Pregenerated sensors for UBFD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030870Ensembl transcript IDs: ENSMUST00000033158.6, ENSMUST00000153640.3
Found 115 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGAGGAGGCGGTGAAGAGCACTGGGACCCACACAGAAAACAGGGCTaGCAGGATGGGCCTCAGAGCCAAGGTGGGAACACCAGAGGCCCG | + |
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Preference number: 1 (lower is better) Translates to: GGGGEEHWDPHRKQG*QDGPQSQGGNTRGP Trigger: CGGGCCTCTGGTGTTCCCACCTTGGCTCTGAGGCCCATCCTGCCAGCCCTGTTTTCTGTGTGGGTCCCAGTGCTCTTCACCGCCTCCTCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR TCA 90 bp | AGAAGCAGTTTGGCCCTTGGGCAGCAGGGGGATAATGGCAGGGCATaGGTACTGGGAGGAGGCGGTGAAGAGCACTGGGACCCACACAGA | + |
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Preference number: 1 (lower is better) Translates to: RSSLALGQQGDNGRA*VLGGGGEEHWDPHR Trigger: TCTGTGTGGGTCCCAGTGCTCTTCACCGCCTCCTCCCAGTACTCATGCCCTGCCATTATCCCCCTGCTGCCCAAGGGCCAAACTGCTTCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR CCA 90 bp | GTTTGGCCCTTGGGCAGCAGGGGGATAATGGCAGGGCATGAGTACTaGGAGGAGGCGGTGAAGAGCACTGGGACCCACACAGAAAACAGG | + |
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Preference number: 1 (lower is better) Translates to: VWPLGSRGIMAGHEY*EEAVKSTGTHTENR Trigger: CCTGTTTTCTGTGTGGGTCCCAGTGCTCTTCACCGCCTCCTCCCAGTACTCATGCCCTGCCATTATCCCCCTGCTGCCCAAGGGCCAAAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR GCA 90 bp | ATGCTCTACCTGCCACTTGGTCACTTCCTTGATAGGCCTGCCAAGTaGAGGAGGAGGCTGGGACAAGGAGCAAAGTGCACCTTCTCCAGG | + |
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Preference number: 1 (lower is better) Translates to: MLYLPLGHFLDRPAK*RRRLGQGAKCTFSR Trigger: CCTGGAGAAGGTGCACTTTGCTCCTTGTCCCAGCCTCCTCCTGCACTTGGCAGGCCTATCAAGGAAGTGACCAAGTGGCAGGTAGAGCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR GCA 90 bp | AAAAAGGCTCACAGAGGCTTTGGTCCTCTTGAAATGACACCGGCCTaGGTGAGAAGCAGTTTGGCCCTTGGGCAGCAGGGGGATAATGGC | + |
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Preference number: 1 (lower is better) Translates to: KKAHRGFGPLEMTPA*VRSSLALGQQGDNG Trigger: GCCATTATCCCCCTGCTGCCCAAGGGCCAAACTGCTTCTCACGCAGGCCGGTGTCATTTCAAGAGGACCAAAGCCTCTGTGAGCCTTTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR GCA 90 bp | GGAAGGCATGATGCCTGTGATGGCAGCCTACAGAAGGGCCACCAGTaGCACTTGCAGATGGGAGAACAGCCTTTTCAGTGGCTACATGAT | + |
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Preference number: 1 (lower is better) Translates to: GRHDACDGSLQKGHQ*HLQMGEQPFQWLHD Trigger: ATCATGTAGCCACTGAAAAGGCTGTTCTCCCATCTGCAAGTGGCACTGGTGGCCCTTCTGTAGGCTGCCATCACAGGCATCATGCCTTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR CCA 90 bp | CCTGTGATGGCAGCCTACAGAAGGGCCACCAGTGCCACTTGCAGATaGGAGAACAGCCTTTTCAGTGGCTACATGATGACAAGCAGAGGA | + |
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Preference number: 1 (lower is better) Translates to: PVMAAYRRATSATCR*ENSLFSGYMMTSRG Trigger: TCCTCTGCTTGTCATCATGTAGCCACTGAAAAGGCTGTTCTCCCATCTGCAAGTGGCACTGGTGGCCCTTCTGTAGGCTGCCATCACAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR TCA 90 bp | AGCCTTTTCAGTGGCTACATGATGACAAGCAGAGGAGCCTTGCTGTaGGTAGGACTCTCTTACCCAGCCTCATGTGATACCACCAGAAGC | + |
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Preference number: 1 (lower is better) Translates to: SLFSGYMMTSRGALL*VGLSYPASCDTTRS Trigger: GCTTCTGGTGGTATCACATGAGGCTGGGTAAGAGAGTCCTACTCACAGCAAGGCTCCTCTGCTTGTCATCATGTAGCCACTGAAAAGGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR TCA 90 bp | CTGGGAGGTTTCTCACCAAACCTTACTATGAGAGCCTGCGACCAGTaGGAGGAGAATTGCAAAGACAGCAGCAGAGAAACAGCAAACAGC | + |
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Preference number: 1 (lower is better) Translates to: LGGFSPNLTMRACDQ*EENCKDSSRETANS Trigger: GCTGTTTGCTGTTTCTCTGCTGCTGTCTTTGCAATTCTCCTCTCACTGGTCGCAGGCTCTCATAGTAAGGTTTGGTGAGAAACCTCCCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR CCA 90 bp | GACCACAGCTGTTACTTCCCATGTCCATTCCCAAGCAGCAGCACATaGAAGAGAGCCTGGCAAAGAGGTGAAAATGAGGTACCAAAAGAG | + |
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Preference number: 1 (lower is better) Translates to: DHSCYFPCPFPSSST*KRAWQRGENEVPKE Trigger: CTCTTTTGGTACCTCATTTTCACCTCTTTGCCAGGCTCTCTTCCATGTGCTGCTGCTTGGGAATGGACATGGGAAGTAACAGCTGTGGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR CCA 90 bp | GTGGGAACACCAGAGGCCCGATCACAGAGACCAAAACTAGGTATGTaGCACTGTCAAGACAGGTCTCAGAGACATTGGCAAACAAATGAC | + |
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Preference number: 1 (lower is better) Translates to: VGTPEARSQRPKLGM*HCQDRSQRHWQTND Trigger: GTCATTTGTTTGCCAATGTCTCTGAGACCTGTCTTGACAGTGCCACATACCTAGTTTTGGTCTCTGTGATCGGGCCTCTGGTGTTCCCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR CCA 90 bp | TACTTCCCATGTCCATTCCCAAGCAGCAGCACATGGAAGAGAGCCTaGCAAAGAGGTGAAAATGAGGTACCAAAAGAGAAACTGGCATCT | + |
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Preference number: 1 (lower is better) Translates to: YFPCPFPSSSTWKRA*QRGENEVPKEKLAS Trigger: AGATGCCAGTTTCTCTTTTGGTACCTCATTTTCACCTCTTTGCCAGGCTCTCTTCCATGTGCTGCTGCTTGGGAATGGACATGGGAAGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR GCA 90 bp | CTCAGAGACATTGGCAAACAAATGACAGTATTCAAGCCAAGAAGATaGTCTACCTGCCACTTGGTCACTTCCTTGATAGGCCTGCCAAGT | + |
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Preference number: 1 (lower is better) Translates to: LRDIGKQMTVFKPRR*STCHLVTSLIGLPS Trigger: ACTTGGCAGGCCTATCAAGGAAGTGACCAAGTGGCAGGTAGAGCATCTTCTTGGCTTGAATACTGTCATTTGTTTGCCAATGTCTCTGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR TCA 90 bp | TTCCATGAGAAAGGCAGCATCTCTGAACCTGGGATAAAGGACACTTaGACTGAACGCATGAGCAGAAGGACCGAATGGAGAAGCATAATT | + |
