Pregenerated sensors for UBE2R2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036241Ensembl transcript IDs: ENSMUST00000040008.4
Found 86 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGGATGAAGCTACCGGAGCTCAGGCTTGGGGGAGCCACGTGTGACTaGCACCCAGGAAACAAGGCTGCCTGGAGTCAGCTGGGGCCAGGG | + |
|
Preference number: 1 (lower is better) Translates to: RMKLPELRLGGATCD*HPGNKAAWSQLGPG Trigger: CCCTGGCCCCAGCTGACTCCAGGCAGCCTTGTTTCCTGGGTGTCAGTCACACGTGGCTCCCCCAAGCCTGAGCTCCGGTAGCTTCATCCT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR CCA 90 bp | CCACGTGTGACTGACACCCAGGAAACAAGGCTGCCTGGAGTCAGCTaGGGCCAGGGGAAGCTCCGCACACCATTTCTGCTTGCACTCCTT | + |
|
Preference number: 1 (lower is better) Translates to: PRVTDTQETRLPGVS*GQGKLRTPFLLALL Trigger: AAGGAGTGCAAGCAGAAATGGTGTGCGGAGCTTCCCCTGGCCCCAGCTGACTCCAGGCAGCCTTGTTTCCTGGGTGTCAGTCACACGTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR CCA 90 bp | GGGCAACAGTGGGATCAGGATAAAGAGCACGCACTCAGCGAGGCCTaGATAGACCCAGAGGAGTCACGTTCATCTCACACCAGGCAAACA | + |
|
Preference number: 1 (lower is better) Translates to: GQQWDQDKEHALSEA*IDPEESRSSHTRQT Trigger: TGTTTGCCTGGTGTGAGATGAACGTGACTCCTCTGGGTCTATCCAGGCCTCGCTGAGTGCGTGCTCTTTATCCTGATCCCACTGTTGCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR CCA 90 bp | CCCCTTCCAGTGGCCAGGATCAAACACGAGGGACCCAGCAAATGGTaGCCAGGCCAGGAGGGAGAAGTGATTACAAACGTAGTGTGGTTA | + |
|
Preference number: 1 (lower is better) Translates to: PLPVARIKHEGPSKW*PGQEGEVITNVVWL Trigger: TAACCACACTACGTTTGTAATCACTTCTCCCTCCTGGCCTGGCCACCATTTGCTGGGTCCCTCGTGTTTGATCCTGGCCACTGGAAGGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR CCA 90 bp | ATTCCCCTTCCAGTGGCCAGGATCAAACACGAGGGACCCAGCAAATaGTGGCCAGGCCAGGAGGGAGAAGTGATTACAAACGTAGTGTGG | + |
|
Preference number: 1 (lower is better) Translates to: IPLPVARIKHEGPSK*WPGQEGEVITNVVW Trigger: CCACACTACGTTTGTAATCACTTCTCCCTCCTGGCCTGGCCACCATTTGCTGGGTCCCTCGTGTTTGATCCTGGCCACTGGAAGGGGAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR CCA 90 bp | CTACTTAACCAGAGGGTCAGTCCTTCCCAGTTTCCCTCTGCCCTTTaGTTCCGAGCTGTGACCCTGGCACACACGAATCTTAAGCCCTAT | + |
|
Preference number: 1 (lower is better) Translates to: LLNQRVSPSQFPSAL*FRAVTLAHTNLKPY Trigger: ATAGGGCTTAAGATTCGTGTGTGCCAGGGTCACAGCTCGGAACCAAAGGGCAGAGGGAAACTGGGAAGGACTGACCCTCTGGTTAAGTAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR GCA 90 bp | CTCAAGGCTTTTCCCACAGGACAGGTGTTCAGGGACCTAAGTGTGTaGATGTTAACTCAGTTTAGACTGCAGCATCTGGGCTGCCTAAGT | + |
|
Preference number: 1 (lower is better) Translates to: LKAFPTGQVFRDLSV*MLTQFRLQHLGCLS Trigger: ACTTAGGCAGCCCAGATGCTGCAGTCTAAACTGAGTTAACATGCACACACTTAGGTCCCTGAACACCTGTCCTGTGGGAAAAGCCTTGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR TCA 90 bp | TTACTTAGACAGTTTGCTAAACAAAACCCTCTTTCAAGTCTAGGATaGAGCTACCGGAGCTCAGGCTTGGGGGAGCCACGTGTGACTGAC | + |
|
Preference number: 1 (lower is better) Translates to: LLRQFAKQNPLSSLG*SYRSSGLGEPRVTD Trigger: GTCAGTCACACGTGGCTCCCCCAAGCCTGAGCTCCGGTAGCTTCATCCTAGACTTGAAAGAGGGTTTTGTTTAGCAAACTGTCTAAGTAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR TCA 90 bp | TTCCGAGCTGTGACCCTGGCACACACGAATCTTAAGCCCTATCCTTaGAGTCTGGCTTTACTTAGACAGTTTGCTAAACAAAACCCTCTT | + |
|
Preference number: 1 (lower is better) Translates to: FRAVTLAHTNLKPYP*SLALLRQFAKQNPL Trigger: AAGAGGGTTTTGTTTAGCAAACTGTCTAAGTAAAGCCAGACTTCAAGGATAGGGCTTAAGATTCGTGTGTGCCAGGGTCACAGCTCGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR CCA 90 bp | ATTTTCTTTTGCTACCCAATATATGCAGCACTTGTGGACTCCCAGTaGGCTCCCAGCTTTAAACACAATGTCTTGAACAGACTAATTCTT | + |
|
Preference number: 1 (lower is better) Translates to: IFFCYPIYAALVDSQ*APSFKHNVLNRLIL Trigger: AAGAATTAGTCTGTTCAAGACATTGTGTTTAAAGCTGGGAGCCCACTGGGAGTCCACAAGTGCTGCATATATTGGGTAGCAAAAGAAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR-3UTR TCA 90 bp | CTGCCTGGAGTCAGCTGGGGCCAGGGGAAGCTCCGCACACCATTTCTGCTTGCATCCCTCCCTTTGGCCTaGGACGTCAGGGCAGTACAG | + |
