RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for UBE3A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025326

Ensembl transcript IDs: ENSMUST00000107537.5, ENSMUST00000200758.4, ENSMUST00000201409.4, ENSMUST00000202440.4, ENSMUST00000202945.4, ENSMUST00000207686.2, ENSMUST00000208313.2

Found 139 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCAAGTCAAGGGAATGGCAGTGCCAAACTAAAATTCAGAGTCATTTaGCTGAAGGCTACAACCCCAACCAGTGTGTACTATATTCCAGAT +
Preference number: 1 (lower is better)
Translates to: PSQGNGSAKLKFRVI*LKATTPTSVYYIPD
Trigger: ATCTGGAATATAGTACACACTGGTTGGGGTTGTAGCCTTCAGTCAAATGACTCTGAATTTTAGTTTGGCACTGCCATTCCCTTGACTTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR GCA 90 bp AGGCACAGTAGCTGTACTTTCTGTTATGCTGCAACACTGATCGAGTaGCTTGAAAAATGGTTGATTAAACAAGATGACGGCAACAGAAGG +
Preference number: 1 (lower is better)
Translates to: RHSSCTFCYAATLIE*LEKWLIKQDDGNRR
Trigger: CCTTCTGTTGCCGTCATCTTGTTTAATCAACCATTTTTCAAGGCACTCGATCAGTGTTGCAGCATAACAGAAAGTACAGCTACTGTGCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
3UTR GCA 90 bp ACACAATTAACTATAGACCACGATATGTACACTCAATTTGTTTGCTaGAGCTGCCAAGTTTCCAGAGAAGTTTTGCTGCAGGCTGTGCTT +
Preference number: 1 (lower is better)
Translates to: TQLTIDHDMYTQFVC*SCQVSREVLLQAVL
Trigger: AAGCACAGCCTGCAGCAAAACTTCTCTGGAAACTTGGCAGCTGCAGCAAACAAATTGAGTGTACATATCGTGGTCTATAGTTAATTGTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR GCA 90 bp ATCACACAATTAACTATAGACCACGATATGTACACTCAATTTGTTTaGTGCAGCTGCCAAGTTTCCAGAGAAGTTTTGCTGCAGGCTGTG +
Preference number: 1 (lower is better)
Translates to: ITQLTIDHDMYTQFV*CSCQVSREVLLQAV
Trigger: CACAGCCTGCAGCAAAACTTCTCTGGAAACTTGGCAGCTGCAGCAAACAAATTGAGTGTACATATCGTGGTCTATAGTTAATTGTGTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR CCA 90 bp TGTACTTTCTGTTATGCTGCAACACTGATCGAGTGCCTTGAAAAATaGTTGATTAAACAAGATGACGGCAACAGAAGGGGAGACTTTGGA +
Preference number: 1 (lower is better)
Translates to: CTFCYAATLIECLEK*LIKQDDGNRRGDFG
Trigger: TCCAAAGTCTCCCCTTCTGTTGCCGTCATCTTGTTTAATCAACCATTTTTCAAGGCACTCGATCAGTGTTGCAGCATAACAGAAAGTACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
3UTR GCA 90 bp CTCAATTTGTTTGCTGCAGCTGCCAAGTTTCCAGAGAAGTTTTGCTaGAGGCTGTGCTTTTATGCCATAAGTTTGAAATGTTCTACACTA +
Preference number: 1 (lower is better)
Translates to: LNLFAAAAKFPEKFC*RLCFYAISLKCSTL
Trigger: TAGTGTAGAACATTTCAAACTTATGGCATAAAAGCACAGCCTGCAGCAAAACTTCTCTGGAAACTTGGCAGCTGCAGCAAACAAATTGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR GCA 90 bp ACACTCAATTTGTTTGCTGCAGCTGCCAAGTTTCCAGAGAAGTTTTaGTGCAGGCTGTGCTTTTATGCCATAAGTTTGAAATGTTCTACA +
Preference number: 1 (lower is better)
Translates to: TLNLFAAAAKFPEKF*CRLCFYAISLKCST
Trigger: TGTAGAACATTTCAAACTTATGGCATAAAAGCACAGCCTGCAGCAAAACTTCTCTGGAAACTTGGCAGCTGCAGCAAACAAATTGAGTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR TCA 90 bp ATGTGGACGCAACCTTACCATTTGTCATCCCTTTTCCTGCCTGTATaGCTTTTAGTAAGGTGTATAACCTCTCAAGTTACAGATATTTAT +
Preference number: 1 (lower is better)
Translates to: MWTQPYHLSSLFLPV*LLVRCITSQVTDIY
Trigger: ATAAATATCTGTAACTTGAGAGGTTATACACCTTACTAAAAGTCATACAGGCAGGAAAAGGGATGACAAATGGTAAGGTTGCGTCCACAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR TCA 90 bp GCGAAACAGACAAAAAGGCCACATAATTGTATGACTCCATTAACATaGAATGACCAAAATAGGCAAATTCATAGGCATACGAAGACGAGT +
Preference number: 1 (lower is better)
Translates to: AKQTKRPHNCMTPLT*NDQNRQIHRHTKTS
Trigger: ACTCGTCTTCGTATGCCTATGAATTTGCCTATTTTGGTCATTTCATGTTAATGGAGTCATACAATTATGTGGCCTTTTTGTCTGTTTCGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR-3UTR TCA 90 bp TGCAATAGGCTTGACTATCCTATCATTTGGCCAGATGCACTTTCCCCAGTAAACAGGCACAGACATAGATaGCTACTGTGGTTCACTATC +
Preference number: 2 (lower is better)
Translates to: CNRLDYPIIWPDALSPVNRHRHR*LLWFTI
Trigger: GATAGTGAACCACAGTAGTCATCTATGTCTGTGCCT...GTTTACTGGGGAAAGTGCATCTGGCCAAATGATAGGATAGTCAAGCCTATTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
3UTR CAA 90 bp TCCAAGTCAAGGGAATGGCAGTGCCAAACTAAAATTCAGAGTCATTaGACTGAAGGCTACAACCCCAACCAGTGTGTACTATATTCCAGA +
Preference number: 2 (lower is better)
Translates to: SKSREWQCQTKIQSH*TEGYNPNQCVLYSR
Trigger: TCTGGAATATAGTACACACTGGTTGGGGTTGTAGCCTTCAGTCAAATGACTCTGAATTTTAGTTTGGCACTGCCATTCCCTTGACTTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR-3UTR TCA 90 bp TTTATTGGCTTTGTGAAAATGAAGGACCATGTGCACAGATCTTTAGCAGTCATTAAGGGAACGCACTTCTaGAGGCCTCCTCAACTGTTC +
Preference number: 2 (lower is better)
Translates to: FIGFVKMKDHVHRSLAVIKGTHF*RPPQLF
Trigger: GAACAGTTGAGGAGGCCTTCAGAAGTGCGTTCCCTT...AATGACTGCTAAAGATCTGTGCACATGGTCCTTCATTTTCACAAAGCCAATAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR-3UTR CCA 90 bp ACAATCAGGAGAGTATCCATACAAGGTGTCTATGAGTTGGGATGGAAAAGTGAGGACTATCCTATCATTTaGCCAGATGCACTTTCCCCA +
Preference number: 2 (lower is better)
Translates to: TIRRVSIQGVYELGWKSEDYPII*PDALSP
Trigger: TGGGGAAAGTGCATCTGGCCAAATGATAGGATAGTC...CTCACTTTTCCATCCCAACTCATAGACACCTTGTATGGATACTCTCCTGATTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR CAA 90 bp ACTTTCTGTTATGCTGCAACACTGATCGAGTGCCTTGAAAAATGGTaGATTAAACAAGATGACGGCAACAGAAGGGGAGACTTTGGATTG +
Preference number: 2 (lower is better)
Translates to: TFCYAATLIECLEKW*IKQDDGNRRGDFGL
Trigger: CAATCCAAAGTCTCCCCTTCTGTTGCCGTCATCTTGTTTAATCAACCATTTTTCAAGGCACTCGATCAGTGTTGCAGCATAACAGAAAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
3UTR CAA 90 bp GATCACACAATTAACTATAGACCACGATATGTACACTCAATTTGTTaGCTGCAGCTGCCAAGTTTCCAGAGAAGTTTTGCTGCAGGCTGT +
Preference number: 2 (lower is better)
Translates to: DHTINYRPRYVHSIC*LQLPSFQRSFAAGC
Trigger: ACAGCCTGCAGCAAAACTTCTCTGGAAACTTGGCAGCTGCAGCAAACAAATTGAGTGTACATATCGTGGTCTATAGTTAATTGTGTGATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR-3UTR TCA 90 bp GAACAGGAAGTTCAGAGGAGTACTTCTAAGTACAATCAGGAGAGTATCCATACATGCCACATGTTAATGTaGACAAGTTCTCTGAAGGCT +
Preference number: 2 (lower is better)
Translates to: EQEVQRSTSKYNQESIHTCHMLM*TSSLKA
Trigger: AGCCTTCAGAGAACTTGTTCACATTAACATGTGGCA...TGTATGGATACTCTCCTGATTGTACTTAGAAGTACTCCTCTGAACTTCCTGTTC
41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR-3UTR GCA 90 bp ACAATCAGGAGAGTATCCATACAAGGTGTCTATGAGTTGGGATGGAAAAGTGAGTTTTGCTGCAGGCTGTaGTTTTATGCCATAAGTTTG +
Preference number: 2 (lower is better)