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Preference number: 1 (lower is better) Translates to: FHEKGSISEPGIKDT*TERMSRRTEWRSII Trigger: AATTATGCTTCTCCATTCGGTCCTTCTGCTCATGCGTTCAGTTCAAGTGTCCTTTATCCCAGGTTCAGAGATGCTGCCTTTCTCATGGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR TCA 90 bp | CAATGCTCCTCCAGGCACATTAAAGAGGAAAAATTCCCTTCTGGGTaGGATATGGCGACTTTTCTGAGACCTGGCAATGTAGCAAAGTTC | + |
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Preference number: 1 (lower is better) Translates to: QCSSRHIKEEKFPSG*DMATFLRPGNVAKF Trigger: GAACTTTGCTACATTGCCAGGTCTCAGAAAAGTCGCCATATCTCACCCAGAAGGGAATTTTTCCTCTTTAATGTGCCTGGAGGAGCATTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR CCA 90 bp | CCAAAACTAGGTATGTGGCACTGTCAAGACAGGTCTCAGAGACATTaGCAAACAAATGACAGTATTCAAGCCAAGAAGATGCTCTACCTG | + |
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Preference number: 1 (lower is better) Translates to: PKLGMWHCQDRSQRH*QTNDSIQAKKMLYL Trigger: CAGGTAGAGCATCTTCTTGGCTTGAATACTGTCATTTGTTTGCCAATGTCTCTGAGACCTGTCTTGACAGTGCCACATACCTAGTTTTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR CCA 90 bp | TCAAACTTCATTTTAAGAGCCAAAGCTACCTGCAAAGGCCCATCATaGATTAAAATACTTCTTACCAAGAGTCCTGCAACTCAGAGTCTA | + |
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Preference number: 1 (lower is better) Translates to: SNFILRAKATCKGPS*IKILLTKSPATQSL Trigger: TAGACTCTGAGTTGCAGGACTCTTGGTAAGAAGTATTTTAATCCATGATGGGCCTTTGCAGGTAGCTTTGGCTCTTAAAATGAAGTTTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR TCA 90 bp | ATCCCACATGTTAAGAAATATATAAAGACTGTTCACGGGACTGAGTaGCAAAATAGCAAATACTGCTGTGACCCAGACAGATCTAAACAC | + |
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Preference number: 1 (lower is better) Translates to: IPHVKKYIKTVHGTE*QNSKYCCDPDRSKH Trigger: GTGTTTAGATCTGTCTGGGTCACAGCAGTATTTGCTATTTTGTCACTCAGTCCCGTGAACAGTCTTTATATATTTCTTAACATGTGGGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR CCA 90 bp | CCAAACTACAGCTTAGAAGGGAAGGGCATAAATATTGTCATTAATTaGCTCACAAGGAATAGTCATCTTAGGCAATACATGCGAATACAT | + |
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Preference number: 1 (lower is better) Translates to: PNYSLEGKGINIVIN*LTRNSHLRQYMRIH Trigger: ATGTATTCGCATGTATTGCCTAAGATGACTATTCCTTGTGAGCCAATTAATGACAATATTTATGCCCTTCCCTTCTAAGCTGTAGTTTGG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR CAA 90 bp | CATGATGCCTGTGATGGCAGCCTACAGAAGGGCCACCAGTGCCACTaGCAGATGGGAGAACAGCCTTTTCAGTGGCTACATGATGACAAG | + |
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Preference number: 2 (lower is better) Translates to: HDACDGSLQKGHQCH*QMGEQPFQWLHDDK Trigger: CTTGTCATCATGTAGCCACTGAAAAGGCTGTTCTCCCATCTGCAAGTGGCACTGGTGGCCCTTCTGTAGGCTGCCATCACAGGCATCATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR-3UTR TCA 90 bp | GGGAACACCAGAGGCCCGATCACAGAGACCAAAACTAGGTATGTGGCACTGTCAGAAAGGCAGCATCTCTaGACCTGGGATAAAGGACAC | + |
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Preference number: 2 (lower is better) Translates to: GNTRGPITETKTRYVALSERQHL*TWDKGH Trigger: GTGTCCTTTATCCCAGGTTCAGAGATGCTGCCTTTC...TGACAGTGCCACATACCTAGTTTTGGTCTCTGTGATCGGGCCTCTGGTGTTCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR-3UTR GCA 90 bp | GGCCTGAATGGTAGCAAGAAGCAAGAGAAAGTTGGCAGATGGGTGAAAAGCCCAGAAATGACACCGGCCTaGGTGAGAAGCAGTTTGGCC | + |
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Preference number: 2 (lower is better) Translates to: GLNGSKKQEKVGRWVKSPEMTPA*VRSSLA Trigger: GGCCAAACTGCTTCTCACGCAGGCCGGTGTCATTTC...TGGGCTTTTCACCCATCTGCCAACTTTCTCTTGCTTCTTGCTACCATTCAGGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR-3UTR CCA 90 bp | ACCCAGACAGATCTAAACACTTATTCCCAGGGCTTCTGGCACTGTCTGTCTTCTCACAGAAAACAGGGCTaGCAGGATGGGCCTCAGAGC | + |
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Preference number: 2 (lower is better) Translates to: TQTDLNTYSQGFWHCLSSHRKQG*QDGPQS Trigger: GCTCTGAGGCCCATCCTGCCAGCCCTGTTTTCTGTG...AGAAGACAGACAGTGCCAGAAGCCCTGGGAATAAGTGTTTAGATCTGTCTGGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR-3UTR CCA 90 bp | TGCAACTCAGAGTCTAAGAGCTCTGAGCTGAGGGACCCAGGCTCAGCAGCAGTTTATTCCCAGGGCTTCTaGCACTGTCTGTCTTCTAAG | + |
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Preference number: 2 (lower is better) Translates to: CNSESKSSELRDPGSAAVYSQGF*HCLSSK Trigger: CTTAGAAGACAGACAGTGCCAGAAGCCCTGGGAATA...AACTGCTGCTGAGCCTGGGTCCCTCAGCTCAGAGCTCTTAGACTCTGAGTTGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR-3UTR TCA 90 bp | GGGAACACCAGAGGCCCGATCACAGAGACCAAAACTAGGTATGTGGCACTGTCAAGAGCAAGCTGGTCCTaGAAGCAACTTATCCCATTC | + |
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Preference number: 2 (lower is better) Translates to: GNTRGPITETKTRYVALSRASWS*KQLIPF Trigger: GAATGGGATAAGTTGCTTTCAGGACCAGCTTGCTCT...TGACAGTGCCACATACCTAGTTTTGGTCTCTGTGATCGGGCCTCTGGTGTTCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR-3UTR TCA 90 bp | CACCAGTGCCACTTGCAGATGGGAGAACAGCCTTTTCAGTGGCTACATGATGACTTACCCAGCCTCATGTaGTACCACCAGAAGCCTTCT | + |
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Preference number: 2 (lower is better) Translates to: HQCHLQMGEQPFQWLHDDLPSLM*YHQKPS Trigger: AGAAGGCTTCTGGTGGTATCACATGAGGCTGGGTAA...GTCATCATGTAGCCACTGAAAAGGCTGTTCTCCCATCTGCAAGTGGCACTGGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR-3UTR GCA 90 bp | TGCAACTCAGAGTCTAAGAGCTCTGAGCTGAGGGACCCAGGCTCAGCAGCAGTTACCTTCTCCAGGAACTaGAGGCCAATAAGAACAGAA | + |