|
Preference number: 2 (lower is better) Translates to: LPGVSWGQGKLRTPFLLASLPLA*DVRAVQ Trigger: CTGTACTGCCCTGACGTCTCAGGCCAAAGGGAGGGA...TGCAAGCAGAAATGGTGTGCGGAGCTTCCCCTGGCCCCAGCTGACTCCAGGCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR CAA 90 bp | CTGGAGTCAGCTGGGGCCAGGGGAAGCTCCGCACACCATTTCTGCTaGCACTCCTTGGCCAAAGTACAAGAAGTCCAGATCATCTCCAGT | + |
|
Preference number: 2 (lower is better) Translates to: LESAGARGSSAHHFC*HSLAKVQEVQIISS Trigger: ACTGGAGATGATCTGGACTTCTTGTACTTTGGCCAAGGAGTGCAAGCAGAAATGGTGTGCGGAGCTTCCCCTGGCCCCAGCTGACTCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR-3UTR TCA 90 bp | AGATCATCTCCAGTGAGGAAAAGGACCAGTCCCAAGCTGCACACATCCACAGTTTCACCACCACGGGGCTaGACAGATGCACACACGCTA | + |
|
Preference number: 2 (lower is better) Translates to: RSSPVRKRTSPKLHTSTVSPPRG*TDAHTL Trigger: TAGCGTGTGTGCATCTGTTCAGCCCCGTGGTGGTGA...AACTGTGGATGTGTGCAGCTTGGGACTGGTCCTTTTCCTCACTGGAGATGATCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR-3UTR CCA 90 bp | CGCACACCATTTCTGCTTGCACTCCTTGGCCAAAGTACAAGAAGTCCAGATCATCTTGCTCCCTCCCTTTaGCCTGAGACGTCAGGGCAG | + |
|
Preference number: 2 (lower is better) Translates to: RTPFLLALLGQSTRSPDHLAPSL*PETSGQ Trigger: CTGCCCTGACGTCTCAGGCCAAAGGGAGGGAGCAAG...ATGATCTGGACTTCTTGTACTTTGGCCAAGGAGTGCAAGCAGAAATGGTGTGCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR-3UTR TCA 90 bp | CCGCACACCATTTCTGCTTGCACTCCTTGGCCAAAGTACAAGAAGTCCAGATCAGGTGAGGTGGGAGTTTaGGGGGTGGTGGCTGTTTTT | + |
|
Preference number: 2 (lower is better) Translates to: PHTISACTPWPKYKKSRSGEVGV*GVVAVF Trigger: AAAAACAGCCACCACCCCTCAAACTCCCACCTCACC...TGATCTGGACTTCTTGTACTTTGGCCAAGGAGTGCAAGCAGAAATGGTGTGCGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR-3UTR TCA 90 bp | GTACAAGAAGTCCAGATCATCTCCAGTGAGGAAAAGGACCAGTCCCAAGCTGCATCTGCAGAGATGAGGTaGGGTGGGAGTTTGAGGGGT | + |
|
Preference number: 2 (lower is better) Translates to: VQEVQIISSEEKDQSQAASAEMR*GGSLRG Trigger: ACCCCTCAAACTCCCACCTCACCTCATCTCTGCAGA...TGCAGCTTGGGACTGGTCCTTTTCCTCACTGGAGATGATCTGGACTTCTTGTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR-3UTR GCA 90 bp | GTTCATCTCACACCAGGCAAACAGCACAACTGCTCAAAACTTCTACTTGCACCCGCTCCTCAGAGTAGCTaGAGCCTCCATGTTGGGATG | + |
|
Preference number: 2 (lower is better) Translates to: VHLTPGKQHNCSKLLLAPAPQSS*SLHVGM Trigger: CATCCCAACATGGAGGCTGCAGCTACTCTGAGGAGC...GGGTGCAAGTAGAAGTTTTGAGCAGTTGTGCTGTTTGCCTGGTGTGAGATGAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR-3UTR CCA 90 bp | AGATCATCTCCAGTGAGGAAAAGGACCAGTCCCAAGCTGCACACATCCACAGTTGGCATCAGCCAACACTaGGATAGGCCTTCTGTGGTT | + |
|
Preference number: 2 (lower is better) Translates to: RSSPVRKRTSPKLHTSTVGISQH*DRPSVV Trigger: AACCACAGAAGGCCTATCCCAGTGTTGGCTGATGCC...AACTGTGGATGTGTGCAGCTTGGGACTGGTCCTTTTCCTCACTGGAGATGATCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR-3UTR CCA 90 bp | CGCACACCATTTCTGCTTGCACTCCTTGGCCAAAGTACAAGAAGTCCAGATCATCTTGTGGACTCCCAGTaGGCTCCCAGCTTTAAACAC | + |
|
Preference number: 2 (lower is better) Translates to: RTPFLLALLGQSTRSPDHLVDSQ*APSFKH Trigger: GTGTTTAAAGCTGGGAGCCCACTGGGAGTCCACAAG...ATGATCTGGACTTCTTGTACTTTGGCCAAGGAGTGCAAGCAGAAATGGTGTGCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR-3UTR CCA 90 bp | AGATCATCTCCAGTGAGGAAAAGGACCAGTCCCAAGCTGCACACATCCACAGTTCCCTCCCCCACTTTCTaGTGGAAAAAGTTATCCCAC | + |
|
Preference number: 2 (lower is better) Translates to: RSSPVRKRTSPKLHTSTVPSPTF*WKKLSH Trigger: GTGGGATAACTTTTTCCACCAGAAAGTGGGGGAGGG...AACTGTGGATGTGTGCAGCTTGGGACTGGTCCTTTTCCTCACTGGAGATGATCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR-3UTR CCA 90 bp | TCTACAATGAAAACTAAGAAAACTAGTAAGGTCAGGATGTCTGCTGGTTTCAGTCTGCCTGGAGTCAGCTaGGGCCAGGGGAAGCTCCGC | + |
|
