Pregenerated sensors for UBE2U (Mus musculus)
Ensembl gene IDs: ENSMUSG00000069733Ensembl transcript IDs: ENSMUST00000092730.5, ENSMUST00000133493.9
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | TTTTCTATTTTGTGCTTCCAGAAAGATGAGATCAACTaGGGTAGAGAGCAGAAGCCAGGTCCTGAGCATCTC | + |
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Preference number: 3 (lower is better) Translates to: FSILCFQKDEIN*GREQKPGPEHL Trigger: GAGATGCTCAGGACCTGGCTTCTGCTCTCTACCCCAGTTGATCTCATCTTTCTGGAAGCACAAAATAGAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS-3UTR TCA 90 bp | GGTAGAGAGCAGAAGCCAGGTCCTGAGCATCTCCTAAAACTGTTCCCTGAGACTAGCAGTCTGCCACTTTaGGAGTGCAAACTTGGACTC | + |
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Preference number: 4 (lower is better) Translates to: GREQKPGPEHLLKLFPETSSLPL*ECKLGL Trigger: GAGTCCAAGTTTGCACTCTCAAAGTGGCAGACTGCT...AGTCTCAGGGAACAGTTTTAGGAGATGCTCAGGACCTGGCTTCTGCTCTCTACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS-3UTR GCA 90 bp | CAGAAAGATGAGATCAACTGGGGTAGAGAGCAGAAGCCAGGTCCTGAGCATCTCAATCAGCAGTTGGGCTaGCTCCAAGTTCACTGGATT | + |
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Preference number: 4 (lower is better) Translates to: QKDEINWGREQKPGPEHLNQQLG*LQVHWI Trigger: AATCCAGTGAACTTGGAGGCAGCCCAACTGCTGATT...GAGATGCTCAGGACCTGGCTTCTGCTCTCTACCCCAGTTGATCTCATCTTTCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS-3UTR GCA 90 bp | GAGATCAACTGGGGTAGAGAGCAGAAGCCAGGTCCTGAGCATCTCCTAAAACTGAATCAGCAGTTGGGCTaGCTCCAAGTTCACTGGATT | + |
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Preference number: 4 (lower is better) Translates to: EINWGREQKPGPEHLLKLNQQLG*LQVHWI Trigger: AATCCAGTGAACTTGGAGGCAGCCCAACTGCTGATT...CAGTTTTAGGAGATGCTCAGGACCTGGCTTCTGCTCTCTACCCCAGTTGATCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS-3UTR GCA 90 bp | GGTAGAGAGCAGAAGCCAGGTCCTGAGCATCTCCTAAAACTGTTCCCTGAGACTCAGGTATCACCAGGCTaGTCTCTCTTTTTGGTAATG | + |
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Preference number: 4 (lower is better) Translates to: GREQKPGPEHLLKLFPETQVSPG*SLFLVM Trigger: CATTACCAAAAAGAGAGAGCAGCCTGGTGATACCTG...AGTCTCAGGGAACAGTTTTAGGAGATGCTCAGGACCTGGCTTCTGCTCTCTACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS-3UTR GCA 90 bp | TCCAGAAAGATGAGATCAACTGGGGTAGAGAGCAGAAGCCAGGTCCTGAGCATCCAGGTATCACCAGGCTaGTCTCTCTTTTTGGTAATG | + |
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Preference number: 4 (lower is better) Translates to: SRKMRSTGVESRSQVLSIQVSPG*SLFLVM Trigger: CATTACCAAAAAGAGAGAGCAGCCTGGTGATACCTG...GATGCTCAGGACCTGGCTTCTGCTCTCTACCCCAGTTGATCTCATCTTTCTGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS-3UTR CCA 90 bp | GGTAGAGAGCAGAAGCCAGGTCCTGAGCATCTCCTAAAACTGTTCCCTGAGACTTTTCTAATCAGCAGTTaGGCTGCCTCCAAGTTCACT | + |
