Pregenerated sensors for UBE2E2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000058317Ensembl transcript IDs: ENSMUST00000076133.10, ENSMUST00000124353.2, ENSMUST00000150727.8, ENSMUST00000151926.8, ENSMUST00000175643.8, ENSMUST00000176555.8, ENSMUST00000176843.8
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGCAGGTGGGTACTGATGCACTTGGTGAATGTGCTGGCACACAGCTaGCACACGCAGGCCCCTAGGTGGCGTACCGCTTGGTCCACTGTC | + |
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Preference number: 1 (lower is better) Translates to: SRWVLMHLVNVLAHS*HTQAPRWRTAWSTV Trigger: GACAGTGGACCAAGCGGTACGCCACCTAGGGGCCTGCGTGTGCCAGCTGTGTGCCAGCACATTCACCAAGTGCATCAGTACCCACCTGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176555.8 |
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| 3UTR-3UTR CCA 90 bp | CAGGAGCAGGTGGGTACTGATGCACTTGGTGAATGTGCTGGCACACAGCTGGCATGGTCATGTACTGTGTaGCAATACTGCCCACCAGAG | + |
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Preference number: 2 (lower is better) Translates to: QEQVGTDALGECAGTQLAWSCTV*QYCPPE Trigger: CTCTGGTGGGCAGTATTGCCACACAGTACATGACCA...TGCCAGCTGTGTGCCAGCACATTCACCAAGTGCATCAGTACCCACCTGCTCCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176555.8 |
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| 3UTR-3UTR CCA 90 bp | ACAGTGATTCTGATTGGACCTTTTGTACAAAACCTTGTTCCCAGTAGCATGCACGTGCTGGCACACAGCTaGCACACGCAGGCCCCTAGG | + |
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Preference number: 2 (lower is better) Translates to: TVILIGPFVQNLVPSSMHVLAHS*HTQAPR Trigger: CCTAGGGGCCTGCGTGTGCCAGCTGTGTGCCAGCAC...GTGCATGCTACTGGGAACAAGGTTTTGTACAAAAGGTCCAATCAGAATCACTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000176555.8 |
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| 3UTR-3UTR GCA 90 bp | CTGCAGTGGGGGAATCCCAAATCTTTCAAGTTAACAGAAACCGAAAATGGAATAGACAGAACGGAGGGCTaGAGGAGCAGGTGGGTACTG | + |
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Preference number: 2 (lower is better) Translates to: LQWGNPKSFKLTETENGIDRTEG*RSRWVL Trigger: CAGTACCCACCTGCTCCTGCAGCCCTCCGTTCTGTC...TATTCCATTTTCGGTTTCTGTTAACTTGAAAGATTTGGGATTCCCCCACTGCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000150727.8 ENSMUST00000175643.8 ENSMUST00000176555.8 |
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| 3UTR-3UTR CCA 90 bp | AGCACTACATTTAAGTATAAACGAGATATACTCCTGAATGTTTGTTTTCCCCGACATGCTCCGCTCTGTTaGTCATGTACTGTGTGGCAA | + |
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Preference number: 2 (lower is better) Translates to: STTFKYKRDILLNVCFPRHAPLC*SCTVWQ Trigger: TTGCCACACAGTACATGACCAACAGAGCGGAGCATG...TCGGGGAAAACAAACATTCAGGAGTATATCTCGTTTATACTTAAATGTAGTGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000176555.8 |
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| 3UTR CCA 72 bp | GTACTGATGCACTTGGTGAATGTGCTGGCACACAGCTaGCACACGCAGGCCCCTAGGTGGCGTACCGCTTGG | + |
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Preference number: 3 (lower is better) Translates to: VLMHLVNVLAHS*HTQAPRWRTAW Trigger: CCAAGCGGTACGCCACCTAGGGGCCTGCGTGTGCCAGCTGTGTGCCAGCACATTCACCAAGTGCATCAGTAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176555.8 |
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| 3UTR-3UTR CAA 90 bp | CTTCTGTGTGGGGGACAGAAGGCTTGTGACAGGGTCTCAGTAATGCACAGTGATCTTTTGTACAAAACCTaGTTCCCAGTAGCATGCACC | + |
