Pregenerated sensors for UBE2T (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026429Ensembl transcript IDs: ENSMUST00000027687.8, ENSMUST00000188177.2, ENSMUST00000223886.2
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTTTCCATTCCTCCTAATGGCCTGGCCTTCCTTTTCTGTGTGGAATaGCTTTCCTCAGAGTCACCAACTTCTGATGAGGTGCCTAGCTCC | + |
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Preference number: 1 (lower is better) Translates to: FSIPPNGLAFLFCVE*LSSESPTSDEVPSS Trigger: GGAGCTAGGCACCTCATCAGAAGTTGGTGACTCTGAGGAAAGCCATTCCACACAGAAAAGGAAGGCCAGGCCATTAGGAGGAATGGAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000223886.2 |
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| 3UTR TCA 90 bp | TCAGCCATTAGTGGGTCATCAGGATTGGGTTCTGCCATGAGCAGCTaGATAGAGGTCAATACAGTGGCAATGTTGAGGGATGGTCTCCAT | + |
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Preference number: 1 (lower is better) Translates to: SAISGSSGLGSAMSS*IEVNTVAMLRDGLH Trigger: ATGGAGACCATCCCTCAACATTGCCACTGTATTGACCTCTATTCAGCTGCTCATGGCAGAACCCAATCCTGATGACCCACTAATGGCTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223886.2 |
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| 3UTR TCA 90 bp | GAGGTGCCTAGCTCCTCTTCATCAGCCTTTTGTTTCTGTCTTGCATaGGCCTCTGTCCACTGCTTGGCTTTCTTGAGAAAAGCTATCTTG | + |
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Preference number: 1 (lower is better) Translates to: EVPSSSSSAFCFCLA*ASVHCLAFLRKAIL Trigger: CAAGATAGCTTTTCTCAAGAAAGCCAAGCAGTGGACAGAGGCTCATGCAAGACAGAAACAAAAGGCTGATGAAGAGGAGCTAGGCACCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000223886.2 |
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| 3UTR GCA 90 bp | TCTGTGTGGAATGGCTTTCCTCAGAGTCACCAACTTCTGATGAGGTaGCTAGCTCCTCTTCATCAGCCTTTTGTTTCTGTCTTGCATGAG | + |
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Preference number: 1 (lower is better) Translates to: SVWNGFPQSHQLLMR*LAPLHQPFVSVLHE Trigger: CTCATGCAAGACAGAAACAAAAGGCTGATGAAGAGGAGCTAGGCACCTCATCAGAAGTTGGTGACTCTGAGGAAAGCCATTCCACACAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000223886.2 |
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| 3UTR-3UTR CCA 90 bp | TGGGTCATCAGGATTGGGTTCTGCCATGAGCAGCTGAATAGAGGTCAATACAGTGGCAATGTTGAGGGATaGTCTCCATGCACCCTTTGG | + |
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Preference number: 2 (lower is better) Translates to: WVIRIGFCHEQLNRGQYSGNVEG*SPCTLW Trigger: CCAAAGGGTGCATGGAGACCATCCCTCAACATTGCC...ACTGTATTGACCTCTATTCAGCTGCTCATGGCAGAACCCAATCCTGATGACCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223886.2 |
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| 3UTR-3UTR TCA 90 bp | TTTTCCATTCCTCCTAATGGCCTGGCCTTCCTTTTCTGTGTGGAATGGCTTTCCTCTGCCATGAGCAGCTaGATAGAGGTCAATACAGTG | + |
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Preference number: 2 (lower is better) Translates to: FSIPPNGLAFLFCVEWLSSAMSS*IEVNTV Trigger: CACTGTATTGACCTCTATTCAGCTGCTCATGGCAGA...GGAAAGCCATTCCACACAGAAAAGGAAGGCCAGGCCATTAGGAGGAATGGAAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000223886.2 |
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| 3UTR-3UTR TCA 90 bp | GAGCAGCTGAATAGAGGTCAATACAGTGGCAATGTTGAGGGATGGTCTCCATGCCCTTTGGTGGCAATTTaGGAATATCTAGACAAATCC | + |
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Preference number: 2 (lower is better) Translates to: EQLNRGQYSGNVEGWSPCPLVAI*EYLDKS Trigger: GGATTTGTCTAGATATTCTCAAATTGCCACCAAAGG...GCATGGAGACCATCCCTCAACATTGCCACTGTATTGACCTCTATTCAGCTGCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223886.2 |