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Preference number: 2 (lower is better) Translates to: CNSESKSSELRDPGSAAVTFSRN*RPIRTE Trigger: TTCTGTTCTTATTGGCCTGCAGTTCCTGGAGAAGGT...AACTGCTGCTGAGCCTGGGTCCCTCAGCTCAGAGCTCTTAGACTCTGAGTTGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR-3UTR GCA 90 bp | GGGAACACCAGAGGCCCGATCACAGAGACCAAAACTAGGTATGTGGCACTGTCATTCAAGCCAAGAAGATaGTCTACCTGCCACTTGGTC | + |
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Preference number: 2 (lower is better) Translates to: GNTRGPITETKTRYVALSFKPRR*STCHLV Trigger: GACCAAGTGGCAGGTAGAGCATCTTCTTGGCTTGAA...TGACAGTGCCACATACCTAGTTTTGGTCTCTGTGATCGGGCCTCTGGTGTTCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR-3UTR CCA 90 bp | GCATACATCTATCTATTCCCTCCCTTCTTGGCTCCTAGCAAAGAAAAGGGCAGGAGTGCAGGAGGAGGCTaGGACAAGGAGCAAAGTGCA | + |
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Preference number: 2 (lower is better) Translates to: AYIYLFPPFLAPSKEKGRSAGGG*DKEQSA Trigger: TGCACTTTGCTCCTTGTCCCAGCCTCCTCCTGCACT...CCTGCCCTTTTCTTTGCTAGGAGCCAAGAAGGGAGGGAATAGATAGATGTATGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR CAA 90 bp | AAACAAATGACAGTATTCAAGCCAAGAAGATGCTCTACCTGCCACTaGGTCACTTCCTTGATAGGCCTGCCAAGTGCAGGAGGAGGCTGG | + |
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Preference number: 2 (lower is better) Translates to: KQMTVFKPRRCSTCH*VTSLIGLPSAGGGW Trigger: CCAGCCTCCTCCTGCACTTGGCAGGCCTATCAAGGAAGTGACCAAGTGGCAGGTAGAGCATCTTCTTGGCTTGAATACTGTCATTTGTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR CAA 90 bp | GTGAAAAGCCCAACCTTGGCATACATCTATCTATTCCCTCCCTTCTaGGCTCCTAGCAAAGAAAAGGGCAGGCCAACTGCAATAGCTCAC | + |
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Preference number: 2 (lower is better) Translates to: VKSPTLAYIYLFPPF*APSKEKGRPTAIAH Trigger: GTGAGCTATTGCAGTTGGCCTGCCCTTTTCTTTGCTAGGAGCCAAGAAGGGAGGGAATAGATAGATGTATGCCAAGGTTGGGCTTTTCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR-3UTR TCA 90 bp | AACAGCACAAGGATCATCCACCAAGAGACTGTCCCTCCTTTCAGTCAATCAAGGCTTGAACTGAACGCATaGGCAGAAGGACCGAATGGA | + |
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Preference number: 2 (lower is better) Translates to: NSTRIIHQETVPPFSQSRLELNA*AEGPNG Trigger: TCCATTCGGTCCTTCTGCTCATGCGTTCAGTTCAAG...CCTTGATTGACTGAAAGGAGGGACAGTCTCTTGGTGGATGATCCTTGTGCTGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR-3UTR GCA 90 bp | CACCAGTGCCACTTGCAGATGGGAGAACAGCCTTTTCAGTGGCTACATGATGACCAACTATCACTGAGGTaGAACACAGGCAGTTTCTTG | + |
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Preference number: 2 (lower is better) Translates to: HQCHLQMGEQPFQWLHDDQLSLR*NTGSFL Trigger: CAAGAAACTGCCTGTGTTGCACCTCAGTGATAGTTG...GTCATCATGTAGCCACTGAAAAGGCTGTTCTCCCATCTGCAAGTGGCACTGGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR-3UTR GCA 90 bp | CACCAGTGCCACTTGCAGATGGGAGAACAGCCTTTTCAGTGGCTACATGATGACGGAAGAGTATTCCAATaGTCACACAGATTTAGTCAG | + |
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Preference number: 2 (lower is better) Translates to: HQCHLQMGEQPFQWLHDDGRVFQ*SHRFSQ Trigger: CTGACTAAATCTGTGTGAGCATTGGAATACTCTTCC...GTCATCATGTAGCCACTGAAAAGGCTGTTCTCCCATCTGCAAGTGGCACTGGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR-3UTR TCA 90 bp | AACAGCACAAGGATCATCCACCAAGAGACTGTCCCTCCTTTCAGTCAATCAAGGAGATTTGTGTGTGTGTaGACAAAGTCCCAGAACTCT | + |
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Preference number: 2 (lower is better) Translates to: NSTRIIHQETVPPFSQSRRFVCV*TKSQNS Trigger: AGAGTTCTGGGACTTTGTTCACACACACACAAATCT...CCTTGATTGACTGAAAGGAGGGACAGTCTCTTGGTGGATGATCCTTGTGCTGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR-3UTR GCA 90 bp | ACCCAGACAGATCTAAACACTTATTCCCAGGGCTTCTGGCACTGTCTGTCTTCTCCAGACTCATCACAATaGAGTCCAAATGTTTGCAAC | + |
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Preference number: 2 (lower is better) Translates to: TQTDLNTYSQGFWHCLSSPDSSQ*SPNVCN Trigger: GTTGCAAACATTTGGACTGCATTGTGATGAGTCTGG...AGAAGACAGACAGTGCCAGAAGCCCTGGGAATAAGTGTTTAGATCTGTCTGGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR-3UTR CCA 90 bp | GGCCTGAATGGTAGCAAGAAGCAAGAGAAAGTTGGCAGATGGGTGAAAAGCCCAACACACAAAAATATATaGCTTACTCACCACCCCCAT | + |
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Preference number: 2 (lower is better) Translates to: GLNGSKKQEKVGRWVKSPTHKNI*LTHHPH Trigger: ATGGGGGTGGTGAGTAAGCCATATATTTTTGTGTGT...TGGGCTTTTCACCCATCTGCCAACTTTCTCTTGCTTCTTGCTACCATTCAGGCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR-3UTR TCA 90 bp | GGCCTGAATGGTAGCAAGAAGCAAGAGAAAGTTGGCAGATGGGTGAAAAGCCCACAAAACAAAACTATCTaGATCAATGAGCACACACAC | + |
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Preference number: 2 (lower is better) Translates to: GLNGSKKQEKVGRWVKSPQNKTI*INEHTH Trigger: GTGTGTGTGCTCATTGATTCAGATAGTTTTGTTTTG...TGGGCTTTTCACCCATCTGCCAACTTTCTCTTGCTTCTTGCTACCATTCAGGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR-3UTR CCA 90 bp | GCATACATCTATCTATTCCCTCCCTTCTTGGCTCCTAGCAAAGAAAAGGGCAGGAGCAGAAGGACCGAATaGAGAAGCATAATTCAAACA | + |
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Preference number: 2 (lower is better) Translates to: AYIYLFPPFLAPSKEKGRSRRTE*RSIIQT Trigger: TGTTTGAATTATGCTTCTCCATTCGGTCCTTCTGCT...CCTGCCCTTTTCTTTGCTAGGAGCCAAGAAGGGAGGGAATAGATAGATGTATGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR-3UTR GCA 90 bp | GACAAAATAGCAAATACTGCTGTGACCCAGACAGATCTAAACACTTATTCCCAGAGAAGATGCTCTACCTaGCACTTGGTCACTTCCTTG | + |