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Preference number: 3 (lower is better) Translates to: LLCGGQKACDRVSVMHSDLLYKT*FPVACT Trigger: GGTGCATGCTACTGGGAACAAGGTTTTGTACAAAAG...ATCACTGTGCATTACTGAGACCCTGTCACAAGCCTTCTGTCCCCCACACAGAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000150727.8 ENSMUST00000176555.8 |
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| 3UTR-3UTR CAA 90 bp | CACACTGCAGTGGGGGAATCCCAAATCTTTCAAGTTAACAGAAACCGAAAATGGTGGGTACTGATGCACTaGGTGAATGTGCTGGCACAC | + |
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Preference number: 3 (lower is better) Translates to: HTAVGESQIFQVNRNRKWWVLMH*VNVLAH Trigger: GTGTGCCAGCACATTCACCAAGTGCATCAGTACCCA...CCATTTTCGGTTTCTGTTAACTTGAAAGATTTGGGATTCCCCCACTGCAGTGTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000150727.8 ENSMUST00000175643.8 ENSMUST00000176555.8 |
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| 3UTR-3UTR CAA 90 bp | ACAGTGATTCTGATTGGACCTTTTGTACAAAACCTTGTTCCCAGTAGCATGCACTCATGCTCCGCTCTGTaGGTCATGTACTGTGTGGCA | + |
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Preference number: 3 (lower is better) Translates to: TVILIGPFVQNLVPSSMHSCSAL*VMYCVA Trigger: TGCCACACAGTACATGACCAACAGAGCGGAGCATGA...GTGCATGCTACTGGGAACAAGGTTTTGTACAAAAGGTCCAATCAGAATCACTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000176555.8 |
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| 3UTR-3UTR CAA 90 bp | GGGACAGATGACATACCATCCCCAAACAGTTTAAAATGTAATAACAACAGGCGATGGGTACTGATGCACTaGGTGAATGTGCTGGCACAC | + |
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Preference number: 3 (lower is better) Translates to: GTDDIPSPNSLKCNNNRRWVLMH*VNVLAH Trigger: GTGTGCCAGCACATTCACCAAGTGCATCAGTACCCA...TCGCCTGTTGTTATTACATTTTAAACTGTTTGGGGATGGTATGTCATCTGTCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000150727.8 ENSMUST00000175643.8 ENSMUST00000176555.8 |
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| 3UTR-3UTR CAA 90 bp | GATGACATACCATCCCCAAACAGTTTAAAATGTAATAACAACAGGCGACAGAACTGGGTACTGATGCACTaGGTGAATGTGCTGGCACAC | + |
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Preference number: 3 (lower is better) Translates to: DDIPSPNSLKCNNNRRQNWVLMH*VNVLAH Trigger: GTGTGCCAGCACATTCACCAAGTGCATCAGTACCCA...GTTCTGTCGCCTGTTGTTATTACATTTTAAACTGTTTGGGGATGGTATGTCATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000150727.8 ENSMUST00000175643.8 ENSMUST00000176555.8 |
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| 3UTR TCA 72 bp | TTTATTGAGGCATTAATAATACAAGTATACATCAACTaGTCCACAGTCAAAAGTGGCAGGTCCCTAAGAAAT | + |
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Preference number: 3 (lower is better) Translates to: FIEALIIQVYIN*STVKSGRSLRN Trigger: ATTTCTTAGGGACCTGCCACTTTTGACTGTGGATCAGTTGATGTATACTTGTATTATTAATGCCTCAATAAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000150727.8 ENSMUST00000176555.8 |
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| CDS-3UTR TCA 90 bp | AGCAGGTGGGTACTGATGCACTTGGTGAATGTGCTGGCACACAGCTGGCACACGTTCTCGTTCGGAAGGTaGCCTACAGTTGGGAGGGGG | + |
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Preference number: 4 (lower is better) Translates to: SRWVLMHLVNVLAHSWHTFSFGR*PTVGRG Trigger: CCCCCTCCCAACTGTAGGTCACCTTCCGAACGAGAA...CGTGTGCCAGCTGTGTGCCAGCACATTCACCAAGTGCATCAGTACCCACCTGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176555.8 |