Preference number: 2 (lower is better) Translates to: STMKTKKTSKVRMSAGFSLPGVS*GQGKLR Trigger: GCGGAGCTTCCCCTGGCCCCAGCTGACTCCAGGCAG...ACTGAAACCAGCAGACATCCTGACCTTACTAGTTTTCTTAGTTTTCATTGTAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR-3UTR TCA 90 bp | AGGTCAGGATGTCTGCTGGTTTCAGTTGAAATTGCATCTGAATCTTTTAAAGTTACCCCCACCACAGGCTaGGGCCCACTTCCTCTTGCC | + |
|
Preference number: 2 (lower is better) Translates to: RSGCLLVSVEIASESFKVTPTTG*GPLPLA Trigger: GGCAAGAGGAAGTGGGCCTCAGCCTGTGGTGGGGGT...AACTTTAAAAGATTCAGATGCAATTTCAACTGAAACCAGCAGACATCCTGACCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR-3UTR TCA 90 bp | ACTTTTGAAGCCAGGGAAATAGCATTCGTTCAGGAGTGTGAAGAGAGAATGAAAGGAGCCACGTGTGACTaGCACCCAGGAAACAAGGCT | + |
|
Preference number: 2 (lower is better) Translates to: TFEAREIAFVQECEERMKGATCD*HPGNKA Trigger: AGCCTTGTTTCCTGGGTGTCAGTCACACGTGGCTCC...TTTCATTCTCTCTTCACACTCCTGAACGAATGCTATTTCCCTGGCTTCAAAAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR-3UTR TCA 90 bp | CCGCACACCATTTCTGCTTGCACTCCTTGGCCAAAGTACAAGAAGTCCAGATCAAAAGGTGTTTTGCTGTaGACATTCTGCAGAGATGAG | + |
|
Preference number: 2 (lower is better) Translates to: PHTISACTPWPKYKKSRSKGVLL*TFCRDE Trigger: CTCATCTCTGCAGAATGTTCACAGCAAAACACCTTT...TGATCTGGACTTCTTGTACTTTGGCCAAGGAGTGCAAGCAGAAATGGTGTGCGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR-3UTR TCA 90 bp | AGGTCAGGATGTCTGCTGGTTTCAGTTGAAATTGCATCTGAATCTTTTAAAGTTACACAGCCTTGGAACTaGCCACCCCCACCACAGGCT | + |
|
Preference number: 2 (lower is better) Translates to: RSGCLLVSVEIASESFKVTQPWN*PPPPQA Trigger: AGCCTGTGGTGGGGGTGGTCAGTTCCAAGGCTGTGT...AACTTTAAAAGATTCAGATGCAATTTCAACTGAAACCAGCAGACATCCTGACCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR-3UTR GCA 90 bp | GTTCATCTCACACCAGGCAAACAGCACAACTGCTCAAAACTTCTACTTGCACCCTTGCTACCCAATATATaGAGCACTTGTGGACTCCCA | + |
|
Preference number: 2 (lower is better) Translates to: VHLTPGKQHNCSKLLLAPLLPNI*STCGLP Trigger: TGGGAGTCCACAAGTGCTGCATATATTGGGTAGCAA...GGGTGCAAGTAGAAGTTTTGAGCAGTTGTGCTGTTTGCCTGGTGTGAGATGAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR-3UTR CCA 90 bp | GTTCATCTCACACCAGGCAAACAGCACAACTGCTCAAAACTTCTACTTGCACCCTCCCCCACTTTCTGGTaGAAAAAGTTATCCCACCTT | + |
|
Preference number: 2 (lower is better) Translates to: VHLTPGKQHNCSKLLLAPSPTFW*KKLSHL Trigger: AAGGTGGGATAACTTTTTCCACCAGAAAGTGGGGGA...GGGTGCAAGTAGAAGTTTTGAGCAGTTGTGCTGTTTGCCTGGTGTGAGATGAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR-3UTR CCA 90 bp | TCTACAATGAAAACTAAGAAAACTAGTAAGGTCAGGATGTCTGCTGGTTTCAGTCTGCAGCCTCCATGTTaGGATGGTGTCACTGAGGCA | + |
|
Preference number: 2 (lower is better) Translates to: STMKTKKTSKVRMSAGFSLQPPC*DGVTEA Trigger: TGCCTCAGTGACACCATCCCAACATGGAGGCTGCAG...ACTGAAACCAGCAGACATCCTGACCTTACTAGTTTTCTTAGTTTTCATTGTAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR-3UTR GCA 90 bp | CCGCACACCATTTCTGCTTGCACTCCTTGGCCAAAGTACAAGAAGTCCAGATCATTTCCCATTTTCTTTTaGTACCCAATATATGCAGCA | + |
|
Preference number: 2 (lower is better) Translates to: PHTISACTPWPKYKKSRSFPIFF*YPIYAA Trigger: TGCTGCATATATTGGGTAGCAAAAGAAAATGGGAAA...TGATCTGGACTTCTTGTACTTTGGCCAAGGAGTGCAAGCAGAAATGGTGTGCGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR-3UTR CCA 90 bp | AGGTCAGGATGTCTGCTGGTTTCAGTTGAAATTGCATCTGAATCTTTTAAAGTTGGGATAGGCCTTCTGTaGTTTCAGAACCAGGAACGC | + |
|
Preference number: 2 (lower is better) Translates to: RSGCLLVSVEIASESFKVGIGLL*FQNQER Trigger: GCGTTCCTGGTTCTGAAACCACAGAAGGCCTATCCC...AACTTTAAAAGATTCAGATGCAATTTCAACTGAAACCAGCAGACATCCTGACCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR-3UTR TCA 90 bp | TCTACAATGAAAACTAAGAAAACTAGTAAGGTCAGGATGTCTGCTGGTTTCAGTGGAGTAAGTTTTTGCTaGGTGGCCACTGTAGATCCC | + |
|