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Preference number: 4 (lower is better) Translates to: GREQKPGPEHLLKLFPETFLISS*AASKFT Trigger: AGTGAACTTGGAGGCAGCCCAACTGCTGATTAGAAA...AGTCTCAGGGAACAGTTTTAGGAGATGCTCAGGACCTGGCTTCTGCTCTCTACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS-3UTR CCA 90 bp | GAGATCAACTGGGGTAGAGAGCAGAAGCCAGGTCCTGAGCATCTCCTAAAACTGTTTCTAATCAGCAGTTaGGCTGCCTCCAAGTTCACT | + |
|
Preference number: 4 (lower is better) Translates to: EINWGREQKPGPEHLLKLFLISS*AASKFT Trigger: AGTGAACTTGGAGGCAGCCCAACTGCTGATTAGAAA...CAGTTTTAGGAGATGCTCAGGACCTGGCTTCTGCTCTCTACCCCAGTTGATCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS-3UTR CCA 90 bp | TGGGGTAGAGAGCAGAAGCCAGGTCCTGAGCATCTCCTAAAACTGTTCCCTGAGCAACAAATGGGTTTCTaGAGTGTTCTGCGACTTTTG | + |
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Preference number: 4 (lower is better) Translates to: WGREQKPGPEHLLKLFPEQQMGF*SVLRLL Trigger: CAAAAGTCGCAGAACACTCCAGAAACCCATTTGTTG...CTCAGGGAACAGTTTTAGGAGATGCTCAGGACCTGGCTTCTGCTCTCTACCCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS-3UTR CCA 90 bp | GGTAGAGAGCAGAAGCCAGGTCCTGAGCATCTCCTAAAACTGTTCCCTGAGACTTGGATCTCCAACAAATaGGTTTCTGGAGTGTTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: GREQKPGPEHLLKLFPETWISNK*VSGVFC Trigger: GCAGAACACTCCAGAAACCCATTTGTTGGAGATCCA...AGTCTCAGGGAACAGTTTTAGGAGATGCTCAGGACCTGGCTTCTGCTCTCTACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS-3UTR TCA 90 bp | GCTTCCAGAAAGATGAGATCAACTGGGGTAGAGAGCAGAAGCCAGGTCCTGAGCGGCGGCAAAAGTTCCTaGATTACCATTTTATACGTA | + |
|
Preference number: 4 (lower is better) Translates to: ASRKMRSTGVESRSQVLSGGKSS*ITILYV Trigger: TACGTATAAAATGGTAATTCAGGAACTTTTGCCGCC...GCTCAGGACCTGGCTTCTGCTCTCTACCCCAGTTGATCTCATCTTTCTGGAAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS-3UTR TCA 90 bp | TGGGGTAGAGAGCAGAAGCCAGGTCCTGAGCATCTCCTAAAACTGTTCCCTGAGTGTAATACTGTCCCATaGAATGTGGATCTCCAACAA | + |
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Preference number: 4 (lower is better) Translates to: WGREQKPGPEHLLKLFPECNTVP*NVDLQQ Trigger: TTGTTGGAGATCCACATTTCATGGGACAGTATTACA...CTCAGGGAACAGTTTTAGGAGATGCTCAGGACCTGGCTTCTGCTCTCTACCCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS-3UTR TCA 90 bp | TCCAGAAAGATGAGATCAACTGGGGTAGAGAGCAGAAGCCAGGTCCTGAGCATCCACGTTTTAACTCCCTaGATTCTCTTTCCAGCAAGA | + |
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Preference number: 4 (lower is better) Translates to: SRKMRSTGVESRSQVLSIHVLTP*ILFPAR Trigger: TCTTGCTGGAAAGAGAATTCAGGGAGTTAAAACGTG...GATGCTCAGGACCTGGCTTCTGCTCTCTACCCCAGTTGATCTCATCTTTCTGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000133493.9 |
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| CDS-3UTR GCA 90 bp | GAGATCAACTGGGGTAGAGAGCAGAAGCCAGGTCCTGAGCATCTCCTAAAACTGTTTTTCCTAGCAGTCTaGCACTTTGAGAGTGCAAAC | + |
