Pregenerated sensors for UBE2Q2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032307Ensembl transcript IDs: ENSMUST00000059555.15, ENSMUST00000121677.8, ENSMUST00000122441.2
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AATGCTGAACCAACAGGAAGCAGGTTTGGTCCACTAGGACCCTGCTaGTCCAGTGGAAATTACTGCTCACAAGTGGCTGCCTCGTTTTGC | + |
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Preference number: 1 (lower is better) Translates to: NAEPTGSRFGPLGPC*SSGNYCSQVAASFC Trigger: GCAAAACGAGGCAGCCACTTGTGAGCAGTAATTTCCACTGGAGCAGCAGGGTCCTAGTGGACCAAACCTGCTTCCTGTTGGTTCAGCATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059555.15 ENSMUST00000122441.2 |
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| 3UTR GCA 90 bp | AGCAGGTTTGGTCCACTAGGACCCTGCTGCTCCAGTGGAAATTACTaGTCACAAGTGGCTGCCTCGTTTTGCTGTACGCTAATATGGTAC | + |
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Preference number: 1 (lower is better) Translates to: SRFGPLGPCCSSGNY*SQVAASFCCTLIWY Trigger: GTACCATATTAGCGTACAGCAAAACGAGGCAGCCACTTGTGAGCAGTAATTTCCACTGGAGCAGCAGGGTCCTAGTGGACCAAACCTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059555.15 ENSMUST00000122441.2 |
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| 3UTR GCA 90 bp | AGAAATGCTGAACCAACAGGAAGCAGGTTTGGTCCACTAGGACCCTaGTGCTCCAGTGGAAATTACTGCTCACAAGTGGCTGCCTCGTTT | + |
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Preference number: 1 (lower is better) Translates to: RNAEPTGSRFGPLGP*CSSGNYCSQVAASF Trigger: AAACGAGGCAGCCACTTGTGAGCAGTAATTTCCACTGGAGCAGCAGGGTCCTAGTGGACCAAACCTGCTTCCTGTTGGTTCAGCATTTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059555.15 ENSMUST00000122441.2 |
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| 3UTR GCA 90 bp | ACTAGGACCCTGCTGCTCCAGTGGAAATTACTGCTCACAAGTGGCTaGCTCGTTTTGCTGTACGCTAATATGGTACAATTACGATCATAC | + |
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Preference number: 1 (lower is better) Translates to: TRTLLLQWKLLLTSG*LVLLYANMVQLRSY Trigger: GTATGATCGTAATTGTACCATATTAGCGTACAGCAAAACGAGGCAGCCACTTGTGAGCAGTAATTTCCACTGGAGCAGCAGGGTCCTAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059555.15 ENSMUST00000122441.2 |
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| 3UTR CCA 90 bp | AAAGGTAAAATGACCTCATACTTTAGAACTTCAGGCTCTGCACTGTaGCTCTTCCTCACAAGAAATGCTGAACCAACAGGAAGCAGGTTT | + |
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Preference number: 1 (lower is better) Translates to: KGKMTSYFRTSGSAL*LFLTRNAEPTGSRF Trigger: AAACCTGCTTCCTGTTGGTTCAGCATTTCTTGTGAGGAAGAGCCACAGTGCAGAGCCTGAAGTTCTAAAGTATGAGGTCATTTTACCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059555.15 ENSMUST00000122441.2 |
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| 3UTR GCA 90 bp | TGCTGCTCCAGTGGAAATTACTGCTCACAAGTGGCTGCCTCGTTTTaGTGTACGCTAATATGGTACAATTACGATCATACTTTTAGATTA | + |
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Preference number: 1 (lower is better) Translates to: CCSSGNYCSQVAASF*CTLIWYNYDHTFRL Trigger: TAATCTAAAAGTATGATCGTAATTGTACCATATTAGCGTACAGCAAAACGAGGCAGCCACTTGTGAGCAGTAATTTCCACTGGAGCAGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059555.15 ENSMUST00000122441.2 |
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| 3UTR-3UTR GCA 90 bp | ACTTTAGAACTTCAGGCTCTGCACTGTGGCTCTTCCTCACAAGAAATGCTGAACCCACTAGGACCCTGCTaGTCCAGTGGAAATTACTGC | + |
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Preference number: 2 (lower is better) Translates to: TLELQALHCGSSSQEMLNPLGPC*SSGNYC Trigger: GCAGTAATTTCCACTGGAGCAGCAGGGTCCTAGTGG...GTTCAGCATTTCTTGTGAGGAAGAGCCACAGTGCAGAGCCTGAAGTTCTAAAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059555.15 ENSMUST00000122441.2 |
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| 3UTR-3UTR GCA 90 bp | TCTGCACTGTGGCTCTTCCTCACAAGAAATGCTGAACCAACAGGAAGCAGGTTTGGATGCTCACTTCCCTaGTTAAAAGATTTCACTTTT | + |
