RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for UBL4B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000055891

Ensembl transcript IDs: ENSMUST00000052853.8

Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAAGCAGGGCAGCAGGGCCAGCTTCACCACGAGTTCAAGGGCAGCTaGCAGCGCTTCCTCCTCTCTATACTACAGGGGATCTGGGTTCTA +
Preference number: 1 (lower is better)
Translates to: QAGQQGQLHHEFKGS*QRFLLSILQGIWVL
Trigger: TAGAACCCAGATCCCCTGTAGTATAGAGAGGAGGAAGCGCTGCCAGCTGCCCTTGAACTCGTGGTGAAGCTGGCCCTGCTGCCCTGCTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
3UTR GCA 90 bp GGAGAAGTGGCTCTGTCTCAAGCCATGGAGACTTTCTCTGAGGCATaGTTTGGCAAAGCTGCTCCACTCAGAGCCAGGGTGAACTCTGAC +
Preference number: 1 (lower is better)
Translates to: GEVALSQAMETFSEA*FGKAAPLRARVNSD
Trigger: GTCAGAGTTCACCCTGGCTCTGAGTGGAGCAGCTTTGCCAAAGCATGCCTCAGAGAAAGTCTCCATGGCTTGAGACAGAGCCACTTCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
3UTR CCA 90 bp AAGAGGAGGGACAATGGGCTCACACTGTCTGTTCTGAAGGAGAAGTaGCTCTGTCTCAAGCCATGGAGACTTTCTCTGAGGCATGCTTTG +
Preference number: 1 (lower is better)
Translates to: KRRDNGLTLSVLKEK*LCLKPWRLSLRHAL
Trigger: CAAAGCATGCCTCAGAGAAAGTCTCCATGGCTTGAGACAGAGCCACTTCTCCTTCAGAACAGACAGTGTGAGCCCATTGTCCCTCCTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
3UTR-3UTR TCA 90 bp AGCAGGGCAGCAGGGCCAGCTTCACCACGAGTTCAAGGGCAGCTGGCAGCGCTTTCACACTGTCTGTTCTaGAGGAGAAGTGGCTCTGTC +
Preference number: 2 (lower is better)
Translates to: SRAAGPASPRVQGQLAALSHCLF*RRSGSV
Trigger: GACAGAGCCACTTCTCCTTCAGAACAGACAGTGTGA...AAGCGCTGCCAGCTGCCCTTGAACTCGTGGTGAAGCTGGCCCTGCTGCCCTGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
3UTR-3UTR CCA 90 bp TACTCTGGGACTTCATCTGAGTTTCCACAAGCCCCAGGACTGGCCCATGCAATCGAGTTCAAGGGCAGCTaGCAGCGCTTCCTCCTCTCT +
Preference number: 2 (lower is better)
Translates to: YSGTSSEFPQAPGLAHAIEFKGS*QRFLLS
Trigger: AGAGAGGAGGAAGCGCTGCCAGCTGCCCTTGAACTC...GATTGCATGGGCCAGTCCTGGGGCTTGTGGAAACTCAGATGAAGTCCCAGAGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
3UTR-3UTR TCA 90 bp GGACTGGCCCATGCAATCGCTTTCCCTAGCTCCTGTCTCTGTGGTCCCATCTCTCATGGAGACTTTCTCTaGGGCATGCTTTGGCAAAGC +
Preference number: 2 (lower is better)
Translates to: GLAHAIAFPSSCLCGPISHGDFL*GMLWQS
Trigger: GCTTTGCCAAAGCATGCCTCAGAGAAAGTCTCCATG...AGAGATGGGACCACAGAGACAGGAGCTAGGGAAAGCGATTGCATGGGCCAGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
3UTR-3UTR GCA 90 bp TTCCACAAGCCCCAGGACTGGCCCATGCAATCGCTTTCCCTAGCTCCTGTCTCTGTGCTAGAATCATTCTaGACTTCAGAAGGGGGCCTA +
Preference number: 2 (lower is better)
Translates to: FHKPQDWPMQSLSLAPVSVLESF*TSEGGL
Trigger: TAGGCCCCCTTCTGAAGTGCAGAATGATTCTAGCAC...AGAGACAGGAGCTAGGGAAAGCGATTGCATGGGCCAGTCCTGGGGCTTGTGGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