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Preference number: 4 (lower is better) Translates to: EINWGREQKPGPEHLLKLFFLAV*HFESAN Trigger: GTTTGCACTCTCAAAGTGGCAGACTGCTAGGAAAAA...CAGTTTTAGGAGATGCTCAGGACCTGGCTTCTGCTCTCTACCCCAGTTGATCTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS-3UTR GCA 90 bp | GGTAGAGAGCAGAAGCCAGGTCCTGAGCATCTCCTAAAACTGTTCCCTGAGACTTTTTTCCTAGCAGTCTaGCACTTTGAGAGTGCAAAC | + |
|
Preference number: 4 (lower is better) Translates to: GREQKPGPEHLLKLFPETFFLAV*HFESAN Trigger: GTTTGCACTCTCAAAGTGGCAGACTGCTAGGAAAAA...AGTCTCAGGGAACAGTTTTAGGAGATGCTCAGGACCTGGCTTCTGCTCTCTACC 48% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS-3UTR GCA 90 bp | TGGGGTAGAGAGCAGAAGCCAGGTCCTGAGCATCTCCTAAAACTGTTCCCTGAGCTTCACAAACTGAATTaGGAAGACCTTCAATCTCAG | + |
|
Preference number: 4 (lower is better) Translates to: WGREQKPGPEHLLKLFPELHKLN*EDLQSQ Trigger: CTGAGATTGAAGGTCTTCGCAATTCAGTTTGTGAAG...CTCAGGGAACAGTTTTAGGAGATGCTCAGGACCTGGCTTCTGCTCTCTACCCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000133493.9 |
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| CDS-3UTR GCA 90 bp | TGCTTCCAGAAAGATGAGATCAACTGGGGTAGAGAGCAGAAGCCAGGTCCTGAGAATTCGTGTTCCACTTaGCAGGCTTGTCCAAAAAGT | + |
|
Preference number: 4 (lower is better) Translates to: CFQKDEINWGREQKPGPENSCST*QACPKS Trigger: ACTTTTTGGACAAGCCTGGCAAGTGGAACACGAATT...CTCAGGACCTGGCTTCTGCTCTCTACCCCAGTTGATCTCATCTTTCTGGAAGCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000133493.9 |
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| CDS-3UTR CCA 90 bp | TCCAGAAAGATGAGATCAACTGGGGTAGAGAGCAGAAGCCAGGTCCTGAGCATCCAACAAATGGGTTTCTaGAGTGTTCTGCGACTTTTG | + |
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Preference number: 4 (lower is better) Translates to: SRKMRSTGVESRSQVLSIQQMGF*SVLRLL Trigger: CAAAAGTCGCAGAACACTCCAGAAACCCATTTGTTG...GATGCTCAGGACCTGGCTTCTGCTCTCTACCCCAGTTGATCTCATCTTTCTGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS-3UTR CCA 90 bp | GAGATCAACTGGGGTAGAGAGCAGAAGCCAGGTCCTGAGCATCTCCTAAAACTGCTGTCCCATGAAATGTaGATCTCCAACAAATGGGTT | + |
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Preference number: 4 (lower is better) Translates to: EINWGREQKPGPEHLLKLLSHEM*ISNKWV Trigger: AACCCATTTGTTGGAGATCCACATTTCATGGGACAG...CAGTTTTAGGAGATGCTCAGGACCTGGCTTCTGCTCTCTACCCCAGTTGATCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS-3UTR CCA 90 bp | CAGAAAGATGAGATCAACTGGGGTAGAGAGCAGAAGCCAGGTCCTGAGCATCTCCTGTCCCATGAAATGTaGATCTCCAACAAATGGGTT | + |
|
Preference number: 4 (lower is better) Translates to: QKDEINWGREQKPGPEHLLSHEM*ISNKWV Trigger: AACCCATTTGTTGGAGATCCACATTTCATGGGACAG...GAGATGCTCAGGACCTGGCTTCTGCTCTCTACCCCAGTTGATCTCATCTTTCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS-3UTR TCA 90 bp | GGTAGAGAGCAGAAGCCAGGTCCTGAGCATCTCCTAAAACTGTTCCCTGAGACTGGCGGCAAAAGTTCCTaGATTACCATTTTATACGTA | + |
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Preference number: 4 (lower is better) Translates to: GREQKPGPEHLLKLFPETGGKSS*ITILYV Trigger: TACGTATAAAATGGTAATTCAGGAACTTTTGCCGCC...AGTCTCAGGGAACAGTTTTAGGAGATGCTCAGGACCTGGCTTCTGCTCTCTACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS-3UTR TCA 90 bp | CAGAAAGATGAGATCAACTGGGGTAGAGAGCAGAAGCCAGGTCCTGAGCATCTCTGTAATACTGTCCCATaGAATGTGGATCTCCAACAA | + |
