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Pregenerated sensors for UBE2S (Mus musculus)

Ensembl gene IDs: ENSMUSG00000060860

Ensembl transcript IDs: ENSMUST00000079496.9, ENSMUST00000205815.2, ENSMUST00000205885.2

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTGGGTACCAACAGGAGTGAGAGCGGCTTGTGCAGGACATTCAGTTaGTTCCTTGTAACTTCTGCACTGCATCCAAAGAGGTGCTCGGTA +
Preference number: 1 (lower is better)
Translates to: LGTNRSESGLCRTFS*FLVTSALHPKRCSV
Trigger: TACCGAGCACCTCTTTGGATGCAGTGCAGAAGTTACAAGGAATCAACTGAATGTCCTGCACAAGCCGCTCTCACTCCTGTTGGTACCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205815.2
3UTR-3UTR GCA 90 bp TTGGGGATAGAAGCTGTTCAGGGCCATCTGGGTACCAACAGGAGTGAGAGCGGCATTCCTTGTAACTTCTaGACTGCATCCAAAGAGGTG +
Preference number: 2 (lower is better)
Translates to: LGIEAVQGHLGTNRSESGIPCNF*TASKEV
Trigger: CACCTCTTTGGATGCAGTGCAGAAGTTACAAGGAAT...GCCGCTCTCACTCCTGTTGGTACCCAGATGGCCCTGAACAGCTTCTATCCCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205815.2
3UTR TCA 72 bp AGAAGCTGTTCAGGGCCATCTGGGTACCAACAGGAGTaGGAGCGGCTTGTGCAGGACATTCAGTTGATTCCT +
Preference number: 3 (lower is better)
Translates to: RSCSGPSGYQQE*ERLVQDIQLIP
Trigger: AGGAATCAACTGAATGTCCTGCACAAGCCGCTCTCACTCCTGTTGGTACCCAGATGGCCCTGAACAGCTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205815.2
3UTR TCA 72 bp AACAGGAGTGAGAGCGGCTTGTGCAGGACATTCAGTTaGTTCCTTGTAACTTCTGCACTGCATCCAAAGAGG +
Preference number: 3 (lower is better)
Translates to: NRSESGLCRTFS*FLVTSALHPKR
Trigger: CCTCTTTGGATGCAGTGCAGAAGTTACAAGGAATCAACTGAATGTCCTGCACAAGCCGCTCTCACTCCTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205815.2
3UTR GCA 72 bp CTTGTGCAGGACATTCAGTTGATTCCTTGTAACTTCTaGACTGCATCCAAAGAGGTGCTCGGTAAATGCTTG +
Preference number: 3 (lower is better)
Translates to: LVQDIQLIPCNF*TASKEVLGKCL
Trigger: CAAGCATTTACCGAGCACCTCTTTGGATGCAGTGCAGAAGTTACAAGGAATCAACTGAATGTCCTGCACAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205815.2
3UTR GCA 72 bp CCTCCAAAATGTTTTGTGCTCATTGAGCTGTGGCTCTaGGCTGTCTTTAGTTGTGCTATCAAAGCTATTAGA +
Preference number: 3 (lower is better)
Translates to: PPKCFVLIELWL*AVFSCAIKAIR
Trigger: TCTAATAGCTTTGATAGCACAACTAAAGACAGCGCAGAGCCACAGCTCAATGAGCACAAAACATTTTGGAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205815.2
CDS-3UTR TCA 90 bp ACTGCATCCAAAGAGGTGCTCGGTAAATGCTTGTCACGGAACGAGCAAGAGACAGTCAGCAGAGGAGGCTaGAGCCCCACTGGCCAGGTC +
Preference number: 4 (lower is better)
Translates to: TASKEVLGKCLSRNEQETVSRGG*SPTGQV
Trigger: GACCTGGCCAGTGGGGCTTCAGCCTCCTCTGCTGAC...TGTCTCTTGCTCGTTCCGTGACAAGCATTTACCGAGCACCTCTTTGGATGCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205815.2
CDS-3UTR CCA 90 bp CATCCAAAGAGGTGCTCGGTAAATGCTTGTCACGGAACGAGCAAGAGACAGATCCAGCCCTCCCGCTGCTaGTGCTGCATGCACCCCCAT +
Preference number: 4 (lower is better)
Translates to: HPKRCSVNACHGTSKRQIQPSRC*CCMHPH
Trigger: ATGGGGGTGCATGCAGCACCAGCAGCGGGAGGGCTG...GATCTGTCTCTTGCTCGTTCCGTGACAAGCATTTACCGAGCACCTCTTTGGATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000205815.2
CDS-3UTR CCA 90 bp TGTAACTTCTGCACTGCATCCAAAGAGGTGCTCGGTAAATGCTTGTCACGGAACCCACTGGCCAGGTCTTaGGTAGCCTCAGCCCTCCCG +
Preference number: 4 (lower is better)
Translates to: CNFCTASKEVLGKCLSRNPLARS*VASALP