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| 3UTR TCA 72 bp | AGTGGGTCATCAGGATTGGGTTCTGCCATGAGCAGCTaGATAGAGGTCAATACAGTGGCAATGTTGAGGGAT | + |
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Preference number: 3 (lower is better) Translates to: SGSSGLGSAMSS*IEVNTVAMLRD Trigger: ATCCCTCAACATTGCCACTGTATTGACCTCTATTCAGCTGCTCATGGCAGAACCCAATCCTGATGACCCACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223886.2 |
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| 3UTR GCA 72 bp | AATGGCTTTCCTCAGAGTCACCAACTTCTGATGAGGTaGCTAGCTCCTCTTCATCAGCCTTTTGTTTCTGTC | + |
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Preference number: 3 (lower is better) Translates to: NGFPQSHQLLMR*LAPLHQPFVSV Trigger: GACAGAAACAAAAGGCTGATGAAGAGGAGCTAGGCACCTCATCAGAAGTTGGTGACTCTGAGGAAAGCCATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000223886.2 |
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| 3UTR-3UTR CAA 90 bp | CATGGCAGAATTCGTAAACATACAAGGTCTTTTGTAAGGATACAAACATTTGTCAATACAGTGGCAATGTaGAGGGATGGTCTCCATGCA | + |
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Preference number: 3 (lower is better) Translates to: HGRIRKHTRSFVRIQTFVNTVAM*RDGLHA Trigger: TGCATGGAGACCATCCCTCAACATTGCCACTGTATT...GACAAATGTTTGTATCCTTACAAAAGACCTTGTATGTTTACGAATTCTGCCATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000223886.2 |
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| CDS-3UTR TCA 90 bp | TTCATCAGCCTTTTGTTTCTGTCTTGCATGAGCCTCTGTCCACTGCTTGGCTTTCGCAAATCAGCCACTTaGTCCTTTTCCTGCCAGCAC | + |
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Preference number: 4 (lower is better) Translates to: FISLLFLSCMSLCPLLGFRKSAT*SFSCQH Trigger: GTGCTGGCAGGAAAAGGATCAAGTGGCTGATTTGCG...AAAGCCAAGCAGTGGACAGAGGCTCATGCAAGACAGAAACAAAAGGCTGATGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000223886.2 |
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| 3UTR CAA 72 bp | TTGAGGGATGGTCTCCATGCACCCTTTGGTGGCAATTaGAGAATATCTAGACAAATCCTTCCACTAGAATCA | + |
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Preference number: 4 (lower is better) Translates to: LRDGLHAPFGGN*RISRQILPLES Trigger: TGATTCTAGTGGAAGGATTTGTCTAGATATTCTCAAATTGCCACCAAAGGGTGCATGGAGACCATCCCTCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223886.2 |
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| CDS-3UTR TCA 90 bp | CATGGCAGAATTCGTAAACATACAAGGTCTTTTGTAAGGATACAAACATTTGTCCGCAAATCAGCCACTTaGTCCTTTTCCTGCCAGCAC | + |
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Preference number: 4 (lower is better) Translates to: HGRIRKHTRSFVRIQTFVRKSAT*SFSCQH Trigger: GTGCTGGCAGGAAAAGGATCAAGTGGCTGATTTGCG...GACAAATGTTTGTATCCTTACAAAAGACCTTGTATGTTTACGAATTCTGCCATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027687.8 ENSMUST00000223886.2 |
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| CDS-3UTR CCA 90 bp | CTGCATGGCAGAATTCGTAAACATACAAGGTCTTTTGTAAGGATACAAACATTTGGCAATGTTGAGGGATaGTCTCCATGCACCCTTTGG | + |
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Preference number: 4 (lower is better) Translates to: LHGRIRKHTRSFVRIQTFGNVEG*SPCTLW Trigger: CCAAAGGGTGCATGGAGACCATCCCTCAACATTGCC...AAATGTTTGTATCCTTACAAAAGACCTTGTATGTTTACGAATTCTGCCATGCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027687.8 |
