Pregenerated sensors for UBE2E3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027011Ensembl transcript IDs: ENSMUST00000028398.14
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
---|---|---|
3UTR-3UTR TCA 90 bp | ACCTCTAAACTCTTACAACTTGTTTGTCTTCAACTGAGAGTGTCACGCCTGCACCTCAGACACACCTTCTaGCAAGACTTTCAACATTAT | + |
Preference number: 2 (lower is better) Translates to: TSKLLQLVCLQLRVSRLHLRHTF*QDFQHY Trigger: ATAATGTTGAAAGTCTTGTCAGAAGGTGTGTCTGAG...GTGCAGGCGTGACACTCTCAGTTGAAGACAAACAAGTTGTAAGAGTTTAGAGGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028398.14 |
||
3UTR CAA 90 bp | AGCACCATAGAAAAGCAATCACAGCATAGCAATTATCTGACAATATaGCCCAGCGTTGAACAGAAATCACCAATTTGGAGACAAAATGTT | + |
Preference number: 2 (lower is better) Translates to: STIEKQSQHSNYLTI*PSVEQKSPIWRQNV Trigger: AACATTTTGTCTCCAAATTGGTGATTTCTGTTCAACGCTGGGCAATATTGTCAGATAATTGCTATGCTGTGATTGCTTTTCTATGGTGCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028398.14 |
||
3UTR CCA 72 bp | ATTCTACCTTCAGGGCAAACAGGACTGTTGAGCCTCTaGCTACACTTGCCGGCTATGTATCACAGTAGCAAT | + |
Preference number: 3 (lower is better) Translates to: ILPSGQTGLLSL*LHLPAMYHSSN Trigger: ATTGCTACTGTGATACATAGCCGGCAAGTGTAGCCAGAGGCTCAACAGTCCTGTTTGCCCTGAAGGTAGAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028398.14 |
||
3UTR CCA 72 bp | ACAATATTGCCCAGCGTTGAACAGAAATCACCAATTTaGAGACAAAATGTTCTGTTAAGACACGGAGAGAGT | + |
Preference number: 3 (lower is better) Translates to: TILPSVEQKSPI*RQNVLLRHGES Trigger: ACTCTCTCCGTGTCTTAACAGAACATTTTGTCTCCAAATTGGTGATTTCTGTTCAACGCTGGGCAATATTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028398.14 |
||
3UTR CAA 72 bp | TCAGGGCAAACAGGACTGTTGAGCCTCTGGCTACACTaGCCGGCTATGTATCACAGTAGCAATAATGCACCA | + |
Preference number: 4 (lower is better) Translates to: SGQTGLLSLWLH*PAMYHSSNNAP Trigger: TGGTGCATTATTGCTACTGTGATACATAGCCGGCAAGTGTAGCCAGAGGCTCAACAGTCCTGTTTGCCCTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028398.14 |
||
3UTR CAA 72 bp | CTAACACACATTCTACCTTCAGGGCAAACAGGACTGTaGAGCCTCTGGCTACACTTGCCGGCTATGTATCAC | + |
Preference number: 4 (lower is better) Translates to: LTHILPSGQTGL*SLWLHLPAMYH Trigger: GTGATACATAGCCGGCAAGTGTAGCCAGAGGCTCAACAGTCCTGTTTGCCCTGAAGGTAGAATGTGTGTTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028398.14 |
||
CDS-3UTR GCA 90 bp | TTGCCCAGCGTTGAACAGAAATCACCAATTTGGAGACAAAATGTTCTGTTAAGAGAGGATCCGCAGGGTTaGAATCTGTCAAAAGGGAAC | + |
Preference number: 4 (lower is better) Translates to: LPSVEQKSPIWRQNVLLREDPQG*NLSKGN Trigger: GTTCCCTTTTGACAGATTGCAACCCTGCGGATCCTC...TCTTAACAGAACATTTTGTCTCCAAATTGGTGATTTCTGTTCAACGCTGGGCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028398.14 |
||
3UTR CAA 72 bp | GAAAAGCAATCACAGCATAGCAATTATCTGACAATATaGCCCAGCGTTGAACAGAAATCACCAATTTGGAGA | + |
Preference number: 4 (lower is better) Translates to: EKQSQHSNYLTI*PSVEQKSPIWR Trigger: TCTCCAAATTGGTGATTTCTGTTCAACGCTGGGCAATATTGTCAGATAATTGCTATGCTGTGATTGCTTTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028398.14 |
||
CDS-3UTR CAA 90 bp | ACCTCTAAACTCTTACAACTTGTTTGTCTTCAACTGAGAGTGTCACGCCTGCACAGAGGATCCGCAGGGTaGCAATCTGTCAAAAGGGAA | + |
Preference number: 5 (lower is better) Translates to: TSKLLQLVCLQLRVSRLHRGSAG*QSVKRE Trigger: TTCCCTTTTGACAGATTGCAACCCTGCGGATCCTCT...GTGCAGGCGTGACACTCTCAGTTGAAGACAAACAAGTTGTAAGAGTTTAGAGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028398.14 |
||
CDS-3UTR CAA 90 bp | ACGGAGAGAGTCCTAAATAACGCAGGACTTCATTTTCAATTCAAATGCTACACTAAAGCAGGACTCCAGTaGTCTTTCAGAATATCCAGG | + |
Preference number: 5 (lower is better) Translates to: TERVLNNAGLHFQFKCYTKAGLQ*SFRISR Trigger: CCTGGATATTCTGAAAGACAACTGGAGTCCTGCTTT...AGTGTAGCATTTGAATTGAAAATGAAGTCCTGCGTTATTTAGGACTCTCTCCGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028398.14 |