGTGTACAGATGTCAATACTCACTCCTTTGGAGTGGTACTTATTTGGAGAGGATCCGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 72 bp TTTAACATCTTGATAATAGAAAACCTGGCTGATGAGTaGGAGCCCGTTTCTTCGCCACATCTCAGCAACAAC +
Preference number: 6 (lower is better)
Translates to: FNILIIENLADE*EPVSSPHLSNN
Trigger: GTTGTTGCTGAGATGTGGCGAAGAAACGGGCTCTCACTCATCAGCCAGGTTTTCTATTATCAAGATGTTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 72 bp ATGGCACTATGTGGCATGGGCTCAATGCAAAGTAAGTaGGTAATCTCTCTCATTATAACCTCCTCTCTGGTA +
Preference number: 6 (lower is better)
Translates to: MALCGMGSMQSK*VISLIITSSLV
Trigger: TACCAGAGAGGAGGTTATAATGAGAGAGATTACTCACTTACTTTGCATTGAGCCCATGCCACATAGTGCCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CCA 72 bp ACTACTTTGGAAGCAGTCCATACAGAGCACACACGTTaGATCAATTGCACAATCCCTACAGGAATATGTTGT +
Preference number: 6 (lower is better)
Translates to: TTLEAVHTEHTR*INCTIPTGICC
Trigger: ACAACATATTCCTGTAGGGATTGTGCAATTGATCCAACGTGTGTGCTCTGTATGGACTGCTTCCAAAGTAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CCA 72 bp TTTCATTATTTTCGTTCTCAGGTAGGTTTCTGGCGATaGCACTATGTGGCATGGGCTCAATGCAAAGTAAGT +
Preference number: 6 (lower is better)
Translates to: FHYFRSQVGFWR*HYVAWAQCKVS
Trigger: ACTTACTTTGCATTGAGCCCATGCCACATAGTGCCATCGCCAGAAACCTACCTGAGAACGAAAATAATGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CAA 90 bp GAGTCTTCCTTCCCTGTTACTTCTGACGTATTATCATACATGAGTTaGTGGGTTTCAATGAAGTTTTTCTGTAAGGCAGACATCTGGGCC +
Preference number: 6 (lower is better)
Translates to: ESSFPVTSDVLSYMS*WVSMKFFCKADIWA
Trigger: GGCCCAGATGTCTGCCTTACAGAAAAACTTCATTGAAACCCACAAACTCATGTATGATAATACGTCAGAAGTAACAGGGAAGGAAGACTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CCA 72 bp ATCCCCCATTCCTTGATTAAACAAGACAGGAACTGCTaGGGCTTCTCCTTTAGCATGCTTTATATTATAACC +
Preference number: 6 (lower is better)
Translates to: IPHSLIKQDRNC*GFSFSMLYIIT
Trigger: GGTTATAATATAAAGCATGCTAAAGGAGAAGCCCCAGCAGTTCCTGTCTTGTTTAATCAAGGAATGGGGGAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CAA 72 bp ATGCATCTTGTAACGATGGTTTTTATGAACACTACTTaGGAAGCAGTCCATACAGAGCACACACGTTGGATC +
Preference number: 6 (lower is better)
Translates to: MHLVTMVFMNTT*EAVHTEHTRWI
Trigger: GATCCAACGTGTGTGCTCTGTATGGACTGCTTCCAAAGTAGTGTTCATAAAAACCATCGTTACAAGATGCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CAA 90 bp GGATCAATTGCACAATCCCTACAGGAATATGTTGTTTCTCCACTTTaGAAAACCTTCCCACACAACTGGAACGCTCCACTGTGTTTTAAT +
Preference number: 6 (lower is better)
Translates to: GSIAQSLQEYVVSPL*KTFPHNWNAPLCFN
Trigger: ATTAAAACACAGTGGAGCGTTCCAGTTGTGTGGGAAGGTTTTCAAAAGTGGAGAAACAACATATTCCTGTAGGGATTGTGCAATTGATCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CAA 90 bp TTTTATGAACACTACTTTGGAAGCAGTCCATACAGAGCACACACGTaGGATCAATTGCACAATCCCTACAGGAATATGTTGTTTCTCCAC +
Preference number: 6 (lower is better)
Translates to: FYEHYFGSSPYRAHT*DQLHNPYRNMLFLH
Trigger: GTGGAGAAACAACATATTCCTGTAGGGATTGTGCAATTGATCCAACGTGTGTGCTCTGTATGGACTGCTTCCAAAGTAGTGTTCATAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CAA 90 bp AGTAGAAGTATGCATCTTGTAACGATGGTTTTTATGAACACTACTTaGGAAGCAGTCCATACAGAGCACACACGTTGGATCAATTGCACA +
Preference number: 6 (lower is better)
Translates to: SRSMHLVTMVFMNTT*EAVHTEHTRWINCT