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Preference number: 2 (lower is better) Translates to: DKIANTAVTQTDLNTYSQRRCST*HLVTSL Trigger: CAAGGAAGTGACCAAGTGGCAGGTAGAGCATCTTCT...CTGGGAATAAGTGTTTAGATCTGTCTGGGTCACAGCAGTATTTGCTATTTTGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR-3UTR GCA 90 bp | GGCCTGAATGGTAGCAAGAAGCAAGAGAAAGTTGGCAGATGGGTGAAAAGCCCAAAAAACATACTAGGATaGTACCTAAAGGGAAGAGTA | + |
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Preference number: 2 (lower is better) Translates to: GLNGSKKQEKVGRWVKSPKNILG*YLKGRV Trigger: TACTCTTCCCTTTAGGTAGCATCCTAGTATGTTTTT...TGGGCTTTTCACCCATCTGCCAACTTTCTCTTGCTTCTTGCTACCATTCAGGCC 43% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR-3UTR TCA 90 bp | TCATTAATTGGCTCACAAGGAATAGTCATCTTAGGCAATACATGCGAATACATTCACCAAACCTTACTATaGGAGCCTGCGACCAGTGAG | + |
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Preference number: 2 (lower is better) Translates to: SLIGSQGIVILGNTCEYIHQTLL*EPATSE Trigger: CTCACTGGTCGCAGGCTCTCATAGTAAGGTTTGGTG...AATGTATTCGCATGTATTGCCTAAGATGACTATTCCTTGTGAGCCAATTAATGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR-3UTR CCA 90 bp | TCATTAATTGGCTCACAAGGAATAGTCATCTTAGGCAATACATGCGAATACATTCCAAGCAGCAGCACATaGAAGAGAGCCTGGCAAAGA | + |
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Preference number: 2 (lower is better) Translates to: SLIGSQGIVILGNTCEYIPSSST*KRAWQR Trigger: TCTTTGCCAGGCTCTCTTCCATGTGCTGCTGCTTGG...AATGTATTCGCATGTATTGCCTAAGATGACTATTCCTTGTGAGCCAATTAATGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR-3UTR TCA 90 bp | CAGTCAAACTTCATTTTAAGAGCCAAAGCTACCTGCAAAGGCCCATCATGGATTCACATCACCTCAGATTaGATAGAGATTTGTGTGTGT | + |
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Preference number: 2 (lower is better) Translates to: QSNFILRAKATCKGPSWIHITSD*IEICVC Trigger: ACACACACAAATCTCTATTCAATCTGAGGTGATGTG...AATCCATGATGGGCCTTTGCAGGTAGCTTTGGCTCTTAAAATGAAGTTTGACTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR-3UTR TCA 90 bp | GAAGGGAAGGGCATAAATATTGTCATTAATTGGCTCACAAGGAATAGTCATCTTAAAGGACACTTGAACTaGACGCATGAGCAGAAGGAC | + |
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Preference number: 2 (lower is better) Translates to: EGKGINIVINWLTRNSHLKGHLN*THEQKD Trigger: GTCCTTCTGCTCATGCGTTCAGTTCAAGTGTCCTTT...AAGATGACTATTCCTTGTGAGCCAATTAATGACAATATTTATGCCCTTCCCTTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR CAA 90 bp | AAAGAAGGAAACAACCAGAAAGCTTTTGATGATTCCGTCTCAGCATaGCTGGTAGGTCTACTCTCAAACAGACTTAAGAGTATAAGAGTA | + |
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Preference number: 2 (lower is better) Translates to: KEGNNQKAFDDSVSA*LVGLLSNRLKSIRV Trigger: TACTCTTATACTCTTAAGTCTGTTTGAGAGTAGACCTACCAGCAATGCTGAGACGGAATCATCAAAAGCTTTCTGGTTGTTTCCTTCTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| 3UTR-3UTR CCA 90 bp | TCATTAATTGGCTCACAAGGAATAGTCATCTTAGGCAATACATGCGAATACATTACATGGAAGAGAGCCTaGCAAAGAGGTGAAAATGAG | + |
|
Preference number: 2 (lower is better) Translates to: SLIGSQGIVILGNTCEYITWKRA*QRGENE Trigger: CTCATTTTCACCTCTTTGCCAGGCTCTCTTCCATGT...AATGTATTCGCATGTATTGCCTAAGATGACTATTCCTTGTGAGCCAATTAATGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR CCA 72 bp | TTGGGCAGCAGGGGGATAATGGCAGGGCATGAGTACTaGGAGGAGGCGGTGAAGAGCACTGGGACCCACACA | + |
|
Preference number: 3 (lower is better) Translates to: LGSRGIMAGHEY*EEAVKSTGTHT Trigger: TGTGTGGGTCCCAGTGCTCTTCACCGCCTCCTCCCAGTACTCATGCCCTGCCATTATCCCCCTGCTGCCCAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR GCA 72 bp | CACAGAGGCTTTGGTCCTCTTGAAATGACACCGGCCTaGGTGAGAAGCAGTTTGGCCCTTGGGCAGCAGGGG | + |
|
Preference number: 3 (lower is better) Translates to: HRGFGPLEMTPA*VRSSLALGQQG Trigger: CCCCTGCTGCCCAAGGGCCAAACTGCTTCTCACGCAGGCCGGTGTCATTTCAAGAGGACCAAAGCCTCTGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR GCA 72 bp | CTGCCACTTGGTCACTTCCTTGATAGGCCTGCCAAGTaGAGGAGGAGGCTGGGACAAGGAGCAAAGTGCACC | + |
|
Preference number: 3 (lower is better) Translates to: LPLGHFLDRPAK*RRRLGQGAKCT Trigger: GGTGCACTTTGCTCCTTGTCCCAGCCTCCTCCTGCACTTGGCAGGCCTATCAAGGAAGTGACCAAGTGGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR CCA 72 bp | AAAACAGGGCTGGCAGGATGGGCCTCAGAGCCAAGGTaGGAACACCAGAGGCCCGATCACAGAGACCAAAAC | + |
|
Preference number: 3 (lower is better) Translates to: KTGLAGWASEPR*EHQRPDHRDQN Trigger: GTTTTGGTCTCTGTGATCGGGCCTCTGGTGTTCCCACCTTGGCTCTGAGGCCCATCCTGCCAGCCCTGTTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR GCA 72 bp | GATGCCTGTGATGGCAGCCTACAGAAGGGCCACCAGTaGCACTTGCAGATGGGAGAACAGCCTTTTCAGTGG | + |
|
Preference number: 3 (lower is better) Translates to: DACDGSLQKGHQ*HLQMGEQPFQW Trigger: CCACTGAAAAGGCTGTTCTCCCATCTGCAAGTGGCACTGGTGGCCCTTCTGTAGGCTGCCATCACAGGCATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR TCA 72 bp | CTTGCTGTGAGTAGGACTCTCTTACCCAGCCTCATGTaGTACCACCAGAAGCCTTCTCCTGCGTGCCCTCTC | + |
|
Preference number: 3 (lower is better) Translates to: LAVSRTLLPSLM*YHQKPSPACPL Trigger: GAGAGGGCACGCAGGAGAAGGCTTCTGGTGGTATCACATGAGGCTGGGTAAGAGAGTCCTACTCACAGCAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR CCA 72 bp | ACTTCCTTGATAGGCCTGCCAAGTGCAGGAGGAGGCTaGGACAAGGAGCAAAGTGCACCTTCTCCAGGAACT | + |
|
Preference number: 3 (lower is better) Translates to: TSLIGLPSAGGG*DKEQSAPSPGT Trigger: AGTTCCTGGAGAAGGTGCACTTTGCTCCTTGTCCCAGCCTCCTCCTGCACTTGGCAGGCCTATCAAGGAAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR CCA 72 bp | GCAGCCTACAGAAGGGCCACCAGTGCCACTTGCAGATaGGAGAACAGCCTTTTCAGTGGCTACATGATGACA | + |
|