Translates to: TIRRVSIQGVYELGWKSEFCCRL*FYAISL
Trigger: CAAACTTATGGCATAAAAGCACAGCCTGCAGCAAAA...CTCACTTTTCCATCCCAACTCATAGACACCTTGTATGGATACTCTCCTGATTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR-3UTR GCA 90 bp ACAATCAGGAGAGTATCCATACAAGGTGTCTATGAGTTGGGATGGAAAAGTGAGTTTCCAGAGAAGTTTTaGTGCAGGCTGTGCTTTTAT +
Preference number: 2 (lower is better)
Translates to: TIRRVSIQGVYELGWKSEFPEKF*CRLCFY
Trigger: ATAAAAGCACAGCCTGCAGCAAAACTTCTCTGGAAA...CTCACTTTTCCATCCCAACTCATAGACACCTTGTATGGATACTCTCCTGATTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR-3UTR TCA 90 bp TTTATTGGCTTTGTGAAAATGAAGGACCATGTGCACAGATCTTTAGCAGTCATTAGGCACAGACATAGATaGCTACTGTGGTTCACTATC +
Preference number: 2 (lower is better)
Translates to: FIGFVKMKDHVHRSLAVIRHRHR*LLWFTI
Trigger: GATAGTGAACCACAGTAGTCATCTATGTCTGTGCCT...AATGACTGCTAAAGATCTGTGCACATGGTCCTTCATTTTCACAAAGCCAATAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR-3UTR GCA 90 bp ACAATCAGGAGAGTATCCATACAAGGTGTCTATGAGTTGGGATGGAAAAGTGAGCAGGCTGTGCTTTTATaGCATAAGTTTGAAATGTTC +
Preference number: 2 (lower is better)
Translates to: TIRRVSIQGVYELGWKSEQAVLL*HKFEMF
Trigger: GAACATTTCAAACTTATGGCATAAAAGCACAGCCTG...CTCACTTTTCCATCCCAACTCATAGACACCTTGTATGGATACTCTCCTGATTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR-3UTR TCA 90 bp GCCAGATGCACTTTCCCCAGTAAACTTAAACAACAAAAACAACAACAACAACAAAAGAGGATTGGCTACTaGAACAGTTCATTGCAAGAC +
Preference number: 2 (lower is better)
Translates to: ARCTFPSKLKQQKQQQQQKRIGY*NSSLQD
Trigger: GTCTTGCAATGAACTGTTTCAGTAGCCAATCCTCTT...TTGTTGTTGTTGTTGTTTTTGTTGTTTAAGTTTACTGGGGAAAGTGCATCTGGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
3UTR-3UTR TCA 90 bp TTTATTGGCTTTGTGAAAATGAAGGACCATGTGCACAGATCTTTAGCAGTCATTGTCAGGAAGATAACCTaGGTAAATCAAAGGATTGGG +
Preference number: 2 (lower is better)
Translates to: FIGFVKMKDHVHRSLAVIVRKIT*VNQRIG
Trigger: CCCAATCCTTTGATTTACTCAGGTTATCTTCCTGAC...AATGACTGCTAAAGATCTGTGCACATGGTCCTTCATTTTCACAAAGCCAATAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR-3UTR TCA 90 bp TTACCTTTAAAACTGAGCAGCAATATAATGGTTGCCACTTTTGTGACTGGTGTTGTGCCATCTTACACATaGCCAAAAATAAGGCAAAGG +
Preference number: 2 (lower is better)
Translates to: LPLKLSSNIMVATFVTGVVPSYT*PKIRQR
Trigger: CCTTTGCCTTATTTTTGGTCATGTGTAAGATGGCAC...AACACCAGTCACAAAAGTGGCAACCATTATATTGCTGCTCAGTTTTAAAGGTAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000202945.4
3UTR-3UTR GCA 90 bp TTTGGGGGATATACAATTTATTTCTCAGGAGTACTAGTTCCATTCATTTCCAGGCTGTACTTTCTGTTATaGTGCAACACTGATCGAGTG +
Preference number: 2 (lower is better)
Translates to: FGGYTIYFSGVLVPFISRLYFLL*CNTDRV
Trigger: CACTCGATCAGTGTTGCAGCATAACAGAAAGTACAG...CCTGGAAATGAATGGAACTAGTACTCCTGAGAAATAAATTGTATATCCCCCAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
3UTR-3UTR GCA 90 bp TTTATTGGCTTTGTGAAAATGAAGGACCATGTGCACAGATCTTTAGCAGTCATTCTGTACTTTCTGTTATaGTGCAACACTGATCGAGTG +
Preference number: 2 (lower is better)
Translates to: FIGFVKMKDHVHRSLAVILYFLL*CNTDRV
Trigger: CACTCGATCAGTGTTGCAGCATAACAGAAAGTACAG...AATGACTGCTAAAGATCTGTGCACATGGTCCTTCATTTTCACAAAGCCAATAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR-3UTR GCA 90 bp TTTATTGGCTTTGTGAAAATGAAGGACCATGTGCACAGATCTTTAGCAGTCATTACTCAATTTGTTTGCTaGAGCTGCCAAGTTTCCAGA +
Preference number: 2 (lower is better)
Translates to: FIGFVKMKDHVHRSLAVITQFVC*SCQVSR
Trigger: TCTGGAAACTTGGCAGCTGCAGCAAACAAATTGAGT...AATGACTGCTAAAGATCTGTGCACATGGTCCTTCATTTTCACAAAGCCAATAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR-3UTR CCA 90 bp GGACAATGGGACAAAGTTCAAGAATCCAAAATTAGCCATATTTATGGTCATTTGAGTTGCCATGACTGCTaGAAGAGTATGAGTGGCATA +
Preference number: 2 (lower is better)
Translates to: GQWDKVQESKISHIYGHLSCHDC*KSMSGI
Trigger: TATGCCACTCATACTCTTCCAGCAGTCATGGCAACT...CAAATGACCATAAATATGGCTAATTTTGGATTCTTGAACTTTGTCCCATTGTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR CAA 90 bp ACAAGAAAAAGATGTACACTCTTGCCACTTCAATTTAATATCATATaGGACGTGCTAGCCAGGGCACTTAGGCAGGGAAATCAAATAAAA +
Preference number: 2 (lower is better)
Translates to: TRKRCTLLPLQFNII*DVLARALRQGNQIK
Trigger: TTTTATTTGATTTCCCTGCCTAAGTGCCCTGGCTAGCACGTCCAATATGATATTAAATTGAAGTGGCAAGAGTGTACATCTTTTTCTTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR-3UTR TCA 90 bp GGACAATGGGACAAAGTTCAAGAATCCAAAATTAGCCATATTTATGGTCATTTGAAGAGGATTGGCTACTaGAACAGTTCATTGCAAGAC +
Preference number: 2 (lower is better)
Translates to: GQWDKVQESKISHIYGHLKRIGY*NSSLQD
Trigger: GTCTTGCAATGAACTGTTTCAGTAGCCAATCCTCTT...CAAATGACCATAAATATGGCTAATTTTGGATTCTTGAACTTTGTCCCATTGTCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR-3UTR TCA 90 bp TTTATTGGCTTTGTGAAAATGAAGGACCATGTGCACAGATCTTTAGCAGTCATTGGGTCTGATATGATATaGGATATGAGACCCACAAAA +
Preference number: 2 (lower is better)
Translates to: FIGFVKMKDHVHRSLAVIGSDMI*DMRPTK
Trigger: TTTTGTGGGTCTCATATCTCATATCATATCAGACCC...AATGACTGCTAAAGATCTGTGCACATGGTCCTTCATTTTCACAAAGCCAATAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR-3UTR TCA 90 bp CAGCATATCAATACAATGACAATATTCAGCCACAAAAGAAACAGTACCAGTACAAAATTCAGAGTCATTTaGCTGAAGGCTACAACCCCA +
Preference number: 2 (lower is better)
Translates to: QHINTMTIFSHKRNSTSTKFRVI*LKATTP
Trigger: TGGGGTTGTAGCCTTCAGTCAAATGACTCTGAATTT...TGTACTGGTACTGTTTCTTTTGTGGCTGAATATTGTCATTGTATTGATATGCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR-3UTR TCA 90 bp CTGAGCAGCAATATAATGGTTGCCACTTTTGTGACTGGTGTTAGAAGCAAATATAGAAATAAGGGCATTTaGCTAGAGAACGATGTTAGT +
Preference number: 2 (lower is better)
Translates to: LSSNIMVATFVTGVRSKYRNKGI*LENDVS
Trigger: ACTAACATCGTTCTCTAGTCAAATGCCCTTATTTCT...ATATTTGCTTCTAACACCAGTCACAAAAGTGGCAACCATTATATTGCTGCTCAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202945.4
3UTR-3UTR TCA 90 bp CTGAGCAGCAATATAATGGTTGCCACTTTTGTGACTGGTGTTAGAAGCAAATATGACTACTCTGCATTTTaGTCAGTCACATTAGAAGAT +
Preference number: 2 (lower is better)
Translates to: LSSNIMVATFVTGVRSKYDYSAF*SVTLED
Trigger: ATCTTCTAATGTGACTGATCAAAATGCAGAGTAGTC...ATATTTGCTTCTAACACCAGTCACAAAAGTGGCAACCATTATATTGCTGCTCAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202945.4
3UTR-3UTR GCA 90 bp CAGCATATCAATACAATGACAATATTCAGCCACAAAAGAAACAGTACCAGTACATTTGTTTGCTGCAGCTaGCAAGTTTCCAGAGAAGTT +
Preference number: 2 (lower is better)
Translates to: QHINTMTIFSHKRNSTSTFVCCS*QVSREV
