Pregenerated sensors for UBE2V2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022674Ensembl transcript IDs: ENSMUST00000115776.2, ENSMUST00000115777.10, ENSMUST00000118236.8, ENSMUST00000229859.2
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACACAGGAAAGTGAAGGCAAGAACCAACACTCCAAAGGTAACCTCTaGTCTTCACACAAGTACACACACGTATGCGCGCGCACACATCCC | + |
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Preference number: 1 (lower is better) Translates to: TQESEGKNQHSKGNL*SSHKYTHVCARTHP Trigger: GGGATGTGTGCGCGCGCATACGTGTGTGTACTTGTGTGAAGATCAGAGGTTACCTTTGGAGTGTTGGTTCTTGCCTTCACTTTCCTGTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115777.10 |
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| 3UTR TCA 90 bp | CAGCCTTGGAAAGCAGAGGCAGGGGGATCTATTTCTATAGCAAGCTaGTTAGCAAGTCTAGCTGCATCAGTGAGCTCTGGGCTTCATTTA | + |
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Preference number: 1 (lower is better) Translates to: QPWKAEAGGSISIAS*LASLAASVSSGLHL Trigger: TAAATGAAGCCCAGAGCTCACTGATGCAGCTAGACTTGCTAATCAGCTTGCTATAGAAATAGATCCCCCTGCCTCTGCTTTCCAAGGCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000115777.10 |
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| 3UTR CCA 90 bp | ATTTCTTATTTTGTTTTAATTGCAGTCTTATGTACTAGCCCAGGCTaGCCAGGAACTTGTAATCGCCTGCCTCTGCCATTACCATGCCTA | + |
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Preference number: 1 (lower is better) Translates to: ISYFVLIAVLCTSPG*PGTCNRLPLPLPCL Trigger: TAGGCATGGTAATGGCAGAGGCAGGCGATTACAAGTTCCTGGCCAGCCTGGGCTAGTACATAAGACTGCAATTAAAACAAAATAAGAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115776.2 ENSMUST00000115777.10 |
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| 3UTR TCA 90 bp | ACGAATAAAGGAAGTTTGTTGATAATTAGACTAGCTCATTTAAAATaGGTCCACTTATGCTGGACATGGTGTACACCTGAACTAGTACTT | + |
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Preference number: 1 (lower is better) Translates to: TNKGSLLIIRLAHLK*VHLCWTWCTPELVL Trigger: AAGTACTAGTTCAGGTGTACACCATGTCCAGCATAAGTGGACTCATTTTAAATGAGCTAGTCTAATTATCAACAAACTTCCTTTATTCGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115777.10 |
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| 3UTR TCA 90 bp | AATGTTATGTGTATGTTCTATGTGGTTAAATATTTAGAACATCTTTaGGGGGCTGAGATGGCTCAATGGTTGAAAATGCTTGTTGGAGAT | + |
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Preference number: 1 (lower is better) Translates to: NVMCMFYVVKYLEHL*GAEMAQWLKMLVGD Trigger: ATCTCCAACAAGCATTTTCAACCATTGAGCCATCTCAGCCCCTCAAAGATGTTCTAAATATTTAACCACATAGAACATACACATAACATT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115777.10 |
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| 3UTR-3UTR TCA 90 bp | CCTGCCTCTGCCATTACCATGCCTAGCTTAATAACTCCCAATTTTGCTACCATGGTTTCCATGGCCACATaGCACTCTTTTGTCATGCTT | + |
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Preference number: 2 (lower is better) Translates to: PASAITMPSLITPNFATMVSMAT*HSFVML Trigger: AAGCATGACAAAAGAGTGTCATGTGGCCATGGAAAC...CATGGTAGCAAAATTGGGAGTTATTAAGCTAGGCATGGTAATGGCAGAGGCAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115776.2 ENSMUST00000115777.10 |
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| 3UTR-3UTR GCA 90 bp | GCATCCCAACACTTACTAGCTCCAAGTATCACAAGACACATTTTCAAGGCAGAAGACACTCTTTTGTCATaGTTTTGTCTTGAAAGCCTG | + |
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Preference number: 2 (lower is better) Translates to: ASQHLLAPSITRHIFKAEDTLLS*FCLESL Trigger: CAGGCTTTCAAGACAAAAGCATGACAAAAGAGTGTC...TTCTGCCTTGAAAATGTGTCTTGTGATACTTGGAGCTAGTAAGTGTTGGGATGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000115777.10 |