Preference number: 3 (lower is better) Translates to: AAYRRATSATCR*ENSLFSGYMMT Trigger: TGTCATCATGTAGCCACTGAAAAGGCTGTTCTCCCATCTGCAAGTGGCACTGGTGGCCCTTCTGTAGGCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR TCA 72 bp | AGTGGCTACATGATGACAAGCAGAGGAGCCTTGCTGTaGGTAGGACTCTCTTACCCAGCCTCATGTGATACC | + |
|
Preference number: 3 (lower is better) Translates to: SGYMMTSRGALL*VGLSYPASCDT Trigger: GGTATCACATGAGGCTGGGTAAGAGAGTCCTACTCACAGCAAGGCTCCTCTGCTTGTCATCATGTAGCCACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR GCA 72 bp | ACCCAGCCTCATGTGATACCACCAGAAGCCTTCTCCTaGGTGCCCTCTCATCTGACTGAAAGAATTGTACAG | + |
|
Preference number: 3 (lower is better) Translates to: TQPHVIPPEAFS*VPSHLTERIVQ Trigger: CTGTACAATTCTTTCAGTCAGATGAGAGGGCACGCAGGAGAAGGCTTCTGGTGGTATCACATGAGGCTGGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR CCA 72 bp | CCAGAGGCCCGATCACAGAGACCAAAACTAGGTATGTaGCACTGTCAAGACAGGTCTCAGAGACATTGGCAA | + |
|
Preference number: 3 (lower is better) Translates to: PEARSQRPKLGM*HCQDRSQRHWQ Trigger: TTGCCAATGTCTCTGAGACCTGTCTTGACAGTGCCACATACCTAGTTTTGGTCTCTGTGATCGGGCCTCTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR TCA 72 bp | CTGTCTTCTAAGAGCTTCTGGCAAAGCCTTCCATACTaGCAGAGTCAGGAGCCAGAGCTCAAGCAGATTCAG | + |
|
Preference number: 3 (lower is better) Translates to: LSSKSFWQSLPY*QSQEPELKQIQ Trigger: CTGAATCTGCTTGAGCTCTGGCTCCTGACTCTGTCAGTATGGAAGGCTTTGCCAGAAGCTCTTAGAAGACAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR CCA 72 bp | AAGCTAAAGGAAGGCTGTCAACAAGCAAACCAGCAGTaGAACGCCTCAGAACAGGGATCCAAAGGGTACACA | + |
|
Preference number: 3 (lower is better) Translates to: KLKEGCQQANQQ*NASEQGSKGYT Trigger: TGTGTACCCTTTGGATCCCTGTTCTGAGGCGTTCCACTGCTGGTTTGCTTGTTGACAGCCTTCCTTTAGCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR-3UTR CAA 90 bp | ACCCAGACAGATCTAAACACTTATTCCCAGGGCTTCTGGCACTGTCTGTCTTCTTTGTTGGAATACCACTaGCTGACCCACTGGGTCAGA | + |
|
Preference number: 3 (lower is better) Translates to: TQTDLNTYSQGFWHCLSSLLEYH*LTHWVR Trigger: TCTGACCCAGTGGGTCAGCAAGTGGTATTCCAACAA...AGAAGACAGACAGTGCCAGAAGCCCTGGGAATAAGTGTTTAGATCTGTCTGGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR CCA 72 bp | GTCAGGAGCCAGAGCTCAAGCAGATTCAGCAAGCTCTaGAAAGCAATACTCAAAACGGCTCCATATGAAAGG | + |
|
Preference number: 3 (lower is better) Translates to: VRSQSSSRFSKL*KAILKTAPYER Trigger: CCTTTCATATGGAGCCGTTTTGAGTATTGCTTTCCAGAGCTTGCTGAATCTGCTTGAGCTCTGGCTCCTGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR CCA 72 bp | ACCCAGACAGATCTAAACACTTATTCCCAGGGCTTCTaGCACTGTCTGTCTTCTAAGAGCTTCTGGCAAAGC | + |
|
Preference number: 3 (lower is better) Translates to: TQTDLNTYSQGF*HCLSSKSFWQS Trigger: GCTTTGCCAGAAGCTCTTAGAAGACAGACAGTGCCAGAAGCCCTGGGAATAAGTGTTTAGATCTGTCTGGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR CCA 72 bp | CAACCTTGGCATACATCTATCTATTCCCTCCCTTCTTaGCTCCTAGCAAAGAAAAGGGCAGGCCAACTGCAA | + |
|
Preference number: 3 (lower is better) Translates to: QPWHTSIYSLPS*LLAKKRAGQLQ Trigger: TTGCAGTTGGCCTGCCCTTTTCTTTGCTAGGAGCCAAGAAGGGAGGGAATAGATAGATGTATGCCAAGGTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR-3UTR CAA 90 bp | TGCAACTCAGAGTCTAAGAGCTCTGAGCTGAGGGACCCAGGCTCAGCAGCAGTTATGCAGTCCAAATGTTaGCAACCAAAGACATCAATA | + |
|
Preference number: 3 (lower is better) Translates to: CNSESKSSELRDPGSAAVMQSKC*QPKTSI Trigger: TATTGATGTCTTTGGTTGCAAACATTTGGACTGCAT...AACTGCTGCTGAGCCTGGGTCCCTCAGCTCAGAGCTCTTAGACTCTGAGTTGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR-3UTR CAA 90 bp | GGGAACACCAGAGGCCCGATCACAGAGACCAAAACTAGGTATGTGGCACTGTCAGAGAAACTGGCATCTTaGGGATTAAAACGAAATCAT | + |
|
Preference number: 3 (lower is better) Translates to: GNTRGPITETKTRYVALSEKLAS*GLKRNH Trigger: ATGATTTCGTTTTAATCCCAAAGATGCCAGTTTCTC...TGACAGTGCCACATACCTAGTTTTGGTCTCTGTGATCGGGCCTCTGGTGTTCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR-3UTR CAA 90 bp | GAAGGGAAGGGCATAAATATTGTCATTAATTGGCTCACAAGGAATAGTCATCTTTCAGAGCAGGGGGCCTaGGAGCAGCAAATCCTAGGC | + |
|
Preference number: 3 (lower is better) Translates to: EGKGINIVINWLTRNSHLSEQGA*EQQILG Trigger: GCCTAGGATTTGCTGCTCCAAGGCCCCCTGCTCTGA...AAGATGACTATTCCTTGTGAGCCAATTAATGACAATATTTATGCCCTTCCCTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR GCA 72 bp | CAAATGACAGTATTCAAGCCAAGAAGATGCTCTACCTaGCACTTGGTCACTTCCTTGATAGGCCTGCCAAGT | + |
|
Preference number: 3 (lower is better) Translates to: QMTVFKPRRCST*HLVTSLIGLPS Trigger: ACTTGGCAGGCCTATCAAGGAAGTGACCAAGTGGCAGGTAGAGCATCTTCTTGGCTTGAATACTGTCATTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR TCA 72 bp | TACCACCAGAAGCCTTCTCCTGCGTGCCCTCTCATCTaGCTGAAAGAATTGTACAGAAATAATCCTGAGGAA | + |
|
Preference number: 3 (lower is better) Translates to: YHQKPSPACPLI*LKELYRNNPEE Trigger: TTCCTCAGGATTATTTCTGTACAATTCTTTCAGTCAGATGAGAGGGCACGCAGGAGAAGGCTTCTGGTGGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR TCA 72 bp | TCCAGGCACATTAAAGAGGAAAAATTCCCTTCTGGGTaGGATATGGCGACTTTTCTGAGACCTGGCAATGTA | + |
|
Preference number: 3 (lower is better) Translates to: SRHIKEEKFPSG*DMATFLRPGNV Trigger: TACATTGCCAGGTCTCAGAAAAGTCGCCATATCTCACCCAGAAGGGAATTTTTCCTCTTTAATGTGCCTGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR TCA 72 bp | ATGGTAGCAAGAAGCAAGAGAAAGTTGGCAGATGGGTaGAAAGCCCAACCTTGGCATACATCTATCTATTCC | + |
|
Preference number: 3 (lower is better) Translates to: MVARSKRKLADG*KAQPWHTSIYS Trigger: GGAATAGATAGATGTATGCCAAGGTTGGGCTTTTCACCCATCTGCCAACTTTCTCTTGCTTCTTGCTACCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR GCA 72 bp | ATTGGCAAACAAATGACAGTATTCAAGCCAAGAAGATaGTCTACCTGCCACTTGGTCACTTCCTTGATAGGC | + |
|