Trigger: AACTTCTCTGGAAACTTGGCAGCTGCAGCAAACAAA...TGTACTGGTACTGTTTCTTTTGTGGCTGAATATTGTCATTGTATTGATATGCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR-3UTR GCA 90 bp GAACAGGAAGTTCAGAGGAGTACTTCTAAGTACAATCAGGAGAGTATCCATACACTTTACATAGTGAAATaGAGTACATACATGCACTCA +
Preference number: 2 (lower is better)
Translates to: EQEVQRSTSKYNQESIHTLYIVK*STYMHS
Trigger: TGAGTGCATGTATGTACTGCATTTCACTATGTAAAG...TGTATGGATACTCTCCTGATTGTACTTAGAAGTACTCCTCTGAACTTCCTGTTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR-3UTR CCA 90 bp GGACAATGGGACAAAGTTCAAGAATCCAAAATTAGCCATATTTATGGTCATTTGAAGGTGTCTATGAGTTaGGATGGAAAAGTGAGCCTT +
Preference number: 2 (lower is better)
Translates to: GQWDKVQESKISHIYGHLKVSMS*DGKVSL
Trigger: AAGGCTCACTTTTCCATCCCAACTCATAGACACCTT...CAAATGACCATAAATATGGCTAATTTTGGATTCTTGAACTTTGTCCCATTGTCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR-3UTR CCA 90 bp TTACCTTTAAAACTGAGCAGCAATATAATGGTTGCCACTTTTGTGACTGGTGTTAGTCACATTAGAAGATaGGGGGAAAGATCTTTCAGA +
Preference number: 2 (lower is better)
Translates to: LPLKLSSNIMVATFVTGVSHIRR*GERSFR
Trigger: TCTGAAAGATCTTTCCCCCCATCTTCTAATGTGACT...AACACCAGTCACAAAAGTGGCAACCATTATATTGCTGCTCAGTTTTAAAGGTAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000202945.4
3UTR-3UTR GCA 90 bp GGACAATGGGACAAAGTTCAAGAATCCAAAATTAGCCATATTTATGGTCATTTGTATCATTTGGCCAGATaGACTTTCCCCAGTAAACTT +
Preference number: 2 (lower is better)
Translates to: GQWDKVQESKISHIYGHLYHLAR*TFPSKL
Trigger: AAGTTTACTGGGGAAAGTGCATCTGGCCAAATGATA...CAAATGACCATAAATATGGCTAATTTTGGATTCTTGAACTTTGTCCCATTGTCC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR-3UTR CCA 90 bp CAAGGTAGTTTCCACTGTGAATTTACTCAGATTCCATACAAAAGAGAAGATGCTTACCTTATCACAATATaGAACGCACTGTGTTCTCTT +
Preference number: 2 (lower is better)
Translates to: QGSFHCEFTQIPYKREDAYLITI*NALCSL
Trigger: AAGAGAACACAGTGCGTTCCATATTGTGATAAGGTA...AGCATCTTCTCTTTTGTATGGAATCTGAGTAAATTCACAGTGGAAACTACCTTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR-3UTR GCA 90 bp TTACCTTTAAAACTGAGCAGCAATATAATGGTTGCCACTTTTGTGACTGGTGTTCCAAAAAGACTACTCTaGATTTTGATCAGTCACATT +
Preference number: 2 (lower is better)
Translates to: LPLKLSSNIMVATFVTGVPKRLL*ILISHI
Trigger: AATGTGACTGATCAAAATGCAGAGTAGTCTTTTTGG...AACACCAGTCACAAAAGTGGCAACCATTATATTGCTGCTCAGTTTTAAAGGTAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000202945.4
3UTR-3UTR CCA 90 bp CCAGATGCACTTTCCCCAGTAAACTTAAACAACAAAAACAACAACAACAACAAATACATGTTCTACAAATaGTGGCAATGTTTTCCTTGC +
Preference number: 2 (lower is better)
Translates to: PDALSPVNLNNKNNNNNKYMFYK*WQCFPC
Trigger: GCAAGGAAAACATTGCCACCATTTGTAGAACATGTA...TTTGTTGTTGTTGTTGTTTTTGTTGTTTAAGTTTACTGGGGAAAGTGCATCTGG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
3UTR-3UTR CCA 90 bp CAGCATATCAATACAATGACAATATTCAGCCACAAAAGAAACAGTACCAGTACATACATGTTCTACAAATaGTGGCAATGTTTTCCTTGC +
Preference number: 2 (lower is better)
Translates to: QHINTMTIFSHKRNSTSTYMFYK*WQCFPC
Trigger: GCAAGGAAAACATTGCCACCATTTGTAGAACATGTA...TGTACTGGTACTGTTTCTTTTGTGGCTGAATATTGTCATTGTATTGATATGCTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR-3UTR CCA 90 bp TTTGGGGGATATACAATTTATTTCTCAGGAGTACTAGTTCCATTCATTTCCAGGGAGTGCCTTGAAAAATaGTTGATTAAACAAGATGAC +
Preference number: 2 (lower is better)
Translates to: FGGYTIYFSGVLVPFISRECLEK*LIKQDD
Trigger: GTCATCTTGTTTAATCAACCATTTTTCAAGGCACTC...CCTGGAAATGAATGGAACTAGTACTCCTGAGAAATAAATTGTATATCCCCCAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
3UTR GCA 72 bp GACCACGATATGTACACTCAATTTGTTTGCTGCAGCTaGCAAGTTTCCAGAGAAGTTTTGCTGCAGGCTGTG +
Preference number: 3 (lower is better)
Translates to: DHDMYTQFVCCS*QVSREVLLQAV
Trigger: CACAGCCTGCAGCAAAACTTCTCTGGAAACTTGGCAGCTGCAGCAAACAAATTGAGTGTACATATCGTGGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR GCA 72 bp AATAGGCAAATTCATAGGCATACGAAGACGAGTAGTTaGCAGGGGTTGGAGTTAAGAACAGGCAGTCACTCT +
Preference number: 3 (lower is better)
Translates to: NRQIHRHTKTSS*QGLELRTGSHS
Trigger: AGAGTGACTGCCTGTTCTTAACTCCAACCCCTGGCAACTACTCGTCTTCGTATGCCTATGAATTTGCCTATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR CCA 72 bp CAATCAGGAGAGTATCCATACAAGGTGTCTATGAGTTaGGATGGAAAAGTGAGCCTTTCAGGAAGCTGTAGC +
Preference number: 3 (lower is better)
Translates to: QSGEYPYKVSMS*DGKVSLSGSCS
Trigger: GCTACAGCTTCCTGAAAGGCTCACTTTTCCATCCCAACTCATAGACACCTTGTATGGATACTCTCCTGATTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR-3UTR CAA 90 bp AGCTGTAGCCCAACTCTGCAAGGCTCTCAAGGGTTAAAAACAAGACTTCTTTACGTACACTCAATTTGTTaGCTGCAGCTGCCAAGTTTC +
Preference number: 3 (lower is better)
Translates to: SCSPTLQGSQGLKTRLLYVHSIC*LQLPSF
Trigger: GAAACTTGGCAGCTGCAGCAAACAAATTGAGTGTAC...GTAAAGAAGTCTTGTTTTTAACCCTTGAGAGCCTTGCAGAGTTGGGCTACAGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR TCA 72 bp GGGAATGGCAGTGCCAAACTAAAATTCAGAGTCATTTaGCTGAAGGCTACAACCCCAACCAGTGTGTACTAT +
Preference number: 3 (lower is better)
Translates to: GNGSAKLKFRVI*LKATTPTSVYY
Trigger: ATAGTACACACTGGTTGGGGTTGTAGCCTTCAGTCAAATGACTCTGAATTTTAGTTTGGCACTGCCATTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR GCA 72 bp TTTGCTGCAGCTGCCAAGTTTCCAGAGAAGTTTTGCTaGAGGCTGTGCTTTTATGCCATAAGTTTGAAATGT +
Preference number: 3 (lower is better)
Translates to: FAAAAKFPEKFC*RLCFYAISLKC
Trigger: ACATTTCAAACTTATGGCATAAAAGCACAGCCTGCAGCAAAACTTCTCTGGAAACTTGGCAGCTGCAGCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR GCA 72 bp TTGTTTGCTGCAGCTGCCAAGTTTCCAGAGAAGTTTTaGTGCAGGCTGTGCTTTTATGCCATAAGTTTGAAA +
Preference number: 3 (lower is better)
Translates to: LFAAAAKFPEKF*CRLCFYAISLK
Trigger: TTTCAAACTTATGGCATAAAAGCACAGCCTGCAGCAAAACTTCTCTGGAAACTTGGCAGCTGCAGCAAACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR GCA 72 bp ACTATAGACCACGATATGTACACTCAATTTGTTTGCTaGAGCTGCCAAGTTTCCAGAGAAGTTTTGCTGCAG +
Preference number: 3 (lower is better)
Translates to: TIDHDMYTQFVC*SCQVSREVLLQ
Trigger: CTGCAGCAAAACTTCTCTGGAAACTTGGCAGCTGCAGCAAACAAATTGAGTGTACATATCGTGGTCTATAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR GCA 72 bp GTTCTCAGGATGTCTTCCAAGATGTTATCTACCAGCTaGATGGTAATTTCACTGAAACCACACAACCAGAGA +
Preference number: 3 (lower is better)
Translates to: VLRMSSKMLSTS*MVISLKPHNQR