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Preference number: 2 (lower is better) Translates to: SALWLFLTRNAEPTGSRFGCSLP*LKDFTF Trigger: AAAAGTGAAATCTTTTAAGCAGGGAAGTGAGCATCC...AAACCTGCTTCCTGTTGGTTCAGCATTTCTTGTGAGGAAGAGCCACAGTGCAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059555.15 ENSMUST00000122441.2 |
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| 3UTR CAA 90 bp | TCGGTACTGCTGTTATACGGGCACTCAAAAGCTTATGTCTGTACGTaGGAACGATTTTCTTTAAAGCAACATTGGTCCAGACATATGTCA | + |
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Preference number: 2 (lower is better) Translates to: SVLLLYGHSKAYVCT*ERFSLKQHWSRHMS Trigger: TGACATATGTCTGGACCAATGTTGCTTTAAAGAAAATCGTTCCAACGTACAGACATAAGCTTTTGAGTGCCCGTATAACAGCAGTACCGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000059555.15 ENSMUST00000121677.8 ENSMUST00000122441.2 |
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| 3UTR-3UTR CCA 90 bp | TTCGGTACTGCTGTTATACGGGCACTCAAAAGCTTATGTCTGTACGTTGGAACGTCTTTAAAGCAACATTaGTCCAGACATATGTCAATG | + |
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Preference number: 2 (lower is better) Translates to: FGTAVIRALKSLCLYVGTSLKQH*SRHMSM Trigger: CATTGACATATGTCTGGACCAATGTTGCTTTAAAGA...CGTTCCAACGTACAGACATAAGCTTTTGAGTGCCCGTATAACAGCAGTACCGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059555.15 ENSMUST00000121677.8 ENSMUST00000122441.2 |
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| 3UTR-3UTR CCA 90 bp | AAAATCACAGCTGCAGTAAACGGATGCTCACTTCCCTGCTTAAAAGATTTCACTTCTTTAAAGCAACATTaGTCCAGACATATGTCAATG | + |
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Preference number: 2 (lower is better) Translates to: KITAAVNGCSLPCLKDFTSLKQH*SRHMSM Trigger: CATTGACATATGTCTGGACCAATGTTGCTTTAAAGA...AGTGAAATCTTTTAAGCAGGGAAGTGAGCATCCGTTTACTGCAGCTGTGATTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000059555.15 ENSMUST00000121677.8 ENSMUST00000122441.2 |
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| 3UTR CAA 90 bp | TGTCTTTGTGCCAACCATTCCATAAGTTTATTAGTTTATCGTCAATaGCAACACCCCGCTAATAAATGGAAAGGTAAAATGACCTCATAC | + |
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Preference number: 2 (lower is better) Translates to: CLCANHSISLLVYRQ*QHPANKWKGKMTSY Trigger: GTATGAGGTCATTTTACCTTTCCATTTATTAGCGGGGTGTTGCAATTGACGATAAACTAATAAACTTATGGAATGGTTGGCACAAAGACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059555.15 ENSMUST00000122441.2 |
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| 3UTR GCA 72 bp | CCAACAGGAAGCAGGTTTGGTCCACTAGGACCCTGCTaGTCCAGTGGAAATTACTGCTCACAAGTGGCTGCC | + |
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Preference number: 3 (lower is better) Translates to: PTGSRFGPLGPC*SSGNYCSQVAA Trigger: GGCAGCCACTTGTGAGCAGTAATTTCCACTGGAGCAGCAGGGTCCTAGTGGACCAAACCTGCTTCCTGTTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059555.15 ENSMUST00000122441.2 |
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| 3UTR GCA 72 bp | GGTCCACTAGGACCCTGCTGCTCCAGTGGAAATTACTaGTCACAAGTGGCTGCCTCGTTTTGCTGTACGCTA | + |
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Preference number: 3 (lower is better) Translates to: GPLGPCCSSGNY*SQVAASFCCTL Trigger: TAGCGTACAGCAAAACGAGGCAGCCACTTGTGAGCAGTAATTTCCACTGGAGCAGCAGGGTCCTAGTGGACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059555.15 ENSMUST00000122441.2 |
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| 3UTR TCA 72 bp | AGGCTCTGCACTGTGGCTCTTCCTCACAAGAAATGCTaGACCAACAGGAAGCAGGTTTGGTCCACTAGGACC | + |
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Preference number: 3 (lower is better) Translates to: RLCTVALPHKKC*TNRKQVWSTRT Trigger: GGTCCTAGTGGACCAAACCTGCTTCCTGTTGGTTCAGCATTTCTTGTGAGGAAGAGCCACAGTGCAGAGCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059555.15 ENSMUST00000122441.2 |