Preference number: 3 (lower is better) Translates to: IGKQMTVFKPRR*STCHLVTSLIG Trigger: GCCTATCAAGGAAGTGACCAAGTGGCAGGTAGAGCATCTTCTTGGCTTGAATACTGTCATTTGTTTGCCAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR CCA 72 bp | GGTATGTGGCACTGTCAAGACAGGTCTCAGAGACATTaGCAAACAAATGACAGTATTCAAGCCAAGAAGATG | + |
|
Preference number: 3 (lower is better) Translates to: GMWHCQDRSQRH*QTNDSIQAKKM Trigger: CATCTTCTTGGCTTGAATACTGTCATTTGTTTGCCAATGTCTCTGAGACCTGTCTTGACAGTGCCACATACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR-3UTR CAA 90 bp | ATTGTCATTAATTGGCTCACAAGGAATAGTCATCTTAGGCAATACATGCGAATATATCCCATTCTGTTGTaGGAATACCACTTGCTGACC | + |
|
Preference number: 3 (lower is better) Translates to: IVINWLTRNSHLRQYMRIYPILL*EYHLLT Trigger: GGTCAGCAAGTGGTATTCCAACAACAGAATGGGATA...TATTCGCATGTATTGCCTAAGATGACTATTCCTTGTGAGCCAATTAATGACAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR TCA 72 bp | GTTAAGAAATATATAAAGACTGTTCACGGGACTGAGTaGCAAAATAGCAAATACTGCTGTGACCCAGACAGA | + |
|
Preference number: 3 (lower is better) Translates to: VKKYIKTVHGTE*QNSKYCCDPDR Trigger: TCTGTCTGGGTCACAGCAGTATTTGCTATTTTGTCACTCAGTCCCGTGAACAGTCTTTATATATTTCTTAAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR-3UTR CAA 90 bp | ATTGTCATTAATTGGCTCACAAGGAATAGTCATCTTAGGCAATACATGCGAATACCACATCACCTCAGATaGAATAGAGATTTGTGTGTG | + |
|
Preference number: 3 (lower is better) Translates to: IVINWLTRNSHLRQYMRIPHHLR*NRDLCV Trigger: CACACACAAATCTCTATTCAATCTGAGGTGATGTGG...TATTCGCATGTATTGCCTAAGATGACTATTCCTTGTGAGCCAATTAATGACAAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR CAA 72 bp | GCTATATGGCAAGCCGGCTCCTCAGAGCAGGGGGCCTaGGAGCAGCAAATCCTAGGCTGTGGTGATAGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: AIWQAGSSEQGA*EQQILGCGDRQ Trigger: CTGCCTATCACCACAGCCTAGGATTTGCTGCTCCAAGGCCCCCTGCTCTGAGGAGCCGGCTTGCCATATAGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR CAA 72 bp | CCTCTTGAAATGACACCGGCCTGCGTGAGAAGCAGTTaGGCCCTTGGGCAGCAGGGGGATAATGGCAGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: PLEMTPACVRSS*ALGQQGDNGRA Trigger: TGCCCTGCCATTATCCCCCTGCTGCCCAAGGGCCAAACTGCTTCTCACGCAGGCCGGTGTCATTTCAAGAGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| CDS-3UTR CCA 90 bp | AAGGAAGGCTGTCAACAAGCAAACCAGCAGTGGAACGCCTCAGAACAGGGATCCAGACAAGGGTACCGTTaGCAGGCGCTCCTGGGCACC | + |
|
Preference number: 4 (lower is better) Translates to: KEGCQQANQQWNASEQGSRQGYR*QALLGT Trigger: GGTGCCCAGGAGCGCCTGCCAACGGTACCCTTGTCT...GGATCCCTGTTCTGAGGCGTTCCACTGCTGGTTTGCTTGTTGACAGCCTTCCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| CDS-3UTR TCA 90 bp | CAGTCAAACTTCATTTTAAGAGCCAAAGCTACCTGCAAAGGCCCATCATGGATTCGTCCTCGCCGTTGCTaGCCGAGGCCTGGGCCGCAG | + |
|
Preference number: 4 (lower is better) Translates to: QSNFILRAKATCKGPSWIRPRRC*PRPGPQ Trigger: CTGCGGCCCAGGCCTCGGTCAGCAACGGCGAGGACG...AATCCATGATGGGCCTTTGCAGGTAGCTTTGGCTCTTAAAATGAAGTTTGACTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| CDS-3UTR CCA 90 bp | GGCTTTGGTCCTCTTGAAATGACACCGGCCTGCGTGAGAAGCAGTTTGGCCCTTCTGGCCGGAAACAGGTaGAGGTTTCTATGGAGACCC | + |
|
Preference number: 4 (lower is better) Translates to: GFGPLEMTPACVRSSLALLAGNR*RFLWRP Trigger: GGGTCTCCATAGAAACCTCCACCTGTTTCCGGCCAG...AAGGGCCAAACTGCTTCTCACGCAGGCCGGTGTCATTTCAAGAGGACCAAAGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| CDS-3UTR TCA 90 bp | CCAAACTACAGCTTAGAAGGGAAGGGCATAAATATTGTCATTAATTGGCTCACACGGCCTCCACGCAGTTaGGGGGCCGTGCGGGCGCCT | + |
|
Preference number: 4 (lower is better) Translates to: PNYSLEGKGINIVINWLTRPPRS*GAVRAP Trigger: AGGCGCCCGCACGGCCCCTCAACTGCGTGGAGGCCG...TGTGAGCCAATTAATGACAATATTTATGCCCTTCCCTTCTAAGCTGTAGTTTGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR CAA 72 bp | TGTGATGGCAGCCTACAGAAGGGCCACCAGTGCCACTaGCAGATGGGAGAACAGCCTTTTCAGTGGCTACAT | + |
|
Preference number: 4 (lower is better) Translates to: CDGSLQKGHQCH*QMGEQPFQWLH Trigger: ATGTAGCCACTGAAAAGGCTGTTCTCCCATCTGCAAGTGGCACTGGTGGCCCTTCTGTAGGCTGCCATCACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| CDS-3UTR GCA 90 bp | GGCCTGAATGGTAGCAAGAAGCAAGAGAAAGTTGGCAGATGGGTGAAAAGCCCATTCCTGTGTTGCTTCTaGCTGCAGAGGGGCTCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: GLNGSKKQEKVGRWVKSPFLCCF*LQRGSF Trigger: GAAGGAGCCCCTCTGCAGGCAGAAGCAACACAGGAA...TGGGCTTTTCACCCATCTGCCAACTTTCTCTTGCTTCTTGCTACCATTCAGGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| CDS-3UTR CCA 90 bp | GTGGGCTGGATTCCCAAACTACAGCTTAGAAGGGAAGGGCATAAATATTGTCATGTTGGCAGGCGCTCCTaGGCACCCTTAACAGACGGC | + |
|
Preference number: 4 (lower is better) Translates to: VGWIPKLQLRREGHKYCHVGRRS*APLTDG Trigger: GCCGTCTGTTAAGGGTGCCCAGGAGCGCCTGCCAAC...ATGACAATATTTATGCCCTTCCCTTCTAAGCTGTAGTTTGGGAATCCAGCCCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| CDS-3UTR GCA 90 bp | GAAGGGAAGGGCATAAATATTGTCATTAATTGGCTCACAAGGAATAGTCATCTTTGCCTGGCTCCTCCATaGCATCCGGGGCTCCGGCCG | + |
|
Preference number: 4 (lower is better) Translates to: EGKGINIVINWLTRNSHLCLAPP*HPGLRP Trigger: CGGCCGGAGCCCCGGATGGCATGGAGGAGCCAGGCA...AAGATGACTATTCCTTGTGAGCCAATTAATGACAATATTTATGCCCTTCCCTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| CDS-3UTR GCA 90 bp | ATTGTCATTAATTGGCTCACAAGGAATAGTCATCTTAGGCAATACATGCGAATAGCAGTTGAGGGGCCGTaGGGGCGCCTCGGTGGCCAC | + |
|
Preference number: 4 (lower is better) Translates to: IVINWLTRNSHLRQYMRIAVEGP*GRLGGH Trigger: GTGGCCACCGAGGCGCCCGCACGGCCCCTCAACTGC...TATTCGCATGTATTGCCTAAGATGACTATTCCTTGTGAGCCAATTAATGACAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| CDS-3UTR GCA 90 bp | CACCAGTGCCACTTGCAGATGGGAGAACAGCCTTTTCAGTGGCTACATGATGACGTTTTCTTCAGCCTTTaGATCCTGCTGGGCAGCATC | + |
|