Trigger: TGTGCAATTGATCCAACGTGTGTGCTCTGTATGGACTGCTTCCAAAGTAGTGTTCATAAAAACCATCGTTACAAGATGCATACTTCTACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 72 bp ATGTATTTTATCACCGAAGGGAATATTCTCCTGGCTTaGGCAATCACCTCTTCATTCAATGGGCAATGTAAG +
Preference number: 6 (lower is better)
Translates to: MYFITEGNILLA*AITSSFNGQCK
Trigger: CTTACATTGCCCATTGAATGAAGAGGTGATTGCTCAAGCCAGGAGAATATTCCCTTCGGTGATAAAATACAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 72 bp CTCTTCCCAGTTTGTCCTGGCTATAACCCTGGAAGTTaGATTTATTGTTCCTGTCCAAGTATTCAGGTAAAA +
Preference number: 6 (lower is better)
Translates to: LFPVCPGYNPGS*IYCSCPSIQVK
Trigger: TTTTACCTGAATACTTGGACAGGAACAATAAATTCAACTTCCAGGGTTATAGCCAGGACAAACTGGGAAGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CCA 72 bp CTCTGTAGTAAGGGCCTTATGGTATCCCAATATTCCTaGAAAAGCAGGAACAAATTTGTGGGTAAAGATAGA +
Preference number: 6 (lower is better)
Translates to: LCSKGLMVSQYS*KSRNKFVGKDR
Trigger: TCTATCTTTACCCACAAATTTGTTCCTGCTTTTCCAGGAATATTGGGATACCATAAGGCCCTTACTACAGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CAA 72 bp TTTGTAGGATTTGGTTTCCAGACTATGACCGCACAATaGCACTACTGTCTTGGTACTGGACATGAAATTTGT +
Preference number: 6 (lower is better)
Translates to: FVGFGFQTMTAQ*HYCLGTGHEIC
Trigger: ACAAATTTCATGTCCAGTACCAAGACAGTAGTGCAATTGTGCGGTCATAGTCTGGAAACCAAATCCTACAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CAA 72 bp TGGCCCGACACACCTGGTTTCTTAAATGTGGCCACTTaGTTTATGACATTCTCTAAGCCAGTTTCATTATTT +
Preference number: 6 (lower is better)
Translates to: WPDTPGFLNVAT*FMTFSKPVSLF
Trigger: AAATAATGAAACTGGCTTAGAGAATGTCATAAACAAAGTGGCCACATTTAAGAAACCAGGTGTGTCGGGCCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 72 bp TGTAGATCACATGATCATACGAATGGTGCTCATCGTTaGAAAGGACACAATAGTATCGTTCATTTTTCTCCC +
Preference number: 6 (lower is better)
Translates to: CRSHDHTNGAHR*KGHNSIVHFSP
Trigger: GGGAGAAAAATGAACGATACTATTGTGTCCTTTTCAACGATGAGCACCATTCGTATGATCATGTGATCTACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 72 bp AATTTGTGGGTAAAGATAGATAGCTACAGAGTGCACTaGATTCTCCTTCAGCAGAATTGGCAAACAGTTCTT +
Preference number: 6 (lower is better)
Translates to: NLWVKIDSYRVH*ILLQQNWQTVL
Trigger: AAGAACTGTTTGCCAATTCTGCTGAAGGAGAATTCAGTGCACTCTGTAGCTATCTATCTTTACCCACAAATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CAA 72 bp AACTGCGCTCTTAATCGTTCTGTCCATATGACAGGCTaGCTAATCAGGATATACTTTAGGTCACATATAACT +
Preference number: 6 (lower is better)
Translates to: NCALNRSVHMTG*LIRIYFRSHIT
Trigger: AGTTATATGTGACCTAAAGTATATCCTGATTAGCAAGCCTGTCATATGGACAGAACGATTAAGAGCGCAGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS TCA 72 bp CCACTCCAGGTACATAACGTTCTCCCACAATATAGATaGGGACCTGAAGCATTTCTTCTATTAATGTATTAT +
Preference number: 6 (lower is better)
Translates to: PLQVHNVLPQYR*GPEAFLLLMYY
Trigger: ATAATACATTAATAGAAGAAATGCTTCAGGTCCTCATCTATATTGTGGGAGAACGTTATGTACCTGGAGTGG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6
CDS CAA 72 bp TTCCCTGTTACTTCTGACGTATTATCATACATGAGTTaGTGGGTTTCAATGAAGTTTTTCTGTAAGGCAGAC +
Preference number: 6 (lower is better)
Translates to: FPVTSDVLSYMS*WVSMKFFCKAD
Trigger: GTCTGCCTTACAGAAAAACTTCATTGAAACCCACAAACTCATGTATGATAATACGTCAGAAGTAACAGGGAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028728.6