Pregenerated sensors for UBE2L6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027078Ensembl transcript IDs: ENSMUST00000102642.9, ENSMUST00000150325.2
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGGAAAGCAGGCCTGAAACTGTGTGTACCTAACTCCCACTGGCTCTaGAGCCAAGGAGGATGTGGGGATGGTACATCTACAGCCAGACAG | + |
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Preference number: 1 (lower is better) Translates to: WKAGLKLCVPNSHWL*SQGGCGDGTSTARQ Trigger: CTGTCTGGCTGTAGATGTACCATCCCCACATCCTCCTTGGCTTCAGAGCCAGTGGGAGTTAGGTACACACAGTTTCAGGCCTGCTTTCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| 3UTR TCA 90 bp | AATCACTCAACAGTAAATTTGGTACCTTCTGTAGGCTCTGCCTTCTaGGCAGAGTCCTGCCTTTCTCACCCCTTGGTGCCTGGGCCCTGG | + |
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Preference number: 1 (lower is better) Translates to: NHSTVNLVPSVGSAF*AESCLSHPLVPGPW Trigger: CCAGGGCCCAGGCACCAAGGGGTGAGAAAGGCAGGACTCTGCTCAGAAGGCAGAGCCTACAGAAGGTACCAAATTTACTGTTGAGTGATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| 3UTR GCA 90 bp | CAATCTCAATCACTCAACAGTAAATTTGGTACCTTCTGTAGGCTCTaGCTTCTGAGCAGAGTCCTGCCTTTCTCACCCCTTGGTGCCTGG | + |
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Preference number: 1 (lower is better) Translates to: QSQSLNSKFGTFCRL*LLSRVLPFSPLGAW Trigger: CCAGGCACCAAGGGGTGAGAAAGGCAGGACTCTGCTCAGAAGGCAGAGCCTACAGAAGGTACCAAATTTACTGTTGAGTGATTGAGATTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| 3UTR TCA 90 bp | GAACTCAGGAAGTGGGTGGGTGGAGGAATGTCACTATCTGTTTTATaGTTAGCATACCTTGGAGCACTGAGTTTACTACTCTTTCAATCT | + |
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Preference number: 1 (lower is better) Translates to: ELRKWVGGGMSLSVL*LAYLGALSLLLFQS Trigger: AGATTGAAAGAGTAGTAAACTCAGTGCTCCAAGGTATGCTAATCATAAAACAGATAGTGACATTCCTCCACCCACCCACTTCCTGAGTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| 3UTR TCA 90 bp | CATTGCAGTATTCATTCAAAGAAAGTCAAGGTGACTTTCTTTGAATaGATACTCCTTGAACTCAGGAAGTGGGTGGGTGGAGGAATGTCA | + |
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Preference number: 1 (lower is better) Translates to: HCSIHSKKVKVTFFE*ILLELRKWVGGGMS Trigger: TGACATTCCTCCACCCACCCACTTCCTGAGTTCAAGGAGTATTCATTCAAAGAAAGTCACCTTGACTTTCTTTGAATGAATACTGCAATG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| 3UTR-3UTR CCA 90 bp | TTATTCAAGAGCGCTCTCGGGCCCACGGTCATACACCACGCAGGGGTAGAGGACAGGAGGATGTGGGGATaGTACATCTACAGCCAGACA | + |
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Preference number: 2 (lower is better) Translates to: LFKSALGPTVIHHAGVEDRRMWG*YIYSQT Trigger: TGTCTGGCTGTAGATGTACCATCCCCACATCCTCCT...GTCCTCTACCCCTGCGTGGTGTATGACCGTGGGCCCGAGAGCGCTCTTGAATAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| 3UTR-3UTR TCA 90 bp | TGGGGCATTCAATTTTCTGCCAATTGGCCTGAAAGGTGGCCTAAGACAGAGAGAAACTCCCACTGGCTCTaGAGCCAAGGAGGATGTGGG | + |
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Preference number: 2 (lower is better) Translates to: WGIQFSANWPERWPKTERNSHWL*SQGGCG Trigger: CCCACATCCTCCTTGGCTTCAGAGCCAGTGGGAGTT...TCTCTCTGTCTTAGGCCACCTTTCAGGCCAATTGGCAGAAAATTGAATGCCCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| 3UTR-3UTR CCA 90 bp | TCAAGGAGGTGGGAAGGGCGTTGTTGGAAAATACCAAAAATACCAGATAAGAGTTCACCCCTTGGTGCCTaGGCCCTGGGGCATTCAATT | + |
