Pregenerated sensors for UBQLN5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000055643Ensembl transcript IDs: ENSMUST00000053743.6
Found 83 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | ATAATTCGAGGAAGAGGAATTTCTAAAATAAGTGCCTTCCATCCCCTTCTCCCTTTCCTCCCCACAGAATaGTGCAATCGTGGGCATCAA | + |
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Preference number: 2 (lower is better) Translates to: IIRGRGISKISAFHPLLPFLPTE*CNRGHQ Trigger: TTGATGCCCACGATTGCACCATTCTGTGGGGAGGAA...AGGGAGAAGGGGATGGAAGGCACTTATTTTAGAAATTCCTCTTCCTCGAATTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR TCA 90 bp | TTCTCCCTTTTCCTTCCTCCCCACAGAATGGTGCAATCGTGGGCATCAAATGGAGCGCTCGAGGGTTGGTaGGGATGGGGAGAAGTGGCA | + |
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Preference number: 4 (lower is better) Translates to: FSLFLPPHRMVQSWASNGALEGW*GWGEVA Trigger: TGCCACTTCTCCCCATCCTCACCAACCCTCGAGCGC...TCCATTTGATGCCCACGATTGCACCATTCTGTGGGGAGGAAGGAAAAGGGAGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR GCA 90 bp | TCCCTTTTCCTTCCTCCCCACAGAATGGTGCAATCGTGGGCATCAAATGGAGAGCAGCTGGCTGTCCCCTaGTTCTTCCCTAGCTCGTGC | + |
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Preference number: 4 (lower is better) Translates to: SLFLPPHRMVQSWASNGEQLAVP*FFPSSC Trigger: GCACGAGCTAGGGAAGAAGCAGGGGACAGCCAGCTG...CTCTCCATTTGATGCCCACGATTGCACCATTCTGTGGGGAGGAAGGAAAAGGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR GCA 90 bp | TCTCCCTTTTCCTTCCTCCCCACAGAATGGTGCAATCGTGGGCATCAAATGGAGATCTGTAGCAATGCCTaGAGCGCTCGAGGGTTGGTG | + |
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Preference number: 4 (lower is better) Translates to: SPFSFLPTEWCNRGHQMEICSNA*SARGLV Trigger: CACCAACCCTCGAGCGCTGCAGGCATTGCTACAGAT...CTCCATTTGATGCCCACGATTGCACCATTCTGTGGGGAGGAAGGAAAAGGGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR TCA 90 bp | TCTCCCTTTTCCTTCCTCCCCACAGAATGGTGCAATCGTGGGCATCAAATGGAGGGGTTTCCGGAAATTTaGGAGCTGGGTCCCGTTTCT | + |
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Preference number: 4 (lower is better) Translates to: SPFSFLPTEWCNRGHQMEGFPEI*ELGPVS Trigger: AGAAACGGGACCCAGCTCTCAAATTTCCGGAAACCC...CTCCATTTGATGCCCACGATTGCACCATTCTGTGGGGAGGAAGGAAAAGGGAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR CCA 90 bp | TTCTCCCTTTTCCTTCCTCCCCACAGAATGGTGCAATCGTGGGCATCAAATGGACTACCCCTAGTTTCTTaGGCTCCTCTAGCCCCACGT | + |
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Preference number: 4 (lower is better) Translates to: FSLFLPPHRMVQSWASNGLPLVS*APLAPR Trigger: ACGTGGGGCTAGAGGAGCCCAAGAAACTAGGGGTAG...TCCATTTGATGCCCACGATTGCACCATTCTGTGGGGAGGAAGGAAAAGGGAGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR CCA 90 bp | TCTCCCTTTTCCTTCCTCCCCACAGAATGGTGCAATCGTGGGCATCAAATGGAGGACCTCACTACCACATaGACTGTAGAGCCATCAAGA | + |
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Preference number: 4 (lower is better) Translates to: SPFSFLPTEWCNRGHQMEDLTTT*TVEPSR Trigger: TCTTGATGGCTCTACAGTCCATGTGGTAGTGAGGTC...CTCCATTTGATGCCCACGATTGCACCATTCTGTGGGGAGGAAGGAAAAGGGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR CCA 90 bp | TTCTCCCTTTTCCTTCCTCCCCACAGAATGGTGCAATCGTGGGCATCAAATGGAATCTCAATGGCGGCGTaGATATCTCCATCTGTGGCT | + |
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Preference number: 4 (lower is better) Translates to: FSLFLPPHRMVQSWASNGISMAA*ISPSVA Trigger: AGCCACAGATGGAGATATCCACGCCGCCATTGAGAT...TCCATTTGATGCCCACGATTGCACCATTCTGTGGGGAGGAAGGAAAAGGGAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR CCA 90 bp | TTTAATGTAGAACAGGTTTGGGCAGTGAGAGAAGGGCTGTCCAAATATGCTCATGGGTATACTGGCCTGTaGGGCCTACCAGAGTTCCTG | + |
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Preference number: 4 (lower is better) Translates to: FNVEQVWAVREGLSKYAHGYTGL*GLPEFL Trigger: CAGGAACTCTGGTAGGCCCCACAGGCCAGTATACCC...ATGAGCATATTTGGACAGCCCTTCTCTCACTGCCCAAACCTGTTCTACATTAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR CCA 90 bp | AATGTAGAACAGGTTTGGGCAGTGAGAGAAGGGCTGTCCAAATATGCTCATAATGGCTGCTGGCTTTCTTaGCAGGGGATATCTGAGCCT | + |