Trigger: TCTCTGGTTGTGTGGTTTCAGTGAAATTACCATGCAGCTGGTAGATAACATCTTGGAAGACATCCTGAGAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR CCA 72 bp TGTTATGCTGCAACACTGATCGAGTGCCTTGAAAAATaGTTGATTAAACAAGATGACGGCAACAGAAGGGGA +
Preference number: 3 (lower is better)
Translates to: CYAATLIECLEK*LIKQDDGNRRG
Trigger: TCCCCTTCTGTTGCCGTCATCTTGTTTAATCAACCATTTTTCAAGGCACTCGATCAGTGTTGCAGCATAACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
3UTR TCA 72 bp AGGATGATGTCCTGGAAACACGGGTCTGATATGATATaGGATATGAGACCCACAAAATATGAGGCAAGAGAA +
Preference number: 3 (lower is better)
Translates to: RMMSWKHGSDMI*DMRPTKYEARE
Trigger: TTCTCTTGCCTCATATTTTGTGGGTCTCATATCTCATATCATATCAGACCCGTGTTTCCAGGACATCATCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR TCA 72 bp CCACAAAAGAAACAGTACCAGTACATGCTACAACATTaGTGCAGTTTGAACTCATTGCTTTGTGGAAGGTGG +
Preference number: 3 (lower is better)
Translates to: PQKKQYQYMLQH*CSLNSLLCGRW
Trigger: CCACCTTCCACAAAGCAATGAGTTCAAACTGCATCAATGTTGTAGCATGTACTGGTACTGTTTCTTTTGTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR GCA 72 bp AGCTGTACTTTCTGTTATGCTGCAACACTGATCGAGTaGCTTGAAAAATGGTTGATTAAACAAGATGACGGC +
Preference number: 3 (lower is better)
Translates to: SCTFCYAATLIE*LEKWLIKQDDG
Trigger: GCCGTCATCTTGTTTAATCAACCATTTTTCAAGGCACTCGATCAGTGTTGCAGCATAACAGAAAGTACAGCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
3UTR-3UTR CAA 90 bp TTTATTGGCTTTGTGAAAATGAAGGACCATGTGCACAGATCTTTAGCAGTCATTGGCCAGGAAACAACTTaGTGGAGTTGCTCTTTCCTT +
Preference number: 3 (lower is better)
Translates to: FIGFVKMKDHVHRSLAVIGQETT*WSCSFL
Trigger: AAGGAAAGAGCAACTCCACAAAGTTGTTTCCTGGCC...AATGACTGCTAAAGATCTGTGCACATGGTCCTTCATTTTCACAAAGCCAATAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR-3UTR CAA 90 bp CAAGGTAGTTTCCACTGTGAATTTACTCAGATTCCATACAAAAGAGAAGATGCTTCCCCTTCCAATGATTaGAAAGCTACCATTATCCCC +
Preference number: 3 (lower is better)
Translates to: QGSFHCEFTQIPYKREDASPSND*KATIIP
Trigger: GGGGATAATGGTAGCTTTCAAATCATTGGAAGGGGA...AGCATCTTCTCTTTTGTATGGAATCTGAGTAAATTCACAGTGGAAACTACCTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR GCA 72 bp TTAACTATAGACCACGATATGTACACTCAATTTGTTTaGTGCAGCTGCCAAGTTTCCAGAGAAGTTTTGCTG +
Preference number: 3 (lower is better)
Translates to: LTIDHDMYTQFV*CSCQVSREVLL
Trigger: CAGCAAAACTTCTCTGGAAACTTGGCAGCTGCAGCAAACAAATTGAGTGTACATATCGTGGTCTATAGTTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR GCA 72 bp CACCAGAAGACAGGATGTAGAGTTACAAAACTGTCTTaGTTTCAACCATCTAGTCTTTTCCAACTTACTGTC +
Preference number: 3 (lower is better)
Translates to: HQKTGCRVTKLS*FQPSSLFQLTV
Trigger: GACAGTAAGTTGGAAAAGACTAGATGGTTGAAAGCAAGACAGTTTTGTAACTCTACATCCTGTCTTCTGGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR CCA 72 bp AACTTTGTGGAGTTGCTCTTTCCTTCCATGTTTATGTaGAGTCTAGGCAGAGTCTTCAGGTCAAGTTTTATA +
Preference number: 3 (lower is better)
Translates to: NFVELLFPSMFM*SLGRVFRSSFI
Trigger: TATAAAACTTGACCTGAAGACTCTGCCTAGACTCCACATAAACATGGAAGGAAAGAGCAACTCCACAAAGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR-3UTR CAA 90 bp GAACAGGAAGTTCAGAGGAGTACTTCTAAGTACAATCAGGAGAGTATCCATACAACAGAAGGGGAGACTTaGGATTGTCTATTAAAATCT +
Preference number: 3 (lower is better)
Translates to: EQEVQRSTSKYNQESIHTTEGET*DCLLKS
Trigger: AGATTTTAATAGACAATCCAAAGTCTCCCCTTCTGT...TGTATGGATACTCTCCTGATTGTACTTAGAAGTACTCCTCTGAACTTCCTGTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR-3UTR CAA 90 bp CAGCATATCAATACAATGACAATATTCAGCCACAAAAGAAACAGTACCAGTACAGTTTCCAGAGAAGTTTaGCTGCAGGCTGTGCTTTTA +
Preference number: 3 (lower is better)
Translates to: QHINTMTIFSHKRNSTSTVSREV*LQAVLL
Trigger: TAAAAGCACAGCCTGCAGCAAAACTTCTCTGGAAAC...TGTACTGGTACTGTTTCTTTTGTGGCTGAATATTGTCATTGTATTGATATGCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR-3UTR CAA 90 bp CAAGGTAGTTTCCACTGTGAATTTACTCAGATTCCATACAAAAGAGAAGATGCTATATGTACACTCAATTaGTTTGCTGCAGCTGCCAAG +
Preference number: 3 (lower is better)
Translates to: QGSFHCEFTQIPYKREDAICTLN*FAAAAK
Trigger: CTTGGCAGCTGCAGCAAACAAATTGAGTGTACATAT...AGCATCTTCTCTTTTGTATGGAATCTGAGTAAATTCACAGTGGAAACTACCTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR CCA 72 bp AGCAGCATAGAAAATGGTTTATGTAGCATAGACAAGTaGGGTAATTCCAGGAATGCAAGGTTCTTTCAATAC +
Preference number: 3 (lower is better)
Translates to: SSIENGLCSIDK*GNSRNARFFQY
Trigger: GTATTGAAAGAACCTTGCATTCCTGGAATTACCCCACTTGTCTATGCTACATAAACCATTTTCTATGCTGCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR-3UTR CAA 90 bp AGCAGCAATATAATGGTTGCCACTTTTGTGACTGGTGTTAGAAGCAAATATGAATTTGAGCTTACTTGTTaGGTAACCAGTACCTACAGA +
Preference number: 3 (lower is better)
Translates to: SSNIMVATFVTGVRSKYEFELTC*VTSTYR
Trigger: TCTGTAGGTACTGGTTACCAAACAAGTAAGCTCAAA...TTCATATTTGCTTCTAACACCAGTCACAAAAGTGGCAACCATTATATTGCTGCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202945.4
3UTR CCA 72 bp AGGCTCTCAAGGGTTAAAAACAAGACTTCTTTACTGTaGCAAATGGAGACTACTAGTATTATTGCAAGTACA +
Preference number: 3 (lower is better)
Translates to: RLSRVKNKTSLL*QMETTSIIAST
Trigger: TGTACTTGCAATAATACTAGTAGTCTCCATTTGCCACAGTAAAGAAGTCTTGTTTTTAACCCTTGAGAGCCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR-3UTR CAA 90 bp TTTGGGGGATATACAATTTATTTCTCAGGAGTACTAGTTCCATTCATTTCCAGGCATATACTAAGAGGATaGGCTACTGAAACAGTTCAT +
Preference number: 3 (lower is better)
Translates to: FGGYTIYFSGVLVPFISRHILRG*ATETVH
Trigger: ATGAACTGTTTCAGTAGCCAATCCTCTTAGTATATG...CCTGGAAATGAATGGAACTAGTACTCCTGAGAAATAAATTGTATATCCCCCAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
3UTR-3UTR CAA 90 bp TTTATTGGCTTTGTGAAAATGAAGGACCATGTGCACAGATCTTTAGCAGTCATTCATATACTAAGAGGATaGGCTACTGAAACAGTTCAT +
Preference number: 3 (lower is better)
Translates to: FIGFVKMKDHVHRSLAVIHILRG*ATETVH
Trigger: ATGAACTGTTTCAGTAGCCAATCCTCTTAGTATATG...AATGACTGCTAAAGATCTGTGCACATGGTCCTTCATTTTCACAAAGCCAATAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR-3UTR CAA 90 bp GGACAATGGGACAAAGTTCAAGAATCCAAAATTAGCCATATTTATGGTCATTTGAACAACTTTGTGGAGTaGCTCTTTCCTTCCATGTTT +
Preference number: 3 (lower is better)
Translates to: GQWDKVQESKISHIYGHLNNFVE*LFPSMF
Trigger: AAACATGGAAGGAAAGAGCAACTCCACAAAGTTGTT...CAAATGACCATAAATATGGCTAATTTTGGATTCTTGAACTTTGTCCCATTGTCC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR-3UTR CAA 90 bp AGCAGCAATATAATGGTTGCCACTTTTGTGACTGGTGTTAGAAGCAAATATGAAAGACTACTCTGCATTTaGATCAGTCACATTAGAAGA +