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| 3UTR-3UTR CAA 90 bp | TCTGCACTGTGGCTCTTCCTCACAAGAAATGCTGAACCAACAGGAAGCAGGTTTGGTAGGGAGTGGCTATaGTGTGTACTTATCAGGAAA | + |
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Preference number: 3 (lower is better) Translates to: SALWLFLTRNAEPTGSRFGREWL*CVLIRK Trigger: TTTCCTGATAAGTACACACAATAGCCACTCCCTACC...AAACCTGCTTCCTGTTGGTTCAGCATTTCTTGTGAGGAAGAGCCACAGTGCAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059555.15 ENSMUST00000122441.2 |
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| 3UTR GCA 72 bp | CTGCTGCTCCAGTGGAAATTACTGCTCACAAGTGGCTaGCTCGTTTTGCTGTACGCTAATATGGTACAATTA | + |
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Preference number: 3 (lower is better) Translates to: LLLQWKLLLTSG*LVLLYANMVQL Trigger: TAATTGTACCATATTAGCGTACAGCAAAACGAGGCAGCCACTTGTGAGCAGTAATTTCCACTGGAGCAGCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059555.15 ENSMUST00000122441.2 |
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| 3UTR-3UTR CAA 90 bp | TTTAGAACTTCAGGCTCTGCACTGTGGCTCTTCCTCACAAGAAATGCTGAACCAGCTTATGTCTGTACGTaGGAACGATTTTCTTTAAAG | + |
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Preference number: 3 (lower is better) Translates to: FRTSGSALWLFLTRNAEPAYVCT*ERFSLK Trigger: CTTTAAAGAAAATCGTTCCAACGTACAGACATAAGC...TGGTTCAGCATTTCTTGTGAGGAAGAGCCACAGTGCAGAGCCTGAAGTTCTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059555.15 ENSMUST00000122441.2 |
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| 3UTR-3UTR CAA 90 bp | AAAAATCACAGCTGCAGTAAACGGATGCTCACTTCCCTGCTTAAAAGATTTCACGGTAGGGAGTGGCTATaGTGTGTACTTATCAGGAAA | + |
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Preference number: 3 (lower is better) Translates to: KNHSCSKRMLTSLLKRFHGREWL*CVLIRK Trigger: TTTCCTGATAAGTACACACAATAGCCACTCCCTACC...GTGAAATCTTTTAAGCAGGGAAGTGAGCATCCGTTTACTGCAGCTGTGATTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000059555.15 ENSMUST00000121677.8 ENSMUST00000122441.2 |
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| 3UTR GCA 72 bp | AGTGGAAATTACTGCTCACAAGTGGCTGCCTCGTTTTaGTGTACGCTAATATGGTACAATTACGATCATACT | + |
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Preference number: 3 (lower is better) Translates to: SGNYCSQVAASF*CTLIWYNYDHT Trigger: AGTATGATCGTAATTGTACCATATTAGCGTACAGCAAAACGAGGCAGCCACTTGTGAGCAGTAATTTCCACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059555.15 ENSMUST00000122441.2 |
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| 3UTR-3UTR CAA 90 bp | AAAATCACAGCTGCAGTAAACGGATGCTCACTTCCCTGCTTAAAAGATTTCACTGCTTATGTCTGTACGTaGGAACGATTTTCTTTAAAG | + |
|
Preference number: 3 (lower is better) Translates to: KITAAVNGCSLPCLKDFTAYVCT*ERFSLK Trigger: CTTTAAAGAAAATCGTTCCAACGTACAGACATAAGC...AGTGAAATCTTTTAAGCAGGGAAGTGAGCATCCGTTTACTGCAGCTGTGATTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000059555.15 ENSMUST00000121677.8 ENSMUST00000122441.2 |
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| 3UTR-3UTR CAA 90 bp | AAAAATCACAGCTGCAGTAAACGGATGCTCACTTCCCTGCTTAAAAGATTTCACGTAACTGGATGTCAGTaGACAGATTATCCACTAAAT | + |
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Preference number: 3 (lower is better) Translates to: KNHSCSKRMLTSLLKRFHVTGCQ*TDYPLN Trigger: ATTTAGTGGATAATCTGTCAACTGACATCCAGTTAC...GTGAAATCTTTTAAGCAGGGAAGTGAGCATCCGTTTACTGCAGCTGTGATTTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000059555.15 ENSMUST00000121677.8 ENSMUST00000122441.2 |
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| 3UTR CCA 72 bp | AATCAAATATATAAGAAAAGCCGTTTAACTCTGTACTaGGTCGTGCAGGAGTGTGCTTCGAGGTTTCTTTTA | + |
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Preference number: 3 (lower is better) Translates to: NQIYKKSRLTLY*VVQECASRFLL Trigger: TAAAAGAAACCTCGAAGCACACTCCTGCACGACCCAGTACAGAGTTAAACGGCTTTTCTTATATATTTGATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059555.15 |