3UTR-3UTR CCA 90 bp CTGAGTTTCCACAAGCCCCAGGACTGGCCCATGCAATCGCTTTCCCTAGCTCCTATACTACAGGGGATCTaGGTTCTAAGAGGAGGGACA +
Preference number: 2 (lower is better)
Translates to: LSFHKPQDWPMQSLSLAPILQGI*VLRGGT
Trigger: TGTCCCTCCTCTTAGAACCCAGATCCCCTGTAGTAT...AGGAGCTAGGGAAAGCGATTGCATGGGCCAGTCCTGGGGCTTGTGGAAACTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
3UTR-3UTR GCA 90 bp CAAGCCATGGAGACTTTCTCTGAGGCATGCTTTGGCAAAGCTGCTCCACTCAGAAGCAAGAAGGACAAATaGAACTCCATCAGGAGAAAG +
Preference number: 2 (lower is better)
Translates to: QAMETFSEACFGKAAPLRSKKDK*NSIRRK
Trigger: CTTTCTCCTGATGGAGTTGCATTTGTCCTTCTTGCT...TCTGAGTGGAGCAGCTTTGCCAAAGCATGCCTCAGAGAAAGTCTCCATGGCTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
3UTR GCA 72 bp GCTCTGTCTCAAGCCATGGAGACTTTCTCTGAGGCATaGTTTGGCAAAGCTGCTCCACTCAGAGCCAGGGTG +
Preference number: 3 (lower is better)
Translates to: ALSQAMETFSEA*FGKAAPLRARV
Trigger: CACCCTGGCTCTGAGTGGAGCAGCTTTGCCAAAGCATGCCTCAGAGAAAGTCTCCATGGCTTGAGACAGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
3UTR TCA 72 bp CATGCTTTGGCAAAGCTGCTCCACTCAGAGCCAGGGTaGACTCTGACTGTCCCTATAGCATACCATGGGCCA +
Preference number: 3 (lower is better)
Translates to: HALAKLLHSEPG*TLTVPIAYHGP
Trigger: TGGCCCATGGTATGCTATAGGGACAGTCAGAGTTCACCCTGGCTCTGAGTGGAGCAGCTTTGCCAAAGCATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
3UTR CCA 72 bp TGGCAGCGCTTCCTCCTCTCTATACTACAGGGGATCTaGGTTCTAAGAGGAGGGACAATGGGCTCACACTGT +
Preference number: 3 (lower is better)
Translates to: WQRFLLSILQGI*VLRGGTMGSHC
Trigger: ACAGTGTGAGCCCATTGTCCCTCCTCTTAGAACCCAGATCCCCTGTAGTATAGAGAGGAGGAAGCGCTGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
3UTR TCA 72 bp AGAAGTGGCTCTGTCTCAAGCCATGGAGACTTTCTCTaGGGCATGCTTTGGCAAAGCTGCTCCACTCAGAGC +
Preference number: 3 (lower is better)
Translates to: RSGSVSSHGDFL*GMLWQSCSTQS
Trigger: GCTCTGAGTGGAGCAGCTTTGCCAAAGCATGCCTCAGAGAAAGTCTCCATGGCTTGAGACAGAGCCACTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
CDS-3UTR GCA 90 bp GATACGAAACCACAAGCAGGGCAGCAGGGCCAGCTTCACCACGAGTTCAAGGGCCCTCGGAACAGCAGGTaGTGCTGCTCCTCGGGCACC +
Preference number: 4 (lower is better)
Translates to: DTKPQAGQQGQLHHEFKGPRNSR*CCSSGT
Trigger: GGTGCCCGAGGAGCAGCAGCACCTGCTGTTCCGAGG...GCCCTTGAACTCGTGGTGAAGCTGGCCCTGCTGCCCTGCTTGTGGTTTCGTATC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
CDS-3UTR GCA 90 bp AAGGGCAGCTGGCAGCGCTTCCTCCTCTCTATACTACAGGGGATCTGGGTTCTAAGCTGGCCCACCAACTaGTCCAGGGCCTCCAGGCTC +
Preference number: 4 (lower is better)
Translates to: KGSWQRFLLSILQGIWVLSWPTN*SRASRL
Trigger: GAGCCTGGAGGCCCTGGAGCAGTTGGTGGGCCAGCT...TAGAACCCAGATCCCCTGTAGTATAGAGAGGAGGAAGCGCTGCCAGCTGCCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
CDS-3UTR GCA 90 bp GGACTGGCCCATGCAATCGCTTTCCCTAGCTCCTGTCTCTGTGGTCCCATCTCTAACAGCAGGTGCTGCTaGTCCTCGGGCACCTGTAGG +