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Preference number: 4 (lower is better) Translates to: NVEQVWAVREGLSKYAHNGCWLS*QGISEP Trigger: AGGCTCAGATATCCCCTGCCAAGAAAGCCAGCAGCC...ATTATGAGCATATTTGGACAGCCCTTCTCTCACTGCCCAAACCTGTTCTACATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR CCA 90 bp | AATGTAGAACAGGTTTGGGCAGTGAGAGAAGGGCTGTCCAAATATGCTCATAATGTGGGCAGTGCAGTTTaGGAAGACTGGGAACAGGCT | + |
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Preference number: 4 (lower is better) Translates to: NVEQVWAVREGLSKYAHNVGSAV*EDWEQA Trigger: AGCCTGTTCCCAGTCTTCCCAAACTGCACTGCCCAC...ATTATGAGCATATTTGGACAGCCCTTCTCTCACTGCCCAAACCTGTTCTACATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR GCA 90 bp | TTCTTTAATGTAGAACAGGTTTGGGCAGTGAGAGAAGGGCTGTCCAAATATGCTGGATCTTCCAAGAGTTaGACCACAGACTCTGGTGCC | + |
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Preference number: 4 (lower is better) Translates to: FFNVEQVWAVREGLSKYAGSSKS*TTDSGA Trigger: GGCACCAGAGTCTGTGGTGCAACTCTTGGAAGATCC...AGCATATTTGGACAGCCCTTCTCTCACTGCCCAAACCTGTTCTACATTAAAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR GCA 90 bp | CTCATAATTCGAGGAAGAGGAATTTCTAAAATAAGTGCCTTCCATCCCCTTCTCGAGGGATGTGGGCAGTaGAGTTTGGGAAGACTGGGA | + |
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Preference number: 4 (lower is better) Translates to: LIIRGRGISKISAFHPLLEGCGQ*SLGRLG Trigger: TCCCAGTCTTCCCAAACTGCACTGCCCACATCCCTC...GAGAAGGGGATGGAAGGCACTTATTTTAGAAATTCCTCTTCCTCGAATTATGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR CCA 90 bp | TTCTCCCTTTTCCTTCCTCCCCACAGAATGGTGCAATCGTGGGCATCAAATGGAGTAGTATCTTCTCTATaGGCTTGTCTTCTACCCCTA | + |
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Preference number: 4 (lower is better) Translates to: FSLFLPPHRMVQSWASNGVVSSL*ACLLPL Trigger: TAGGGGTAGAAGACAAGCCCATAGAGAAGATACTAC...TCCATTTGATGCCCACGATTGCACCATTCTGTGGGGAGGAAGGAAAAGGGAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR GCA 90 bp | CTCATAATTCGAGGAAGAGGAATTTCTAAAATAAGTGCCTTCCATCCCCTTCTCTGTACTGACCTCTTGTaGCAAGGTCCTGACCAGAGG | + |
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Preference number: 4 (lower is better) Translates to: LIIRGRGISKISAFHPLLCTDLL*QGPDQR Trigger: CCTCTGGTCAGGACCTTGGCACAAGAGGTCAGTACA...GAGAAGGGGATGGAAGGCACTTATTTTAGAAATTCCTCTTCCTCGAATTATGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR CCA 90 bp | TTTAATGTAGAACAGGTTTGGGCAGTGAGAGAAGGGCTGTCCAAATATGCTCATACTATGCCCTTGACCTaGCTAACTCCTCCTGTACTG | + |
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Preference number: 4 (lower is better) Translates to: FNVEQVWAVREGLSKYAHTMPLT*LTPPVL Trigger: CAGTACAGGAGGAGTTAGCCAGGTCAAGGGCATAGT...ATGAGCATATTTGGACAGCCCTTCTCTCACTGCCCAAACCTGTTCTACATTAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR CCA 90 bp | AATGTAGAACAGGTTTGGGCAGTGAGAGAAGGGCTGTCCAAATATGCTCATAATGTCGGCACCCTAAACTaGCCTGACTTGAAACTATGC | + |
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Preference number: 4 (lower is better) Translates to: NVEQVWAVREGLSKYAHNVGTLN*PDLKLC Trigger: GCATAGTTTCAAGTCAGGCCAGTTTAGGGTGCCGAC...ATTATGAGCATATTTGGACAGCCCTTCTCTCACTGCCCAAACCTGTTCTACATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR TCA 90 bp | ATTCGAGGAAGAGGAATTTCTAAAATAAGTGCCTTCCATCCCCTTCTCCCTTTTGAGGTTTCCGGAATGTaGACGCCATTGGCATGTTTC | + |
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Preference number: 4 (lower is better) Translates to: IRGRGISKISAFHPLLPFEVSGM*TPLACF Trigger: GAAACATGCCAATGGCGTTCACATTCCGGAAACCTC...AAAAGGGAGAAGGGGATGGAAGGCACTTATTTTAGAAATTCCTCTTCCTCGAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR TCA 90 bp | ATTCGAGGAAGAGGAATTTCTAAAATAAGTGCCTTCCATCCCCTTCTCCCTTTTCACCCTAAACTGGCCTaGCTTGAAACTATGCCCTTG | + |
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Preference number: 4 (lower is better) Translates to: IRGRGISKISAFHPLLPFHPKLA*LETMPL Trigger: CAAGGGCATAGTTTCAAGTCAGGCCAGTTTAGGGTG...AAAAGGGAGAAGGGGATGGAAGGCACTTATTTTAGAAATTCCTCTTCCTCGAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR TCA 90 bp | TTCTTTAATGTAGAACAGGTTTGGGCAGTGAGAGAAGGGCTGTCCAAATATGCTAAGGAATGGAAGAGCTaGAGAAAGGCCAAGGAGTGT | + |