Preference number: 3 (lower is better)
Translates to: SSNIMVATFVTGVRSKYERLLCI*ISHIRR
Trigger: TCTTCTAATGTGACTGATCAAAATGCAGAGTAGTCT...TTCATATTTGCTTCTAACACCAGTCACAAAAGTGGCAACCATTATATTGCTGCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202945.4
3UTR TCA 72 bp ATATTTACAGAGAACAGCATCTGGAGGATTCCTCTATaGAAATTTGAGAGACTAGTCAGTAATAACAGAACG +
Preference number: 3 (lower is better)
Translates to: IFTENSIWRIPL*KFERLVSNNRT
Trigger: CGTTCTGTTATTACTGACTAGTCTCTCAAATTTTCATAGAGGAATCCTCCAGATGCTGTTCTCTGTAAATAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR TCA 72 bp ACAAAAAGGCCACATAATTGTATGACTCCATTAACATaGAATGACCAAAATAGGCAAATTCATAGGCATACG +
Preference number: 3 (lower is better)
Translates to: TKRPHNCMTPLT*NDQNRQIHRHT
Trigger: CGTATGCCTATGAATTTGCCTATTTTGGTCATTTCATGTTAATGGAGTCATACAATTATGTGGCCTTTTTGT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR TCA 72 bp ATAGTAGCATATTACAGAAGTAGAAATAAGGGCATTTaGCTAGAGAACGATGTTAGTGGTAATACTGTCCTA +
Preference number: 3 (lower is better)
Translates to: IVAYYRSRNKGI*LENDVSGNTVL
Trigger: TAGGACAGTATTACCACTAACATCGTTCTCTAGTCAAATGCCCTTATTTCTACTTCTGTAATATGCTACTAT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202945.4
CDS-3UTR TCA 90 bp TGCAATAGGCTTGACTATCCTATCATTTGGCCAGATGCACTTTCCCCAGTAAACGTTCTCAAGGTAAGCTaGGCTTGCTCCTTTCTTGGA +
Preference number: 4 (lower is better)
Translates to: CNRLDYPIIWPDALSPVNVLKVS*ACSFLG
Trigger: TCCAAGAAAGGAGCAAGCTCAGCTTACCTTGAGAAC...GTTTACTGGGGAAAGTGCATCTGGCCAAATGATAGGATAGTCAAGCCTATTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
CDS-3UTR CCA 90 bp TGCAATAGGCTTGACTATCCTATCATTTGGCCAGATGCACTTTCCCCAGTAAACAGCTTGCTCCTTTCTTaGAGGGATGAGGATCACAGA +
Preference number: 4 (lower is better)
Translates to: CNRLDYPIIWPDALSPVNSLLLS*RDEDHR
Trigger: TCTGTGATCCTCATCCCTCCAAGAAAGGAGCAAGCT...GTTTACTGGGGAAAGTGCATCTGGCCAAATGATAGGATAGTCAAGCCTATTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
3UTR CAA 72 bp TATGCTGCAACACTGATCGAGTGCCTTGAAAAATGGTaGATTAAACAAGATGACGGCAACAGAAGGGGAGAC +
Preference number: 4 (lower is better)
Translates to: YAATLIECLEKW*IKQDDGNRRGD
Trigger: GTCTCCCCTTCTGTTGCCGTCATCTTGTTTAATCAACCATTTTTCAAGGCACTCGATCAGTGTTGCAGCATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
3UTR CAA 72 bp GTAAACATGGAAAGGCCAGGAAACAACTTTGTGGAGTaGCTCTTTCCTTCCATGTTTATGTGGAGTCTAGGC +
Preference number: 4 (lower is better)
Translates to: VNMERPGNNFVE*LFPSMFMWSLG
Trigger: GCCTAGACTCCACATAAACATGGAAGGAAAGAGCAACTCCACAAAGTTGTTTCCTGGCCTTTCCATGTTTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR CAA 72 bp AGGGAATGGCAGTGCCAAACTAAAATTCAGAGTCATTaGACTGAAGGCTACAACCCCAACCAGTGTGTACTA +
Preference number: 4 (lower is better)
Translates to: REWQCQTKIQSH*TEGYNPNQCVL
Trigger: TAGTACACACTGGTTGGGGTTGTAGCCTTCAGTCAAATGACTCTGAATTTTAGTTTGGCACTGCCATTCCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR CAA 72 bp AGATGTACACTCTTGCCACTTCAATTTAATATCATATaGGACGTGCTAGCCAGGGCACTTAGGCAGGGAAAT +
Preference number: 4 (lower is better)
Translates to: RCTLLPLQFNII*DVLARALRQGN
Trigger: ATTTCCCTGCCTAAGTGCCCTGGCTAGCACGTCCAATATGATATTAAATTGAAGTGGCAAGAGTGTACATCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
CDS-3UTR TCA 90 bp TGCAATAGGCTTGACTATCCTATCATTTGGCCAGATGCACTTTCCCCAGTAAACTCATCTGTAAACGAATaGACAATTTCCCAGAACTCC +
Preference number: 4 (lower is better)
Translates to: CNRLDYPIIWPDALSPVNSSVNE*TISQNS
Trigger: GGAGTTCTGGGAAATTGTTCATTCGTTTACAGATGA...GTTTACTGGGGAAAGTGCATCTGGCCAAATGATAGGATAGTCAAGCCTATTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
CDS-3UTR TCA 90 bp CAAGGTAGTTTCCACTGTGAATTTACTCAGATTCCATACAAAAGAGAAGATGCTCTGGGATTCTCCTGGTaGTCTTTTACAAGCTGTGGC +
Preference number: 4 (lower is better)
Translates to: QGSFHCEFTQIPYKREDALGFSW*SFTSCG
Trigger: GCCACAGCTTGTAAAAGATCACCAGGAGAATCCCAG...AGCATCTTCTCTTTTGTATGGAATCTGAGTAAATTCACAGTGGAAACTACCTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
CDS-3UTR GCA 90 bp TGCAATAGGCTTGACTATCCTATCATTTGGCCAGATGCACTTTCCCCAGTAAACGGCTTTAATAGCTGCTaGATTGTTATCCATACGAAG +
Preference number: 4 (lower is better)
Translates to: CNRLDYPIIWPDALSPVNGFNSC*IVIHTK
Trigger: CTTCGTATGGATAACAATGCAGCAGCTATTAAAGCC...GTTTACTGGGGAAAGTGCATCTGGCCAAATGATAGGATAGTCAAGCCTATTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
CDS-3UTR GCA 90 bp AGCTGTAGCCCAACTCTGCAAGGCTCTCAAGGGTTAAAAACAAGACTTCTTTACAAAGCTCAGAACCAGTaGCTCAGCACTAGAAAATAT +
Preference number: 4 (lower is better)
Translates to: SCSPTLQGSQGLKTRLLYKAQNQ*LSTRKY
Trigger: ATATTTTCTAGTGCTGAGGCACTGGTTCTGAGCTTT...GTAAAGAAGTCTTGTTTTTAACCCTTGAGAGCCTTGCAGAGTTGGGCTACAGCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
CDS-3UTR CCA 90 bp TGCAATAGGCTTGACTATCCTATCATTTGGCCAGATGCACTTTCCCCAGTAAACTCCTGTATACAACCATaGGAAAATGGACATCCAGTA +
Preference number: 4 (lower is better)
Translates to: CNRLDYPIIWPDALSPVNSCIQP*ENGHPV
Trigger: TACTGGATGTCCATTTTCCCATGGTTGTATACAGGA...GTTTACTGGGGAAAGTGCATCTGGCCAAATGATAGGATAGTCAAGCCTATTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
3UTR CAA 72 bp GCCACAAAAGAAACAGTACCAGTACATGCTACAACATaGATGCAGTTTGAACTCATTGCTTTGTGGAAGGTG +
Preference number: 4 (lower is better)
Translates to: ATKETVPVHATT*MQFELIALWKV
Trigger: CACCTTCCACAAAGCAATGAGTTCAAACTGCATCAATGTTGTAGCATGTACTGGTACTGTTTCTTTTGTGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
CDS-3UTR TCA 90 bp GCCAGATGCACTTTCCCCAGTAAACTTAAACAACAAAAACAACAACAACAACAACCTTTCTTGGAGGGATaGGGATCACAGAGTTTTGCA +
Preference number: 4 (lower is better)
Translates to: ARCTFPSKLKQQKQQQQQPFLEG*GSQSFA
Trigger: TGCAAAACTCTGTGATCCTCATCCCTCCAAGAAAGG...TTGTTGTTGTTGTTGTTTTTGTTGTTTAAGTTTACTGGGGAAAGTGCATCTGGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
CDS-3UTR TCA 90 bp GAATTACCTTTAAAACTGAGCAGCAATATAATGGTTGCCACTTTTGTGACTGGTCCTTTCTTGGAGGGATaGGGATCACAGAGTTTTGCA +
Preference number: 4 (lower is better)
Translates to: ELPLKLSSNIMVATFVTGPFLEG*GSQSFA
Trigger: TGCAAAACTCTGTGATCCTCATCCCTCCAAGAAAGG...ACCAGTCACAAAAGTGGCAACCATTATATTGCTGCTCAGTTTTAAAGGTAATTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000202945.4
CDS-3UTR TCA 90 bp GCCAGATGCACTTTCCCCAGTAAACTTAAACAACAAAAACAACAACAACAACAAGTTCTCAAGGTAAGCTaGGCTTGCTCCTTTCTTGGA +
Preference number: 4 (lower is better)
Translates to: ARCTFPSKLKQQKQQQQQVLKVS*ACSFLG