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| 3UTR CCA 72 bp | TTAGTTTATCGTCAATTGCAACACCCCGCTAATAAATaGAAAGGTAAAATGACCTCATACTTTAGAACTTCA | + |
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Preference number: 3 (lower is better) Translates to: LVYRQLQHPANK*KGKMTSYFRTS Trigger: TGAAGTTCTAAAGTATGAGGTCATTTTACCTTTCCATTTATTAGCGGGGTGTTGCAATTGACGATAAACTAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059555.15 ENSMUST00000122441.2 |
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| CDS-3UTR GCA 90 bp | TCTGCACTGTGGCTCTTCCTCACAAGAAATGCTGAACCAACAGGAAGCAGGTTTACTGCACCCGGGCTTTaGCTTTCACTAAGGTGGCAT | + |
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Preference number: 4 (lower is better) Translates to: SALWLFLTRNAEPTGSRFTAPGL*LSLRWH Trigger: ATGCCACCTTAGTGAAAGGCAAAGCCCGGGTGCAGT...AAACCTGCTTCCTGTTGGTTCAGCATTTCTTGTGAGGAAGAGCCACAGTGCAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059555.15 ENSMUST00000122441.2 |
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| CDS-3UTR GCA 90 bp | TTCGGTACTGCTGTTATACGGGCACTCAAAAGCTTATGTCTGTACGTTGGAACGACTGCACCCGGGCTTTaGCTTTCACTAAGGTGGCAT | + |
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Preference number: 4 (lower is better) Translates to: FGTAVIRALKSLCLYVGTTAPGL*LSLRWH Trigger: ATGCCACCTTAGTGAAAGGCAAAGCCCGGGTGCAGT...CGTTCCAACGTACAGACATAAGCTTTTGAGTGCCCGTATAACAGCAGTACCGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059555.15 ENSMUST00000121677.8 ENSMUST00000122441.2 |
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| CDS-3UTR CCA 90 bp | ACTTTAGAACTTCAGGCTCTGCACTGTGGCTCTTCCTCACAAGAAATGCTGAACATGCGGAATCGCTCGTaGTTCTTGTCGAAGATGGAC | + |
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Preference number: 4 (lower is better) Translates to: TLELQALHCGSSSQEMLNMRNRS*FLSKMD Trigger: GTCCATCTTCGACAAGAACCACGAGCGATTCCGCAT...GTTCAGCATTTCTTGTGAGGAAGAGCCACAGTGCAGAGCCTGAAGTTCTAAAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059555.15 |
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| CDS-3UTR CCA 90 bp | TTCGGTACTGCTGTTATACGGGCACTCAAAAGCTTATGTCTGTACGTTGGAACGATGCGGAATCGCTCGTaGTTCTTGTCGAAGATGGAC | + |
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Preference number: 4 (lower is better) Translates to: FGTAVIRALKSLCLYVGTMRNRS*FLSKMD Trigger: GTCCATCTTCGACAAGAACCACGAGCGATTCCGCAT...CGTTCCAACGTACAGACATAAGCTTTTGAGTGCCCGTATAACAGCAGTACCGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059555.15 ENSMUST00000121677.8 |
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| CDS-3UTR TCA 90 bp | TTCGGTACTGCTGTTATACGGGCACTCAAAAGCTTATGTCTGTACGTTGGAACGTCCAGCCCTGTTTTGTaGGAAGTTCCATACAAAGTG | + |
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Preference number: 4 (lower is better) Translates to: FGTAVIRALKSLCLYVGTSSPVL*EVPYKV Trigger: CACTTTGTATGGAACTTCTCACAAAACAGGGCTGGA...CGTTCCAACGTACAGACATAAGCTTTTGAGTGCCCGTATAACAGCAGTACCGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000059555.15 ENSMUST00000121677.8 ENSMUST00000122441.2 |
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| CDS-3UTR GCA 90 bp | AAAAATCACAGCTGCAGTAAACGGATGCTCACTTCCCTGCTTAAAAGATTTCACACTGCACCCGGGCTTTaGCTTTCACTAAGGTGGCAT | + |
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Preference number: 4 (lower is better) Translates to: KNHSCSKRMLTSLLKRFHTAPGL*LSLRWH Trigger: ATGCCACCTTAGTGAAAGGCAAAGCCCGGGTGCAGT...GTGAAATCTTTTAAGCAGGGAAGTGAGCATCCGTTTACTGCAGCTGTGATTTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000059555.15 ENSMUST00000121677.8 ENSMUST00000122441.2 |
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| CDS-3UTR TCA 90 bp | AAAATCACAGCTGCAGTAAACGGATGCTCACTTCCCTGCTTAAAAGATTTCACTAACCACTTCAATTGCTaGCGGAGCGAACTGTTGTTC | + |