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Preference number: 4 (lower is better) Translates to: FFNVEQVWAVREGLSKYAKEWKS*RKAKEC Trigger: ACACTCCTTGGCCTTTCTTCAGCTCTTCCATTCCTT...AGCATATTTGGACAGCCCTTCTCTCACTGCCCAAACCTGTTCTACATTAAAGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR GCA 90 bp | TTTAATGTAGAACAGGTTTGGGCAGTGAGAGAAGGGCTGTCCAAATATGCTCATGGCATGTTTCTCATTTaGCAGGCCTTGAATCAGAGG | + |
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Preference number: 4 (lower is better) Translates to: FNVEQVWAVREGLSKYAHGMFLI*QALNQR Trigger: CCTCTGATTCAAGGCCTGGCAAATGAGAAACATGCC...ATGAGCATATTTGGACAGCCCTTCTCTCACTGCCCAAACCTGTTCTACATTAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR GCA 90 bp | CTCATAATTCGAGGAAGAGGAATTTCTAAAATAAGTGCCTTCCATCCCCTTCTCAGAGATGGATTCTGCTaGAGGACAGTCAAGGCTAGG | + |
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Preference number: 4 (lower is better) Translates to: LIIRGRGISKISAFHPLLRDGFC*RTVKAR Trigger: CCTAGCCTTGACTGTCCTGCAGCAGAATCCATCTCT...GAGAAGGGGATGGAAGGCACTTATTTTAGAAATTCCTCTTCCTCGAATTATGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR CCA 90 bp | CCAAATATGCTCATAATTCGAGGAAGAGGAATTTCTAAAATAAGTGCCTTCCATCTACCAGACACCAGCTaGCTGTCCCCTGCTTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: PNMLIIRGRGISKISAFHLPDTS*LSPASS Trigger: GGAAGAAGCAGGGGACAGCCAGCTGGTGTCTGGTAG...ATGGAAGGCACTTATTTTAGAAATTCCTCTTCCTCGAATTATGAGCATATTTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR CCA 90 bp | ATTCGAGGAAGAGGAATTTCTAAAATAAGTGCCTTCCATCCCCTTCTCCCTTTTAGCAGTTGGACACGCTaGCTGAAGAAATCAGCTAGG | + |
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Preference number: 4 (lower is better) Translates to: IRGRGISKISAFHPLLPFSSWTR*LKKSAR Trigger: CCTAGCTGATTTCTTCAGCCAGCGTGTCCAACTGCT...AAAAGGGAGAAGGGGATGGAAGGCACTTATTTTAGAAATTCCTCTTCCTCGAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR CCA 90 bp | CCAAATATGCTCATAATTCGAGGAAGAGGAATTTCTAAAATAAGTGCCTTCCATGCCGCAGGCAGCAGTTaGACACGCTGGCTGAAGAAA | + |
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Preference number: 4 (lower is better) Translates to: PNMLIIRGRGISKISAFHAAGSS*TRWLKK Trigger: TTTCTTCAGCCAGCGTGTCCAACTGCTGCCTGCGGC...ATGGAAGGCACTTATTTTAGAAATTCCTCTTCCTCGAATTATGAGCATATTTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR CCA 90 bp | ATTCGAGGAAGAGGAATTTCTAAAATAAGTGCCTTCCATCCCCTTCTCCCTTTTCGGAAATTTGAGAGCTaGGTCCCGTTTCTGTACCGT | + |
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Preference number: 4 (lower is better) Translates to: IRGRGISKISAFHPLLPFRKFES*VPFLYR Trigger: ACGGTACAGAAACGGGACCCAGCTCTCAAATTTCCG...AAAAGGGAGAAGGGGATGGAAGGCACTTATTTTAGAAATTCCTCTTCCTCGAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR TCA 90 bp | ATAATTCGAGGAAGAGGAATTTCTAAAATAAGTGCCTTCCATCCCCTTCTCCCTAGTTCCTGTACAGGCTaGCCCTTTCAAATGAGACCT | + |
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Preference number: 4 (lower is better) Translates to: IIRGRGISKISAFHPLLPSSCTG*PFQMRP Trigger: AGGTCTCATTTGAAAGGGTCAGCCTGTACAGGAACT...AGGGAGAAGGGGATGGAAGGCACTTATTTTAGAAATTCCTCTTCCTCGAATTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR CCA 90 bp | CCAAATATGCTCATAATTCGAGGAAGAGGAATTTCTAAAATAAGTGCCTTCCATTTCTCCAAGGGCTGCTaGCTTTCTTGGCAGGGGATA | + |
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Preference number: 4 (lower is better) Translates to: PNMLIIRGRGISKISAFHFSKGC*LSWQGI Trigger: TATCCCCTGCCAAGAAAGCCAGCAGCCCTTGGAGAA...ATGGAAGGCACTTATTTTAGAAATTCCTCTTCCTCGAATTATGAGCATATTTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR CCA 90 bp | CCAAATATGCTCATAATTCGAGGAAGAGGAATTTCTAAAATAAGTGCCTTCCATACTGGGAACAGGCTCTaGCCAAGGAATGGAAGAGCT | + |
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Preference number: 4 (lower is better) Translates to: PNMLIIRGRGISKISAFHTGNRL*PRNGRA Trigger: AGCTCTTCCATTCCTTGGCCAGAGCCTGTTCCCAGT...ATGGAAGGCACTTATTTTAGAAATTCCTCTTCCTCGAATTATGAGCATATTTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR GCA 90 bp | ATAATTCGAGGAAGAGGAATTTCTAAAATAAGTGCCTTCCATCCCCTTCTCCCTAGGTATTTGGAGATTTaGTTCTTAAAGCGGCGGACA | + |