Preference number: 4 (lower is better) Translates to: HQCHLQMGEQPFQWLHDDVFFSL*ILLGSI Trigger: GATGCTGCCCAGCAGGATGCAAAGGCTGAAGAAAAC...GTCATCATGTAGCCACTGAAAAGGCTGTTCTCCCATCTGCAAGTGGCACTGGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| CDS-3UTR CCA 90 bp | CCAAACTACAGCTTAGAAGGGAAGGGCATAAATATTGTCATTAATTGGCTCACACGGGAAGAAGCGAGCTaGCGGAGATTGGCCCCCGCA | + |
|
Preference number: 4 (lower is better) Translates to: PNYSLEGKGINIVINWLTREEAS*RRLAPA Trigger: TGCGGGGGCCAATCTCCGCCAGCTCGCTTCTTCCCG...TGTGAGCCAATTAATGACAATATTTATGCCCTTCCCTTCTAAGCTGTAGTTTGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR CAA 72 bp | CCAACCTTGGCATACATCTATCTATTCCCTCCCTTCTaGGCTCCTAGCAAAGAAAAGGGCAGGCCAACTGCA | + |
|
Preference number: 4 (lower is better) Translates to: PTLAYIYLFPPF*APSKEKGRPTA Trigger: TGCAGTTGGCCTGCCCTTTTCTTTGCTAGGAGCCAAGAAGGGAGGGAATAGATAGATGTATGCCAAGGTTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR CAA 72 bp | AAGCTGGTCCTGAAAGCAACTTATCCCATTCTGTTGTaGGAATACCACTTGCTGACCCACTGGGTCAGACGT | + |
|
Preference number: 4 (lower is better) Translates to: KLVLKATYPILL*EYHLLTHWVRR Trigger: ACGTCTGACCCAGTGGGTCAGCAAGTGGTATTCCAACAACAGAATGGGATAAGTTGCTTTCAGGACCAGCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR CAA 72 bp | CAAGAGAAAGTTGGCAGATGGGTGAAAAGCCCAACCTaGGCATACATCTATCTATTCCCTCCCTTCTTGGCT | + |
|
Preference number: 4 (lower is better) Translates to: QEKVGRWVKSPT*AYIYLFPPFLA Trigger: AGCCAAGAAGGGAGGGAATAGATAGATGTATGCCAAGGTTGGGCTTTTCACCCATCTGCCAACTTTCTCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| CDS-3UTR CCA 90 bp | GCATACATCTATCTATTCCCTCCCTTCTTGGCTCCTAGCAAAGAAAAGGGCAGGCCTTCACGTCGTGTTTaGTCTTGTTCCAGATTATCT | + |
|
Preference number: 4 (lower is better) Translates to: AYIYLFPPFLAPSKEKGRPSRRV*SCSRLS Trigger: AGATAATCTGGAACAAGACCAAACACGACGTGAAGG...CCTGCCCTTTTCTTTGCTAGGAGCCAAGAAGGGAGGGAATAGATAGATGTATGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| CDS-3UTR GCA 90 bp | GTGGGCTGGATTCCCAAACTACAGCTTAGAAGGGAAGGGCATAAATATTGTCATCAGACTTATTGTACATaGCAGACAAGGGTACCGTTG | + |
|
Preference number: 4 (lower is better) Translates to: VGWIPKLQLRREGHKYCHQTYCT*QTRVPL Trigger: CAACGGTACCCTTGTCTGGCATGTACAATAAGTCTG...ATGACAATATTTATGCCCTTCCCTTCTAAGCTGTAGTTTGGGAATCCAGCCCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| CDS-3UTR GCA 90 bp | CCAAACTACAGCTTAGAAGGGAAGGGCATAAATATTGTCATTAATTGGCTCACAATCCACAGCTGGTCTTaGTCTAGCTTAAAGGTGAGC | + |
|
Preference number: 4 (lower is better) Translates to: PNYSLEGKGINIVINWLTIHSWS*SSLKVS Trigger: GCTCACCTTTAAGCTAGAGCAAGACCAGCTGTGGAT...TGTGAGCCAATTAATGACAATATTTATGCCCTTCCCTTCTAAGCTGTAGTTTGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
||
| 3UTR CAA 72 bp | AACAACCAGAAAGCTTTTGATGATTCCGTCTCAGCATaGCTGGTAGGTCTACTCTCAAACAGACTTAAGAGT | + |
|
Preference number: 4 (lower is better) Translates to: NNQKAFDDSVSA*LVGLLSNRLKS Trigger: ACTCTTAAGTCTGTTTGAGAGTAGACCTACCAGCAATGCTGAGACGGAATCATCAAAAGCTTTCTGGTTGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| CDS GCA 90 bp | GTTGCCTCGCGCGTCGCAGGAGTCCTCCGCCGCTGCCCCTACGGCTaGTTCGGCCTCCACGCAGTTGAGGGGCCGTGCGGGCGCCTCGGT | + |
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Preference number: 5 (lower is better) Translates to: VASRVAGVLRRCPYG*FGLHAVEGPCGRLG Trigger: ACCGAGGCGCCCGCACGGCCCCTCAACTGCGTGGAGGCCGAAGCAGCCGTAGGGGCAGCGGCGGAGGACTCCTGCGACGCGCGAGGCAAC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| CDS GCA 90 bp | GGCCGGCTGCAGGTTGCCTCGCGCGTCGCAGGAGTCCTCCGCCGCTaGCCCTACGGCTGCTTCGGCCTCCACGCAGTTGAGGGGCCGTGC | + |
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Preference number: 5 (lower is better) Translates to: GRLQVASRVAGVLRR*PYGCFGLHAVEGPC Trigger: GCACGGCCCCTCAACTGCGTGGAGGCCGAAGCAGCCGTAGGGGCAGCGGCGGAGGACTCCTGCGACGCGCGAGGCAACCTGCAGCCGGCC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| CDS CCA 90 bp | CCCCCGCACCAGCCCCTAATTTCACACAGGCTGGCCGGAAACAGGTaGAGGTTTCTATGGAGACCCGCCTCCTCCGCTTCCCGGGCCGGC | + |
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Preference number: 5 (lower is better) Translates to: PPHQPLISHRLAGNR*RFLWRPASSASRAG Trigger: GCCGGCCCGGGAAGCGGAGGAGGCGGGTCTCCATAGAAACCTCCACCTGTTTCCGGCCAGCCTGTGTGAAATTAGGGGCTGGTGCGGGGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| CDS-3UTR CAA 90 bp | GGCCTGAATGGTAGCAAGAAGCAAGAGAAAGTTGGCAGATGGGTGAAAAGCCCATCGGCCTCCACGCAGTaGAGGGGCCGTGCGGGCGCC | + |
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Preference number: 5 (lower is better) Translates to: GLNGSKKQEKVGRWVKSPSASTQ*RGRAGA Trigger: GGCGCCCGCACGGCCCCTCAACTGCGTGGAGGCCGA...TGGGCTTTTCACCCATCTGCCAACTTTCTCTTGCTTCTTGCTACCATTCAGGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| CDS-3UTR CAA 90 bp | GGCTTTGGTCCTCTTGAAATGACACCGGCCTGCGTGAGAAGCAGTTTGGCCCTTCAGACAAGGGTACCGTaGGCAGGCGCTCCTGGGCAC | + |
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Preference number: 5 (lower is better) Translates to: GFGPLEMTPACVRSSLALQTRVP*AGAPGH Trigger: GTGCCCAGGAGCGCCTGCCAACGGTACCCTTGTCTG...AAGGGCCAAACTGCTTCTCACGCAGGCCGGTGTCATTTCAAGAGGACCAAAGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| CDS CCA 90 bp | TTGTGTGTGGCAGCCTTGAAGGTCCCTTTAGTGCCGATCCACAGCTaGTCTTGCTCTAGCTTAAAGGTGAGCCTCACTTTCCCGCCAGAC | + |
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Preference number: 5 (lower is better) Translates to: LCVAALKVPLVPIHS*SCSSLKVSLTFPPD Trigger: GTCTGGCGGGAAAGTGAGGCTCACCTTTAAGCTAGAGCAAGACCAGCTGTGGATCGGCACTAAAGGGACCTTCAAGGCTGCCACACACAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153640.3 |