Preference number: 2 (lower is better) Translates to: STMKTKKTSKVRMSAGFSGVSFC*VATVDP Trigger: GGGATCTACAGTGGCCACTCAGCAAAAACTTACTCC...ACTGAAACCAGCAGACATCCTGACCTTACTAGTTTTCTTAGTTTTCATTGTAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR-3UTR CCA 90 bp | ACTTTTGAAGCCAGGGAAATAGCATTCGTTCAGGAGTGTGAAGAGAGAATGAAAACTTCAGACATTCTGTaGAGGGAACTCTCTCCAGTA | + |
|
Preference number: 2 (lower is better) Translates to: TFEAREIAFVQECEERMKTSDIL*RELSPV Trigger: TACTGGAGAGAGTTCCCTCCACAGAATGTCTGAAGT...TTTCATTCTCTCTTCACACTCCTGAACGAATGCTATTTCCCTGGCTTCAAAAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR-3UTR TCA 90 bp | AGGTCAGGATGTCTGCTGGTTTCAGTTGAAATTGCATCTGAATCTTTTAAAGTTATAAAAGGAGCAAACTaGGATCCGCAAAGGGTCAGC | + |
|
Preference number: 2 (lower is better) Translates to: RSGCLLVSVEIASESFKVIKGAN*DPQRVS Trigger: GCTGACCCTTTGCGGATCTCAGTTTGCTCCTTTTAT...AACTTTAAAAGATTCAGATGCAATTTCAACTGAAACCAGCAGACATCCTGACCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR-3UTR GCA 90 bp | AGGTCAGGATGTCTGCTGGTTTCAGTTGAAATTGCATCTGAATCTTTTAAAGTTCACACCATTTCTGCTTaGACTCCTTGGCCAAAGTAC | + |
|
Preference number: 2 (lower is better) Translates to: RSGCLLVSVEIASESFKVHTISA*TPWPKY Trigger: GTACTTTGGCCAAGGAGTGCAAGCAGAAATGGTGTG...AACTTTAAAAGATTCAGATGCAATTTCAACTGAAACCAGCAGACATCCTGACCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR-3UTR CCA 90 bp | AGGTCAGGATGTCTGCTGGTTTCAGTTGAAATTGCATCTGAATCTTTTAAAGTTTCTGCTTGCACTCCTTaGCCAAAGTACAAGAAGTCC | + |
|
Preference number: 2 (lower is better) Translates to: RSGCLLVSVEIASESFKVSACTP*PKYKKS Trigger: GGACTTCTTGTACTTTGGCCAAGGAGTGCAAGCAGA...AACTTTAAAAGATTCAGATGCAATTTCAACTGAAACCAGCAGACATCCTGACCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR-3UTR GCA 90 bp | TCTACAATGAAAACTAAGAAAACTAGTAAGGTCAGGATGTCTGCTGGTTTCAGTATGGAAGGGAAAGAATaGAAGACTTCAGACATTCTG | + |
|
Preference number: 2 (lower is better) Translates to: STMKTKKTSKVRMSAGFSMEGKE*KTSDIL Trigger: CAGAATGTCTGAAGTCTTGCATTCTTTCCCTTCCAT...ACTGAAACCAGCAGACATCCTGACCTTACTAGTTTTCTTAGTTTTCATTGTAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR GCA 72 bp | CCACCACAGGCTGAGGCCCACTTCCTCTTGCCTCTCTaGCTCCGAGTTAACACGCACCACAGGCCAGCGGGG | + |
|
Preference number: 3 (lower is better) Translates to: PPQAEAHFLLPL*LRVNTHHRPAG Trigger: CCCCGCTGGCCTGTGGTGCGTGTTAACTCGGAGGCAGAGAGGCAAGAGGAAGTGGGCCTCAGCCTGTGGTGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR TCA 72 bp | CTACCGGAGCTCAGGCTTGGGGGAGCCACGTGTGACTaGCACCCAGGAAACAAGGCTGCCTGGAGTCAGCTG | + |
|
Preference number: 3 (lower is better) Translates to: LPELRLGGATCD*HPGNKAAWSQL Trigger: CAGCTGACTCCAGGCAGCCTTGTTTCCTGGGTGTCAGTCACACGTGGCTCCCCCAAGCCTGAGCTCCGGTAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR TCA 72 bp | GAAGCTACCGGAGCTCAGGCTTGGGGGAGCCACGTGTaGCTGACACCCAGGAAACAAGGCTGCCTGGAGTCA | + |
|
Preference number: 3 (lower is better) Translates to: EATGAQAWGSHV*LTPRKQGCLES Trigger: TGACTCCAGGCAGCCTTGTTTCCTGGGTGTCAGTCACACGTGGCTCCCCCAAGCCTGAGCTCCGGTAGCTTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR CCA 72 bp | AGTGGCCACTGTAGATCCCCACTTGCTCCCTCCCTTTaGCCTGAGACGTCAGGGCAGTACAGGGGCACTGAA | + |
|
Preference number: 3 (lower is better) Translates to: SGHCRSPLAPSL*PETSGQYRGTE Trigger: TTCAGTGCCCCTGTACTGCCCTGACGTCTCAGGCCAAAGGGAGGGAGCAAGTGGGGATCTACAGTGGCCACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR TCA 72 bp | CGGGGCCTCCCACTGGCCAGGTGCCTAACCTGCCCTTaGCTGGGGTGCTTTAGTATGGAAAGGGTTAGTTTT | + |
|
Preference number: 3 (lower is better) Translates to: RGLPLARCLTCP*LGCFSMERVSF Trigger: AAAACTAACCCTTTCCATACTAAAGCACCCCAGTCAAGGGCAGGTTAGGCACCTGGCCAGTGGGAGGCCCCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR GCA 72 bp | TCAGCTGGGGCCAGGGGAAGCTCCGCACACCATTTCTaGTTGCACTCCTTGGCCAAAGTACAAGAAGTCCAG | + |
|
Preference number: 3 (lower is better) Translates to: SAGARGSSAHHF*LHSLAKVQEVQ Trigger: CTGGACTTCTTGTACTTTGGCCAAGGAGTGCAAGCAGAAATGGTGTGCGGAGCTTCCCCTGGCCCCAGCTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR CCA 72 bp | CAGAGGGTCAGTCCTTCCCAGTTTCCCTCTGCCCTTTaGTTCCGAGCTGTGACCCTGGCACACACGAATCTT | + |