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Preference number: 4 (lower is better) Translates to: QKDEINWGREQKPGPEHLCNTVP*NVDLQQ Trigger: TTGTTGGAGATCCACATTTCATGGGACAGTATTACA...GAGATGCTCAGGACCTGGCTTCTGCTCTCTACCCCAGTTGATCTCATCTTTCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS-3UTR TCA 90 bp | AAAGATGAGATCAACTGGGGTAGAGAGCAGAAGCCAGGTCCTGAGCATCTCCTATTCCCAGGATTCTTTTaGATCATGTTCTTCTGGCCA | + |
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Preference number: 4 (lower is better) Translates to: KDEINWGREQKPGPEHLLFPGFF*IMFFWP Trigger: TGGCCAGAAGAACATGATTCAAAAGAATCCTGGGAA...TAGGAGATGCTCAGGACCTGGCTTCTGCTCTCTACCCCAGTTGATCTCATCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS-3UTR GCA 90 bp | CTATTTTGTGCTTCCAGAAAGATGAGATCAACTGGGGTAGAGAGCAGAAGCCAGGTTTCTGGAGTGTTCTaGGACTTTTGTCGTGGCTAT | + |
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Preference number: 4 (lower is better) Translates to: LFCASRKMRSTGVESRSQVSGVF*DFCRGY Trigger: ATAGCCACGACAAAAGTCGCAGAACACTCCAGAAAC...CTGGCTTCTGCTCTCTACCCCAGTTGATCTCATCTTTCTGGAAGCACAAAATAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS-3UTR TCA 90 bp | CTATTTTGTGCTTCCAGAAAGATGAGATCAACTGGGGTAGAGAGCAGAAGCCAGTTCCCAGGATTCTTTTaGATCATGTTCTTCTGGCCA | + |
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Preference number: 4 (lower is better) Translates to: LFCASRKMRSTGVESRSQFPGFF*IMFFWP Trigger: TGGCCAGAAGAACATGATTCAAAAGAATCCTGGGAA...CTGGCTTCTGCTCTCTACCCCAGTTGATCTCATCTTTCTGGAAGCACAAAATAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS-3UTR CAA 90 bp | GCTTCCAGAAAGATGAGATCAACTGGGGTAGAGAGCAGAAGCCAGGTCCTGAGCGGCTGCTCTCTCTTTTaGGTAATGCTGGCGGCAAAA | + |
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Preference number: 5 (lower is better) Translates to: ASRKMRSTGVESRSQVLSGCSLF*VMLAAK Trigger: TTTTGCCGCCAGCATTACCAAAAAGAGAGAGCAGCC...GCTCAGGACCTGGCTTCTGCTCTCTACCCCAGTTGATCTCATCTTTCTGGAAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS-3UTR CAA 90 bp | TGCTTCCAGAAAGATGAGATCAACTGGGGTAGAGAGCAGAAGCCAGGTCCTGAGGGCTGCTCTCTCTTTTaGGTAATGCTGGCGGCAAAA | + |
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Preference number: 5 (lower is better) Translates to: CFQKDEINWGREQKPGPEGCSLF*VMLAAK Trigger: TTTTGCCGCCAGCATTACCAAAAAGAGAGAGCAGCC...CTCAGGACCTGGCTTCTGCTCTCTACCCCAGTTGATCTCATCTTTCTGGAAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS-3UTR CAA 90 bp | AAAGATGAGATCAACTGGGGTAGAGAGCAGAAGCCAGGTCCTGAGCATCTCCTAATTTCTAATCAGCAGTaGGGCTGCCTCCAAGTTCAC | + |