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Preference number: 4 (lower is better) Translates to: IIRGRGISKISAFHPLLPRYLEI*FLKRRT Trigger: TGTCCGCCGCTTTAAGAAGCAAATCTCCAAATACCT...AGGGAGAAGGGGATGGAAGGCACTTATTTTAGAAATTCCTCTTCCTCGAATTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR GCA 90 bp | AATATGCTCATAATTCGAGGAAGAGGAATTTCTAAAATAAGTGCCTTCCATCCCAGTTGCCAACTGATGTaGCAGAGATGGATTCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: NMLIIRGRGISKISAFHPSCQLM*QRWILL Trigger: CAGCAGAATCCATCTCTGGCACATCAGTTGGCAACT...GGGATGGAAGGCACTTATTTTAGAAATTCCTCTTCCTCGAATTATGAGCATATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR CCA 90 bp | CTCATAATTCGAGGAAGAGGAATTTCTAAAATAAGTGCCTTCCATCCCCTTCTCTCTAAGGCTGAAATGTaGCCTTTAGAAGCCACCAAT | + |
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Preference number: 4 (lower is better) Translates to: LIIRGRGISKISAFHPLLSKAEM*PLEATN Trigger: ATTGGTGGCTTCTAAAGGCCACATTTCAGCCTTAGA...GAGAAGGGGATGGAAGGCACTTATTTTAGAAATTCCTCTTCCTCGAATTATGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR CCA 90 bp | CCAAATATGCTCATAATTCGAGGAAGAGGAATTTCTAAAATAAGTGCCTTCCATGAATGTGAACGCCATTaGCATGTTTCTCATTTGCCA | + |
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Preference number: 4 (lower is better) Translates to: PNMLIIRGRGISKISAFHECERH*HVSHLP Trigger: TGGCAAATGAGAAACATGCCAATGGCGTTCACATTC...ATGGAAGGCACTTATTTTAGAAATTCCTCTTCCTCGAATTATGAGCATATTTGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS TCA 90 bp | CTCGTGGCAGTCCTGTGGGGTCTTGACAGACACTCTGATGATACGTaGGGATGGCTCCCTACCAGACACCAGCTGGCTGTCCCCTGCTTC | + |
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Preference number: 5 (lower is better) Translates to: LVAVLWGLDRHSDDT*GWLPTRHQLAVPCF Trigger: GAAGCAGGGGACAGCCAGCTGGTGTCTGGTAGGGAGCCATCCTCACGTATCATCAGAGTGTCTGTCAAGACCCCACAGGACTGCCACGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS CCA 90 bp | CTGATGGATATCAGAGCAGCTGGGATGCATAGCGTTGTCACCCCCTaGCACGGCTTTCAGGGCCTCCAGCCTCTGCTTGTGTTCCTGGAG | + |
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Preference number: 5 (lower is better) Translates to: LMDIRAAGMHSVVTP*HGFQGLQPLLVFLE Trigger: CTCCAGGAACACAAGCAGAGGCTGGAGGCCCTGAAAGCCGTGCCAGGGGGTGACAACGCTATGCATCCCAGCTGCTCTGATATCCATCAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS CCA 90 bp | TCTTCCAAGAGTTGCACCACAGACTCTGGTGCCGCAGGCAGCAGTTaGACACGCTGGCTGAAGAAATCAGCTAGGTCAGGTGAGGTCCCG | + |
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Preference number: 5 (lower is better) Translates to: SSKSCTTDSGAAGSS*TRWLKKSARSGEVP Trigger: CGGGACCTCACCTGACCTAGCTGATTTCTTCAGCCAGCGTGTCCAACTGCTGCCTGCGGCACCAGAGTCTGTGGTGCAACTCTTGGAAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS GCA 90 bp | AACTATGCCCTTGACCTGGCTAACTCCTCCTGTACTGACCTCTTGTaGCAAGGTCCTGACCAGAGGAGAAGTGGCTGGAATGGTGGTAGG | + |
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Preference number: 5 (lower is better) Translates to: NYALDLANSSCTDLL*QGPDQRRSGWNGGR Trigger: CCTACCACCATTCCAGCCACTTCTCCTCTGGTCAGGACCTTGGCACAAGAGGTCAGTACAGGAGGAGTTAGCCAGGTCAAGGGCATAGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR CAA 90 bp | TCTCCCTTTTCCTTCCTCCCCACAGAATGGTGCAATCGTGGGCATCAAATGGAGTCTACCCCTAGTTTCTaGGGCTCCTCTAGCCCCACG | + |
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Preference number: 5 (lower is better) Translates to: SPFSFLPTEWCNRGHQMESTPSF*GSSSPT Trigger: CGTGGGGCTAGAGGAGCCCAAGAAACTAGGGGTAGA...CTCCATTTGATGCCCACGATTGCACCATTCTGTGGGGAGGAAGGAAAAGGGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS TCA 90 bp | TGGCCTTTAGAAGCCACCAATAAGGCCAGAGTGGAGAGCATGACCTaGTGGATATCAGAGCAGCTGGGATGCATAGCGTTGTCACCCCCT | + |
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Preference number: 5 (lower is better) Translates to: WPLEATNKARVESMT*WISEQLGCIALSPP Trigger: AGGGGGTGACAACGCTATGCATCCCAGCTGCTCTGATATCCATCAGGTCATGCTCTCCACTCTGGCCTTATTGGTGGCTTCTAAAGGCCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS GCA 90 bp | CAGTTCTTGCTGGTACCGACCTTCAGTAAAGAGGGATGTGGGCAGTaGAGTTTGGGAAGACTGGGAACAGGCTCTGGCCAAGGAATGGAA | + |
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Preference number: 5 (lower is better) Translates to: QFLLVPTFSKEGCGQ*SLGRLGTGSGQGME Trigger: TTCCATTCCTTGGCCAGAGCCTGTTCCCAGTCTTCCCAAACTGCACTGCCCACATCCCTCTTTACTGAAGGTCGGTACCAGCAAGAACTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR CAA 90 bp | TTCTCCCTTTTCCTTCCTCCCCACAGAATGGTGCAATCGTGGGCATCAAATGGATGTGGGCAGTGCAGTTaGGGAAGACTGGGAACAGGC | + |