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| CDS-3UTR CCA 90 bp | ACAACAGGCGACAGAACGGAGGGCTGCAGGAGCAGGTGGGTACTGATGCACTTGCATGCTCCGCTCTGTTaGTCATGTACTGTGTGGCAA | + |
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Preference number: 4 (lower is better) Translates to: TTGDRTEGCRSRWVLMHLHAPLC*SCTVWQ Trigger: TTGCCACACAGTACATGACCAACAGAGCGGAGCATG...CAAGTGCATCAGTACCCACCTGCTCCTGCAGCCCTCCGTTCTGTCGCCTGTTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000150727.8 ENSMUST00000175643.8 |
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| CDS-3UTR CCA 90 bp | GTTCAATCTGACAGTCTTCTGTGTGGGGGACAGAAGGCTTGTGACAGGGTCTCAGAATTCTTTTGGCACTaGTTGACAGTTTCGCGGCTG | + |
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Preference number: 4 (lower is better) Translates to: VQSDSLLCGGQKACDRVSEFFWH*LTVSRL Trigger: CAGCCGCGAAACTGTCAACCAGTGCCAAAAGAATTC...TGAGACCCTGTCACAAGCCTTCTGTCCCCCACACAGAAGACTGTCAGATTGAAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000150727.8 ENSMUST00000176555.8 |
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| CDS-3UTR CCA 90 bp | ACAGTGATTCTGATTGGACCTTTTGTACAAAACCTTGTTCCCAGTAGCATGCACTCGCGGCTGTCTTGCTaGATATCTTCCCCTCCTTTT | + |
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Preference number: 4 (lower is better) Translates to: TVILIGPFVQNLVPSSMHSRLSC*ISSPPF Trigger: AAAAGGAGGGGAAGATATCCAGCAAGACAGCCGCGA...GTGCATGCTACTGGGAACAAGGTTTTGTACAAAAGGTCCAATCAGAATCACTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000150727.8 ENSMUST00000176555.8 |
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| CDS-3UTR TCA 90 bp | GTGATTCTGATTGGACCTTTTGTACAAAACCTTGTTCCCAGTAGCATGCACCCATCTGCAAGCTCCTTCTaGATTCTTTTGGCACTGGTT | + |
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Preference number: 4 (lower is better) Translates to: VILIGPFVQNLVPSSMHPSASSF*ILLALV Trigger: AACCAGTGCCAAAAGAATTCAGAAGGAGCTTGCAGA...TGGGTGCATGCTACTGGGAACAAGGTTTTGTACAAAAGGTCCAATCAGAATCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000150727.8 ENSMUST00000176555.8 |
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| CDS-3UTR CCA 90 bp | ACACTGCAGTGGGGGAATCCCAAATCTTTCAAGTTAACAGAAACCGAAAATGGATCCTCCACTAGTGCTTaGACTGTCATCAACTCTCTG | + |
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Preference number: 4 (lower is better) Translates to: TLQWGNPKSFKLTETENGSSTSA*TVINSL Trigger: CAGAGAGTTGATGACAGTCCAAGCACTAGTGGAGGA...TCCATTTTCGGTTTCTGTTAACTTGAAAGATTTGGGATTCCCCCACTGCAGTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000150727.8 ENSMUST00000176555.8 |
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| CDS-3UTR CCA 90 bp | GTCTCAGTAATGCACAGTGATTCTGATTGGACCTTTTGTACAAAACCTTGTTCCTCGCGGCTGTCTTGCTaGATATCTTCCCCTCCTTTT | + |
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Preference number: 4 (lower is better) Translates to: VSVMHSDSDWTFCTKPCSSRLSC*ISSPPF Trigger: AAAAGGAGGGGAAGATATCCAGCAAGACAGCCGCGA...GGAACAAGGTTTTGTACAAAAGGTCCAATCAGAATCACTGTGCATTACTGAGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000150727.8 ENSMUST00000176555.8 |
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| CDS-3UTR CCA 90 bp | ACTGCAGTGGGGGAATCCCAAATCTTTCAAGTTAACAGAAACCGAAAATGGAATCATGCTCCGCTCTGTTaGTCATGTACTGTGTGGCAA | + |