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| CDS-3UTR CCA 90 bp | AACAAACTATCCTTAAAGAATCGCTGCATGGCAGAATTCGTAAACATACAAGGTTTCCTCCTAATGGCCTaGCCTTCCTTTTCTGTGTGG | + |
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Preference number: 4 (lower is better) Translates to: NKLSLKNRCMAEFVNIQGFLLMA*PSFSVW Trigger: CCACACAGAAAAGGAAGGCCAGGCCATTAGGAGGAA...ACCTTGTATGTTTACGAATTCTGCCATGCAGCGATTCTTTAAGGATAGTTTGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027687.8 ENSMUST00000188177.2 |
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| CDS-3UTR TCA 90 bp | CATGGCAGAATTCGTAAACATACAAGGTCTTTTGTAAGGATACAAACATTTGTCATACAGTGGCAATGTTaGGGGATGGTCTCCATGCAC | + |
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Preference number: 4 (lower is better) Translates to: HGRIRKHTRSFVRIQTFVIQWQC*GMVSMH Trigger: GTGCATGGAGACCATCCCTCAACATTGCCACTGTAT...GACAAATGTTTGTATCCTTACAAAAGACCTTGTATGTTTACGAATTCTGCCATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027687.8 |
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| CDS-3UTR TCA 90 bp | AACAAACTATCCTTAAAGAATCGCTGCATGGCAGAATTCGTAAACATACAAGGTTCTGCCATGAGCAGCTaGATAGAGGTCAATACAGTG | + |
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Preference number: 4 (lower is better) Translates to: NKLSLKNRCMAEFVNIQGSAMSS*IEVNTV Trigger: CACTGTATTGACCTCTATTCAGCTGCTCATGGCAGA...ACCTTGTATGTTTACGAATTCTGCCATGCAGCGATTCTTTAAGGATAGTTTGTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027687.8 |
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| CDS-3UTR GCA 90 bp | CATGGCAGAATTCGTAAACATACAAGGTCTTTTGTAAGGATACAAACATTTGTCTCGATGGCTAGCATGTaGAGTTCCTTCTTCAGGCGT | + |
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Preference number: 4 (lower is better) Translates to: HGRIRKHTRSFVRIQTFVSMASM*SSFFRR Trigger: ACGCCTGAAGAAGGAACTGCACATGCTAGCCATCGA...GACAAATGTTTGTATCCTTACAAAAGACCTTGTATGTTTACGAATTCTGCCATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027687.8 ENSMUST00000223886.2 |
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| CDS-3UTR GCA 90 bp | CTGCATGGCAGAATTCGTAAACATACAAGGTCTTTTGTAAGGATACAAACATTTTCGATGGCTAGCATGTaGAGTTCCTTCTTCAGGCGT | + |
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Preference number: 4 (lower is better) Translates to: LHGRIRKHTRSFVRIQTFSMASM*SSFFRR Trigger: ACGCCTGAAGAAGGAACTGCACATGCTAGCCATCGA...AAATGTTTGTATCCTTACAAAAGACCTTGTATGTTTACGAATTCTGCCATGCAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027687.8 ENSMUST00000223886.2 |
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| CDS-3UTR GCA 90 bp | CATGGCAGAATTCGTAAACATACAAGGTCTTTTGTAAGGATACAAACATTTGTCGAGGGATGGTCTCCATaGACCCTTTGGTGGCAATTT | + |
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Preference number: 4 (lower is better) Translates to: HGRIRKHTRSFVRIQTFVEGWSP*TLWWQF Trigger: AAATTGCCACCAAAGGGTGCATGGAGACCATCCCTC...GACAAATGTTTGTATCCTTACAAAAGACCTTGTATGTTTACGAATTCTGCCATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027687.8 |
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| CDS-3UTR GCA 90 bp | AACAAACTATCCTTAAAGAATCGCTGCATGGCAGAATTCGTAAACATACAAGGTATCAGGATTGGGTTCTaGCATGAGCAGCTGAATAGA | + |
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Preference number: 4 (lower is better) Translates to: NKLSLKNRCMAEFVNIQGIRIGF*HEQLNR Trigger: TCTATTCAGCTGCTCATGGCAGAACCCAATCCTGAT...ACCTTGTATGTTTACGAATTCTGCCATGCAGCGATTCTTTAAGGATAGTTTGTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027687.8 |