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Preference number: 5 (lower is better) Translates to: FSLFLPPHRMVQSWASNGCGQCS*GRLGTG Trigger: GCCTGTTCCCAGTCTTCCCAAACTGCACTGCCCACA...TCCATTTGATGCCCACGATTGCACCATTCTGTGGGGAGGAAGGAAAAGGGAGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS CCA 90 bp | TGTACTGACCTCTTGTGCCAAGGTCCTGACCAGAGGAGAAGTGGCTaGAATGGTGGTAGGATCAGAACTGCTGTGAGCATTGTTGGTTTC | + |
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Preference number: 5 (lower is better) Translates to: CTDLLCQGPDQRRSG*NGGRIRTAVSIVGF Trigger: GAAACCAACAATGCTCACAGCAGTTCTGATCCTACCACCATTCCAGCCACTTCTCCTCTGGTCAGGACCTTGGCACAAGAGGTCAGTACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR CAA 90 bp | TCCCTTTTCCTTCCTCCCCACAGAATGGTGCAATCGTGGGCATCAAATGGAGAGCTTGAAACTATGCCCTaGACCTGGCTAACTCCTCCT | + |
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Preference number: 5 (lower is better) Translates to: SLFLPPHRMVQSWASNGELETMP*TWLTPP Trigger: AGGAGGAGTTAGCCAGGTCAAGGGCATAGTTTCAAG...CTCTCCATTTGATGCCCACGATTGCACCATTCTGTGGGGAGGAAGGAAAAGGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS TCA 90 bp | ACCAGAGGAGAAGTGGCTGGAATGGTGGTAGGATCAGAACTGCTGTaGGCATTGTTGGTTTCTCCCCTACACAGCTCTAAGGCTGAAATG | + |
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Preference number: 5 (lower is better) Translates to: TRGEVAGMVVGSELL*ALLVSPLHSSKAEM Trigger: CATTTCAGCCTTAGAGCTGTGTAGGGGAGAAACCAACAATGCTCACAGCAGTTCTGATCCTACCACCATTCCAGCCACTTCTCCTCTGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS TCA 90 bp | GTTTGGGAAGACTGGGAACAGGCTCTGGCCAAGGAATGGAAGAGCTaGAGAAAGGCCAAGGAGTGTTGTGTAGTATCTTCTCTATGGGCT | + |
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Preference number: 5 (lower is better) Translates to: VWEDWEQALAKEWKS*RKAKECCVVSSLWA Trigger: AGCCCATAGAGAAGATACTACACAACACTCCTTGGCCTTTCTTCAGCTCTTCCATTCCTTGGCCAGAGCCTGTTCCCAGTCTTCCCAAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR CAA 90 bp | TCTCCCTTTTCCTTCCTCCCCACAGAATGGTGCAATCGTGGGCATCAAATGGAGCTCATTTGCCAGGCCTaGAATCAGAGGATCTTCCAA | + |
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Preference number: 5 (lower is better) Translates to: SPFSFLPTEWCNRGHQMELICQA*NQRIFQ Trigger: TTGGAAGATCCTCTGATTCAAGGCCTGGCAAATGAG...CTCCATTTGATGCCCACGATTGCACCATTCTGTGGGGAGGAAGGAAAAGGGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS CCA 90 bp | TGTGTAGTATCTTCTCTATGGGCTTGTCTTCTACCCCTAGTTTCTTaGGCTCCTCTAGCCCCACGTGGTTTAGCTGAGTCCCGAAACAAT | + |
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Preference number: 5 (lower is better) Translates to: CVVSSLWACLLPLVS*APLAPRGLAESRNN Trigger: ATTGTTTCGGGACTCAGCTAAACCACGTGGGGCTAGAGGAGCCCAAGAAACTAGGGGTAGAAGACAAGCCCATAGAGAAGATACTACACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR CAA 90 bp | AATGTAGAACAGGTTTGGGCAGTGAGAGAAGGGCTGTCCAAATATGCTCATAATGCCTCCAGCCTCTGCTaGTGTTCCTGGAGAACTTCC | + |
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Preference number: 5 (lower is better) Translates to: NVEQVWAVREGLSKYAHNASSLC*CSWRTS Trigger: GGAAGTTCTCCAGGAACACAAGCAGAGGCTGGAGGC...ATTATGAGCATATTTGGACAGCCCTTCTCTCACTGCCCAAACCTGTTCTACATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR CAA 90 bp | TTCTTTAATGTAGAACAGGTTTGGGCAGTGAGAGAAGGGCTGTCCAAATATGCTTCCTGTACTGACCTCTaGTGCCAAGGTCCTGACCAG | + |
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Preference number: 5 (lower is better) Translates to: FFNVEQVWAVREGLSKYASCTDL*CQGPDQ Trigger: CTGGTCAGGACCTTGGCACAAGAGGTCAGTACAGGA...AGCATATTTGGACAGCCCTTCTCTCACTGCCCAAACCTGTTCTACATTAAAGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR CAA 90 bp | CTCATAATTCGAGGAAGAGGAATTTCTAAAATAAGTGCCTTCCATCCCCTTCTCGTAGGGGACTGCCAGTaGCCAACTGATGTGCCAGAG | + |
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Preference number: 5 (lower is better) Translates to: LIIRGRGISKISAFHPLLVGDCQ*PTDVPE Trigger: CTCTGGCACATCAGTTGGCAACTGGCAGTCCCCTAC...GAGAAGGGGATGGAAGGCACTTATTTTAGAAATTCCTCTTCCTCGAATTATGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR CAA 90 bp | AATATGCTCATAATTCGAGGAAGAGGAATTTCTAAAATAAGTGCCTTCCATCCCTGCAGCGCTCGAGGGTaGGTGAGGATGGGGAGAAGT | + |