Preference number: 4 (lower is better)
Translates to: GLAHAIAFPSSCLCGPISNSRCC*SSGTCR
Trigger: CCTACAGGTGCCCGAGGAGCAGCAGCACCTGCTGTT...AGAGATGGGACCACAGAGACAGGAGCTAGGGAAAGCGATTGCATGGGCCAGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
CDS-3UTR CCA 90 bp TCTCTGAAGATACGAAACCACAAGCAGGGCAGCAGGGCCAGCTTCACCACGAGTAGAACCTGGCCCAGCTaGAGCCACAGGGGCTGGGTT +
Preference number: 4 (lower is better)
Translates to: SLKIRNHKQGSRASFTTSRTWPS*SHRGWV
Trigger: AACCCAGCCCCTGTGGCTCCAGCTGGGCCAGGTTCT...ACTCGTGGTGAAGCTGGCCCTGCTGCCCTGCTTGTGGTTTCGTATCTTCAGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
CDS-3UTR GCA 90 bp CTGTCTCAAGCCATGGAGACTTTCTCTGAGGCATGCTTTGGCAAAGCTGCTCCACGGAACAGCAGGTGCTaGTGCTCCTCGGGCACCTGT +
Preference number: 4 (lower is better)
Translates to: LSQAMETFSEACFGKAAPRNSRC*CSSGTC
Trigger: ACAGGTGCCCGAGGAGCAGCAGCACCTGCTGTTCCG...TGGAGCAGCTTTGCCAAAGCATGCCTCAGAGAAAGTCTCCATGGCTTGAGACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
CDS-3UTR GCA 90 bp AAGGGCAGCTGGCAGCGCTTCCTCCTCTCTATACTACAGGGGATCTGGGTTCTAGGCTTCCTTTTCCTCTaGCAGCTCGTCAAGCTGCTG +
Preference number: 4 (lower is better)
Translates to: KGSWQRFLLSILQGIWVLGFLFL*QLVKLL
Trigger: CAGCAGCTTGACGAGCTGGCAGAGGAAAAGGAAGCC...TAGAACCCAGATCCCCTGTAGTATAGAGAGGAGGAAGCGCTGCCAGCTGCCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
CDS-3UTR CCA 90 bp TCTCTGAAGATACGAAACCACAAGCAGGGCAGCAGGGCCAGCTTCACCACGAGTTGTTTGTCTAGAACCTaGCCCAGCTGGAGCCACAGG +
Preference number: 4 (lower is better)
Translates to: SLKIRNHKQGSRASFTTSCLSRT*PSWSHR
Trigger: CCTGTGGCTCCAGCTGGGCCAGGTTCTAGACAAACA...ACTCGTGGTGAAGCTGGCCCTGCTGCCCTGCTTGTGGTTTCGTATCTTCAGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
CDS-3UTR GCA 90 bp AAGCCATGGAGACTTTCTCTGAGGCATGCTTTGGCAAAGCTGCTCCACTCAGAGTCCAGGCTCAGCCTCTaGAGACGCTCCTCATGCTCT +
Preference number: 4 (lower is better)
Translates to: KPWRLSLRHALAKLLHSESRLSL*RRSSCS
Trigger: AGAGCATGAGGAGCGTCTGCAGAGGCTGAGCCTGGA...CTCTGAGTGGAGCAGCTTTGCCAAAGCATGCCTCAGAGAAAGTCTCCATGGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
CDS-3UTR GCA 90 bp GGACTGGCCCATGCAATCGCTTTCCCTAGCTCCTGTCTCTGTGGTCCCATCTCTCCCCAGCACTGTCTTTaGATCCTTTGCTCCAAAATG +
Preference number: 4 (lower is better)
Translates to: GLAHAIAFPSSCLCGPISPQHCL*ILCSKM
Trigger: CATTTTGGAGCAAAGGATGCAAAGACAGTGCTGGGG...AGAGATGGGACCACAGAGACAGGAGCTAGGGAAAGCGATTGCATGGGCCAGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
CDS-3UTR CCA 90 bp GGGCCAGCTTCACCACGAGTTCAAGGGCAGCTGGCAGCGCTTCCTCCTCTCTATCCAGTTTCTTCAATGTaGCCACACTTTCTTTTCCAG +
Preference number: 4 (lower is better)
Translates to: GPASPRVQGQLAALPPLYPVSSM*PHFLFQ
Trigger: CTGGAAAAGAAAGTGTGGCCACATTGAAGAAACTGG...ATAGAGAGGAGGAAGCGCTGCCAGCTGCCCTTGAACTCGTGGTGAAGCTGGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