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Preference number: 5 (lower is better) Translates to: KDEINWGREQKPGPEHLLISNQQ*GCLQVH Trigger: GTGAACTTGGAGGCAGCCCAACTGCTGATTAGAAAT...TAGGAGATGCTCAGGACCTGGCTTCTGCTCTCTACCCCAGTTGATCTCATCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS TCA 90 bp | GGTCCAGGAGACCAGGTGGTCTGCTTCCTCTTCCCAGGATTCTTTTaGATCATGTTCTTCTGGCCACTCCTGAGGTATTTGATAAATCCT | + |
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Preference number: 5 (lower is better) Translates to: GPGDQVVCFLFPGFF*IMFFWPLLRYLINP Trigger: AGGATTTATCAAATACCTCAGGAGTGGCCAGAAGAACATGATTCAAAAGAATCCTGGGAAGAGGAAGCAGACCACCTGGTCTCCTGGACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS-3UTR CAA 90 bp | GGTAGAGAGCAGAAGCCAGGTCCTGAGCATCTCCTAAAACTGTTCCCTGAGACTATTCTGCCGATCCTGTaGCTTCCATTTGTAATACTG | + |
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Preference number: 5 (lower is better) Translates to: GREQKPGPEHLLKLFPETILPIL*LPFVIL Trigger: CAGTATTACAAATGGAAGCAACAGGATCGGCAGAAT...AGTCTCAGGGAACAGTTTTAGGAGATGCTCAGGACCTGGCTTCTGCTCTCTACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS-3UTR CAA 90 bp | TGCTTCCAGAAAGATGAGATCAACTGGGGTAGAGAGCAGAAGCCAGGTCCTGAGCCACTCCTGAGGTATTaGATAAATCCTTGGTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: CFQKDEINWGREQKPGPEPLLRY*INPWFF Trigger: GAAGAACCAAGGATTTATCAAATACCTCAGGAGTGG...CTCAGGACCTGGCTTCTGCTCTCTACCCCAGTTGATCTCATCTTTCTGGAAGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS CCA 90 bp | CGTTGTCAAAGTACTCATAGTTCAAAGATTCTTCATCAAGACCATTaGTCCAGGAGACCAGGTGGTCTGCTTCCTCTTCCCAGGATTCTT | + |
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Preference number: 5 (lower is better) Translates to: RCQSTHSSKILHQDH*SRRPGGLLPLPRIL Trigger: AAGAATCCTGGGAAGAGGAAGCAGACCACCTGGTCTCCTGGACCAATGGTCTTGATGAAGAATCTTTGAACTATGAGTACTTTGACAACG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS-3UTR CAA 90 bp | TCTATTTTGTGCTTCCAGAAAGATGAGATCAACTGGGGTAGAGAGCAGAAGCCAATTTCTAATCAGCAGTaGGGCTGCCTCCAAGTTCAC | + |
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Preference number: 5 (lower is better) Translates to: SILCFQKDEINWGREQKPISNQQ*GCLQVH Trigger: GTGAACTTGGAGGCAGCCCAACTGCTGATTAGAAAT...TGGCTTCTGCTCTCTACCCCAGTTGATCTCATCTTTCTGGAAGCACAAAATAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS-3UTR CAA 90 bp | AAAGATGAGATCAACTGGGGTAGAGAGCAGAAGCCAGGTCCTGAGCATCTCCTAGTAGATACCTATCACTaGGTTGTAGTGATTGCTCTT | + |
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Preference number: 5 (lower is better) Translates to: KDEINWGREQKPGPEHLLVDTYH*VVVIAL Trigger: AAGAGCAATCACTACAACCAAGTGATAGGTATCTAC...TAGGAGATGCTCAGGACCTGGCTTCTGCTCTCTACCCCAGTTGATCTCATCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS-3UTR CAA 90 bp | CTATTTTGTGCTTCCAGAAAGATGAGATCAACTGGGGTAGAGAGCAGAAGCCAGCTTCCCAGGATTCTTTaGAATCATGTTCTTCTGGCC | + |
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Preference number: 5 (lower is better) Translates to: LFCASRKMRSTGVESRSQLPRIL*NHVLLA Trigger: GGCCAGAAGAACATGATTCAAAAGAATCCTGGGAAG...CTGGCTTCTGCTCTCTACCCCAGTTGATCTCATCTTTCTGGAAGCACAAAATAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS TCA 90 bp | CTTGATTCTGCCGATCCTGTTGCTTCCATTTGTAATACTGTCCCATaGAATGTGGATCTCCAACAAATGGGTTTCTGGAGTGTTCTGCGA | + |