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Preference number: 4 (lower is better) Translates to: KITAAVNGCSLPCLKDFTNHFNC*RSELLF Trigger: GAACAACAGTTCGCTCCGTCAGCAATTGAAGTGGTT...AGTGAAATCTTTTAAGCAGGGAAGTGAGCATCCGTTTACTGCAGCTGTGATTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059555.15 |
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| CDS-3UTR GCA 90 bp | TCTGCACTGTGGCTCTTCCTCACAAGAAATGCTGAACCAACAGGAAGCAGGTTTTTGTGTAGTTTGACATaGCAGTCATATAAGCTGTCA | + |
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Preference number: 4 (lower is better) Translates to: SALWLFLTRNAEPTGSRFLCSLT*QSYKLS Trigger: TGACAGCTTATATGACTGGCATGTCAAACTACACAA...AAACCTGCTTCCTGTTGGTTCAGCATTTCTTGTGAGGAAGAGCCACAGTGCAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000059555.15 ENSMUST00000122441.2 |
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| CDS-3UTR GCA 90 bp | ATATCTTCGGTACTGCTGTTATACGGGCACTCAAAAGCTTATGTCTGTACGTTGATACTGATTCTTATTTaGTCCAAACTGCACCCGGGC | + |
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Preference number: 4 (lower is better) Translates to: ISSVLLLYGHSKAYVCTLILILI*SKLHPG Trigger: GCCCGGGTGCAGTTTGGAGCAAATAAGAATCAGTAT...CAACGTACAGACATAAGCTTTTGAGTGCCCGTATAACAGCAGTACCGAAGATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059555.15 ENSMUST00000121677.8 ENSMUST00000122441.2 |
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| CDS-3UTR GCA 90 bp | TTCGGTACTGCTGTTATACGGGCACTCAAAAGCTTATGTCTGTACGTTGGAACGAAGGTGGCATTGATCTaGATGATGACAGATTCTATT | + |
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Preference number: 4 (lower is better) Translates to: FGTAVIRALKSLCLYVGTKVALI*MMTDSI Trigger: AATAGAATCTGTCATCATGCAGATCAATGCCACCTT...CGTTCCAACGTACAGACATAAGCTTTTGAGTGCCCGTATAACAGCAGTACCGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059555.15 ENSMUST00000121677.8 ENSMUST00000122441.2 |
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| CDS-3UTR GCA 90 bp | AATATCTTCGGTACTGCTGTTATACGGGCACTCAAAAGCTTATGTCTGTACGTTATACTGATTCTTATTTaGTCCAAACTGCACCCGGGC | + |
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Preference number: 4 (lower is better) Translates to: NIFGTAVIRALKSLCLYVILILI*SKLHPG Trigger: GCCCGGGTGCAGTTTGGAGCAAATAAGAATCAGTAT...AACGTACAGACATAAGCTTTTGAGTGCCCGTATAACAGCAGTACCGAAGATATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059555.15 ENSMUST00000121677.8 ENSMUST00000122441.2 |
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| CDS-3UTR TCA 90 bp | CTATTAGCTAATATCTTCGGTACTGCTGTTATACGGGCACTCAAAAGCTTATGTTCCAGCCCTGTTTTGTaGGAAGTTCCATACAAAGTG | + |
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Preference number: 4 (lower is better) Translates to: LLANIFGTAVIRALKSLCSSPVL*EVPYKV Trigger: CACTTTGTATGGAACTTCTCACAAAACAGGGCTGGA...ACATAAGCTTTTGAGTGCCCGTATAACAGCAGTACCGAAGATATTAGCTAATAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000059555.15 ENSMUST00000121677.8 ENSMUST00000122441.2 |
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| CDS-3UTR TCA 90 bp | CACTCAAAAGCTTATGTCTGTACGTTGGAACGATTTTCTTTAAAGCAACATTGGTCCAGCCCTGTTTTGTaGGAAGTTCCATACAAAGTG | + |
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Preference number: 4 (lower is better) Translates to: HSKAYVCTLERFSLKQHWSSPVL*EVPYKV Trigger: CACTTTGTATGGAACTTCTCACAAAACAGGGCTGGA...CCAATGTTGCTTTAAAGAAAATCGTTCCAACGTACAGACATAAGCTTTTGAGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000059555.15 ENSMUST00000121677.8 ENSMUST00000122441.2 |
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| CDS-3UTR GCA 90 bp | ATATCTTCGGTACTGCTGTTATACGGGCACTCAAAAGCTTATGTCTGTACGTTGTTGTGTAGTTTGACATaGCAGTCATATAAGCTGTCA | + |