CDS-3UTR TCA 90 bp TCTCAAGCCATGGAGACTTTCTCTGAGGCATGCTTTGGCAAAGCTGCTCCACTCCCCAATGCTGTAATCTaGGAGGTATTTGTCATCAGC +
Preference number: 4 (lower is better)
Translates to: SQAMETFSEACFGKAAPLPNAVI*EVFVIS
Trigger: GCTGATGACAAATACCTCTCAGATTACAGCATTGGG...GAGTGGAGCAGCTTTGCCAAAGCATGCCTCAGAGAAAGTCTCCATGGCTTGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
CDS GCA 90 bp GATGCAACAGCAGGGGCTTCCTTTTCCTCTGCCAGCTCGTCAAGCTaGTGTTGTGCTAGGAGCTGGCCCACCAACTGCTCCAGGGCCTCC +
Preference number: 5 (lower is better)
Translates to: DATAGASFSSASSSS*CCARSWPTNCSRAS
Trigger: GGAGGCCCTGGAGCAGTTGGTGGGCCAGCTCCTAGCACAACAGCAGCTTGACGAGCTGGCAGAGGAAAAGGAAGCCCCTGCTGTTGCATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
CDS GCA 90 bp CAGCTGGAGCCACAGGGGCTGGGTTTGATGGGTCTTATCCAGCGCTaGATCCTCTGGAGGCCGCATGATGACATTGATGGAAGCGTTGGG +
Preference number: 5 (lower is better)
Translates to: QLEPQGLGLMGLIQR*ILWRPHDDIDGSVG
Trigger: CCCAACGCTTCCATCAATGTCATCATGCGGCCTCCAGAGGATGCAGCGCTGGATAAGACCCATCAAACCCAGCCCCTGTGGCTCCAGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
CDS CCA 90 bp CCACAGGGGCTGGGTTTGATGGGTCTTATCCAGCGCTGCATCCTCTaGAGGCCGCATGATGACATTGATGGAAGCGTTGGGCCCAATGCT +
Preference number: 5 (lower is better)
Translates to: PQGLGLMGLIQRCIL*RPHDDIDGSVGPNA
Trigger: AGCATTGGGCCCAACGCTTCCATCAATGTCATCATGCGGCCTCCAGAGGATGCAGCGCTGGATAAGACCCATCAAACCCAGCCCCTGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
CDS-3UTR CAA 90 bp TTCCACAAGCCCCAGGACTGGCCCATGCAATCGCTTTCCCTAGCTCCTGTCTCTCCTCCTCCTCCTCCATaGTTTTGCTCGAGTTCCGAT +
Preference number: 5 (lower is better)
Translates to: FHKPQDWPMQSLSLAPVSPPPPP*FCSSSD
Trigger: ATCGGAACTCGAGCAAAACAATGGAGGAGGAGGAGG...AGAGACAGGAGCTAGGGAAAGCGATTGCATGGGCCAGTCCTGGGGCTTGTGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
CDS TCA 90 bp CCTCGGAACAGCAGGTGCTGCTGCTCCTCGGGCACCTGTAGGTGCTaGGAAACCAGTTTCTTCAATGTGGCCACACTTTCTTTTCCAGAT +
Preference number: 5 (lower is better)
Translates to: PRNSRCCCSSGTCRC*ETSFFNVATLSFPD
Trigger: ATCTGGAAAAGAAAGTGTGGCCACATTGAAGAAACTGGTTTCTCAGCACCTACAGGTGCCCGAGGAGCAGCAGCACCTGCTGTTCCGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
CDS-3UTR CAA 90 bp AAGCCATGGAGACTTTCTCTGAGGCATGCTTTGGCAAAGCTGCTCCACTCAGAGACGCTCCTCATGCTCTaGCCTCAAAAACCCCAGCAC +
Preference number: 5 (lower is better)
Translates to: KPWRLSLRHALAKLLHSETLLML*PQKPQH
Trigger: GTGCTGGGGTTTTTGAGGCAAGAGCATGAGGAGCGT...CTCTGAGTGGAGCAGCTTTGCCAAAGCATGCCTCAGAGAAAGTCTCCATGGCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
CDS CCA 90 bp GCTCCTCGGGCACCTGTAGGTGCTGAGAAACCAGTTTCTTCAATGTaGCCACACTTTCTTTTCCAGATACCTTCAGGCTGCATCTTCGGC +
Preference number: 5 (lower is better)
Translates to: APRAPVGAEKPVSSM*PHFLFQIPSGCIFG
