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Pregenerated sensors for UBE2E3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027011

Ensembl transcript IDs: ENSMUST00000028398.14

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp ACCTCTAAACTCTTACAACTTGTTTGTCTTCAACTGAGAGTGTCACGCCTGCACCTCAGACACACCTTCTaGCAAGACTTTCAACATTAT +
Preference number: 2 (lower is better)
Translates to: TSKLLQLVCLQLRVSRLHLRHTF*QDFQHY
Trigger: ATAATGTTGAAAGTCTTGTCAGAAGGTGTGTCTGAG...GTGCAGGCGTGACACTCTCAGTTGAAGACAAACAAGTTGTAAGAGTTTAGAGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028398.14
3UTR CAA 90 bp AGCACCATAGAAAAGCAATCACAGCATAGCAATTATCTGACAATATaGCCCAGCGTTGAACAGAAATCACCAATTTGGAGACAAAATGTT +
Preference number: 2 (lower is better)
Translates to: STIEKQSQHSNYLTI*PSVEQKSPIWRQNV
Trigger: AACATTTTGTCTCCAAATTGGTGATTTCTGTTCAACGCTGGGCAATATTGTCAGATAATTGCTATGCTGTGATTGCTTTTCTATGGTGCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028398.14
3UTR CCA 72 bp ATTCTACCTTCAGGGCAAACAGGACTGTTGAGCCTCTaGCTACACTTGCCGGCTATGTATCACAGTAGCAAT +
Preference number: 3 (lower is better)
Translates to: ILPSGQTGLLSL*LHLPAMYHSSN
Trigger: ATTGCTACTGTGATACATAGCCGGCAAGTGTAGCCAGAGGCTCAACAGTCCTGTTTGCCCTGAAGGTAGAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028398.14
3UTR CCA 72 bp ACAATATTGCCCAGCGTTGAACAGAAATCACCAATTTaGAGACAAAATGTTCTGTTAAGACACGGAGAGAGT +
Preference number: 3 (lower is better)
Translates to: TILPSVEQKSPI*RQNVLLRHGES
Trigger: ACTCTCTCCGTGTCTTAACAGAACATTTTGTCTCCAAATTGGTGATTTCTGTTCAACGCTGGGCAATATTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028398.14
3UTR CAA 72 bp TCAGGGCAAACAGGACTGTTGAGCCTCTGGCTACACTaGCCGGCTATGTATCACAGTAGCAATAATGCACCA +
Preference number: 4 (lower is better)
Translates to: SGQTGLLSLWLH*PAMYHSSNNAP
Trigger: TGGTGCATTATTGCTACTGTGATACATAGCCGGCAAGTGTAGCCAGAGGCTCAACAGTCCTGTTTGCCCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028398.14
3UTR CAA 72 bp CTAACACACATTCTACCTTCAGGGCAAACAGGACTGTaGAGCCTCTGGCTACACTTGCCGGCTATGTATCAC +
Preference number: 4 (lower is better)
Translates to: LTHILPSGQTGL*SLWLHLPAMYH
Trigger: GTGATACATAGCCGGCAAGTGTAGCCAGAGGCTCAACAGTCCTGTTTGCCCTGAAGGTAGAATGTGTGTTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028398.14
CDS-3UTR GCA 90 bp TTGCCCAGCGTTGAACAGAAATCACCAATTTGGAGACAAAATGTTCTGTTAAGAGAGGATCCGCAGGGTTaGAATCTGTCAAAAGGGAAC +
Preference number: 4 (lower is better)
Translates to: LPSVEQKSPIWRQNVLLREDPQG*NLSKGN
Trigger: GTTCCCTTTTGACAGATTGCAACCCTGCGGATCCTC...TCTTAACAGAACATTTTGTCTCCAAATTGGTGATTTCTGTTCAACGCTGGGCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028398.14
3UTR CAA 72 bp GAAAAGCAATCACAGCATAGCAATTATCTGACAATATaGCCCAGCGTTGAACAGAAATCACCAATTTGGAGA +
Preference number: 4 (lower is better)
Translates to: EKQSQHSNYLTI*PSVEQKSPIWR
Trigger: TCTCCAAATTGGTGATTTCTGTTCAACGCTGGGCAATATTGTCAGATAATTGCTATGCTGTGATTGCTTTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028398.14
CDS-3UTR CAA 90 bp ACCTCTAAACTCTTACAACTTGTTTGTCTTCAACTGAGAGTGTCACGCCTGCACAGAGGATCCGCAGGGTaGCAATCTGTCAAAAGGGAA +
Preference number: 5 (lower is better)
Translates to: TSKLLQLVCLQLRVSRLHRGSAG*QSVKRE
Trigger: TTCCCTTTTGACAGATTGCAACCCTGCGGATCCTCT...GTGCAGGCGTGACACTCTCAGTTGAAGACAAACAAGTTGTAAGAGTTTAGAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028398.14
CDS-3UTR CAA 90 bp ACGGAGAGAGTCCTAAATAACGCAGGACTTCATTTTCAATTCAAATGCTACACTAAAGCAGGACTCCAGTaGTCTTTCAGAATATCCAGG +
Preference number: 5 (lower is better)
Translates to: TERVLNNAGLHFQFKCYTKAGLQ*SFRISR
Trigger: CCTGGATATTCTGAAAGACAACTGGAGTCCTGCTTT...AGTGTAGCATTTGAATTGAAAATGAAGTCCTGCGTTATTTAGGACTCTCTCCGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028398.14