|
Preference number: 3 (lower is better) Translates to: QRVSPSQFPSAL*FRAVTLAHTNL Trigger: AAGATTCGTGTGTGCCAGGGTCACAGCTCGGAACCAAAGGGCAGAGGGAAACTGGGAAGGACTGACCCTCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR CCA 72 bp | CCAGTGGCCAGGATCAAACACGAGGGACCCAGCAAATaGTGGCCAGGCCAGGAGGGAGAAGTGATTACAAAC | + |
|
Preference number: 3 (lower is better) Translates to: PVARIKHEGPSK*WPGQEGEVITN Trigger: GTTTGTAATCACTTCTCCCTCCTGGCCTGGCCACCATTTGCTGGGTCCCTCGTGTTTGATCCTGGCCACTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR GCA 72 bp | CTGGGGCCAGGGGAAGCTCCGCACACCATTTCTGCTTaGACTCCTTGGCCAAAGTACAAGAAGTCCAGATCA | + |
|
Preference number: 3 (lower is better) Translates to: LGPGEAPHTISA*TPWPKYKKSRS Trigger: TGATCTGGACTTCTTGTACTTTGGCCAAGGAGTGCAAGCAGAAATGGTGTGCGGAGCTTCCCCTGGCCCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR CCA 72 bp | CCCGAGGCATCAGCCAACACTGGGATAGGCCTTCTGTaGTTTCAGAACCAGGAACGCACACACACTAACCAC | + |
|
Preference number: 3 (lower is better) Translates to: PEASANTGIGLL*FQNQERTHTNH Trigger: GTGGTTAGTGTGTGTGCGTTCCTGGTTCTGAAACCACAGAAGGCCTATCCCAGTGTTGGCTGATGCCTCGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR CCA 72 bp | TGGGATCAGGATAAAGAGCACGCACTCAGCGAGGCCTaGATAGACCCAGAGGAGTCACGTTCATCTCACACC | + |
|
Preference number: 3 (lower is better) Translates to: WDQDKEHALSEA*IDPEESRSSHT Trigger: GGTGTGAGATGAACGTGACTCCTCTGGGTCTATCCAGGCCTCGCTGAGTGCGTGCTCTTTATCCTGATCCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR CCA 72 bp | GTGGCCAGGATCAAACACGAGGGACCCAGCAAATGGTaGCCAGGCCAGGAGGGAGAAGTGATTACAAACGTA | + |
|
Preference number: 3 (lower is better) Translates to: VARIKHEGPSKW*PGQEGEVITNV Trigger: TACGTTTGTAATCACTTCTCCCTCCTGGCCTGGCCACCATTTGCTGGGTCCCTCGTGTTTGATCCTGGCCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR CCA 72 bp | CAGGTGGGCACTGGGGAAGGAGGATCAGAGAGGATTTaGCTGTACATCTATCTGCAGGCTATCTGGGAGCAA | + |
|
Preference number: 3 (lower is better) Translates to: QVGTGEGGSERI*LYIYLQAIWEQ Trigger: TTGCTCCCAGATAGCCTGCAGATAGATGTACAGCCAAATCCTCTCTGATCCTCCTTCCCCAGTGCCCACCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR GCA 72 bp | TGCATGTTAACTCAGTTTAGACTGCAGCATCTGGGCTaGCTAAGTCCACACAGCCTTGGAACTGACCACCCC | + |
|
Preference number: 3 (lower is better) Translates to: CMLTQFRLQHLG*LSPHSLGTDHP Trigger: GGGGTGGTCAGTTCCAAGGCTGTGTGGACTTAGGCAGCCCAGATGCTGCAGTCTAAACTGAGTTAACATGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR TCA 72 bp | AGGAAGGGAAAGAAACAAAACTCACCACCACGGGGCTaGACAGATGCACACACGCTAATGGAAAGGAGCAGC | + |
|
Preference number: 3 (lower is better) Translates to: RKGKKQNSPPRG*TDAHTLMERSS Trigger: GCTGCTCCTTTCCATTAGCGTGTGTGCATCTGTTCAGCCCCGTGGTGGTGAGTTTTGTTTCTTTCCCTTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR TCA 72 bp | CAGTTTGCTAAACAAAACCCTCTTTCAAGTCTAGGATaGAGCTACCGGAGCTCAGGCTTGGGGGAGCCACGT | + |
|
Preference number: 3 (lower is better) Translates to: QFAKQNPLSSLG*SYRSSGLGEPR Trigger: ACGTGGCTCCCCCAAGCCTGAGCTCCGGTAGCTTCATCCTAGACTTGAAAGAGGGTTTTGTTTAGCAAACTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR TCA 72 bp | GATTACAAACGTAGTGTGGTTAAGAGAGTTCTAGAATaGGAAAGCCGGGCGACGGAGAGGGAGGGGCAACAG | + |
|
Preference number: 3 (lower is better) Translates to: DYKRSVVKRVLE*ESRATEREGQQ Trigger: CTGTTGCCCCTCCCTCTCCGTCGCCCGGCTTTCTCATTCTAGAACTCTCTTAACCACACTACGTTTGTAATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR-3UTR CAA 90 bp | GTTCATCTCACACCAGGCAAACAGCACAACTGCTCAAAACTTCTACTTGCACCCCCCGGGAGTAAGTTTTaGCTGAGTGGCCACTGTAGA | + |
|