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Preference number: 5 (lower is better) Translates to: NMLIIRGRGISKISAFHPCSARG*VRMGRS Trigger: ACTTCTCCCCATCCTCACCAACCCTCGAGCGCTGCA...GGGATGGAAGGCACTTATTTTAGAAATTCCTCTTCCTCGAATTATGAGCATATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR CAA 90 bp | TTTAATGTAGAACAGGTTTGGGCAGTGAGAGAAGGGCTGTCCAAATATGCTCATCAGTTCCTCCAGTTCTaGCTGGTACCGACCTTCAGT | + |
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Preference number: 5 (lower is better) Translates to: FNVEQVWAVREGLSKYAHQFLQF*LVPTFS Trigger: ACTGAAGGTCGGTACCAGCAAGAACTGGAGGAACTG...ATGAGCATATTTGGACAGCCCTTCTCTCACTGCCCAAACCTGTTCTACATTAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR CAA 90 bp | AATGTAGAACAGGTTTGGGCAGTGAGAGAAGGGCTGTCCAAATATGCTCATAATTGGCATGTTTCTCATTaGCCAGGCCTTGAATCAGAG | + |
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Preference number: 5 (lower is better) Translates to: NVEQVWAVREGLSKYAHNWHVSH*PGLESE Trigger: CTCTGATTCAAGGCCTGGCAAATGAGAAACATGCCA...ATTATGAGCATATTTGGACAGCCCTTCTCTCACTGCCCAAACCTGTTCTACATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR CAA 90 bp | TTTAATGTAGAACAGGTTTGGGCAGTGAGAGAAGGGCTGTCCAAATATGCTCATATCTTCTCTATGGGCTaGTCTTCTACCCCTAGTTTC | + |
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Preference number: 5 (lower is better) Translates to: FNVEQVWAVREGLSKYAHIFSMG*SSTPSF Trigger: GAAACTAGGGGTAGAAGACAAGCCCATAGAGAAGAT...ATGAGCATATTTGGACAGCCCTTCTCTCACTGCCCAAACCTGTTCTACATTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS-3UTR CAA 90 bp | CCAAATATGCTCATAATTCGAGGAAGAGGAATTTCTAAAATAAGTGCCTTCCATAAGGTATTTGGAGATTaGCTTCTTAAAGCGGCGGAC | + |
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Preference number: 5 (lower is better) Translates to: PNMLIIRGRGISKISAFHKVFGD*LLKAAD Trigger: GTCCGCCGCTTTAAGAAGCAAATCTCCAAATACCTT...ATGGAAGGCACTTATTTTAGAAATTCCTCTTCCTCGAATTATGAGCATATTTGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS CCA 72 bp | CTAGGTCAGGTGAGGTCCCGGCCAGCCGGCCAAGCTTaGCTGATGGTTCTGAGCGGTGGGTATACTGGCCTG | + |
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Preference number: 6 (lower is better) Translates to: LGQVRSRPAGQA*LMVLSGGYTGL Trigger: CAGGCCAGTATACCCACCGCTCAGAACCATCAGCCAAGCTTGGCCGGCTGGCCGGGACCTCACCTGACCTAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS CCA 72 bp | ATCAGAGCAGCTGGGATGCATAGCGTTGTCACCCCCTaGCACGGCTTTCAGGGCCTCCAGCCTCTGCTTGTG | + |
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Preference number: 6 (lower is better) Translates to: IRAAGMHSVVTP*HGFQGLQPLLV Trigger: CACAAGCAGAGGCTGGAGGCCCTGAAAGCCGTGCCAGGGGGTGACAACGCTATGCATCCCAGCTGCTCTGAT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS CAA 90 bp | CAGGGCCTCCAGCCTCTGCTTGTGTTCCTGGAGAACTTCCTGCGATaGCGCGGGCTTCTGAAGGGTTTCCGGAAATTTGAGAGCTGGGTC | + |
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Preference number: 6 (lower is better) Translates to: QGLQPLLVFLENFLR*RGLLKGFRKFESWV Trigger: GACCCAGCTCTCAAATTTCCGGAAACCCTTCAGAAGCCCGCGCAATCGCAGGAAGTTCTCCAGGAACACAAGCAGAGGCTGGAGGCCCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS TCA 72 bp | GTCCTGTGGGGTCTTGACAGACACTCTGATGATACGTaGGGATGGCTCCCTACCAGACACCAGCTGGCTGTC | + |
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Preference number: 6 (lower is better) Translates to: VLWGLDRHSDDT*GWLPTRHQLAV Trigger: GACAGCCAGCTGGTGTCTGGTAGGGAGCCATCCTCACGTATCATCAGAGTGTCTGTCAAGACCCCACAGGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS TCA 72 bp | AGTTTCTTGGGCTCCTCTAGCCCCACGTGGTTTAGCTaGGTCCCGAAACAATGGTCCCAGCTCAGGCACCTC | + |
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Preference number: 6 (lower is better) Translates to: SFLGSSSPTWFS*VPKQWSQLRHL Trigger: GAGGTGCCTGAGCTGGGACCATTGTTTCGGGACTCAGCTAAACCACGTGGGGCTAGAGGAGCCCAAGAAACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS GCA 72 bp | CAGAGGATCTTCCAAGAGTTGCACCACAGACTCTGGTaGCGCAGGCAGCAGTTGGACACGCTGGCTGAAGAA | + |
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Preference number: 6 (lower is better) Translates to: QRIFQELHHRLW*RRQQLDTLAEE Trigger: TTCTTCAGCCAGCGTGTCCAACTGCTGCCTGCGGCACCAGAGTCTGTGGTGCAACTCTTGGAAGATCCTCTG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS CCA 72 bp | AGTTGCACCACAGACTCTGGTGCCGCAGGCAGCAGTTaGACACGCTGGCTGAAGAAATCAGCTAGGTCAGGT | + |