Trigger: TCCAAGAAAGGAGCAAGCTCAGCTTACCTTGAGAAC...TTGTTGTTGTTGTTGTTTTTGTTGTTTAAGTTTACTGGGGAAAGTGCATCTGGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
CDS-3UTR TCA 90 bp TGCAATAGGCTTGACTATCCTATCATTTGGCCAGATGCACTTTCCCCAGTAAACTCTTCATCCTTTTCTTaGAGAGATTTCAATTCCTCC +
Preference number: 4 (lower is better)
Translates to: CNRLDYPIIWPDALSPVNSSSFS*RDFNSS
Trigger: GGAGGAATTGAAATCTCTTCAAGAAAAGGATGAAGA...GTTTACTGGGGAAAGTGCATCTGGCCAAATGATAGGATAGTCAAGCCTATTGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
CDS-3UTR TCA 90 bp ACAATCAGGAGAGTATCCATACAAGGTGTCTATGAGTTGGGATGGAAAAGTGAGTCATCTGTAAACGAATaGACAATTTCCCAGAACTCC +
Preference number: 4 (lower is better)
Translates to: TIRRVSIQGVYELGWKSESSVNE*TISQNS
Trigger: GGAGTTCTGGGAAATTGTTCATTCGTTTACAGATGA...CTCACTTTTCCATCCCAACTCATAGACACCTTGTATGGATACTCTCCTGATTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
CDS-3UTR GCA 90 bp TTTGGGGGATATACAATTTATTTCTCAGGAGTACTAGTTCCATTCATTTCCAGGCACAAAACTCATTCGTaGAGGCCTCATTTCCACAGC +
Preference number: 4 (lower is better)
Translates to: FGGYTIYFSGVLVPFISRHKTHS*RPHFHS
Trigger: GCTGTGGAAATGAGGCCTGCACGAATGAGTTTTGTG...CCTGGAAATGAATGGAACTAGTACTCCTGAGAAATAAATTGTATATCCCCCAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
CDS-3UTR GCA 90 bp AGCAGCAATATAATGGTTGCCACTTTTGTGACTGGTGTTAGAAGCAAATATGAACACAAAACTCATTCGTaGAGGCCTCATTTCCACAGC +
Preference number: 4 (lower is better)
Translates to: SSNIMVATFVTGVRSKYEHKTHS*RPHFHS
Trigger: GCTGTGGAAATGAGGCCTGCACGAATGAGTTTTGTG...TTCATATTTGCTTCTAACACCAGTCACAAAAGTGGCAACCATTATATTGCTGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202945.4
CDS-3UTR GCA 90 bp TGCAATAGGCTTGACTATCCTATCATTTGGCCAGATGCACTTTCCCCAGTAAACCCCTCCCACTACATTTaGATAGTAAACCATTTTCAA +
Preference number: 4 (lower is better)
Translates to: CNRLDYPIIWPDALSPVNPSHYI*IVNHFQ
Trigger: TTGAAAATGGTTTACTATGCAAATGTAGTGGGAGGG...GTTTACTGGGGAAAGTGCATCTGGCCAAATGATAGGATAGTCAAGCCTATTGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
CDS-3UTR CCA 90 bp TTTATTGGCTTTGTGAAAATGAAGGACCATGTGCACAGATCTTTAGCAGTCATTAGCTTGCTCCTTTCTTaGAGGGATGAGGATCACAGA +
Preference number: 4 (lower is better)
Translates to: FIGFVKMKDHVHRSLAVISLLLS*RDEDHR
Trigger: TCTGTGATCCTCATCCCTCCAAGAAAGGAGCAAGCT...AATGACTGCTAAAGATCTGTGCACATGGTCCTTCATTTTCACAAAGCCAATAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
CDS-3UTR CCA 90 bp AGCAGCAATATAATGGTTGCCACTTTTGTGACTGGTGTTAGAAGCAAATATGAAAGCTTGCTCCTTTCTTaGAGGGATGAGGATCACAGA +
Preference number: 4 (lower is better)
Translates to: SSNIMVATFVTGVRSKYESLLLS*RDEDHR
Trigger: TCTGTGATCCTCATCCCTCCAAGAAAGGAGCAAGCT...TTCATATTTGCTTCTAACACCAGTCACAAAAGTGGCAACCATTATATTGCTGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202945.4
CDS-3UTR CCA 90 bp ACAATCAGGAGAGTATCCATACAAGGTGTCTATGAGTTGGGATGGAAAAGTGAGTCCTGTATACAACCATaGGAAAATGGACATCCAGTA +
Preference number: 4 (lower is better)
Translates to: TIRRVSIQGVYELGWKSESCIQP*ENGHPV
Trigger: TACTGGATGTCCATTTTCCCATGGTTGTATACAGGA...CTCACTTTTCCATCCCAACTCATAGACACCTTGTATGGATACTCTCCTGATTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
CDS-3UTR TCA 90 bp GGACAATGGGACAAAGTTCAAGAATCCAAAATTAGCCATATTTATGGTCATTTGCCTTTCTTGGAGGGATaGGGATCACAGAGTTTTGCA +
Preference number: 4 (lower is better)
Translates to: GQWDKVQESKISHIYGHLPFLEG*GSQSFA
Trigger: TGCAAAACTCTGTGATCCTCATCCCTCCAAGAAAGG...CAAATGACCATAAATATGGCTAATTTTGGATTCTTGAACTTTGTCCCATTGTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
CDS-3UTR GCA 90 bp GGACAATGGGACAAAGTTCAAGAATCCAAAATTAGCCATATTTATGGTCATTTGCACAAAACTCATTCGTaGAGGCCTCATTTCCACAGC +
Preference number: 4 (lower is better)
Translates to: GQWDKVQESKISHIYGHLHKTHS*RPHFHS
Trigger: GCTGTGGAAATGAGGCCTGCACGAATGAGTTTTGTG...CAAATGACCATAAATATGGCTAATTTTGGATTCTTGAACTTTGTCCCATTGTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
CDS-3UTR GCA 90 bp CTGAGCAGCAATATAATGGTTGCCACTTTTGTGACTGGTGTTAGAAGCAAATATAGCAGCAGCAGAACATaGAGCTTTTTCCTTTTCATC +
Preference number: 4 (lower is better)
Translates to: LSSNIMVATFVTGVRSKYSSSRT*SFFLFI
Trigger: GATGAAAAGGAAAAAGCTGCATGTTCTGCTGCTGCT...ATATTTGCTTCTAACACCAGTCACAAAAGTGGCAACCATTATATTGCTGCTCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000202945.4
CDS-3UTR CCA 90 bp GCCAGATGCACTTTCCCCAGTAAACTTAAACAACAAAAACAACAACAACAACAATCAATGTCCTCAGACTaGGATTCTCCTGGTGATCTT +
Preference number: 4 (lower is better)
Translates to: ARCTFPSKLKQQKQQQQQSMSSD*DSPGDL
Trigger: AAGATCACCAGGAGAATCCCAGTCTGAGGACATTGA...TTGTTGTTGTTGTTGTTTTTGTTGTTTAAGTTTACTGGGGAAAGTGCATCTGGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
CDS-3UTR TCA 90 bp TTTGGGGGATATACAATTTATTTCTCAGGAGTACTAGTTCCATTCATTTCCAGGTCCTCCACAACCAACTaGAAAAACTCTTTGGAAACG +
Preference number: 4 (lower is better)
Translates to: FGGYTIYFSGVLVPFISRSSTTN*KNSLET
Trigger: CGTTTCCAAAGAGTTTTTTCAGTTGGTTGTGGAGGA...CCTGGAAATGAATGGAACTAGTACTCCTGAGAAATAAATTGTATATCCCCCAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
CDS-3UTR TCA 90 bp AGCAGCAATATAATGGTTGCCACTTTTGTGACTGGTGTTAGAAGCAAATATGAATCCTCCACAACCAACTaGAAAAACTCTTTGGAAACG +
Preference number: 4 (lower is better)
Translates to: SSNIMVATFVTGVRSKYESSTTN*KNSLET
Trigger: CGTTTCCAAAGAGTTTTTTCAGTTGGTTGTGGAGGA...TTCATATTTGCTTCTAACACCAGTCACAAAAGTGGCAACCATTATATTGCTGCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000202945.4
CDS-3UTR TCA 90 bp TTTGGGGGATATACAATTTATTTCTCAGGAGTACTAGTTCCATTCATTTCCAGGTCATTAGTCACCATATaGAAACCTCTGCGAAATGCC +
Preference number: 4 (lower is better)
Translates to: FGGYTIYFSGVLVPFISRSLVTI*KPLRNA
Trigger: GGCATTTCGCAGAGGTTTTCATATGGTGACTAATGA...CCTGGAAATGAATGGAACTAGTACTCCTGAGAAATAAATTGTATATCCCCCAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
CDS-3UTR TCA 90 bp TTTATTGGCTTTGTGAAAATGAAGGACCATGTGCACAGATCTTTAGCAGTCATTTCATTAGTCACCATATaGAAACCTCTGCGAAATGCC +
Preference number: 4 (lower is better)
Translates to: FIGFVKMKDHVHRSLAVISLVTI*KPLRNA
Trigger: GGCATTTCGCAGAGGTTTTCATATGGTGACTAATGA...AATGACTGCTAAAGATCTGTGCACATGGTCCTTCATTTTCACAAAGCCAATAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
CDS-3UTR TCA 90 bp TTACCTTTAAAACTGAGCAGCAATATAATGGTTGCCACTTTTGTGACTGGTGTTTCATTAGTCACCATATaGAAACCTCTGCGAAATGCC +
Preference number: 4 (lower is better)
Translates to: LPLKLSSNIMVATFVTGVSLVTI*KPLRNA