Preference number: 3 (lower is better) Translates to: VHLTPGKQHNCSKLLLAPPGSKF*LSGHCR Trigger: TCTACAGTGGCCACTCAGCAAAAACTTACTCCCGGG...GGGTGCAAGTAGAAGTTTTGAGCAGTTGTGCTGTTTGCCTGGTGTGAGATGAAC 50% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR TCA 72 bp | CTTGGCCAAAGTACAAGAAGTCCAGATCATCTCCAGTaGGGAAAAGGACCAGTCCCAAGCTGCACACATCCA | + |
|
Preference number: 3 (lower is better) Translates to: LGQSTRSPDHLQ*GKGPVPSCTHP Trigger: TGGATGTGTGCAGCTTGGGACTGGTCCTTTTCCTCACTGGAGATGATCTGGACTTCTTGTACTTTGGCCAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR GCA 72 bp | TTTCCCACAGGACAGGTGTTCAGGGACCTAAGTGTGTaGATGTTAACTCAGTTTAGACTGCAGCATCTGGGC | + |
|
Preference number: 3 (lower is better) Translates to: FPTGQVFRDLSV*MLTQFRLQHLG Trigger: GCCCAGATGCTGCAGTCTAAACTGAGTTAACATGCACACACTTAGGTCCCTGAACACCTGTCCTGTGGGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR GCA 72 bp | AAAGAAACAAAACTCACCACCACGGGGCTGAACAGATaGACACACGCTAATGGAAAGGAGCAGCTAACCCTT | + |
|
Preference number: 3 (lower is better) Translates to: KETKLTTTGLNR*THANGKEQLTL Trigger: AAGGGTTAGCTGCTCCTTTCCATTAGCGTGTGTGCATCTGTTCAGCCCCGTGGTGGTGAGTTTTGTTTCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR GCA 72 bp | AAGGAGGATCAGAGAGGATTTGGCTGTACATCTATCTaGAGGCTATCTGGGAGCAACAAACTCGAAATGTCT | + |
|
Preference number: 3 (lower is better) Translates to: KEDQRGFGCTSI*RLSGSNKLEMS Trigger: AGACATTTCGAGTTTGTTGCTCCCAGATAGCCTGCAGATAGATGTACAGCCAAATCCTCTCTGATCCTCCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR-3UTR CAA 90 bp | AGGTCAGGATGTCTGCTGGTTTCAGTTGAAATTGCATCTGAATCTTTTAAAGTTCAATATATGCAGCACTaGTGGACTCCCAGTGGGCTC | + |
|
Preference number: 3 (lower is better) Translates to: RSGCLLVSVEIASESFKVQYMQH*WTPSGL Trigger: GAGCCCACTGGGAGTCCACAAGTGCTGCATATATTG...AACTTTAAAAGATTCAGATGCAATTTCAACTGAAACCAGCAGACATCCTGACCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR CCA 72 bp | TGGCACACACGAATCTTAAGCCCTATCCTTGAAGTCTaGCTTTACTTAGACAGTTTGCTAAACAAAACCCTC | + |
|
Preference number: 3 (lower is better) Translates to: WHTRILSPILEV*LYLDSLLNKTL Trigger: GAGGGTTTTGTTTAGCAAACTGTCTAAGTAAAGCCAGACTTCAAGGATAGGGCTTAAGATTCGTGTGTGCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR CAA 72 bp | GCTGGGGCCAGGGGAAGCTCCGCACACCATTTCTGCTaGCACTCCTTGGCCAAAGTACAAGAAGTCCAGATC | + |
|
Preference number: 4 (lower is better) Translates to: AGARGSSAHHFC*HSLAKVQEVQI Trigger: GATCTGGACTTCTTGTACTTTGGCCAAGGAGTGCAAGCAGAAATGGTGTGCGGAGCTTCCCCTGGCCCCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| CDS-3UTR CCA 90 bp | CAGAGGGTCAGTCCTTCCCAGTTTCCCTCTGCCCTTTGGTTCCGAGCTGTGACCAGCATCCACATTGGCTaGAGAAAAGGTGTTGGGCTC | + |
|
Preference number: 4 (lower is better) Translates to: QRVSPSQFPSALWFRAVTSIHIG*RKGVGL Trigger: GAGCCCAACACCTTTTCTCCAGCCAATGTGGATGCT...GGTCACAGCTCGGAACCAAAGGGCAGAGGGAAACTGGGAAGGACTGACCCTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| CDS-3UTR TCA 90 bp | CAGAGGGTCAGTCCTTCCCAGTTTCCCTCTGCCCTTTGGTTCCGAGCTGTGACCTTTCCTGAACATGACTaGAGCATCCACATTGGCTGG | + |
|
Preference number: 4 (lower is better) Translates to: QRVSPSQFPSALWFRAVTFPEHD*SIHIGW Trigger: CCAGCCAATGTGGATGCTTCAGTCATGTTCAGGAAA...GGTCACAGCTCGGAACCAAAGGGCAGAGGGAAACTGGGAAGGACTGACCCTCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| CDS-3UTR CCA 90 bp | CAGAGGGTCAGTCCTTCCCAGTTTCCCTCTGCCCTTTGGTTCCGAGCTGTGACCCTGAAGCATCCACATTaGCTGGAGAAAAGGTGTTGG | + |
|
Preference number: 4 (lower is better) Translates to: QRVSPSQFPSALWFRAVTLKHPH*LEKRCW Trigger: CCAACACCTTTTCTCCAGCCAATGTGGATGCTTCAG...GGTCACAGCTCGGAACCAAAGGGCAGAGGGAAACTGGGAAGGACTGACCCTCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| CDS-3UTR GCA 90 bp | GTACAAGAAGTCCAGATCATCTCCAGTGAGGAAAAGGACCAGTCCCAAGCTGCAAGCATCAGGGCTTTCTaGGAGCTGGTCATCTGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: VQEVQIISSEEKDQSQAASIRAF*ELVICC Trigger: GCAGCAGATGACCAGCTCGCAGAAAGCCCTGATGCT...TGCAGCTTGGGACTGGTCCTTTTCCTCACTGGAGATGATCTGGACTTCTTGTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| CDS-3UTR GCA 90 bp | CGCACACCATTTCTGCTTGCACTCCTTGGCCAAAGTACAAGAAGTCCAGATCATGGTAGCTCTCCACTCTaGGGGTCATCTACAGGCGGA | + |