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| 3UTR-3UTR TCA 90 bp | GTTGAAAATGCTTGTTGGAGATCCGATTCCCAGAACCCACATAAAATAACAGGTCCAATTTTGCTACCATaGTATGGCTACCATAGCATA | + |
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Preference number: 2 (lower is better) Translates to: VENACWRSDSQNPHKITGPILLP*YGYHSI Trigger: TATGCTATGGTAGCCATATCATGGTAGCAAAATTGG...ACCTGTTATTTTATGTGGGTTCTGGGAATCGGATCTCCAACAAGCATTTTCAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000115777.10 |
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| 3UTR-3UTR CCA 90 bp | TACCAGATTCTACCAAAGGCTATCAAAAGCATCCCAACACTTACTAGCTCCAAGAAACAAATGTTTCCATaGCCACATGACACTCTTTTG | + |
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Preference number: 2 (lower is better) Translates to: YQILPKAIKSIPTLTSSKKQMFP*PHDTLL Trigger: CAAAAGAGTGTCATGTGGCCATGGAAACATTTGTTT...CTTGGAGCTAGTAAGTGTTGGGATGCTTTTGATAGCCTTTGGTAGAATCTGGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115777.10 |
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| 3UTR-3UTR TCA 90 bp | AACTCTCACAGTGGCATATACAAAGACAACATGAGACCAAAGTACCAGATTCTAGTCATGCTTTTGTCTTaGAAGCCTGAACTCCATTTT | + |
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Preference number: 2 (lower is better) Translates to: NSHSGIYKDNMRPKYQILVMLLS*KPELHF Trigger: AAAATGGAGTTCAGGCTTTCAAGACAAAAGCATGAC...TAGAATCTGGTACTTTGGTCTCATGTTGTCTTTGTATATGCCACTGTGAGAGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115777.10 |
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| 3UTR-3UTR CCA 90 bp | AACTCTCACAGTGGCATATACAAAGACAACATGAGACCAAAGTACCAGATTCTATGCATCAGTGAGCTCTaGGCTTCATTTAAAAACACT | + |
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Preference number: 2 (lower is better) Translates to: NSHSGIYKDNMRPKYQILCISEL*ASFKNT Trigger: AGTGTTTTTAAATGAAGCCCAGAGCTCACTGATGCA...TAGAATCTGGTACTTTGGTCTCATGTTGTCTTTGTATATGCCACTGTGAGAGTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000115777.10 |
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| 3UTR-3UTR TCA 90 bp | ACTTTCCAGAAAAACAAATGTTTCCATGGCCACATGACACTCTTTTGTCATGCTACGTCTCTTGTTACCTaGAAACATAATAGGTGTACA | + |
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Preference number: 2 (lower is better) Translates to: TFQKNKCFHGHMTLFCHATSLVT*KHNRCT Trigger: TGTACACCTATTATGTTTTCAGGTAACAAGAGACGT...AGCATGACAAAAGAGTGTCATGTGGCCATGGAAACATTTGTTTTTCTGGAAAGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000115776.2 ENSMUST00000115777.10 ENSMUST00000118236.8 |
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| 3UTR-3UTR TCA 90 bp | TCTTCCTTCTTGAGACTTTACTTTCCAGAAAAACAAATGTTTCCATGGCCACATGTCATGCTTTTGTCTTaGAAGCCTGAACTCCATTTT | + |
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Preference number: 2 (lower is better) Translates to: SSFLRLYFPEKQMFPWPHVMLLS*KPELHF Trigger: AAAATGGAGTTCAGGCTTTCAAGACAAAAGCATGAC...ATGTGGCCATGGAAACATTTGTTTTTCTGGAAAGTAAAGTCTCAAGAAGGAAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000115776.2 ENSMUST00000115777.10 ENSMUST00000118236.8 |
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| 3UTR-3UTR TCA 90 bp | ACTTCTCCAAAGAACATTAACTTTAGAAATTCTATTCCTGTGGACTCCCTGCTTACGTCTCTTGTTACCTaGAAACATAATAGGTGTACA | + |
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Preference number: 2 (lower is better) Translates to: TSPKNINFRNSIPVDSLLTSLVT*KHNRCT Trigger: TGTACACCTATTATGTTTTCAGGTAACAAGAGACGT...AAGCAGGGAGTCCACAGGAATAGAATTTCTAAAGTTAATGTTCTTTGGAGAAGT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115777.10 |
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| 3UTR-3UTR TCA 90 bp | TCTTCCTTCTTGAGACTTTACTTTCCAGAAAAACAAATGTTTCCATGGCCACATACGTCTCTTGTTACCTaGAAACATAATAGGTGTACA | + |