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Preference number: 4 (lower is better) Translates to: ISSVLLLYGHSKAYVCTLLCSLT*QSYKLS Trigger: TGACAGCTTATATGACTGGCATGTCAAACTACACAA...CAACGTACAGACATAAGCTTTTGAGTGCCCGTATAACAGCAGTACCGAAGATAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059555.15 ENSMUST00000121677.8 ENSMUST00000122441.2 |
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| CDS-3UTR GCA 90 bp | GCTAATATCTTCGGTACTGCTGTTATACGGGCACTCAAAAGCTTATGTCTGTACAAGGTGGCATTGATCTaGATGATGACAGATTCTATT | + |
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Preference number: 4 (lower is better) Translates to: ANIFGTAVIRALKSLCLYKVALI*MMTDSI Trigger: AATAGAATCTGTCATCATGCAGATCAATGCCACCTT...GTACAGACATAAGCTTTTGAGTGCCCGTATAACAGCAGTACCGAAGATATTAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059555.15 ENSMUST00000121677.8 ENSMUST00000122441.2 |
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| CDS-3UTR GCA 90 bp | CACTCAAAAGCTTATGTCTGTACGTTGGAACGATTTTCTTTAAAGCAACATTGGATACTGATTCTTATTTaGTCCAAACTGCACCCGGGC | + |
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Preference number: 4 (lower is better) Translates to: HSKAYVCTLERFSLKQHWILILI*SKLHPG Trigger: GCCCGGGTGCAGTTTGGAGCAAATAAGAATCAGTAT...CCAATGTTGCTTTAAAGAAAATCGTTCCAACGTACAGACATAAGCTTTTGAGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000059555.15 ENSMUST00000121677.8 ENSMUST00000122441.2 |
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| 3UTR CAA 72 bp | TTCACTTTTCAAGAAAGAGGTGGTAGGGAGTGGCTATaGTGTGTACTTATCAGGAAAAATACAGTAAAGGCC | + |
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Preference number: 4 (lower is better) Translates to: FTFQERGGREWL*CVLIRKNTVKA Trigger: GGCCTTTACTGTATTTTTCCTGATAAGTACACACAATAGCCACTCCCTACCACCTCTTTCTTGAAAAGTGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000059555.15 ENSMUST00000121677.8 ENSMUST00000122441.2 |
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| CDS-3UTR TCA 90 bp | GCTGTTATACGGGCACTCAAAAGCTTATGTCTGTACGTTGGAACGATTTTCTTTCGTGCTAGATTATACTaGTTCTTATTTGCTCCAAAC | + |
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Preference number: 4 (lower is better) Translates to: AVIRALKSLCLYVGTIFFRARLY*FLFAPN Trigger: GTTTGGAGCAAATAAGAATCAGTATAATCTAGCACG...AAAGAAAATCGTTCCAACGTACAGACATAAGCTTTTGAGTGCCCGTATAACAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000059555.15 ENSMUST00000121677.8 ENSMUST00000122441.2 |
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| CDS-3UTR GCA 90 bp | AATATCTTCGGTACTGCTGTTATACGGGCACTCAAAAGCTTATGTCTGTACGTTTTGTGTAGTTTGACATaGCAGTCATATAAGCTGTCA | + |
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Preference number: 4 (lower is better) Translates to: NIFGTAVIRALKSLCLYVLCSLT*QSYKLS Trigger: TGACAGCTTATATGACTGGCATGTCAAACTACACAA...AACGTACAGACATAAGCTTTTGAGTGCCCGTATAACAGCAGTACCGAAGATATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000059555.15 ENSMUST00000121677.8 ENSMUST00000122441.2 |
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| 3UTR CAA 72 bp | GCCAACCATTCCATAAGTTTATTAGTTTATCGTCAATaGCAACACCCCGCTAATAAATGGAAAGGTAAAATG | + |
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Preference number: 4 (lower is better) Translates to: ANHSISLLVYRQ*QHPANKWKGKM Trigger: CATTTTACCTTTCCATTTATTAGCGGGGTGTTGCAATTGACGATAAACTAATAAACTTATGGAATGGTTGGC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059555.15 ENSMUST00000122441.2 |
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| 3UTR CAA 72 bp | AGTGAGCAAAATGAAAAGGCTGTAACTGGATGTCAGTaGACAGATTATCCACTAAATGATCTATTAGCTAAT | + |
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Preference number: 4 (lower is better) Translates to: SEQNEKAVTGCQ*TDYPLNDLLAN Trigger: ATTAGCTAATAGATCATTTAGTGGATAATCTGTCAACTGACATCCAGTTACAGCCTTTTCATTTTGCTCACT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000059555.15 ENSMUST00000121677.8 ENSMUST00000122441.2 |
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| CDS-3UTR CAA 90 bp | ACTTTAGAACTTCAGGCTCTGCACTGTGGCTCTTCCTCACAAGAAATGCTGAACAATCGCTCGTGGTTCTaGTCGAAGATGGACGCCAGG | + |