|
Preference number: 4 (lower is better) Translates to: RTPFLLALLGQSTRSPDHGSSPL*GSSTGG Trigger: TCCGCCTGTAGATGACCCGCAGAGTGGAGAGCTACC...ATGATCTGGACTTCTTGTACTTTGGCCAAGGAGTGCAAGCAGAAATGGTGTGCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| CDS-3UTR CCA 90 bp | AGATCATCTCCAGTGAGGAAAAGGACCAGTCCCAAGCTGCACACATCCACAGTTATTCTGCCAGGGTTGTaGGGACCTTCACTCCATCCT | + |
|
Preference number: 4 (lower is better) Translates to: RSSPVRKRTSPKLHTSTVILPGL*GPSLHP Trigger: AGGATGGAGTGAAGGTCCCCACAACCCTGGCAGAAT...AACTGTGGATGTGTGCAGCTTGGGACTGGTCCTTTTCCTCACTGGAGATGATCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| 3UTR CAA 72 bp | AGGGGAAGCTCCGCACACCATTTCTGCTTGCACTCCTaGGCCAAAGTACAAGAAGTCCAGATCATCTCCAGT | + |
|
Preference number: 4 (lower is better) Translates to: RGSSAHHFCLHS*AKVQEVQIISS Trigger: ACTGGAGATGATCTGGACTTCTTGTACTTTGGCCAAGGAGTGCAAGCAGAAATGGTGTGCGGAGCTTCCCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| CDS-3UTR GCA 90 bp | GTACAAGAAGTCCAGATCATCTCCAGTGAGGAAAAGGACCAGTCCCAAGCTGCATTTGATGCAGTATTCTaGCAGGGTTGTGGGGACCTT | + |
|
Preference number: 4 (lower is better) Translates to: VQEVQIISSEEKDQSQAAFDAVF*QGCGDL Trigger: AAGGTCCCCACAACCCTGGCAGAATACTGCATCAAA...TGCAGCTTGGGACTGGTCCTTTTCCTCACTGGAGATGATCTGGACTTCTTGTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| CDS-3UTR CCA 90 bp | AGGTCAGGATGTCTGCTGGTTTCAGTTGAAATTGCATCTGAATCTTTTAAAGTTGGGCTTTCTGCGAGCTaGTCATCTGCTGCTGGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: RSGCLLVSVEIASESFKVGLSAS*SSAAGP Trigger: TGGCCCAGCAGCAGATGACCAGCTCGCAGAAAGCCC...AACTTTAAAAGATTCAGATGCAATTTCAACTGAAACCAGCAGACATCCTGACCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| CDS-3UTR TCA 90 bp | CGCACACCATTTCTGCTTGCACTCCTTGGCCAAAGTACAAGAAGTCCAGATCATTCTGAAGGTAGGTGGTaGATATGGGTAATCAATAGG | + |
|
Preference number: 4 (lower is better) Translates to: RTPFLLALLGQSTRSPDHSEGRW*IWVINR Trigger: CCTATTGATTACCCATATTCACCACCTACCTTCAGA...ATGATCTGGACTTCTTGTACTTTGGCCAAGGAGTGCAAGCAGAAATGGTGTGCG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| CDS-3UTR GCA 90 bp | GTTCATCTCACACCAGGCAAACAGCACAACTGCTCAAAACTTCTACTTGCACCCAGGAAACTTAATATGTaGCTTGAAGTAGCCGCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: VHLTPGKQHNCSKLLLAPRKLNM*LEVAAF Trigger: GAAGGCGGCTACTTCAAGGCACATATTAAGTTTCCT...GGGTGCAAGTAGAAGTTTTGAGCAGTTGTGCTGTTTGCCTGGTGTGAGATGAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| CDS-3UTR TCA 90 bp | CGCACACCATTTCTGCTTGCACTCCTTGGCCAAAGTACAAGAAGTCCAGATCATTCATCTACAGGCGGATaGAGAATTGAAATGCATACA | + |
|
Preference number: 4 (lower is better) Translates to: RTPFLLALLGQSTRSPDHSSTGG*RIEMHT Trigger: TGTATGCATTTCAATTCTTCATCCGCCTGTAGATGA...ATGATCTGGACTTCTTGTACTTTGGCCAAGGAGTGCAAGCAGAAATGGTGTGCG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| CDS-3UTR GCA 90 bp | AGGTCAGGATGTCTGCTGGTTTCAGTTGAAATTGCATCTGAATCTTTTAAAGTTTCCACCGGTTCCTCCTaGAGGGATTTCAGCTCAAGC | + |
|
Preference number: 4 (lower is better) Translates to: RSGCLLVSVEIASESFKVSTGSS*RDFSSS Trigger: GCTTGAGCTGAAATCCCTGCAGGAGGAACCGGTGGA...AACTTTAAAAGATTCAGATGCAATTTCAACTGAAACCAGCAGACATCCTGACCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| CDS-3UTR TCA 90 bp | ACTTTTGAAGCCAGGGAAATAGCATTCGTTCAGGAGTGTGAAGAGAGAATGAAACTCAGCTTTAGTGGCTaGGACCTGTTTCCTAATGAT | + |
|
Preference number: 4 (lower is better) Translates to: TFEAREIAFVQECEERMKLSFSG*DLFPND Trigger: ATCATTAGGAAACAGGTCTCAGCCACTAAAGCTGAG...TTTCATTCTCTCTTCACACTCCTGAACGAATGCTATTTCCCTGGCTTCAAAAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| CDS-3UTR CAA 90 bp | CAGAGGGTCAGTCCTTCCCAGTTTCCCTCTGCCCTTTGGTTCCGAGCTGTGACCAGTATTCTGCCAGGGTaGTGGGGACCTTCACTCCAT | + |
|