Trigger: GCCGAAGATGCAGCCTGAAGGTATCTGGAAAAGAAAGTGTGGCCACATTGAAGAAACTGGTTTCTCAGCACCTACAGGTGCCCGAGGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
CDS-3UTR CAA 90 bp TCTCAAGCCATGGAGACTTTCTCTGAGGCATGCTTTGGCAAAGCTGCTCCACTCTCCTCCTCCATTGTTTaGCTCGAGTTCCGATGCAAC +
Preference number: 5 (lower is better)
Translates to: SQAMETFSEACFGKAAPLSSSIV*LEFRCN
Trigger: GTTGCATCGGAACTCGAGCAAAACAATGGAGGAGGA...GAGTGGAGCAGCTTTGCCAAAGCATGCCTCAGAGAAAGTCTCCATGGCTTGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
CDS-3UTR CAA 90 bp AGAGAAAAATTGCCCGAGAACATAGAAGAGTCAGTCCAGGGGAAGTTTAGTGAGGGCCGCATGATGACATaGATGGAAGCGTTGGGCCCA +
Preference number: 5 (lower is better)
Translates to: REKLPENIEESVQGKFSEGRMMT*MEALGP
Trigger: TGGGCCCAACGCTTCCATCAATGTCATCATGCGGCC...CTCACTAAACTTCCCCTGGACTGACTCTTCTATGTTCTCGGGCAATTTTTCTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
CDS-3UTR CAA 90 bp AGAGAAAAATTGCCCGAGAACATAGAAGAGTCAGTCCAGGGGAAGTTTAGTGAGTTTGCTCCAAAATGTTaGTCTAGAACCTGGCCCAGC +
Preference number: 5 (lower is better)
Translates to: REKLPENIEESVQGKFSEFAPKC*SRTWPS
Trigger: GCTGGGCCAGGTTCTAGACAAACATTTTGGAGCAAA...CTCACTAAACTTCCCCTGGACTGACTCTTCTATGTTCTCGGGCAATTTTTCTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
CDS GCA 72 bp GCAGGGGCTTCCTTTTCCTCTGCCAGCTCGTCAAGCTaGTGTTGTGCTAGGAGCTGGCCCACCAACTGCTCC +
Preference number: 6 (lower is better)
Translates to: AGASFSSASSSS*CCARSWPTNCS
Trigger: GGAGCAGTTGGTGGGCCAGCTCCTAGCACAACAGCAGCTTGACGAGCTGGCAGAGGAAAAGGAAGCCCCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
CDS GCA 72 bp AGGGCCTCCAGGCTCAGCCTCTGCAGACGCTCCTCATaGTCTTGCCTCAAAAACCCCAGCACTGTCTTTGCA +
Preference number: 6 (lower is better)
Translates to: RASRLSLCRRSS*SCLKNPSTVFA
Trigger: TGCAAAGACAGTGCTGGGGTTTTTGAGGCAAGAGCATGAGGAGCGTCTGCAGAGGCTGAGCCTGGAGGCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
CDS GCA 72 bp CCACAGGGGCTGGGTTTGATGGGTCTTATCCAGCGCTaGATCCTCTGGAGGCCGCATGATGACATTGATGGA +
Preference number: 6 (lower is better)
Translates to: PQGLGLMGLIQR*ILWRPHDDIDG
Trigger: TCCATCAATGTCATCATGCGGCCTCCAGAGGATGCAGCGCTGGATAAGACCCATCAAACCCAGCCCCTGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
CDS CCA 72 bp CTGGGTTTGATGGGTCTTATCCAGCGCTGCATCCTCTaGAGGCCGCATGATGACATTGATGGAAGCGTTGGG +
Preference number: 6 (lower is better)
Translates to: LGLMGLIQRCIL*RPHDDIDGSVG
Trigger: CCCAACGCTTCCATCAATGTCATCATGCGGCCTCCAGAGGATGCAGCGCTGGATAAGACCCATCAAACCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8
CDS TCA 72 bp AGCAGGTGCTGCTGCTCCTCGGGCACCTGTAGGTGCTaGGAAACCAGTTTCTTCAATGTGGCCACACTTTCT +
Preference number: 6 (lower is better)
Translates to: SRCCCSSGTCRC*ETSFFNVATLS
Trigger: AGAAAGTGTGGCCACATTGAAGAAACTGGTTTCTCAGCACCTACAGGTGCCCGAGGAGCAGCAGCACCTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052853.8