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Preference number: 2 (lower is better) Translates to: SSFLRLYFPEKQMFPWPHTSLVT*KHNRCT Trigger: TGTACACCTATTATGTTTTCAGGTAACAAGAGACGT...ATGTGGCCATGGAAACATTTGTTTTTCTGGAAAGTAAAGTCTCAAGAAGGAAGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000115776.2 ENSMUST00000115777.10 ENSMUST00000118236.8 |
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| 3UTR TCA 72 bp | GAACCAATGAGATGGCTCTGCAGTGAGGGCCCTTGTTaGCACGCATGGTACATGGTGATCAGAGTTCGACAT | + |
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Preference number: 3 (lower is better) Translates to: EPMRWLCSEGPC*HAWYMVIRVRH Trigger: ATGTCGAACTCTGATCACCATGTACCATGCGTGTCAACAAGGGCCCTCACTGCAGAGCCATCTCATTGGTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115777.10 |
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| 3UTR TCA 72 bp | GTTCTTAGAAGAGGAACCAATGAGATGGCTCTGCAGTaGGGGCCCTTGTTGACACGCATGGTACATGGTGAT | + |
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Preference number: 3 (lower is better) Translates to: VLRRGTNEMALQ*GPLLTRMVHGD Trigger: ATCACCATGTACCATGCGTGTCAACAAGGGCCCTCACTGCAGAGCCATCTCATTGGTTCCTCTTCTAAGAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115777.10 |
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| 3UTR TCA 72 bp | AAAGCAGAGGCAGGGGGATCTATTTCTATAGCAAGCTaGTTAGCAAGTCTAGCTGCATCAGTGAGCTCTGGG | + |
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Preference number: 3 (lower is better) Translates to: KAEAGGSISIAS*LASLAASVSSG Trigger: CCCAGAGCTCACTGATGCAGCTAGACTTGCTAATCAGCTTGCTATAGAAATAGATCCCCCTGCCTCTGCTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000115777.10 |
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| 3UTR-3UTR CAA 90 bp | CTTGGGTGGAGGAGAGAACTCTCACAGTGGCATATACAAAGACAACATGAGACCCCACATGACACTCTTTaGTCATGCTTTTGTCTTGAA | + |
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Preference number: 3 (lower is better) Translates to: LGWRRELSQWHIQRQHETPHDTL*SCFCLE Trigger: TTCAAGACAAAAGCATGACAAAAGAGTGTCATGTGG...GGTCTCATGTTGTCTTTGTATATGCCACTGTGAGAGTTCTCTCCTCCACCCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115777.10 |
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| 3UTR-3UTR CAA 90 bp | GCATCCCAACACTTACTAGCTCCAAGTATCACAAGACACATTTTCAAGGCAGAAGAGATGGCTCAATGGTaGAAAATGCTTGTTGGAGAT | + |
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Preference number: 3 (lower is better) Translates to: ASQHLLAPSITRHIFKAEEMAQW*KMLVGD Trigger: ATCTCCAACAAGCATTTTCAACCATTGAGCCATCTC...TTCTGCCTTGAAAATGTGTCTTGTGATACTTGGAGCTAGTAAGTGTTGGGATGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115777.10 |
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| 3UTR TCA 72 bp | GTAACTGAGATACCTCTTTGTGCGAAGAAATTAAACTaGGCATGTACGGTGTCACAACAAGTGCTCTGTAAG | + |
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Preference number: 3 (lower is better) Translates to: VTEIPLCAKKLN*ACTVSQQVLCK Trigger: CTTACAGAGCACTTGTTGTGACACCGTACATGCTCAGTTTAATTTCTTCGCACAAAGAGGTATCTCAGTTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115777.10 |
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| 3UTR TCA 72 bp | AAAATGAGTCCACTTATGCTGGACATGGTGTACACCTaGACTAGTACTTGGGAGGCTGAGACAGAAATAATT | + |
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Preference number: 3 (lower is better) Translates to: KMSPLMLDMVYT*TSTWEAETEII Trigger: AATTATTTCTGTCTCAGCCTCCCAAGTACTAGTTCAGGTGTACACCATGTCCAGCATAAGTGGACTCATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115777.10 |
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| 3UTR-3UTR CAA 90 bp | GCATCCCAACACTTACTAGCTCCAAGTATCACAAGACACATTTTCAAGGCAGAACAATTCTTTTACTTATaGTGTGGGTATTGTGCATGG | + |