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Preference number: 4 (lower is better) Translates to: TAVGESQIFQVNRNRKWNHAPLC*SCTVWQ Trigger: TTGCCACACAGTACATGACCAACAGAGCGGAGCATG...ATTCCATTTTCGGTTTCTGTTAACTTGAAAGATTTGGGATTCCCCCACTGCAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000150727.8 ENSMUST00000175643.8 |
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| CDS-3UTR CCA 90 bp | ACTGCAGTGGGGGAATCCCAAATCTTTCAAGTTAACAGAAACCGAAAATGGAATTCCTCCACTAGTGCTTaGACTGTCATCAACTCTCTG | + |
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Preference number: 4 (lower is better) Translates to: TAVGESQIFQVNRNRKWNSSTSA*TVINSL Trigger: CAGAGAGTTGATGACAGTCCAAGCACTAGTGGAGGA...ATTCCATTTTCGGTTTCTGTTAACTTGAAAGATTTGGGATTCCCCCACTGCAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000150727.8 ENSMUST00000176555.8 |
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| CDS-3UTR CCA 90 bp | GATGACATACCATCCCCAAACAGTTTAAAATGTAATAACAACAGGCGACAGAACTGGTCATGTACTGTGTaGCAATACTGCCCACCAGAG | + |
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Preference number: 4 (lower is better) Translates to: DDIPSPNSLKCNNNRRQNWSCTV*QYCPPE Trigger: CTCTGGTGGGCAGTATTGCCACACAGTACATGACCA...GTTCTGTCGCCTGTTGTTATTACATTTTAAACTGTTTGGGGATGGTATGTCATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000150727.8 ENSMUST00000175643.8 |
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| CDS-3UTR CCA 90 bp | GACATACCATCCCCAAACAGTTTAAAATGTAATAACAACAGGCGACAGAACGGACTTCTGGCACCCACTTaGAATCATAGAACATGTGCC | + |
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Preference number: 4 (lower is better) Translates to: DIPSPNSLKCNNNRRQNGLLAPT*NHRTCA Trigger: GGCACATGTTCTATGATTCCAAGTGGGTGCCAGAAG...TCCGTTCTGTCGCCTGTTGTTATTACATTTTAAACTGTTTGGGGATGGTATGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000175643.8 |
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| CDS-3UTR TCA 90 bp | GGAGGGACAGATGACATACCATCCCCAAACAGTTTAAAATGTAATAACAACAGGTCTGCAAGCTCCTTCTaGATTCTTTTGGCACTGGTT | + |
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Preference number: 4 (lower is better) Translates to: GGTDDIPSPNSLKCNNNRSASSF*ILLALV Trigger: AACCAGTGCCAAAAGAATTCAGAAGGAGCTTGCAGA...CCTGTTGTTATTACATTTTAAACTGTTTGGGGATGGTATGTCATCTGTCCCTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000150727.8 ENSMUST00000175643.8 ENSMUST00000176555.8 |
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| CDS-3UTR TCA 90 bp | CCCAAACCACACAGTAACACAAAGCTCTGTATGAAAGGTCTTACTAGTATAGCTTCCTTTTTCTTAGGCTaGACTTGTTCTCGATCAGGT | + |
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Preference number: 4 (lower is better) Translates to: PKPHSNTKLCMKGLTSIASFFLG*TCSRSG Trigger: ACCTGATCGAGAACAAGTTCAGCCTAAGAAAAAGGA...AGCTATACTAGTAAGACCTTTCATACAGAGCTTTGTGTTACTGTGTGGTTTGGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000150727.8 ENSMUST00000176555.8 |
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| CDS-3UTR TCA 90 bp | CTGCAGTGGGGGAATCCCAAATCTTTCAAGTTAACAGAAACCGAAAATGGAATATCCTTTTTCTTAGGCTaGACTTGTTCTCGATCAGGT | + |
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Preference number: 4 (lower is better) Translates to: LQWGNPKSFKLTETENGISFFLG*TCSRSG Trigger: ACCTGATCGAGAACAAGTTCAGCCTAAGAAAAAGGA...TATTCCATTTTCGGTTTCTGTTAACTTGAAAGATTTGGGATTCCCCCACTGCAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000150727.8 ENSMUST00000176555.8 |