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| CDS-3UTR GCA 90 bp | AACAAACTATCCTTAAAGAATCGCTGCATGGCAGAATTCGTAAACATACAAGGTCTTTTGTTTCTGTCTTaGATGAGCCTCTGTCCACTG | + |
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Preference number: 4 (lower is better) Translates to: NKLSLKNRCMAEFVNIQGLLFLS*MSLCPL Trigger: CAGTGGACAGAGGCTCATGCAAGACAGAAACAAAAG...ACCTTGTATGTTTACGAATTCTGCCATGCAGCGATTCTTTAAGGATAGTTTGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027687.8 |
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| CDS-3UTR CCA 90 bp | AACAAACTATCCTTAAAGAATCGCTGCATGGCAGAATTCGTAAACATACAAGGTCTGTGGAGGTTCAAATaGGTACCTCTCAGGAATGAT | + |
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Preference number: 4 (lower is better) Translates to: NKLSLKNRCMAEFVNIQGLWRFK*VPLRND Trigger: ATCATTCCTGAGAGGTACCCATTTGAACCTCCACAG...ACCTTGTATGTTTACGAATTCTGCCATGCAGCGATTCTTTAAGGATAGTTTGTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027687.8 |
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| CDS-3UTR CCA 90 bp | CATGGCAGAATTCGTAAACATACAAGGTCTTTTGTAAGGATACAAACATTTGTCCTTTTCTGTGTGGAATaGCTTTCCTCAGAGTCACCA | + |
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Preference number: 4 (lower is better) Translates to: HGRIRKHTRSFVRIQTFVLFCVE*LSSESP Trigger: TGGTGACTCTGAGGAAAGCCATTCCACACAGAAAAG...GACAAATGTTTGTATCCTTACAAAAGACCTTGTATGTTTACGAATTCTGCCATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027687.8 ENSMUST00000188177.2 |
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| CDS-3UTR CCA 90 bp | CTGCATGGCAGAATTCGTAAACATACAAGGTCTTTTGTAAGGATACAAACATTTCTTTTCTGTGTGGAATaGCTTTCCTCAGAGTCACCA | + |
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Preference number: 4 (lower is better) Translates to: LHGRIRKHTRSFVRIQTFLFCVE*LSSESP Trigger: TGGTGACTCTGAGGAAAGCCATTCCACACAGAAAAG...AAATGTTTGTATCCTTACAAAAGACCTTGTATGTTTACGAATTCTGCCATGCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027687.8 ENSMUST00000188177.2 |
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| CDS-3UTR CCA 90 bp | CATGGCAGAATTCGTAAACATACAAGGTCTTTTGTAAGGATACAAACATTTGTCTCTCCATGCACCCTTTaGTGGCAATTTGAGAATATC | + |
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Preference number: 4 (lower is better) Translates to: HGRIRKHTRSFVRIQTFVSPCTL*WQFENI Trigger: GATATTCTCAAATTGCCACCAAAGGGTGCATGGAGA...GACAAATGTTTGTATCCTTACAAAAGACCTTGTATGTTTACGAATTCTGCCATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027687.8 |
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| CDS-3UTR CCA 90 bp | AACAAACTATCCTTAAAGAATCGCTGCATGGCAGAATTCGTAAACATACAAGGTCTCTTCATCAGCCTTTaGTGGCAATTTGAGAATATC | + |
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Preference number: 4 (lower is better) Translates to: NKLSLKNRCMAEFVNIQGLFISL*WQFENI Trigger: GATATTCTCAAATTGCCACCAAAGGCTGATGAAGAG...ACCTTGTATGTTTACGAATTCTGCCATGCAGCGATTCTTTAAGGATAGTTTGTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188177.2 |
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| CDS-3UTR TCA 90 bp | CTGCATGGCAGAATTCGTAAACATACAAGGTCTTTTGTAAGGATACAAACATTTCCTTTGGTGGCAATTTaGGAATATCTAGACAAATCC | + |
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Preference number: 4 (lower is better) Translates to: LHGRIRKHTRSFVRIQTFPLVAI*EYLDKS Trigger: GGATTTGTCTAGATATTCTCAAATTGCCACCAAAGG...AAATGTTTGTATCCTTACAAAAGACCTTGTATGTTTACGAATTCTGCCATGCAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027687.8 ENSMUST00000188177.2 |