Trigger: GGCATTTCGCAGAGGTTTTCATATGGTGACTAATGA...AACACCAGTCACAAAAGTGGCAACCATTATATTGCTGCTCAGTTTTAAAGGTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202945.4
CDS-3UTR GCA 90 bp CTGAGCAGCAATATAATGGTTGCCACTTTTGTGACTGGTGTTAGAAGCAAATATGGCTTTAATAGCTGCTaGATTGTTATCCATACGAAG +
Preference number: 4 (lower is better)
Translates to: LSSNIMVATFVTGVRSKYGFNSC*IVIHTK
Trigger: CTTCGTATGGATAACAATGCAGCAGCTATTAAAGCC...ATATTTGCTTCTAACACCAGTCACAAAAGTGGCAACCATTATATTGCTGCTCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202945.4
CDS-3UTR GCA 90 bp CTGAGCAGCAATATAATGGTTGCCACTTTTGTGACTGGTGTTAGAAGCAAATATAAGGGCTTTAATAGCTaGTGCATTGTTATCCATACG +
Preference number: 4 (lower is better)
Translates to: LSSNIMVATFVTGVRSKYKGFNS*CIVIHT
Trigger: CGTATGGATAACAATGCAGCAGCTATTAAAGCCCTT...ATATTTGCTTCTAACACCAGTCACAAAAGTGGCAACCATTATATTGCTGCTCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202945.4
CDS-3UTR GCA 90 bp CTGAGCAGCAATATAATGGTTGCCACTTTTGTGACTGGTGTTAGAAGCAAATATAAAGCTCAGAACCAGTaGCTCAGCACTAGAAAATAT +
Preference number: 4 (lower is better)
Translates to: LSSNIMVATFVTGVRSKYKAQNQ*LSTRKY
Trigger: ATATTTTCTAGTGCTGAGGCACTGGTTCTGAGCTTT...ATATTTGCTTCTAACACCAGTCACAAAAGTGGCAACCATTATATTGCTGCTCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202945.4
3UTR CAA 72 bp ATTAACTATAGACCACGATATGTACACTCAATTTGTTaGCTGCAGCTGCCAAGTTTCCAGAGAAGTTTTGCT +
Preference number: 4 (lower is better)
Translates to: INYRPRYVHSIC*LQLPSFQRSFA
Trigger: AGCAAAACTTCTCTGGAAACTTGGCAGCTGCAGCAAACAAATTGAGTGTACATATCGTGGTCTATAGTTAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
CDS-3UTR TCA 90 bp CCAGATGCACTTTCCCCAGTAAACTTAAACAACAAAAACAACAACAACAACAAATCCTCCACAACCAACTaGAAAAACTCTTTGGAAACG +
Preference number: 4 (lower is better)
Translates to: PDALSPVNLNNKNNNNNKSSTTN*KNSLET
Trigger: CGTTTCCAAAGAGTTTTTTCAGTTGGTTGTGGAGGA...TTTGTTGTTGTTGTTGTTTTTGTTGTTTAAGTTTACTGGGGAAAGTGCATCTGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
CDS-3UTR TCA 90 bp CTGAGCAGCAATATAATGGTTGCCACTTTTGTGACTGGTGTTAGAAGCAAATATGTGATATCTGGAAAGTaGTCATCATATCATCTTCCA +
Preference number: 4 (lower is better)
Translates to: LSSNIMVATFVTGVRSKYVISGK*SSYHLP
Trigger: TGGAAGATGATATGATGATCACTTTCCAGATATCAC...ATATTTGCTTCTAACACCAGTCACAAAAGTGGCAACCATTATATTGCTGCTCAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202945.4
CDS-3UTR GCA 90 bp GCCAGATGCACTTTCCCCAGTAAACTTAAACAACAAAAACAACAACAACAACAAAAGGGCTTTAATAGCTaGTGCATTGTTATCCATACG +
Preference number: 4 (lower is better)
Translates to: ARCTFPSKLKQQKQQQQQKGFNS*CIVIHT
Trigger: CGTATGGATAACAATGCAGCAGCTATTAAAGCCCTT...TTGTTGTTGTTGTTGTTTTTGTTGTTTAAGTTTACTGGGGAAAGTGCATCTGGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
CDS-3UTR GCA 90 bp CAAGGTAGTTTCCACTGTGAATTTACTCAGATTCCATACAAAAGAGAAGATGCTAAGGGCTTTAATAGCTaGTGCATTGTTATCCATACG +
Preference number: 4 (lower is better)
Translates to: QGSFHCEFTQIPYKREDAKGFNS*CIVIHT
Trigger: CGTATGGATAACAATGCAGCAGCTATTAAAGCCCTT...AGCATCTTCTCTTTTGTATGGAATCTGAGTAAATTCACAGTGGAAACTACCTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
CDS-3UTR GCA 90 bp GCCAGATGCACTTTCCCCAGTAAACTTAAACAACAAAAACAACAACAACAACAAAATTCCTCCTTTGTGTaGTGTTTGACTTTCCGAAAG +
Preference number: 4 (lower is better)
Translates to: ARCTFPSKLKQQKQQQQQNSSFV*CLTFRK
Trigger: CTTTCGGAAAGTCAAACAGCACACAAAGGAGGAATT...TTGTTGTTGTTGTTGTTTTTGTTGTTTAAGTTTACTGGGGAAAGTGCATCTGGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
CDS-3UTR GCA 90 bp GAATTACCTTTAAAACTGAGCAGCAATATAATGGTTGCCACTTTTGTGACTGGTAATTCCTCCTTTGTGTaGTGTTTGACTTTCCGAAAG +
Preference number: 4 (lower is better)
Translates to: ELPLKLSSNIMVATFVTGNSSFV*CLTFRK
Trigger: CTTTCGGAAAGTCAAACAGCACACAAAGGAGGAATT...ACCAGTCACAAAAGTGGCAACCATTATATTGCTGCTCAGTTTTAAAGGTAATTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202945.4
CDS-3UTR GCA 90 bp CCAGATGCACTTTCCCCAGTAAACTTAAACAACAAAAACAACAACAACAACAAAAGCAGCAGCAGAACATaGAGCTTTTTCCTTTTCATC +
Preference number: 4 (lower is better)
Translates to: PDALSPVNLNNKNNNNNKSSSRT*SFFLFI
Trigger: GATGAAAAGGAAAAAGCTGCATGTTCTGCTGCTGCT...TTTGTTGTTGTTGTTGTTTTTGTTGTTTAAGTTTACTGGGGAAAGTGCATCTGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
CDS-3UTR GCA 90 bp CAGCATATCAATACAATGACAATATTCAGCCACAAAAGAAACAGTACCAGTACAAGCAGCAGCAGAACATaGAGCTTTTTCCTTTTCATC +
Preference number: 4 (lower is better)
Translates to: QHINTMTIFSHKRNSTSTSSSRT*SFFLFI
Trigger: GATGAAAAGGAAAAAGCTGCATGTTCTGCTGCTGCT...TGTACTGGTACTGTTTCTTTTGTGGCTGAATATTGTCATTGTATTGATATGCTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
CDS-3UTR TCA 90 bp TTTGGGGGATATACAATTTATTTCTCAGGAGTACTAGTTCCATTCATTTCCAGGTCTTCATCCTTTTCTTaGAGAGATTTCAATTCCTCC +
Preference number: 4 (lower is better)
Translates to: FGGYTIYFSGVLVPFISRSSSFS*RDFNSS
Trigger: GGAGGAATTGAAATCTCTTCAAGAAAAGGATGAAGA...CCTGGAAATGAATGGAACTAGTACTCCTGAGAAATAAATTGTATATCCCCCAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
CDS-3UTR TCA 90 bp AGCAGCAATATAATGGTTGCCACTTTTGTGACTGGTGTTAGAAGCAAATATGAATCTTCATCCTTTTCTTaGAGAGATTTCAATTCCTCC +
Preference number: 4 (lower is better)
Translates to: SSNIMVATFVTGVRSKYESSSFS*RDFNSS
Trigger: GGAGGAATTGAAATCTCTTCAAGAAAAGGATGAAGA...TTCATATTTGCTTCTAACACCAGTCACAAAAGTGGCAACCATTATATTGCTGCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202945.4
CDS-3UTR TCA 90 bp TTTGGGGGATATACAATTTATTTCTCAGGAGTACTAGTTCCATTCATTTCCAGGGTGATATCTGGAAAGTaGTCATCATATCATCTTCCA +
Preference number: 4 (lower is better)
Translates to: FGGYTIYFSGVLVPFISRVISGK*SSYHLP
Trigger: TGGAAGATGATATGATGATCACTTTCCAGATATCAC...CCTGGAAATGAATGGAACTAGTACTCCTGAGAAATAAATTGTATATCCCCCAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
CDS-3UTR GCA 90 bp CCAGATGCACTTTCCCCAGTAAACTTAAACAACAAAAACAACAACAACAACAAAAAAGCTCAGAACCAGTaGCTCAGCACTAGAAAATAT +
Preference number: 4 (lower is better)
Translates to: PDALSPVNLNNKNNNNNKKAQNQ*LSTRKY
Trigger: ATATTTTCTAGTGCTGAGGCACTGGTTCTGAGCTTT...TTTGTTGTTGTTGTTGTTTTTGTTGTTTAAGTTTACTGGGGAAAGTGCATCTGG
37% GC, longest homopolymer 6 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
CDS-3UTR GCA 90 bp TTACCTTTAAAACTGAGCAGCAATATAATGGTTGCCACTTTTGTGACTGGTGTTCCCTCCCACTACATTTaGATAGTAAACCATTTTCAA +
Preference number: 4 (lower is better)
Translates to: LPLKLSSNIMVATFVTGVPSHYI*IVNHFQ