Trigger: CGGGAGGGCTGAGGCTACCCAAGACCTGGCCAGTGG...GTTCCGTGACAAGCATTTACCGAGCACCTCTTTGGATGCAGTGCAGAAGTTACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205815.2
CDS-3UTR GCA 90 bp TCTGCACTGCATCCAAAGAGGTGCTCGGTAAATGCTTGTCACGGAACGAGCAAGTCCCGCTGCTGGTGCTaGATGCACCCCCATGGATTT +
Preference number: 4 (lower is better)
Translates to: SALHPKRCSVNACHGTSKSRCWC*MHPHGF
Trigger: AAATCCATGGGGGTGCATGCAGCACCAGCAGCGGGA...CTTGCTCGTTCCGTGACAAGCATTTACCGAGCACCTCTTTGGATGCAGTGCAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000205815.2
CDS-3UTR GCA 90 bp CCATTAGGCCTCCAAAATGTTTTGTGCTCATTGAGCTGTGGCTCTGCGCTGTCTGCAGCACATGTCGTATaGCCAATTCAGCCGTCCAGT +
Preference number: 4 (lower is better)
Translates to: PLGLQNVLCSLSCGSALSAAHVV*PIQPSS
Trigger: ACTGGACGGCTGAATTGGGCATACGACATGTGCTGC...AGACAGCGCAGAGCCACAGCTCAATGAGCACAAAACATTTTGGAGGCCTAATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205815.2
CDS-3UTR GCA 90 bp TGTAACTTCTGCACTGCATCCAAAGAGGTGCTCGGTAAATGCTTGTCACGGAACATAGTTCCCAGCATCTaGATGTTTCTTGGCCATGGG +
Preference number: 4 (lower is better)
Translates to: CNFCTASKEVLGKCLSRNIVPSI*MFLGHG
Trigger: CCCATGGCCAAGAAACATGCAGATGCTGGGAACTAT...GTTCCGTGACAAGCATTTACCGAGCACCTCTTTGGATGCAGTGCAGAAGTTACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205815.2
CDS CCA 90 bp ATCATAGGGTCAGCAGAGGAGGCTGAAGCCCCACTGGCCAGGTCTTaGGTAGCCTCAGCCCTCCCGCTGCTGGTGCTGCATGCACCCCCA +
Preference number: 5 (lower is better)
Translates to: IIGSAEEAEAPLARS*VASALPLLVLHAPP
Trigger: TGGGGGTGCATGCAGCACCAGCAGCGGGAGGGCTGAGGCTACCCAAGACCTGGCCAGTGGGGCTTCAGCCTCCTCTGCTGACCCTATGAT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079496.9
ENSMUST00000205815.2
CDS-3UTR CAA 90 bp GCTGTTCAGGGCCATCTGGGTACCAACAGGAGTGAGAGCGGCTTGTGCAGGACACCCACTGGCCAGGTCTaGGGTAGCCTCAGCCCTCCC +
Preference number: 5 (lower is better)
Translates to: AVQGHLGTNRSESGLCRTPTGQV*GSLSPP
Trigger: GGGAGGGCTGAGGCTACCCAAGACCTGGCCAGTGGG...TGTCCTGCACAAGCCGCTCTCACTCCTGTTGGTACCCAGATGGCCCTGAACAGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205815.2
CDS CCA 72 bp TCAGCAGAGGAGGCTGAAGCCCCACTGGCCAGGTCTTaGGTAGCCTCAGCCCTCCCGCTGCTGGTGCTGCAT +
Preference number: 6 (lower is better)
Translates to: SAEEAEAPLARS*VASALPLLVLH
Trigger: ATGCAGCACCAGCAGCGGGAGGGCTGAGGCTACCCAAGACCTGGCCAGTGGGGCTTCAGCCTCCTCTGCTGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079496.9
ENSMUST00000205815.2
CDS CAA 72 bp GTGGGGCGGCAGATTCTCCACATTGGAGTTCGTTTGTaGAAAGGCCCTGGGGCCGACTCCTGGCTCCGGACG +
Preference number: 6 (lower is better)
Translates to: VGRQILHIGVRL*KGPGADSWLRT
Trigger: CGTCCGGAGCCAGGAGTCGGCCCCAGGGCCTTTCAACAAACGAACTCCAATGTGGAGAATCTGCCGCCCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205885.2
CDS TCA 72 bp TGGGGCGGCAGATTCTCCACATTGGAGTTCGTTTGTTaGAAGGCCCTGGGGCCGACTCCTGGCTCCGGACGT +
Preference number: 6 (lower is better)
Translates to: WGGRFSTLEFVC*KALGPTPGSGR
Trigger: ACGTCCGGAGCCAGGAGTCGGCCCCAGGGCCTTTCAACAAACGAACTCCAATGTGGAGAATCTGCCGCCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205885.2
CDS CAA 72 bp GATGTGGGGCGGCAGATTCTCCACATTGGAGTTCGTTaGTTGAAAGGCCCTGGGGCCGACTCCTGGCTCCGG +
Preference number: 6 (lower is better)
Translates to: DVGRQILHIGVR*LKGPGADSWLR
Trigger: CCGGAGCCAGGAGTCGGCCCCAGGGCCTTTCAACAAACGAACTCCAATGTGGAGAATCTGCCGCCCCACATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205885.2