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| CDS-3UTR TCA 90 bp | CATGGCAGAATTCGTAAACATACAAGGTCTTTTGTAAGGATACAAACATTTGTCCCTTTGGTGGCAATTTaGGAATATCTAGACAAATCC | + |
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Preference number: 4 (lower is better) Translates to: HGRIRKHTRSFVRIQTFVPLVAI*EYLDKS Trigger: GGATTTGTCTAGATATTCTCAAATTGCCACCAAAGG...GACAAATGTTTGTATCCTTACAAAAGACCTTGTATGTTTACGAATTCTGCCATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027687.8 ENSMUST00000188177.2 |
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| CDS-3UTR TCA 90 bp | CTGCATGGCAGAATTCGTAAACATACAAGGTCTTTTGTAAGGATACAAACATTTACTGCTTGGCTTTCTTaGGAAAAGCTATCTTGTTAT | + |
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Preference number: 4 (lower is better) Translates to: LHGRIRKHTRSFVRIQTFTAWLS*EKLSCY Trigger: ATAACAAGATAGCTTTTCTCAAGAAAGCCAAGCAGT...AAATGTTTGTATCCTTACAAAAGACCTTGTATGTTTACGAATTCTGCCATGCAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027687.8 |
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| CDS TCA 90 bp | TTTGAGCTCGCAAATCAGCCACTTGATCCTTTTCCTGCCAGCACGTaGTGCCCGGGGGAGGTTCGATGGCTAGCATGTGCAGTTCCTTCT | + |
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Preference number: 5 (lower is better) Translates to: FELANQPLDPFPAST*CPGEVRWLACAVPS Trigger: AGAAGGAACTGCACATGCTAGCCATCGAACCTCCCCCGGGCATCACGTGCTGGCAGGAAAAGGATCAAGTGGCTGATTTGCGAGCTCAAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027687.8 |
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| CDS-3UTR CAA 90 bp | TTCATCAGCCTTTTGTTTCTGTCTTGCATGAGCCTCTGTCCACTGCTTGGCTTTTCGCAAATCAGCCACTaGATCCTTTTCCTGCCAGCA | + |
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Preference number: 5 (lower is better) Translates to: FISLLFLSCMSLCPLLGFSQISH*ILFLPA Trigger: TGCTGGCAGGAAAAGGATCAAGTGGCTGATTTGCGA...AAAGCCAAGCAGTGGACAGAGGCTCATGCAAGACAGAAACAAAAGGCTGATGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000223886.2 |
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| CDS-3UTR CAA 90 bp | CTGCATGGCAGAATTCGTAAACATACAAGGTCTTTTGTAAGGATACAAACATTTAGTGGGTCATCAGGATaGGGTTCTGCCATGAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: LHGRIRKHTRSFVRIQTFSGSSG*GSAMSS Trigger: GCTGCTCATGGCAGAACCCAATCCTGATGACCCACT...AAATGTTTGTATCCTTACAAAAGACCTTGTATGTTTACGAATTCTGCCATGCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027687.8 |
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| CDS-3UTR CAA 90 bp | CATGGCAGAATTCGTAAACATACAAGGTCTTTTGTAAGGATACAAACATTTGTCTCGCAAATCAGCCACTaGATCCTTTTCCTGCCAGCA | + |
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Preference number: 5 (lower is better) Translates to: HGRIRKHTRSFVRIQTFVSQISH*ILFLPA Trigger: TGCTGGCAGGAAAAGGATCAAGTGGCTGATTTGCGA...GACAAATGTTTGTATCCTTACAAAAGACCTTGTATGTTTACGAATTCTGCCATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027687.8 ENSMUST00000223886.2 |
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| CDS-3UTR CAA 90 bp | CATGGCAGAATTCGTAAACATACAAGGTCTTTTGTAAGGATACAAACATTTGTCCTCTTCATCAGCCTTTaGTTTCTGTCTTGCATGAGC | + |
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Preference number: 5 (lower is better) Translates to: HGRIRKHTRSFVRIQTFVLFISL*FLSCMS Trigger: GCTCATGCAAGACAGAAACAAAAGGCTGATGAAGAG...GACAAATGTTTGTATCCTTACAAAAGACCTTGTATGTTTACGAATTCTGCCATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027687.8 |