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Preference number: 3 (lower is better) Translates to: ASQHLLAPSITRHIFKAEQFFYL*CGYCAW Trigger: CCATGCACAATACCCACACAATAAGTAAAAGAATTG...TTCTGCCTTGAAAATGTGTCTTGTGATACTTGGAGCTAGTAAGTGTTGGGATGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115777.10 |
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| 3UTR-3UTR CAA 90 bp | ACATCAGGCTCACTCCTCCAGCCTGCTAATGGCTTTTTAAATCATGTAACTCATCAATTCTTTTACTTATaGTGTGGGTATTGTGCATGG | + |
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Preference number: 3 (lower is better) Translates to: TSGSLLQPANGFLNHVTHQFFYL*CGYCAW Trigger: CCATGCACAATACCCACACAATAAGTAAAAGAATTG...ATGAGTTACATGATTTAAAAAGCCATTAGCAGGCTGGAGGAGTGAGCCTGATGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000229859.2 |
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| 3UTR-3UTR CAA 90 bp | ACTTTCCAGAAAAACAAATGTTTCCATGGCCACATGACACTCTTTTGTCATGCTAGCCTGAACTCCATTTaGAGTACTTCAGGTTCATGT | + |
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Preference number: 3 (lower is better) Translates to: TFQKNKCFHGHMTLFCHASLNSI*STSGSC Trigger: ACATGAACCTGAAGTACTCAAAATGGAGTTCAGGCT...AGCATGACAAAAGAGTGTCATGTGGCCATGGAAACATTTGTTTTTCTGGAAAGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000115776.2 ENSMUST00000115777.10 ENSMUST00000118236.8 |
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| 3UTR-3UTR CAA 90 bp | GCATCCCAACACTTACTAGCTCCAAGTATCACAAGACACATTTTCAAGGCAGAATTCTGTTCTTCCTTCTaGAGACTTTACTTTCCAGAA | + |
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Preference number: 3 (lower is better) Translates to: ASQHLLAPSITRHIFKAEFCSSF*RLYFPE Trigger: TTCTGGAAAGTAAAGTCTCAAGAAGGAAGAACAGAA...TTCTGCCTTGAAAATGTGTCTTGTGATACTTGGAGCTAGTAAGTGTTGGGATGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115777.10 |
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| 3UTR-3UTR CAA 90 bp | ACTTTCCAGAAAAACAAATGTTTCCATGGCCACATGACACTCTTTTGTCATGCTTGTGCTGCACGTCTCTaGTTACCTGAAAACATAATA | + |
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Preference number: 3 (lower is better) Translates to: TFQKNKCFHGHMTLFCHACAARL*LPENII Trigger: TATTATGTTTTCAGGTAACAAGAGACGTGCAGCACA...AGCATGACAAAAGAGTGTCATGTGGCCATGGAAACATTTGTTTTTCTGGAAAGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000115776.2 ENSMUST00000115777.10 ENSMUST00000118236.8 |
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| 3UTR-3UTR CAA 90 bp | TCTTCCTTCTTGAGACTTTACTTTCCAGAAAAACAAATGTTTCCATGGCCACATAGCCTGAACTCCATTTaGAGTACTTCAGGTTCATGT | + |
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Preference number: 3 (lower is better) Translates to: SSFLRLYFPEKQMFPWPHSLNSI*STSGSC Trigger: ACATGAACCTGAAGTACTCAAAATGGAGTTCAGGCT...ATGTGGCCATGGAAACATTTGTTTTTCTGGAAAGTAAAGTCTCAAGAAGGAAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000115776.2 ENSMUST00000115777.10 ENSMUST00000118236.8 |
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| 3UTR-3UTR CAA 90 bp | TCACTTGTGTTCCTACCACTTGTGTTTATTCCTTTTCATGGTGTTTCTAGTTCAAGCCTGAACTCCATTTaGAGTACTTCAGGTTCATGT | + |
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Preference number: 3 (lower is better) Translates to: SLVFLPLVFIPFHGVSSSSLNSI*STSGSC Trigger: ACATGAACCTGAAGTACTCAAAATGGAGTTCAGGCT...TGAACTAGAAACACCATGAAAAGGAATAAACACAAGTGGTAGGAACACAAGTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115777.10 |
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| 3UTR GCA 72 bp | ATCTATTTCTATAGCAAGCTGATTAGCAAGTCTAGCTaGATCAGTGAGCTCTGGGCTTCATTTAAAAACACT | + |