Trigger: TTGAAAATGGTTTACTATGCAAATGTAGTGGGAGGG...AACACCAGTCACAAAAGTGGCAACCATTATATTGCTGCTCAGTTTTAAAGGTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000202945.4
CDS-3UTR TCA 90 bp GGACAATGGGACAAAGTTCAAGAATCCAAAATTAGCCATATTTATGGTCATTTGGTGATATCTGGAAAGTaGTCATCATATCATCTTCCA +
Preference number: 4 (lower is better)
Translates to: GQWDKVQESKISHIYGHLVISGK*SSYHLP
Trigger: TGGAAGATGATATGATGATCACTTTCCAGATATCAC...CAAATGACCATAAATATGGCTAATTTTGGATTCTTGAACTTTGTCCCATTGTCC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR CAA 72 bp GTTCAAGAATCCAAAATTAGCCATATTTATGGTCATTaGTACGTGTTTTTGACAAAGATAGCAAGCCTACTC +
Preference number: 4 (lower is better)
Translates to: VQESKISHIYGH*YVFLTKIASLL
Trigger: GAGTAGGCTTGCTATCTTTGTCAAAAACACGTACAAATGACCATAAATATGGCTAATTTTGGATTCTTGAAC
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
3UTR CAA 72 bp CCACTACAATCAGAAACAAGAAAAAGATGTACACTCTaGCCACTTCAATTTAATATCATATTGGACGTGCTA +
Preference number: 4 (lower is better)
Translates to: PLQSETRKRCTL*PLQFNIILDVL
Trigger: TAGCACGTCCAATATGATATTAAATTGAAGTGGCAAGAGTGTACATCTTTTTCTTGTTTCTGATTGTAGTGG
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
CDS GCA 90 bp TATCCATACGAAGAAAAGTTGGACAGGAAGCACAAAACTCATTCGTaGAGGCCTCATTTCCACAGCCCTCAGTTAACTGATGGTAGTAGC +
Preference number: 5 (lower is better)
Translates to: YPYEEKLDRKHKTHS*RPHFHSPQLTDGSS
Trigger: GCTACTACCATCAGTTAACTGAGGGCTGTGGAAATGAGGCCTGCACGAATGAGTTTTGTGCTTCCTGTCCAACTTTTCTTCGTATGGATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
ENSMUST00000201409.4
ENSMUST00000202440.4
ENSMUST00000202945.4
ENSMUST00000207686.2
ENSMUST00000208313.2
CDS-3UTR CAA 90 bp TGCAATAGGCTTGACTATCCTATCATTTGGCCAGATGCACTTTCCCCAGTAAACTCCCTCATCTACTCCTaGTTCTCCTTCAAATTCCAC +
Preference number: 5 (lower is better)
Translates to: CNRLDYPIIWPDALSPVNSLIYS*FSFKFH
Trigger: GTGGAATTTGAAGGAGAACAAGGAGTAGATGAGGGA...GTTTACTGGGGAAAGTGCATCTGGCCAAATGATAGGATAGTCAAGCCTATTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
CDS CCA 90 bp AAGGGCTTTAATAGCTGCTGCATTGTTATCCATACGAAGAAAAGTTaGACAGGAAGCACAAAACTCATTCGTGCAGGCCTCATTTCCACA +
Preference number: 5 (lower is better)
Translates to: KGFNSCCIVIHTKKS*TGSTKLIRAGLIST
Trigger: TGTGGAAATGAGGCCTGCACGAATGAGTTTTGTGCTTCCTGTCCAACTTTTCTTCGTATGGATAACAATGCAGCAGCTATTAAAGCCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
ENSMUST00000201409.4
ENSMUST00000202945.4
ENSMUST00000207686.2
ENSMUST00000208313.2
CDS-3UTR CAA 90 bp TGCAATAGGCTTGACTATCCTATCATTTGGCCAGATGCACTTTCCCCAGTAAACCCATACGAAGAAAAGTaGGACAGGAAGCACAAAACT +
Preference number: 5 (lower is better)
Translates to: CNRLDYPIIWPDALSPVNPYEEK*DRKHKT
Trigger: AGTTTTGTGCTTCCTGTCCAACTTTTCTTCGTATGG...GTTTACTGGGGAAAGTGCATCTGGCCAAATGATAGGATAGTCAAGCCTATTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
CDS-3UTR CAA 90 bp CTGAGCAGCAATATAATGGTTGCCACTTTTGTGACTGGTGTTAGAAGCAAATATCCATACGAAGAAAAGTaGGACAGGAAGCACAAAACT +
Preference number: 5 (lower is better)
Translates to: LSSNIMVATFVTGVRSKYPYEEK*DRKHKT
Trigger: AGTTTTGTGCTTCCTGTCCAACTTTTCTTCGTATGG...ATATTTGCTTCTAACACCAGTCACAAAAGTGGCAACCATTATATTGCTGCTCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000202945.4
CDS-3UTR CAA 90 bp TTACCTTTAAAACTGAGCAGCAATATAATGGTTGCCACTTTTGTGACTGGTGTTTCCCTCATCTACTCCTaGTTCTCCTTCAAATTCCAC +
Preference number: 5 (lower is better)
Translates to: LPLKLSSNIMVATFVTGVSLIYS*FSFKFH
Trigger: GTGGAATTTGAAGGAGAACAAGGAGTAGATGAGGGA...AACACCAGTCACAAAAGTGGCAACCATTATATTGCTGCTCAGTTTTAAAGGTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202945.4
CDS-3UTR CAA 90 bp CCAGATGCACTTTCCCCAGTAAACTTAAACAACAAAAACAACAACAACAACAAATCCCTCATCTACTCCTaGTTCTCCTTCAAATTCCAC +
Preference number: 5 (lower is better)
Translates to: PDALSPVNLNNKNNNNNKSLIYS*FSFKFH
Trigger: GTGGAATTTGAAGGAGAACAAGGAGTAGATGAGGGA...TTTGTTGTTGTTGTTGTTTTTGTTGTTTAAGTTTACTGGGGAAAGTGCATCTGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
CDS-3UTR CAA 90 bp CAGCATATCAATACAATGACAATATTCAGCCACAAAAGAAACAGTACCAGTACAGTTCTATTAGATGCTTaGCAGCTGCTCGCTTCATTC +
Preference number: 5 (lower is better)
Translates to: QHINTMTIFSHKRNSTSTVLLDA*QLLASF
Trigger: GAATGAAGCGAGCAGCTGCAAAGCATCTAATAGAAC...TGTACTGGTACTGTTTCTTTTGTGGCTGAATATTGTCATTGTATTGATATGCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
CDS-3UTR CAA 90 bp TTTGGGGGATATACAATTTATTTCTCAGGAGTACTAGTTCCATTCATTTCCAGGGTCTTCATCCTTTTCTaGAAGAGATTTCAATTCCTC +
Preference number: 5 (lower is better)
Translates to: FGGYTIYFSGVLVPFISRVFILF*KRFQFL
Trigger: GAGGAATTGAAATCTCTTCAAGAAAAGGATGAAGAC...CCTGGAAATGAATGGAACTAGTACTCCTGAGAAATAAATTGTATATCCCCCAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
CDS-3UTR CAA 90 bp TTACCTTTAAAACTGAGCAGCAATATAATGGTTGCCACTTTTGTGACTGGTGTTGTCTTCATCCTTTTCTaGAAGAGATTTCAATTCCTC +
Preference number: 5 (lower is better)
Translates to: LPLKLSSNIMVATFVTGVVFILF*KRFQFL
Trigger: GAGGAATTGAAATCTCTTCAAGAAAAGGATGAAGAC...AACACCAGTCACAAAAGTGGCAACCATTATATTGCTGCTCAGTTTTAAAGGTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000202945.4
CDS-3UTR CAA 90 bp GGACAATGGGACAAAGTTCAAGAATCCAAAATTAGCCATATTTATGGTCATTTGGTCTTCATCCTTTTCTaGAAGAGATTTCAATTCCTC +
Preference number: 5 (lower is better)
Translates to: GQWDKVQESKISHIYGHLVFILF*KRFQFL
Trigger: GAGGAATTGAAATCTCTTCAAGAAAAGGATGAAGAC...CAAATGACCATAAATATGGCTAATTTTGGATTCTTGAACTTTGTCCCATTGTCC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200758.4
CDS GCA 72 bp ATTAATTTTATAAAGCTCAAGGGCTTTAATAGCTGCTaGATTGTTATCCATACGAAGAAAAGTTGGACAGGA +
Preference number: 6 (lower is better)
Translates to: INFIKLKGFNSC*IVIHTKKSWTG
Trigger: TCCTGTCCAACTTTTCTTCGTATGGATAACAATGCAGCAGCTATTAAAGCCCTTGAGCTTTATAAAATTAAT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
ENSMUST00000201409.4
ENSMUST00000202945.4
ENSMUST00000207686.2
ENSMUST00000208313.2
CDS GCA 72 bp TGCATTAATTTTATAAAGCTCAAGGGCTTTAATAGCTaGTGCATTGTTATCCATACGAAGAAAAGTTGGACA +
Preference number: 6 (lower is better)
Translates to: CINFIKLKGFNS*CIVIHTKKSWT
Trigger: TGTCCAACTTTTCTTCGTATGGATAACAATGCAGCAGCTATTAAAGCCCTTGAGCTTTATAAAATTAATGCA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000107537.5
ENSMUST00000200758.4
ENSMUST00000201409.4
ENSMUST00000202945.4
ENSMUST00000207686.2
ENSMUST00000208313.2