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Preference number: 2 (lower is better) Translates to: SRRWEGRCWKIPKIPDKSSPLGA*ALGHSI Trigger: AATTGAATGCCCCAGGGCCCAGGCACCAAGGGGTGA...ACTCTTATCTGGTATTTTTGGTATTTTCCAACAACGCCCTTCCCACCTCCTTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| 3UTR-3UTR CCA 90 bp | ATTCAATTTTCTGCCAATTGGCCTGAAAGGTGGCCTAAGACAGAGAGAGCTGGAAAGCCAAGGAGGATGTaGGGATGGTACATCTACAGC | + |
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Preference number: 2 (lower is better) Translates to: IQFSANWPERWPKTERAGKPRRM*GWYIYS Trigger: GCTGTAGATGTACCATCCCCACATCCTCCTTGGCTT...TCCAGCTCTCTCTGTCTTAGGCCACCTTTCAGGCCAATTGGCAGAAAATTGAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| 3UTR-3UTR TCA 90 bp | TTTATGATTAGCATACCTTGGAGCACTGAGTTTACTACTCTTTCAATCTCAATCAACTTAGGCACAGGGTaGGCTTCCCAAGGCCTCGGG | + |
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Preference number: 2 (lower is better) Translates to: FMISIPWSTEFTTLSISINLGTG*ASQGLG Trigger: CCCGAGGCCTTGGGAAGCTCACCCTGTGCCTAAGTT...GATTGAGATTGAAAGAGTAGTAAACTCAGTGCTCCAAGGTATGCTAATCATAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| 3UTR-3UTR TCA 90 bp | TTCAATCTCAATCACTCAACAGTAAATTTGGTACCTTCTGTAGGCTCTGCCTTCGCTGGAAAGCAGGCCTaGAACTGTGTGTACCTAACT | + |
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Preference number: 2 (lower is better) Translates to: FNLNHSTVNLVPSVGSAFAGKQA*NCVYLT Trigger: AGTTAGGTACACACAGTTTCAGGCCTGCTTTCCAGC...GAAGGCAGAGCCTACAGAAGGTACCAAATTTACTGTTGAGTGATTGAGATTGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| 3UTR-3UTR TCA 90 bp | TTTATGATTAGCATACCTTGGAGCACTGAGTTTACTACTCTTTCAATCTCAATCGTAGGCTCTGCCTTCTaGGCAGAGTCCTGCCTTTCT | + |
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Preference number: 2 (lower is better) Translates to: FMISIPWSTEFTTLSISIVGSAF*AESCLS Trigger: AGAAAGGCAGGACTCTGCTCAGAAGGCAGAGCCTAC...GATTGAGATTGAAAGAGTAGTAAACTCAGTGCTCCAAGGTATGCTAATCATAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| 3UTR TCA 72 bp | GGCCTGAAACTGTGTGTACCTAACTCCCACTGGCTCTaGAGCCAAGGAGGATGTGGGGATGGTACATCTACA | + |
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Preference number: 3 (lower is better) Translates to: GLKLCVPNSHWL*SQGGCGDGTST Trigger: TGTAGATGTACCATCCCCACATCCTCCTTGGCTTCAGAGCCAGTGGGAGTTAGGTACACACAGTTTCAGGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| 3UTR GCA 72 bp | TCACTCAACAGTAAATTTGGTACCTTCTGTAGGCTCTaGCTTCTGAGCAGAGTCCTGCCTTTCTCACCCCTT | + |
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Preference number: 3 (lower is better) Translates to: SLNSKFGTFCRL*LLSRVLPFSPL Trigger: AAGGGGTGAGAAAGGCAGGACTCTGCTCAGAAGGCAGAGCCTACAGAAGGTACCAAATTTACTGTTGAGTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| 3UTR TCA 72 bp | AAGTGGGTGGGTGGAGGAATGTCACTATCTGTTTTATaGTTAGCATACCTTGGAGCACTGAGTTTACTACTC | + |
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Preference number: 3 (lower is better) Translates to: KWVGGGMSLSVL*LAYLGALSLLL Trigger: GAGTAGTAAACTCAGTGCTCCAAGGTATGCTAATCATAAAACAGATAGTGACATTCCTCCACCCACCCACTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| 3UTR TCA 72 bp | ATTCATTCAAAGAAAGTCAAGGTGACTTTCTTTGAATaGATACTCCTTGAACTCAGGAAGTGGGTGGGTGGA | + |