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| CDS GCA 90 bp | GTGGCAGCCTTGAAGGTCCCTTTAGTGCCGATCCACAGCTGGTCTTaGTCTAGCTTAAAGGTGAGCCTCACTTTCCCGCCAGACTTATTG | + |
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Preference number: 5 (lower is better) Translates to: VAALKVPLVPIHSWS*SSLKVSLTFPPDLL Trigger: CAATAAGTCTGGCGGGAAAGTGAGGCTCACCTTTAAGCTAGAGCAAGACCAGCTGTGGATCGGCACTAAAGGGACCTTCAAGGCTGCCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153640.3 |
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| CDS-3UTR CAA 90 bp | GCATACATCTATCTATTCCCTCCCTTCTTGGCTCCTAGCAAAGAAAAGGGCAGGCAGAGGGGCTCCTTCTaGTTTTCTTCAGCCTTTGCA | + |
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Preference number: 5 (lower is better) Translates to: AYIYLFPPFLAPSKEKGRQRGSF*FSSAFA Trigger: TGCAAAGGCTGAAGAAAACAAGAAGGAGCCCCTCTG...CCTGCCCTTTTCTTTGCTAGGAGCCAAGAAGGGAGGGAATAGATAGATGTATGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| CDS-3UTR CAA 90 bp | AACAGCACAAGGATCATCCACCAAGAGACTGTCCCTCCTTTCAGTCAATCAAGGATTTCTCTCAAAGTCTaGTCTTCAGGAACAAGTCCT | + |
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Preference number: 5 (lower is better) Translates to: NSTRIIHQETVPPFSQSRISLKV*SSGTSP Trigger: AGGACTTGTTCCTGAAGACAAGACTTTGAGAGAAAT...CCTTGATTGACTGAAAGGAGGGACAGTCTCTTGGTGGATGATCCTTGTGCTGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| CDS-3UTR CAA 90 bp | CCAAACTACAGCTTAGAAGGGAAGGGCATAAATATTGTCATTAATTGGCTCACAACCTTCACGTCGTGTTaGGTCTTGTTCCAGATTATC | + |
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Preference number: 5 (lower is better) Translates to: PNYSLEGKGINIVINWLTTFTSC*VLFQII Trigger: GATAATCTGGAACAAGACCAAACACGACGTGAAGGT...TGTGAGCCAATTAATGACAATATTTATGCCCTTCCCTTCTAAGCTGTAGTTTGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| CDS CAA 72 bp | GCCGCTGCCCCTACGGCTGCTTCGGCCTCCACGCAGTaGAGGGGCCGTGCGGGCGCCTCGGTGGCCACAGCC | + |
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Preference number: 6 (lower is better) Translates to: AAAPTAASASTQ*RGRAGASVATA Trigger: GGCTGTGGCCACCGAGGCGCCCGCACGGCCCCTCAACTGCGTGGAGGCCGAAGCAGCCGTAGGGGCAGCGGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| CDS TCA 72 bp | CCGCTGCCCCTACGGCTGCTTCGGCCTCCACGCAGTTaGGGGGCCGTGCGGGCGCCTCGGTGGCCACAGCCT | + |
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Preference number: 6 (lower is better) Translates to: PLPLRLLRPPRS*GAVRAPRWPQP Trigger: AGGCTGTGGCCACCGAGGCGCCCGCACGGCCCCTCAACTGCGTGGAGGCCGAAGCAGCCGTAGGGGCAGCGG 75% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| CDS GCA 72 bp | CGCGTCGCAGGAGTCCTCCGCCGCTGCCCCTACGGCTaGTTCGGCCTCCACGCAGTTGAGGGGCCGTGCGGG | + |
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Preference number: 6 (lower is better) Translates to: RVAGVLRRCPYG*FGLHAVEGPCG Trigger: CCCGCACGGCCCCTCAACTGCGTGGAGGCCGAAGCAGCCGTAGGGGCAGCGGCGGAGGACTCCTGCGACGCG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| CDS GCA 72 bp | CAGGTTGCCTCGCGCGTCGCAGGAGTCCTCCGCCGCTaGCCCTACGGCTGCTTCGGCCTCCACGCAGTTGAG | + |
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Preference number: 6 (lower is better) Translates to: QVASRVAGVLRR*PYGCFGLHAVE Trigger: CTCAACTGCGTGGAGGCCGAAGCAGCCGTAGGGGCAGCGGCGGAGGACTCCTGCGACGCGCGAGGCAACCTG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| CDS CCA 72 bp | CAGCCCCTAATTTCACACAGGCTGGCCGGAAACAGGTaGAGGTTTCTATGGAGACCCGCCTCCTCCGCTTCC | + |
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Preference number: 6 (lower is better) Translates to: QPLISHRLAGNR*RFLWRPASSAS Trigger: GGAAGCGGAGGAGGCGGGTCTCCATAGAAACCTCCACCTGTTTCCGGCCAGCCTGTGTGAAATTAGGGGCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033158.6 |
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| CDS CAA 90 bp | TCTTGCTCTAGCTTAAAGGTGAGCCTCACTTTCCCGCCAGACTTATaGTACATGCCAGACAAGGGTACCGTTGGCAGGCGCTCCTGGGCA | + |
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Preference number: 6 (lower is better) Translates to: SCSSLKVSLTFPPDL*YMPDKGTVGRRSWA Trigger: TGCCCAGGAGCGCCTGCCAACGGTACCCTTGTCTGGCATGTACAATAAGTCTGGCGGGAAAGTGAGGCTCACCTTTAAGCTAGAGCAAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033158.6 ENSMUST00000153640.3 |
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| CDS CAA 72 bp | AGCTTAAAGGTGAGCCTCACTTTCCCGCCAGACTTATaGTACATGCCAGACAAGGGTACCGTTGGCAGGCGC | + |
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Preference number: 6 (lower is better) Translates to: SLKVSLTFPPDL*YMPDKGTVGRR Trigger: GCGCCTGCCAACGGTACCCTTGTCTGGCATGTACAATAAGTCTGGCGGGAAAGTGAGGCTCACCTTTAAGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033158.6 ENSMUST00000153640.3 |
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| CDS GCA 72 bp | TTGAAGGTCCCTTTAGTGCCGATCCACAGCTGGTCTTaGTCTAGCTTAAAGGTGAGCCTCACTTTCCCGCCA | + |
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Preference number: 6 (lower is better) Translates to: LKVPLVPIHSWS*SSLKVSLTFPP Trigger: TGGCGGGAAAGTGAGGCTCACCTTTAAGCTAGAGCAAGACCAGCTGTGGATCGGCACTAAAGGGACCTTCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153640.3 |
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| CDS CCA 72 bp | GCAGCCTTGAAGGTCCCTTTAGTGCCGATCCACAGCTaGTCTTGCTCTAGCTTAAAGGTGAGCCTCACTTTC | + |
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Preference number: 6 (lower is better) Translates to: AALKVPLVPIHS*SCSSLKVSLTF Trigger: GAAAGTGAGGCTCACCTTTAAGCTAGAGCAAGACCAGCTGTGGATCGGCACTAAAGGGACCTTCAAGGCTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153640.3 |
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