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Preference number: 3 (lower is better) Translates to: IYFYSKLISKSS*ISELWASFKNT Trigger: AGTGTTTTTAAATGAAGCCCAGAGCTCACTGATGCAGCTAGACTTGCTAATCAGCTTGCTATAGAAATAGAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000115777.10 |
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| 3UTR CCA 72 bp | CTCCAAAGAACATTAACTTTAGAAATTCTATTCCTGTaGACTCCCTGCTTTTTAGTAAGCTCGGTACTGAAT | + |
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Preference number: 3 (lower is better) Translates to: LQRTLTLEILFL*TPCFLVSSVLN Trigger: ATTCAGTACCGAGCTTACTAAAAAGCAGGGAGTCCACAGGAATAGAATTTCTAAAGTTAATGTTCTTTGGAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000115777.10 |
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| 3UTR-3UTR CAA 90 bp | TTCCAGAAAAACAAATGTTTCCATGGCCACATGACACTCTTTTGTCATGCTTTTCAATTCTTTTACTTATaGTGTGGGTATTGTGCATGG | + |
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Preference number: 3 (lower is better) Translates to: FQKNKCFHGHMTLFCHAFQFFYL*CGYCAW Trigger: CCATGCACAATACCCACACAATAAGTAAAAGAATTG...AAAAGCATGACAAAAGAGTGTCATGTGGCCATGGAAACATTTGTTTTTCTGGAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000115776.2 ENSMUST00000115777.10 ENSMUST00000118236.8 |
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| 3UTR-3UTR CAA 90 bp | TCTTCCTTCTTGAGACTTTACTTTCCAGAAAAACAAATGTTTCCATGGCCACATCAATTCTTTTACTTATaGTGTGGGTATTGTGCATGG | + |
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Preference number: 3 (lower is better) Translates to: SSFLRLYFPEKQMFPWPHQFFYL*CGYCAW Trigger: CCATGCACAATACCCACACAATAAGTAAAAGAATTG...ATGTGGCCATGGAAACATTTGTTTTTCTGGAAAGTAAAGTCTCAAGAAGGAAGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000115776.2 ENSMUST00000115777.10 ENSMUST00000118236.8 |
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| 3UTR TCA 72 bp | CTTGAGGCATTACAACTGAACAAAAACTGGTCAAACTaGAGCAATGAAAGTGTATTGCTACTTATCAGAAAA | + |
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Preference number: 3 (lower is better) Translates to: LEALQLNKNWSN*SNESVLLLIRK Trigger: TTTTCTGATAAGTAGCAATACACTTTCATTGCTTCAGTTTGACCAGTTTTTGTTCAGTTGTAATGCCTCAAG 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000115777.10 |
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| CDS-3UTR CCA 90 bp | TTCCAGAAAAACAAATGTTTCCATGGCCACATGACACTCTTTTGTCATGCTTTTCCGTGCATCCACCCTTaGTGGCCCAATAATCATGCC | + |
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Preference number: 4 (lower is better) Translates to: FQKNKCFHGHMTLFCHAFPCIHP*WPNNHA Trigger: GGCATGATTATTGGGCCACCAAGGGTGGATGCACGG...AAAAGCATGACAAAAGAGTGTCATGTGGCCATGGAAACATTTGTTTTTCTGGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000115776.2 ENSMUST00000118236.8 |
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| 3UTR CAA 72 bp | CCACATAAAATAACAGGTAAGGCTATAATTCCAGCCTaGGAAAGCAGAGGCAGGGGGATCTATTTCTATAGC | + |
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Preference number: 4 (lower is better) Translates to: PHKITGKAIIPA*ESRGRGIYFYS Trigger: GCTATAGAAATAGATCCCCCTGCCTCTGCTTTCCAAGGCTGGAATTATAGCCTTACCTGTTATTTTATGTGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115777.10 |
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| 3UTR CAA 72 bp | GAAAAACAAATGTTTCCATGGCCACATGACACTCTTTaGTCATGCTTTTGTCTTGAAAGCCTGAACTCCATT | + |
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Preference number: 4 (lower is better) Translates to: EKQMFPWPHDTL*SCFCLESLNSI Trigger: AATGGAGTTCAGGCTTTCAAGACAAAAGCATGACAAAAGAGTGTCATGTGGCCATGGAAACATTTGTTTTTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000115776.2 ENSMUST00000115777.10 ENSMUST00000118236.8 |
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