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Preference number: 5 (lower is better) Translates to: LDSADPVASICNTVP*NVDLQQMGFWSVLR Trigger: TCGCAGAACACTCCAGAAACCCATTTGTTGGAGATCCACATTTCATGGGACAGTATTACAAATGGAAGCAACAGGATCGGCAGAATCAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS-3UTR CAA 90 bp | TCTATTTTGTGCTTCCAGAAAGATGAGATCAACTGGGGTAGAGAGCAGAAGCCACCACTCCTGAGGTATTaGATAAATCCTTGGTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: SILCFQKDEINWGREQKPPLLRY*INPWFF Trigger: GAAGAACCAAGGATTTATCAAATACCTCAGGAGTGG...TGGCTTCTGCTCTCTACCCCAGTTGATCTCATCTTTCTGGAAGCACAAAATAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS-3UTR CAA 90 bp | TCTATTTTGTGCTTCCAGAAAGATGAGATCAACTGGGGTAGAGAGCAGAAGCCAGTAGATACCTATCACTaGGTTGTAGTGATTGCTCTT | + |
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Preference number: 5 (lower is better) Translates to: SILCFQKDEINWGREQKPVDTYH*VVVIAL Trigger: AAGAGCAATCACTACAACCAAGTGATAGGTATCTAC...TGGCTTCTGCTCTCTACCCCAGTTGATCTCATCTTTCTGGAAGCACAAAATAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS TCA 90 bp | TTAGGACAGGGTAAGAAAGCAACATCTGTAGATCAAGTAAGATGCTaGGTACTGTATAATTCGTGTTCCACTTGCCAGGCTTGTCCAAAA | + |
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Preference number: 5 (lower is better) Translates to: LGQGKKATSVDQVRC*VLYNSCSTCQACPK Trigger: TTTTGGACAAGCCTGGCAAGTGGAACACGAATTATACAGTACTCAGCATCTTACTTGATCTACAGATGTTGCTTTCTTACCCTGTCCTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133493.9 |
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| CDS-3UTR CAA 90 bp | TTTCTATTTTGTGCTTCCAGAAAGATGAGATCAACTGGGGTAGAGAGCAGAAGCTTTGGAGGAACAGAATaGTACTCTTGTGAAAACTCT | + |
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Preference number: 5 (lower is better) Translates to: FLFCASRKMRSTGVESRSFGGTE*YSCENS Trigger: AGAGTTTTCACAAGAGTACAATTCTGTTCCTCCAAA...GCTTCTGCTCTCTACCCCAGTTGATCTCATCTTTCTGGAAGCACAAAATAGAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000133493.9 |
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| CDS GCA 90 bp | AAAACTCTAATGTCAGGTAGAAAACAAGTCCTTCACAAACTGAATTaGGAAGACCTTCAATCTCAGCTTTCCAATTCATCATATCATCAC | + |
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Preference number: 5 (lower is better) Translates to: KTLMSGRKQVLHKLN*EDLQSQLSNSSYHH Trigger: GTGATGATATGATGAATTGGAAAGCTGAGATTGAAGGTCTTCGCAATTCAGTTTGTGAAGGACTTGTTTTCTACCTGACATTAGAGTTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000133493.9 |
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| CDS CCA 90 bp | TTCTTCTTCTTCTATTTCATATTCAAAAGAAAGTTCACTCGGAGATaGGTAGATACCTATCACTTGGTTGTAGTGATTGCTCTTTTCCTG | + |