Preference number: 5 (lower is better) Translates to: QRVSPSQFPSALWFRAVTSILPG*WGPSLH Trigger: ATGGAGTGAAGGTCCCCACAACCCTGGCAGAATACT...GGTCACAGCTCGGAACCAAAGGGCAGAGGGAAACTGGGAAGGACTGACCCTCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| CDS-3UTR CAA 90 bp | GTACAAGAAGTCCAGATCATCTCCAGTGAGGAAAAGGACCAGTCCCAAGCTGCAGCTGGAGAAAAGGTGTaGGGCTCATTAAGCAGTGAG | + |
|
Preference number: 5 (lower is better) Translates to: VQEVQIISSEEKDQSQAAAGEKV*GSLSSE Trigger: CTCACTGCTTAATGAGCCCAACACCTTTTCTCCAGC...TGCAGCTTGGGACTGGTCCTTTTCCTCACTGGAGATGATCTGGACTTCTTGTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| CDS-3UTR CAA 90 bp | GTACAAGAAGTCCAGATCATCTCCAGTGAGGAAAAGGACCAGTCCCAAGCTGCATTGGGGTGCCACATTTaGGTCAAGAATCTGAAGGTA | + |
|
Preference number: 5 (lower is better) Translates to: VQEVQIISSEEKDQSQAALGCHI*VKNLKV Trigger: TACCTTCAGATTCTTGACCAAAATGTGGCACCCCAA...TGCAGCTTGGGACTGGTCCTTTTCCTCACTGGAGATGATCTGGACTTCTTGTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| CDS-3UTR CAA 90 bp | AGATCATCTCCAGTGAGGAAAAGGACCAGTCCCAAGCTGCACACATCCACAGTTTCTGAGCTGTTGTCATaGGAAGGCACTTTAGTTTTG | + |
|
Preference number: 5 (lower is better) Translates to: RSSPVRKRTSPKLHTSTVSELLS*EGTLVL Trigger: CAAAACTAAAGTGCCTTCCAATGACAACAGCTCAGA...AACTGTGGATGTGTGCAGCTTGGGACTGGTCCTTTTCCTCACTGGAGATGATCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| CDS-3UTR CAA 90 bp | AGATCATCTCCAGTGAGGAAAAGGACCAGTCCCAAGCTGCACACATCCACAGTTAGCAAATCTGAGCTGTaGTCATTGGAAGGCACTTTA | + |
|
Preference number: 5 (lower is better) Translates to: RSSPVRKRTSPKLHTSTVSKSEL*SLEGTL Trigger: TAAAGTGCCTTCCAATGACAACAGCTCAGATTTGCT...AACTGTGGATGTGTGCAGCTTGGGACTGGTCCTTTTCCTCACTGGAGATGATCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| CDS-3UTR CAA 90 bp | AGGTCAGGATGTCTGCTGGTTTCAGTTGAAATTGCATCTGAATCTTTTAAAGTTACTGAAGCATCCACATaGGCTGGAGAAAAGGTGTTG | + |
|
Preference number: 5 (lower is better) Translates to: RSGCLLVSVEIASESFKVTEAST*AGEKVL Trigger: CAACACCTTTTCTCCAGCCAATGTGGATGCTTCAGT...AACTTTAAAAGATTCAGATGCAATTTCAACTGAAACCAGCAGACATCCTGACCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| CDS-3UTR CAA 90 bp | AGGTCAGGATGTCTGCTGGTTTCAGTTGAAATTGCATCTGAATCTTTTAAAGTTGAAGGCACTTTAGTTTaGATGCAGTATTCTGCCAGG | + |
|
Preference number: 5 (lower is better) Translates to: RSGCLLVSVEIASESFKVEGTLV*MQYSAR Trigger: CCTGGCAGAATACTGCATCAAAACTAAAGTGCCTTC...AACTTTAAAAGATTCAGATGCAATTTCAACTGAAACCAGCAGACATCCTGACCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| CDS TCA 90 bp | TTCATCATCAATGTCGTCGTCATACAAGTCGTCATAAAGCAAATCTaGGCTGTTGTCATTGGAAGGCACTTTAGTTTTGATGCAGTATTC | + |
|
Preference number: 5 (lower is better) Translates to: FIINVVVIQVVIKQI*AVVIGRHFSFDAVF Trigger: GAATACTGCATCAAAACTAAAGTGCCTTCCAATGACAACAGCTCAGATTTGCTTTATGACGACTTGTATGACGACGACATTGATGATGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| CDS GCA 72 bp | ACCAGGGTGATCCGGAAGCCCTCCACCGGTTCCTCCTaGAGGGATTTCAGCTCAAGCATCAGGGCTTTCTGC | + |
|
Preference number: 6 (lower is better) Translates to: TRVIRKPSTGSS*RDFSSSIRAFC Trigger: GCAGAAAGCCCTGATGCTTGAGCTGAAATCCCTGCAGGAGGAACCGGTGGAGGGCTTCCGGATCACCCTGGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| CDS GCA 72 bp | TCTGCGGGTCATCTACAGGCGGATGAAGAATTGAAATaGATACATCTCCATTCTCATAAATGTTGGGGTGCC | + |
|
Preference number: 6 (lower is better) Translates to: SAGHLQADEELK*IHLHSHKCWGA Trigger: GGCACCCCAACATTTATGAGAATGGAGATGTATGCATTTCAATTCTTCATCCGCCTGTAGATGACCCGCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||
| CDS TCA 72 bp | GTGCCACATTTTGGTCAAGAATCTGAAGGTAGGTGGTaGATATGGGTAATCAATAGGAAACTTAATATGTGC | + |
|
Preference number: 6 (lower is better) Translates to: VPHFGQESEGRW*IWVINRKLNMC Trigger: GCACATATTAAGTTTCCTATTGATTACCCATATTCACCACCTACCTTCAGATTCTTGACCAAAATGTGGCAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040008.4 |
||