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Preference number: 6 (lower is better) Translates to: SCTTDSGAAGSS*TRWLKKSARSG Trigger: ACCTGACCTAGCTGATTTCTTCAGCCAGCGTGTCCAACTGCTGCCTGCGGCACCAGAGTCTGTGGTGCAACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS TCA 72 bp | CTGGCCTGTGGGGCCTACCAGAGTTCCTGTACAGGCTaGCCCTTTCAAATGAGACCTCACTACCACATGGAC | + |
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Preference number: 6 (lower is better) Translates to: LACGAYQSSCTG*PFQMRPHYHMD Trigger: GTCCATGTGGTAGTGAGGTCTCATTTGAAAGGGTCAGCCTGTACAGGAACTCTGGTAGGCCCCACAGGCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS CCA 72 bp | CGACCTTCAGTAAAGAGGGATGTGGGCAGTGCAGTTTaGGAAGACTGGGAACAGGCTCTGGCCAAGGAATGG | + |
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Preference number: 6 (lower is better) Translates to: RPSVKRDVGSAV*EDWEQALAKEW Trigger: CCATTCCTTGGCCAGAGCCTGTTCCCAGTCTTCCCAAACTGCACTGCCCACATCCCTCTTTACTGAAGGTCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS TCA 72 bp | GAGCCATCAAGAATGCCACGCTGGCTCAGTATGTCTTaGTCCCGGAGGATCTTCCCAGTGAAGATGAGCACC | + |
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Preference number: 6 (lower is better) Translates to: EPSRMPRWLSMS*SRRIFPVKMST Trigger: GGTGCTCATCTTCACTGGGAAGATCCTCCGGGATCAAGACATACTGAGCCAGCGTGGCATTCTTGATGGCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS TCA 72 bp | GCGATTGCGCGGGCTTCTGAAGGGTTTCCGGAAATTTaGGAGCTGGGTCCCGTTTCTGTACCGTTTTTGAGG | + |
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Preference number: 6 (lower is better) Translates to: AIARASEGFPEI*ELGPVSVPFLR Trigger: CCTCAAAAACGGTACAGAAACGGGACCCAGCTCTCAAATTTCCGGAAACCCTTCAGAAGCCCGCGCAATCGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS GCA 72 bp | CTTGACCTGGCTAACTCCTCCTGTACTGACCTCTTGTaGCAAGGTCCTGACCAGAGGAGAAGTGGCTGGAAT | + |
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Preference number: 6 (lower is better) Translates to: LDLANSSCTDLL*QGPDQRRSGWN Trigger: ATTCCAGCCACTTCTCCTCTGGTCAGGACCTTGGCACAAGAGGTCAGTACAGGAGGAGTTAGCCAGGTCAAG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS CAA 72 bp | ATTTGCCAGGCCTTGAATCAGAGGATCTTCCAAGAGTaGCACCACAGACTCTGGTGCCGCAGGCAGCAGTTG | + |
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Preference number: 6 (lower is better) Translates to: ICQALNQRIFQE*HHRLWCRRQQL Trigger: CAACTGCTGCCTGCGGCACCAGAGTCTGTGGTGCAACTCTTGGAAGATCCTCTGATTCAAGGCCTGGCAAAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS TCA 72 bp | GAAGCCACCAATAAGGCCAGAGTGGAGAGCATGACCTaGTGGATATCAGAGCAGCTGGGATGCATAGCGTTG | + |
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Preference number: 6 (lower is better) Translates to: EATNKARVESMT*WISEQLGCIAL Trigger: CAACGCTATGCATCCCAGCTGCTCTGATATCCATCAGGTCATGCTCTCCACTCTGGCCTTATTGGTGGCTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS GCA 72 bp | GGATGGGGAGAAGTGGCAAGTGATGTAGTAGGGGACTaGCAGTTGCCAACTGATGTGCCAGAGATGGATTCT | + |
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Preference number: 6 (lower is better) Translates to: GWGEVASDVVGD*QLPTDVPEMDS Trigger: AGAATCCATCTCTGGCACATCAGTTGGCAACTGGCAGTCCCCTACTACATCACTTGCCACTTCTCCCCATCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS CCA 72 bp | CTCTTGTGCCAAGGTCCTGACCAGAGGAGAAGTGGCTaGAATGGTGGTAGGATCAGAACTGCTGTGAGCATT | + |
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Preference number: 6 (lower is better) Translates to: LLCQGPDQRRSG*NGGRIRTAVSI Trigger: AATGCTCACAGCAGTTCTGATCCTACCACCATTCCAGCCACTTCTCCTCTGGTCAGGACCTTGGCACAAGAG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS CCA 72 bp | TCTTCTCTATGGGCTTGTCTTCTACCCCTAGTTTCTTaGGCTCCTCTAGCCCCACGTGGTTTAGCTGAGTCC | + |
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Preference number: 6 (lower is better) Translates to: SSLWACLLPLVS*APLAPRGLAES Trigger: GGACTCAGCTAAACCACGTGGGGCTAGAGGAGCCCAAGAAACTAGGGGTAGAAGACAAGCCCATAGAGAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS CAA 72 bp | GGAGAAGTGGCAAGTGATGTAGTAGGGGACTGCCAGTaGCCAACTGATGTGCCAGAGATGGATTCTGCTGCA | + |