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| CDS-3UTR TCA 90 bp | GGCATTAATAATACAAGTATACATCAACTGATCCACAGTCAAAAGTGGCAGGTCTCTGCAAGCTCCTTCTaGATTCTTTTGGCACTGGTT | + |
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Preference number: 4 (lower is better) Translates to: GINNTSIHQLIHSQKWQVSASSF*ILLALV Trigger: AACCAGTGCCAAAAGAATTCAGAAGGAGCTTGCAGA...GACCTGCCACTTTTGACTGTGGATCAGTTGATGTATACTTGTATTATTAATGCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000150727.8 ENSMUST00000176555.8 |
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| CDS-3UTR CCA 90 bp | AGCACTACATTTAAGTATAAACGAGATATACTCCTGAATGTTTGTTTTCCCCGATGGTCATGTACTGTGTaGCAATACTGCCCACCAGAG | + |
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Preference number: 4 (lower is better) Translates to: STTFKYKRDILLNVCFPRWSCTV*QYCPPE Trigger: CTCTGGTGGGCAGTATTGCCACACAGTACATGACCA...TCGGGGAAAACAAACATTCAGGAGTATATCTCGTTTATACTTAAATGTAGTGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150727.8 |
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| CDS-3UTR CAA 90 bp | GAGCAGGTGGGTACTGATGCACTTGGTGAATGTGCTGGCACACAGCTGGCACACTCATGCTCCGCTCTGTaGGTCATGTACTGTGTGGCA | + |
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Preference number: 5 (lower is better) Translates to: EQVGTDALGECAGTQLAHSCSAL*VMYCVA Trigger: TGCCACACAGTACATGACCAACAGAGCGGAGCATGA...GTGTGCCAGCTGTGTGCCAGCACATTCACCAAGTGCATCAGTACCCACCTGCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000150727.8 ENSMUST00000175643.8 |
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| CDS CCA 90 bp | TGTTGTCTCCTTTGGGTCCAGCACTTAGAGCTTCTGGCACCCACTTaGAATCATAGAACATGTGCCTACAGTTGGGAGGGGGATCCAGCG | + |
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Preference number: 5 (lower is better) Translates to: CCLLWVQHLELLAPT*NHRTCAYSWEGDPA Trigger: CGCTGGATCCCCCTCCCAACTGTAGGCACATGTTCTATGATTCCAAGTGGGTGCCAGAAGCTCTAAGTGCTGGACCCAAAGGAGACAACA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000175643.8 |
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| CDS TCA 90 bp | CTACAGTTGGGAGGGGGATCCAGCGTGATTTCTGCAAGCTCCTTCTaGATTCTTTTGGCACTGGTTGACAGTTTCGCGGCTGTCTTGCTG | + |
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Preference number: 5 (lower is better) Translates to: LQLGGGSSVISASSF*ILLALVDSFAAVLL Trigger: CAGCAAGACAGCCGCGAAACTGTCAACCAGTGCCAAAAGAATTCAGAAGGAGCTTGCAGAAATCACGCTGGATCCCCCTCCCAACTGTAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000076133.10 ENSMUST00000124353.2 ENSMUST00000150727.8 ENSMUST00000151926.8 ENSMUST00000176555.8 |
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| CDS CCA 90 bp | AACGCTCTCCCGCTGATCTCCATCAGAACTTCCTCCACTAGTGCTTaGACTGTCATCAACTCTCTGCGCCTCAGTGGACATCTTAGATCC | + |
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Preference number: 5 (lower is better) Translates to: NALPLISIRTSSTSA*TVINSLRLSGHLRS Trigger: GGATCTAAGATGTCCACTGAGGCGCAGAGAGTTGATGACAGTCCAAGCACTAGTGGAGGAAGTTCTGATGGAGATCAGCGGGAGAGCGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151926.8 |
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| CDS GCA 90 bp | CCATCAGAACTTCCTCCACTAGTGCTTGGACTGTCATCAACTCTCTaGGCCTCAGTGGACATCTTAGATCCTCCTGTAGCAATTATGCAA | + |