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Preference number: 3 (lower is better) Translates to: IHSKKVKVTFFE*ILLELRKWVGG Trigger: TCCACCCACCCACTTCCTGAGTTCAAGGAGTATTCATTCAAAGAAAGTCACCTTGACTTTCTTTGAATGAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| 3UTR CCA 72 bp | AGGAATGTCACTATCTGTTTTATGATTAGCATACCTTaGAGCACTGAGTTTACTACTCTTTCAATCTCAATC | + |
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Preference number: 3 (lower is better) Translates to: RNVTICFMISIP*STEFTTLSISI Trigger: GATTGAGATTGAAAGAGTAGTAAACTCAGTGCTCCAAGGTATGCTAATCATAAAACAGATAGTGACATTCCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| CDS-3UTR CCA 90 bp | TGTGGGGATGGTACATCTACAGCCAGACAGCTCAGGGAAGGAGCACACATCACAATAGGGAAGCTGGTCTaGCAGCAGGAGCATGTGCCA | + |
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Preference number: 4 (lower is better) Translates to: CGDGTSTARQLREGAHITIGKLV*QQEHVP Trigger: TGGCACATGCTCCTGCTGCCAGACCAGCTTCCCTAT...TGTGATGTGTGCTCCTTCCCTGAGCTGTCTGGCTGTAGATGTACCATCCCCACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| CDS-3UTR TCA 90 bp | GGTACCTTCTGTAGGCTCTGCCTTCTGAGCAGAGTCCTGCCTTTCTCACCCCTTTACTCACCAGCACATTaGGGGCCTCCAAGACTTGAT | + |
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Preference number: 4 (lower is better) Translates to: GTFCRLCLLSRVLPFSPLYSPAH*GPPRLD Trigger: ATCAAGTCTTGGAGGCCCTCAATGTGCTGGTGAGTA...AAGGGGTGAGAAAGGCAGGACTCTGCTCAGAAGGCAGAGCCTACAGAAGGTACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| CDS-3UTR TCA 90 bp | GGCATTCAATTTTCTGCCAATTGGCCTGAAAGGTGGCCTAAGACAGAGAGAGCTAACATCTCCGGGTTCTaGGTCAGGAGGTCAGCAAGT | + |
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Preference number: 4 (lower is better) Translates to: GIQFSANWPERWPKTERANISGF*VRRSAS Trigger: ACTTGCTGACCTCCTGACTCAGAACCCGGAGATGTT...AGCTCTCTCTGTCTTAGGCCACCTTTCAGGCCAATTGGCAGAAAATTGAATGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| CDS-3UTR GCA 90 bp | ATAATTAGCAACTACAAAGGAAAACTTAGGCACAGGGTGAGCTTCCCAAGGCCTGGCAGCAGGAGCATGTaGCACACAAGCACATTGGCA | + |
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Preference number: 4 (lower is better) Translates to: IISNYKGKLRHRVSFPRPGSRSM*HTSTLA Trigger: TGCCAATGTGCTTGTGTGGCACATGCTCCTGCTGCC...AGGCCTTGGGAAGCTCACCCTGTGCCTAAGTTTTCCTTTGTAGTTGCTAATTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| CDS-3UTR TCA 90 bp | ATAATTAGCAACTACAAAGGAAAACTTAGGCACAGGGTGAGCTTCCCAAGGCCTCTTCTGCCTTCTTCCTaGACATCTCCGGGTTCTGAG | + |
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Preference number: 4 (lower is better) Translates to: IISNYKGKLRHRVSFPRPLLPSS*TSPGSE Trigger: CTCAGAACCCGGAGATGTTCAGGAAGAAGGCAGAAG...AGGCCTTGGGAAGCTCACCCTGTGCCTAAGTTTTCCTTTGTAGTTGCTAATTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| CDS-3UTR CCA 90 bp | TTCAATCTCAATCACTCAACAGTAAATTTGGTACCTTCTGTAGGCTCTGCCTTCAGACTTGATAAGGCTTaGTGTAAGGCTTCCAGTTCT | + |
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Preference number: 4 (lower is better) Translates to: FNLNHSTVNLVPSVGSAFRLDKA*CKASSS Trigger: AGAACTGGAAGCCTTACACCAAGCCTTATCAAGTCT...GAAGGCAGAGCCTACAGAAGGTACCAAATTTACTGTTGAGTGATTGAGATTGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| 3UTR CAA 72 bp | CAGTTTCTAAGAGCCTCTAACAATAGCACATTTGCATaGCAGTATTCATTCAAAGAAAGTCAAGGTGACTTT | + |