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| CDS-3UTR CAA 90 bp | AACAAACTATCCTTAAAGAATCGCTGCATGGCAGAATTCGTAAACATACAAGGTTGTTTGGATGATAGATaGGAGTTAGAAATCGGACCT | + |
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Preference number: 5 (lower is better) Translates to: NKLSLKNRCMAEFVNIQGCLDDR*ELEIGP Trigger: AGGTCCGATTTCTAACTCCAATCTATCATCCAAACA...ACCTTGTATGTTTACGAATTCTGCCATGCAGCGATTCTTTAAGGATAGTTTGTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027687.8 |
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| CDS-3UTR CAA 90 bp | AACAAACTATCCTTAAAGAATCGCTGCATGGCAGAATTCGTAAACATACAAGGTCCCTTTGGTGGCAATTaGAGAATATCTAGACAAATC | + |
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Preference number: 5 (lower is better) Translates to: NKLSLKNRCMAEFVNIQGPFGGN*RISRQI Trigger: GATTTGTCTAGATATTCTCAAATTGCCACCAAAGGG...ACCTTGTATGTTTACGAATTCTGCCATGCAGCGATTCTTTAAGGATAGTTTGTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027687.8 |
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| CDS-3UTR CAA 90 bp | AACAAACTATCCTTAAAGAATCGCTGCATGGCAGAATTCGTAAACATACAAGGTCACTGCTTGGCTTTCTaGAGAAAAGCTATCTTGTTA | + |
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Preference number: 5 (lower is better) Translates to: NKLSLKNRCMAEFVNIQGHCLAF*RKAILL Trigger: TAACAAGATAGCTTTTCTCAAGAAAGCCAAGCAGTG...ACCTTGTATGTTTACGAATTCTGCCATGCAGCGATTCTTTAAGGATAGTTTGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027687.8 |
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| CDS-3UTR CAA 90 bp | CTGCATGGCAGAATTCGTAAACATACAAGGTCTTTTGTAAGGATACAAACATTTGCCTTTGGTGGCAATTaGAGAATATCTAGACAAATC | + |
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Preference number: 5 (lower is better) Translates to: LHGRIRKHTRSFVRIQTFAFGGN*RISRQI Trigger: GATTTGTCTAGATATTCTCAAATTGCCACCAAAGGC...AAATGTTTGTATCCTTACAAAAGACCTTGTATGTTTACGAATTCTGCCATGCAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188177.2 |
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| CDS TCA 72 bp | GCAAATCAGCCACTTGATCCTTTTCCTGCCAGCACGTaGTGCCCGGGGGAGGTTCGATGGCTAGCATGTGCA | + |
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Preference number: 6 (lower is better) Translates to: ANQPLDPFPAST*CPGEVRWLACA Trigger: TGCACATGCTAGCCATCGAACCTCCCCCGGGCATCACGTGCTGGCAGGAAAAGGATCAAGTGGCTGATTTGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027687.8 ENSMUST00000223886.2 |
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| CDS GCA 72 bp | AATGGCTTTCCTCAGAGTCACCAACTTCTGATGAGGTaGCTAGCTCCTCTTCATCAGCCTTTGGTGGCAATT | + |
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Preference number: 6 (lower is better) Translates to: NGFPQSHQLLMR*LAPLHQPLVAI Trigger: AATTGCCACCAAAGGCTGATGAAGAGGAGCTAGGCACCTCATCAGAAGTTGGTGACTCTGAGGAAAGCCATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188177.2 |
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| CDS CAA 90 bp | TCTGATGAGGTGCCTAGCTCCTCTTCATCAGCCTTTGGTGGCAATTaGAGAATATCTAGACAAATCCTTCCACTAGAATCAATGTTTGGA | + |
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Preference number: 6 (lower is better) Translates to: SDEVPSSSSSAFGGN*RISRQILPLESMFG Trigger: TCCAAACATTGATTCTAGTGGAAGGATTTGTCTAGATATTCTCAAATTGCCACCAAAGGCTGATGAAGAGGAGCTAGGCACCTCATCAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188177.2 |
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