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Preference number: 5 (lower is better) Translates to: PSELPPLVLGLSSTL*ASVDILDPPVAIMQ Trigger: TTGCATAATTGCTACAGGAGGATCTAAGATGTCCACTGAGGCGCAGAGAGTTGATGACAGTCCAAGCACTAGTGGAGGAAGTTCTGATGG 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151926.8 |
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| CDS-3UTR CAA 90 bp | GACATACCATCCCCAAACAGTTTAAAATGTAATAACAACAGGCGACAGAACGGATCATGCTCCGCTCTGTaGGTCATGTACTGTGTGGCA | + |
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Preference number: 5 (lower is better) Translates to: DIPSPNSLKCNNNRRQNGSCSAL*VMYCVA Trigger: TGCCACACAGTACATGACCAACAGAGCGGAGCATGA...TCCGTTCTGTCGCCTGTTGTTATTACATTTTAAACTGTTTGGGGATGGTATGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000150727.8 ENSMUST00000175643.8 |
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| CDS TCA 72 bp | GGAGGGGGATCCAGCGTGATTTCTGCAAGCTCCTTCTaGATTCTTTTGGCACTGGTTGACAGTTTCGCGGCT | + |
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Preference number: 6 (lower is better) Translates to: GGGSSVISASSF*ILLALVDSFAA Trigger: AGCCGCGAAACTGTCAACCAGTGCCAAAAGAATTCAGAAGGAGCTTGCAGAAATCACGCTGGATCCCCCTCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENSMUST00000076133.10 ENSMUST00000124353.2 ENSMUST00000150727.8 ENSMUST00000151926.8 ENSMUST00000175643.8 ENSMUST00000176555.8 |
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| CDS CCA 72 bp | CCGCTGATCTCCATCAGAACTTCCTCCACTAGTGCTTaGACTGTCATCAACTCTCTGCGCCTCAGTGGACAT | + |
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Preference number: 6 (lower is better) Translates to: PLISIRTSSTSA*TVINSLRLSGH Trigger: ATGTCCACTGAGGCGCAGAGAGTTGATGACAGTCCAAGCACTAGTGGAGGAAGTTCTGATGGAGATCAGCGG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000076133.10 ENSMUST00000124353.2 ENSMUST00000150727.8 ENSMUST00000151926.8 ENSMUST00000176555.8 |
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| CDS CCA 72 bp | CTTTGGGTCCAGCACTTAGAGCTTCTGGCACCCACTTaGAATCATAGAACATGTGCCTACAGTTGGGAGGGG | + |
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Preference number: 6 (lower is better) Translates to: LWVQHLELLAPT*NHRTCAYSWEG Trigger: CCCCTCCCAACTGTAGGCACATGTTCTATGATTCCAAGTGGGTGCCAGAAGCTCTAAGTGCTGGACCCAAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000175643.8 |
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| CDS GCA 72 bp | CTTCCTCCACTAGTGCTTGGACTGTCATCAACTCTCTaGGCCTCAGTGGACATCTTAGATCCTCCTGTAGCA | + |
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Preference number: 6 (lower is better) Translates to: LPPLVLGLSSTL*ASVDILDPPVA Trigger: TGCTACAGGAGGATCTAAGATGTCCACTGAGGCGCAGAGAGTTGATGACAGTCCAAGCACTAGTGGAGGAAG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151926.8 |
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| CDS CAA 72 bp | GCTGGATATCTTCCCCTCCTTTTTCTTAGGCTGAACTaGTTCTCGATCAGGTTCCTGCTGAACGCTCTCCCG | + |
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Preference number: 6 (lower is better) Translates to: AGYLPLLFLRLN*FSIRFLLNALP Trigger: CGGGAGAGCGTTCAGCAGGAACCTGATCGAGAACAAGTTCAGCCTAAGAAAAAGGAGGGGAAGATATCCAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENSMUST00000076133.10 ENSMUST00000124353.2 ENSMUST00000150727.8 ENSMUST00000151926.8 ENSMUST00000176555.8 ENSMUST00000176843.8 |
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