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Preference number: 4 (lower is better) Translates to: QFLRASNNSTFA*QYSFKESQGDF Trigger: AAAGTCACCTTGACTTTCTTTGAATGAATACTGCAATGCAAATGTGCTATTGTTAGAGGCTCTTAGAAACTG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| CDS-3UTR CAA 90 bp | GGAGGATGTGGGGATGGTACATCTACAGCCAGACAGCTCAGGGAAGGAGCACACCTCAAAGTGGGAGGCTaGAATGGATACTCCCTGGGG | + |
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Preference number: 5 (lower is better) Translates to: GGCGDGTSTARQLREGAHLKVGG*NGYSLG Trigger: CCCCAGGGAGTATCCATTCAAGCCTCCCACTTTGAG...GTGTGCTCCTTCCCTGAGCTGTCTGGCTGTAGATGTACCATCCCCACATCCTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| CDS CCA 90 bp | CCACACAAGCACATTGGCATCGTCACTAGACAGTTGGCGAAGGTATaGCGGCAGCTCCTTCGAAAGACTCTCCAGCTCTTTCGCCACTCG | + |
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Preference number: 5 (lower is better) Translates to: PHKHIGIVTRQLAKV*RQLLRKTLQLFRHS Trigger: CGAGTGGCGAAAGAGCTGGAGAGTCTTTCGAAGGAGCTGCCGCCATACCTTCGCCAACTGTCTAGTGACGATGCCAATGTGCTTGTGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102642.9 ENSMUST00000150325.2 |
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| CDS CCA 90 bp | AGGAGCATGTGCCACACAAGCACATTGGCATCGTCACTAGACAGTTaGCGAAGGTATGGCGGCAGCTCCTTCGAAAGACTCTCCAGCTCT | + |
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Preference number: 5 (lower is better) Translates to: RSMCHTSTLASSLDS*RRYGGSSFERLSSS Trigger: AGAGCTGGAGAGTCTTTCGAAGGAGCTGCCGCCATACCTTCGCCAACTGTCTAGTGACGATGCCAATGTGCTTGTGTGGCACATGCTCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102642.9 ENSMUST00000150325.2 |
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| CDS CCA 90 bp | ATCAATCCGCACTTGGAAGGCTTTGAGGCCATAGGGAAGCTGGTCTaGCAGCAGGAGCATGTGCCACACAAGCACATTGGCATCGTCACT | + |
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Preference number: 5 (lower is better) Translates to: INPHLEGFEAIGKLV*QQEHVPHKHIGIVT Trigger: AGTGACGATGCCAATGTGCTTGTGTGGCACATGCTCCTGCTGCCAGACCAGCTTCCCTATGGCCTCAAAGCCTTCCAAGTGCGGATTGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| CDS TCA 90 bp | CCAGACGCACAGGCTCTTCCAGATTCGGTTTACTCACCAGCACATTaGGGGCCTCCAAGACTTGATAAGGCTTGGTGTAAGGCTTCCAGT | + |
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Preference number: 5 (lower is better) Translates to: PDAQALPDSVYSPAH*GPPRLDKAWCKASS Trigger: ACTGGAAGCCTTACACCAAGCCTTATCAAGTCTTGGAGGCCCTCAATGTGCTGGTGAGTAAACCGAATCTGGAAGAGCCTGTGCGTCTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| CDS CCA 90 bp | GGGGTGGTAGATCTTGGTGGTGAATCTCAAAGTGGGAGGCTTGAATaGATACTCCCTGGGGAAATCAATCCGCACTTGGAAGGCTTTGAG | + |
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Preference number: 5 (lower is better) Translates to: GVVDLGGESQSGRLE*ILPGEINPHLEGFE Trigger: CTCAAAGCCTTCCAAGTGCGGATTGATTTCCCCAGGGAGTATCCATTCAAGCCTCCCACTTTGAGATTCACCACCAAGATCTACCACCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| CDS GCA 90 bp | AGACTACTTAGAAAAGTCCAGACTAAAGTTGGCAGCAGGAGCATGTaGCACACAAGCACATTGGCATCGTCACTAGACAGTTGGCGAAGG | + |