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Preference number: 5 (lower is better) Translates to: FFFFYFIFKRKFTRR*VDTYHLVVVIALFL Trigger: CAGGAAAAGAGCAATCACTACAACCAAGTGATAGGTATCTACCCATCTCCGAGTGAACTTTCTTTTGAATATGAAATAGAAGAAGAAGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS CCA 72 bp | AGTACTCATAGTTCAAAGATTCTTCATCAAGACCATTaGTCCAGGAGACCAGGTGGTCTGCTTCCTCTTCCC | + |
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Preference number: 6 (lower is better) Translates to: STHSSKILHQDH*SRRPGGLLPLP Trigger: GGGAAGAGGAAGCAGACCACCTGGTCTCCTGGACCAATGGTCTTGATGAAGAATCTTTGAACTATGAGTACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS CCA 72 bp | GTAATACTGTCCCATGAAATGTGGATCTCCAACAAATaGGTTTCTGGAGTGTTCTGCGACTTTTGTCGTGGC | + |
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Preference number: 6 (lower is better) Translates to: VILSHEMWISNK*VSGVFCDFCRG Trigger: GCCACGACAAAAGTCGCAGAACACTCCAGAAACCCATTTGTTGGAGATCCACATTTCATGGGACAGTATTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS TCA 72 bp | GCCGATCCTGTTGCTTCCATTTGTAATACTGTCCCATaGAATGTGGATCTCCAACAAATGGGTTTCTGGAGT | + |
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Preference number: 6 (lower is better) Translates to: ADPVASICNTVP*NVDLQQMGFWS Trigger: ACTCCAGAAACCCATTTGTTGGAGATCCACATTTCATGGGACAGTATTACAAATGGAAGCAACAGGATCGGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS CAA 72 bp | AGAAAGTTCACTCGGAGATGGGTAGATACCTATCACTaGGTTGTAGTGATTGCTCTTTTCCTGAGCCATTAT | + |
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Preference number: 6 (lower is better) Translates to: RKFTRRWVDTYH*VVVIALFLSHY Trigger: ATAATGGCTCAGGAAAAGAGCAATCACTACAACCAAGTGATAGGTATCTACCCATCTCCGAGTGAACTTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS GCA 72 bp | ATGTCAGGTAGAAAACAAGTCCTTCACAAACTGAATTaGGAAGACCTTCAATCTCAGCTTTCCAATTCATCA | + |
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Preference number: 6 (lower is better) Translates to: MSGRKQVLHKLN*EDLQSQLSNSS Trigger: TGATGAATTGGAAAGCTGAGATTGAAGGTCTTCGCAATTCAGTTTGTGAAGGACTTGTTTTCTACCTGACAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133493.9 |
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| CDS CCA 72 bp | TTCTTCTGGCCACTCCTGAGGTATTTGATAAATCCTTaGTTCTTCTTCTTCTTCTTCTTTTTCTTCTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: FFWPLLRYLINP*FFFFFFFFFFF Trigger: GAAGAAGAAGAAAAAGAAGAAGAAGAAGAAGAACCAAGGATTTATCAAATACCTCAGGAGTGGCCAGAAGAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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| CDS CCA 72 bp | TTCTATTTCATATTCAAAAGAAAGTTCACTCGGAGATaGGTAGATACCTATCACTTGGTTGTAGTGATTGCT | + |
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Preference number: 6 (lower is better) Translates to: FYFIFKRKFTRR*VDTYHLVVVIA Trigger: AGCAATCACTACAACCAAGTGATAGGTATCTACCCATCTCCGAGTGAACTTTCTTTTGAATATGAAATAGAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092730.5 ENSMUST00000133493.9 |
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