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Preference number: 6 (lower is better) Translates to: GEVASDVVGDCQ*PTDVPEMDSAA Trigger: TGCAGCAGAATCCATCTCTGGCACATCAGTTGGCAACTGGCAGTCCCCTACTACATCACTTGCCACTTCTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS CAA 90 bp | ATGGACTGTAGAGCCATCAAGAATGCCACGCTGGCTCAGTATGTCTaGATCCCGGAGGATCTTCCCAGTGAAGATGAGCACCAATCGGTC | + |
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Preference number: 6 (lower is better) Translates to: MDCRAIKNATLAQYV*IPEDLPSEDEHQSV Trigger: GACCGATTGGTGCTCATCTTCACTGGGAAGATCCTCCGGGATCAAGACATACTGAGCCAGCGTGGCATTCTTGATGGCTCTACAGTCCAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS CAA 90 bp | CTGAAGAAAGGCCAAGGAGTGTTGTGTAGTATCTTCTCTATGGGCTaGTCTTCTACCCCTAGTTTCTTGGGCTCCTCTAGCCCCACGTGG | + |
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Preference number: 6 (lower is better) Translates to: LKKGQGVLCSIFSMG*SSTPSFLGSSSPTW Trigger: CCACGTGGGGCTAGAGGAGCCCAAGAAACTAGGGGTAGAAGACAAGCCCATAGAGAAGATACTACACAACACTCCTTGGCCTTTCTTCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS TCA 72 bp | AAGTCTAGCATACCAGGTCGGCACCCTAAACTGGCCTaGCTTGAAACTATGCCCTTGACCTGGCTAACTCCT | + |
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Preference number: 6 (lower is better) Translates to: KSSIPGRHPKLA*LETMPLTWLTP Trigger: AGGAGTTAGCCAGGTCAAGGGCATAGTTTCAAGTCAGGCCAGTTTAGGGTGCCGACCTGGTATGCTAGACTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS CAA 90 bp | TTCCGGAATGTGAACGCCATTGGCATGTTTCTCATTTGCCAGGCCTaGAATCAGAGGATCTTCCAAGAGTTGCACCACAGACTCTGGTGC | + |
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Preference number: 6 (lower is better) Translates to: FRNVNAIGMFLICQA*NQRIFQELHHRLWC Trigger: GCACCAGAGTCTGTGGTGCAACTCTTGGAAGATCCTCTGATTCAAGGCCTGGCAAATGAGAAACATGCCAATGGCGTTCACATTCCGGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS TCA 72 bp | GACTGGGAACAGGCTCTGGCCAAGGAATGGAAGAGCTaGAGAAAGGCCAAGGAGTGTTGTGTAGTATCTTCT | + |
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Preference number: 6 (lower is better) Translates to: DWEQALAKEWKS*RKAKECCVVSS Trigger: AGAAGATACTACACAACACTCCTTGGCCTTTCTTCAGCTCTTCCATTCCTTGGCCAGAGCCTGTTCCCAGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS CCA 72 bp | TTGGTTTCTCCCCTACACAGCTCTAAGGCTGAAATGTaGCCTTTAGAAGCCACCAATAAGGCCAGAGTGGAG | + |
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Preference number: 6 (lower is better) Translates to: LVSPLHSSKAEM*PLEATNKARVE Trigger: CTCCACTCTGGCCTTATTGGTGGCTTCTAAAGGCCACATTTCAGCCTTAGAGCTGTGTAGGGGAGAAACCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS CAA 90 bp | GGCTCTGGCCAAGGAATGGAAGAGCTGAAGAAAGGCCAAGGAGTGTaGTGTAGTATCTTCTCTATGGGCTTGTCTTCTACCCCTAGTTTC | + |
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Preference number: 6 (lower is better) Translates to: GSGQGMEELKKGQGV*CSIFSMGLSSTPSF Trigger: GAAACTAGGGGTAGAAGACAAGCCCATAGAGAAGATACTACACAACACTCCTTGGCCTTTCTTCAGCTCTTCCATTCCTTGGCCAGAGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS CAA 72 bp | GTGAACGCCATTGGCATGTTTCTCATTTGCCAGGCCTaGAATCAGAGGATCTTCCAAGAGTTGCACCACAGA | + |
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Preference number: 6 (lower is better) Translates to: VNAIGMFLICQA*NQRIFQELHHR Trigger: TCTGTGGTGCAACTCTTGGAAGATCCTCTGATTCAAGGCCTGGCAAATGAGAAACATGCCAATGGCGTTCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS GCA 72 bp | TTCCGGAATGTGAACGCCATTGGCATGTTTCTCATTTaGCAGGCCTTGAATCAGAGGATCTTCCAAGAGTTG | + |
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Preference number: 6 (lower is better) Translates to: FRNVNAIGMFLI*QALNQRIFQEL Trigger: CAACTCTTGGAAGATCCTCTGATTCAAGGCCTGGCAAATGAGAAACATGCCAATGGCGTTCACATTCCGGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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| CDS CAA 72 bp | CAAGGAATGGAAGAGCTGAAGAAAGGCCAAGGAGTGTaGTGTAGTATCTTCTCTATGGGCTTGTCTTCTACC | + |
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Preference number: 6 (lower is better) Translates to: QGMEELKKGQGV*CSIFSMGLSST Trigger: GGTAGAAGACAAGCCCATAGAGAAGATACTACACAACACTCCTTGGCCTTTCTTCAGCTCTTCCATTCCTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053743.6 |
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