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Preference number: 5 (lower is better) Translates to: RLLRKVQTKVGSRSM*HTSTLASSLDSWRR Trigger: CCTTCGCCAACTGTCTAGTGACGATGCCAATGTGCTTGTGTGGCACATGCTCCTGCTGCCAACTTTAGTCTGGACTTTTCTAAGTAGTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150325.2 |
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| CDS-3UTR CAA 90 bp | TTTATGATTAGCATACCTTGGAGCACTGAGTTTACTACTCTTTCAATCTCAATCGGCTTCCAGTTCTCATaGCTGATGAGGGGCAGGCAC | + |
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Preference number: 5 (lower is better) Translates to: FMISIPWSTEFTTLSISIGFQFS*LMRGRH Trigger: GTGCCTGCCCCTCATCAGCAATGAGAACTGGAAGCC...GATTGAGATTGAAAGAGTAGTAAACTCAGTGCTCCAAGGTATGCTAATCATAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| CDS CAA 90 bp | CAGGAGCATGTGCCACACAAGCACATTGGCATCGTCACTAGACAGTaGGCGAAGGTATGGCGGCAGCTCCTTCGAAAGACTCTCCAGCTC | + |
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Preference number: 6 (lower is better) Translates to: QEHVPHKHIGIVTRQ*AKVWRQLLRKTLQL Trigger: GAGCTGGAGAGTCTTTCGAAGGAGCTGCCGCCATACCTTCGCCAACTGTCTAGTGACGATGCCAATGTGCTTGTGTGGCACATGCTCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102642.9 ENSMUST00000150325.2 |
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| CDS CAA 72 bp | TGGTCTGGCAGCAGGAGCATGTGCCACACAAGCACATaGGCATCGTCACTAGACAGTTGGCGAAGGTATGGC | + |
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Preference number: 6 (lower is better) Translates to: WSGSRSMCHTST*ASSLDSWRRYG Trigger: GCCATACCTTCGCCAACTGTCTAGTGACGATGCCAATGTGCTTGTGTGGCACATGCTCCTGCTGCCAGACCA 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| CDS TCA 72 bp | AACTCTTCTGCCTTCTTCCTGAACATCTCCGGGTTCTaGGTCAGGAGGTCAGCAAGTTCCAGACGCACAGGC | + |
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Preference number: 6 (lower is better) Translates to: NSSAFFLNISGF*VRRSASSRRTG Trigger: GCCTGTGCGTCTGGAACTTGCTGACCTCCTGACTCAGAACCCGGAGATGTTCAGGAAGAAGGCAGAAGAGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| CDS CCA 72 bp | TGCCACACAAGCACATTGGCATCGTCACTAGACAGTTaGCGAAGGTATGGCGGCAGCTCCTTCGAAAGACTC | + |
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Preference number: 6 (lower is better) Translates to: CHTSTLASSLDS*RRYGGSSFERL Trigger: GAGTCTTTCGAAGGAGCTGCCGCCATACCTTCGCCAACTGTCTAGTGACGATGCCAATGTGCTTGTGTGGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102642.9 ENSMUST00000150325.2 |
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| CDS CCA 72 bp | TGCCGGAGGACAAACAGGCAGATCCCTGGGGCTGGCTaGTTAGCCTGTCTAGACTACTTAGAAAAGTCCAGA | + |
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Preference number: 6 (lower is better) Translates to: CRRTNRQIPGAG*LACLDYLEKSR Trigger: TCTGGACTTTTCTAAGTAGTCTAGACAGGCTAACCAGCCAGCCCCAGGGATCTGCCTGTTTGTCCTCCGGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150325.2 |
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| CDS CAA 72 bp | GTGCCACACAAGCACATTGGCATCGTCACTAGACAGTaGGCGAAGGTATGGCGGCAGCTCCTTCGAAAGACT | + |
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Preference number: 6 (lower is better) Translates to: VPHKHIGIVTRQ*AKVWRQLLRKT Trigger: AGTCTTTCGAAGGAGCTGCCGCCATACCTTCGCCAACTGTCTAGTGACGATGCCAATGTGCTTGTGTGGCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102642.9 ENSMUST00000150325.2 |