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Preference number: 5 (lower is better) Translates to: TLELQALHCGSSSQEMLNNRSWF*SKMDAR Trigger: CCTGGCGTCCATCTTCGACAAGAACCACGAGCGATT...GTTCAGCATTTCTTGTGAGGAAGAGCCACAGTGCAGAGCCTGAAGTTCTAAAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059555.15 |
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| CDS-3UTR CAA 90 bp | ACTTTAGAACTTCAGGCTCTGCACTGTGGCTCTTCCTCACAAGAAATGCTGAACAACTGCACCCGGGCTTaGCCTTTCACTAAGGTGGCA | + |
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Preference number: 5 (lower is better) Translates to: TLELQALHCGSSSQEMLNNCTRA*PFTKVA Trigger: TGCCACCTTAGTGAAAGGCAAAGCCCGGGTGCAGTT...GTTCAGCATTTCTTGTGAGGAAGAGCCACAGTGCAGAGCCTGAAGTTCTAAAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059555.15 ENSMUST00000122441.2 |
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| CDS-3UTR CAA 90 bp | TTCGGTACTGCTGTTATACGGGCACTCAAAAGCTTATGTCTGTACGTTGGAACGAACTGCACCCGGGCTTaGCCTTTCACTAAGGTGGCA | + |
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Preference number: 5 (lower is better) Translates to: FGTAVIRALKSLCLYVGTNCTRA*PFTKVA Trigger: TGCCACCTTAGTGAAAGGCAAAGCCCGGGTGCAGTT...CGTTCCAACGTACAGACATAAGCTTTTGAGTGCCCGTATAACAGCAGTACCGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059555.15 ENSMUST00000121677.8 ENSMUST00000122441.2 |
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| CDS-3UTR CAA 90 bp | TTTAGAACTTCAGGCTCTGCACTGTGGCTCTTCCTCACAAGAAATGCTGAACCAAACTGCACCCGGGCTTaGCCTTTCACTAAGGTGGCA | + |
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Preference number: 5 (lower is better) Translates to: FRTSGSALWLFLTRNAEPNCTRA*PFTKVA Trigger: TGCCACCTTAGTGAAAGGCAAAGCCCGGGTGCAGTT...TGGTTCAGCATTTCTTGTGAGGAAGAGCCACAGTGCAGAGCCTGAAGTTCTAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059555.15 ENSMUST00000122441.2 |
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| CDS-3UTR CAA 90 bp | GCTGTTATACGGGCACTCAAAAGCTTATGTCTGTACGTTGGAACGATTTTCTTTAATCGCTCGTGGTTCTaGTCGAAGATGGACGCCAGG | + |
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Preference number: 5 (lower is better) Translates to: AVIRALKSLCLYVGTIFFNRSWF*SKMDAR Trigger: CCTGGCGTCCATCTTCGACAAGAACCACGAGCGATT...AAAGAAAATCGTTCCAACGTACAGACATAAGCTTTTGAGTGCCCGTATAACAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059555.15 ENSMUST00000121677.8 |
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| CDS-3UTR CAA 90 bp | TCTGCACTGTGGCTCTTCCTCACAAGAAATGCTGAACCAACAGGAAGCAGGTTTCTATCAGAGTCAACCTaGTGTAGTTTGACATGCCAG | + |
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Preference number: 5 (lower is better) Translates to: SALWLFLTRNAEPTGSRFLSEST*CSLTCQ Trigger: CTGGCATGTCAAACTACACAAGGTTGACTCTGATAG...AAACCTGCTTCCTGTTGGTTCAGCATTTCTTGTGAGGAAGAGCCACAGTGCAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059555.15 ENSMUST00000122441.2 |
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| CDS-3UTR CAA 90 bp | TTTAGAACTTCAGGCTCTGCACTGTGGCTCTTCCTCACAAGAAATGCTGAACCACTATCAGAGTCAACCTaGTGTAGTTTGACATGCCAG | + |
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Preference number: 5 (lower is better) Translates to: FRTSGSALWLFLTRNAEPLSEST*CSLTCQ Trigger: CTGGCATGTCAAACTACACAAGGTTGACTCTGATAG...TGGTTCAGCATTTCTTGTGAGGAAGAGCCACAGTGCAGAGCCTGAAGTTCTAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059555.15 ENSMUST00000122441.2 |
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| CDS-3UTR CAA 90 bp | ATATCTTCGGTACTGCTGTTATACGGGCACTCAAAAGCTTATGTCTGTACGTTGCTATCAGAGTCAACCTaGTGTAGTTTGACATGCCAG | + |
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Preference number: 5 (lower is better) Translates to: ISSVLLLYGHSKAYVCTLLSEST*CSLTCQ Trigger: CTGGCATGTCAAACTACACAAGGTTGACTCTGATAG...CAACGTACAGACATAAGCTTTTGAGTGCCCGTATAACAGCAGTACCGAAGATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059555.15 ENSMUST00000121677.8 ENSMUST00000122441.2 |