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| CDS CCA 72 bp | CACATTGGCATCGTCACTAGACAGTTGGCGAAGGTATaGCGGCAGCTCCTTCGAAAGACTCTCCAGCTCTTT | + |
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Preference number: 6 (lower is better) Translates to: HIGIVTRQLAKV*RQLLRKTLQLF Trigger: AAAGAGCTGGAGAGTCTTTCGAAGGAGCTGCCGCCATACCTTCGCCAACTGTCTAGTGACGATGCCAATGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102642.9 ENSMUST00000150325.2 |
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| CDS CAA 72 bp | CTTGAATGGATACTCCCTGGGGAAATCAATCCGCACTaGGAAGGCTTTGAGGCCATAGGGAAGCTGGTCTGG | + |
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Preference number: 6 (lower is better) Translates to: LEWILPGEINPH*EGFEAIGKLVW Trigger: CCAGACCAGCTTCCCTATGGCCTCAAAGCCTTCCAAGTGCGGATTGATTTCCCCAGGGAGTATCCATTCAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| CDS CAA 72 bp | AAAGTTGGCAGCAGGAGCATGTGCCACACAAGCACATaGGCATCGTCACTAGACAGTTGGCGAAGGTATGGC | + |
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Preference number: 6 (lower is better) Translates to: KVGSRSMCHTST*ASSLDSWRRYG Trigger: GCCATACCTTCGCCAACTGTCTAGTGACGATGCCAATGTGCTTGTGTGGCACATGCTCCTGCTGCCAACTTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150325.2 |
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| CDS CAA 90 bp | GGCTGGTTAGCCTGTCTAGACTACTTAGAAAAGTCCAGACTAAAGTaGGCAGCAGGAGCATGTGCCACACAAGCACATTGGCATCGTCAC | + |
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Preference number: 6 (lower is better) Translates to: GWLACLDYLEKSRLK*AAGACATQAHWHRH Trigger: GTGACGATGCCAATGTGCTTGTGTGGCACATGCTCCTGCTGCCAACTTTAGTCTGGACTTTTCTAAGTAGTCTAGACAGGCTAACCAGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150325.2 |
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| CDS TCA 72 bp | CAGGCTCTTCCAGATTCGGTTTACTCACCAGCACATTaGGGGCCTCCAAGACTTGATAAGGCTTGGTGTAAG | + |
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Preference number: 6 (lower is better) Translates to: QALPDSVYSPAH*GPPRLDKAWCK Trigger: CTTACACCAAGCCTTATCAAGTCTTGGAGGCCCTCAATGTGCTGGTGAGTAAACCGAATCTGGAAGAGCCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| CDS CCA 72 bp | GATCTTGGTGGTGAATCTCAAAGTGGGAGGCTTGAATaGATACTCCCTGGGGAAATCAATCCGCACTTGGAA | + |
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Preference number: 6 (lower is better) Translates to: DLGGESQSGRLE*ILPGEINPHLE Trigger: TTCCAAGTGCGGATTGATTTCCCCAGGGAGTATCCATTCAAGCCTCCCACTTTGAGATTCACCACCAAGATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102642.9 |
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| CDS CAA 72 bp | GCCTGTCTAGACTACTTAGAAAAGTCCAGACTAAAGTaGGCAGCAGGAGCATGTGCCACACAAGCACATTGG | + |
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Preference number: 6 (lower is better) Translates to: ACLDYLEKSRLK*AAGACATQAHW Trigger: CCAATGTGCTTGTGTGGCACATGCTCCTGCTGCCAACTTTAGTCTGGACTTTTCTAAGTAGTCTAGACAGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150325.2 |
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