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| CDS-3UTR CAA 90 bp | GCTAATATCTTCGGTACTGCTGTTATACGGGCACTCAAAAGCTTATGTCTGTACTTCACTAAGGTGGCATaGATCTGCATGATGACAGAT | + |
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Preference number: 5 (lower is better) Translates to: ANIFGTAVIRALKSLCLYFTKVA*ICMMTD Trigger: ATCTGTCATCATGCAGATCAATGCCACCTTAGTGAA...GTACAGACATAAGCTTTTGAGTGCCCGTATAACAGCAGTACCGAAGATATTAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059555.15 ENSMUST00000121677.8 ENSMUST00000122441.2 |
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| CDS-3UTR CAA 90 bp | AAAAATCACAGCTGCAGTAAACGGATGCTCACTTCCCTGCTTAAAAGATTTCACTATACTGATTCTTATTaGCTCCAAACTGCACCCGGG | + |
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Preference number: 5 (lower is better) Translates to: KNHSCSKRMLTSLLKRFHYTDSY*LQTAPG Trigger: CCCGGGTGCAGTTTGGAGCAAATAAGAATCAGTATA...GTGAAATCTTTTAAGCAGGGAAGTGAGCATCCGTTTACTGCAGCTGTGATTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000059555.15 ENSMUST00000121677.8 ENSMUST00000122441.2 |
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| CDS-3UTR CAA 90 bp | GCTGTTATACGGGCACTCAAAAGCTTATGTCTGTACGTTGGAACGATTTTCTTTTATACTGATTCTTATTaGCTCCAAACTGCACCCGGG | + |
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Preference number: 5 (lower is better) Translates to: AVIRALKSLCLYVGTIFFYTDSY*LQTAPG Trigger: CCCGGGTGCAGTTTGGAGCAAATAAGAATCAGTATA...AAAGAAAATCGTTCCAACGTACAGACATAAGCTTTTGAGTGCCCGTATAACAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000059555.15 ENSMUST00000121677.8 ENSMUST00000122441.2 |
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| CDS-3UTR CAA 90 bp | AAAATCACAGCTGCAGTAAACGGATGCTCACTTCCCTGCTTAAAAGATTTCACTTATACTGATTCTTATTaGCTCCAAACTGCACCCGGG | + |
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Preference number: 5 (lower is better) Translates to: KITAAVNGCSLPCLKDFTYTDSY*LQTAPG Trigger: CCCGGGTGCAGTTTGGAGCAAATAAGAATCAGTATA...AGTGAAATCTTTTAAGCAGGGAAGTGAGCATCCGTTTACTGCAGCTGTGATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000059555.15 ENSMUST00000121677.8 ENSMUST00000122441.2 |
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| CDS-3UTR CAA 90 bp | AAAAATCACAGCTGCAGTAAACGGATGCTCACTTCCCTGCTTAAAAGATTTCACTTCACTAAGGTGGCATaGATCTGCATGATGACAGAT | + |
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Preference number: 5 (lower is better) Translates to: KNHSCSKRMLTSLLKRFHFTKVA*ICMMTD Trigger: ATCTGTCATCATGCAGATCAATGCCACCTTAGTGAA...GTGAAATCTTTTAAGCAGGGAAGTGAGCATCCGTTTACTGCAGCTGTGATTTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000059555.15 ENSMUST00000121677.8 ENSMUST00000122441.2 |
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| CDS-3UTR CAA 90 bp | CACTCAAAAGCTTATGTCTGTACGTTGGAACGATTTTCTTTAAAGCAACATTGGGTCCCATTCGAACTGTaGTTCTTAGTATCTTCTAAG | + |
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Preference number: 5 (lower is better) Translates to: HSKAYVCTLERFSLKQHWVPFEL*FLVSSK Trigger: CTTAGAAGATACTAAGAACAACAGTTCGAATGGGAC...CCAATGTTGCTTTAAAGAAAATCGTTCCAACGTACAGACATAAGCTTTTGAGTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000121677.8 |
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| CDS CCA 72 bp | GAGCGGCGGCGGCGGCGAAAGCGAGCTGCCCGGCGGTaGTGGCGGCGGCGGCACCAGGAACTGGCAGTGCAG | + |
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Preference number: 6 (lower is better) Translates to: ERRRRRKRAARR*WRRRHQELAVQ Trigger: CTGCACTGCCAGTTCCTGGTGCCGCCGCCGCCACCACCGCCGGGCAGCTCGCTTTCGCCGCCGCCGCCGCTC 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059555.15 ENSMUST00000121677.8 |
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