Pregenerated sensors for UBE2E1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021774Ensembl transcript IDs: ENSMUST00000022296.7, ENSMUST00000225612.2
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TATTCCACACTTACAGTTAACAGCTTAAGGTATTTCACTACAGGTTTCCACAAAAGCAGCTCTCTTCTGTaGCAGACAAGTCATGTAAGA | + |
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Preference number: 2 (lower is better) Translates to: YSTLTVNSLRYFTTGFHKSSSLL*QTSHVR Trigger: TCTTACATGACTTGTCTGTCACAGAAGAGAGCTGCT...TTTGTGGAAACCTGTAGTGAAATACCTTAAGCTGTTAACTGTAAGTGTGGAATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022296.7 |
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| 3UTR TCA 72 bp | CACAAATGCAGACGTAAGAAGTCTAAACCAATTGACTaGACAATTCCTATTCCACACTTACAGTTAACAGCT | + |
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Preference number: 3 (lower is better) Translates to: HKCRRKKSKPID*TIPIPHLQLTA Trigger: AGCTGTTAACTGTAAGTGTGGAATAGGAATTGTTCAGTCAATTGGTTTAGACTTCTTACGTCTGCATTTGTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022296.7 |
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| CDS-3UTR CCA 90 bp | CCACCCCCACCCTTTCAAAATCATAAGCAGCTCTCTTCTGTGACAGACAAGTCATCTCGGTCTGCTGGTTaGAGGACGAAGATGACGAGG | + |
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Preference number: 4 (lower is better) Translates to: PPPPFQNHKQLSSVTDKSSRSAG*RTKMTR Trigger: CCTCGTCATCTTCGTCCTCCAACCAGCAGACCGAGA...TGACTTGTCTGTCACAGAAGAGAGCTGCTTATGATTTTGAAAGGGTGGGGGTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022296.7 |
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| CDS-3UTR TCA 90 bp | TACATGGTGTCTTGTAGCCAGGTGTCCATTTTACATATACGAGGTAACAAACTCGTTGGAGGACGAAGATaGCGAGGAGCTGGTGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: YMVSCSQVSILHIRGNKLVGGRR*RGAGAG Trigger: GCCAGCACCAGCTCCTCGTCATCTTCGTCCTCCAAC...GAGTTTGTTACCTCGTATATGTAAAATGGACACCTGGCTACAAGACACCATGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022296.7 |
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| CDS-3UTR CCA 90 bp | AGCCAGGTGTCCATTTTACATATACGAGGTAACAAACTCATCTTTGCAAACTTGACGAGGAGCTGGTGCTaGCCCTCGAATCGTCATCCG | + |
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Preference number: 4 (lower is better) Translates to: SQVSILHIRGNKLIFANLTRSWC*PSNRHP Trigger: CGGATGACGATTCGAGGGCCAGCACCAGCTCCTCGT...CAAGTTTGCAAAGATGAGTTTGTTACCTCGTATATGTAAAATGGACACCTGGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022296.7 |
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| CDS-3UTR TCA 90 bp | TCTTGTAGCCAGGTGTCCATTTTACATATACGAGGTAACAAACTCATCTTTGCAGCGGAGGGTCTAAAGTaGTGTCTGCCAGCTCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: SCSQVSILHIRGNKLIFAAEGLK*CLPAPS Trigger: AGAAGGAGCTGGCAGACATCACTTTAGACCCTCCGC...TGCAAAGATGAGTTTGTTACCTCGTATATGTAAAATGGACACCTGGCTACAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022296.7 |
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| CDS-3UTR CCA 90 bp | AGCCAGGTGTCCATTTTACATATACGAGGTAACAAACTCATCTTTGCAAACTTGTCTGCCAGCTCCTTCTaGATCCTCTTAGCGCTGGTG | + |
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Preference number: 4 (lower is better) Translates to: SQVSILHIRGNKLIFANLSASSF*ILLALV Trigger: CACCAGCGCTAAGAGGATCCAGAAGGAGCTGGCAGA...CAAGTTTGCAAAGATGAGTTTGTTACCTCGTATATGTAAAATGGACACCTGGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022296.7 |
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| CDS-3UTR GCA 90 bp | TACATGGTGTCTTGTAGCCAGGTGTCCATTTTACATATACGAGGTAACAAACTCCCTTCTTTCTCGGTCTaGTGGTTGGAGGACGAAGAT | + |
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Preference number: 4 (lower is better) Translates to: YMVSCSQVSILHIRGNKLPSFSV*WLEDED Trigger: ATCTTCGTCCTCCAACCAGCAGACCGAGAAAGAAGG...GAGTTTGTTACCTCGTATATGTAAAATGGACACCTGGCTACAAGACACCATGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022296.7 |
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| CDS-3UTR GCA 90 bp | ACACATGCTTTCTTTTGTACTAAAAGTCAGCTAATCTTGCAAAGTTTCAGCTCTCCTTGGGACCAGCACTaGAGTTTGGCGGAGGGTCTA | + |
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Preference number: 4 (lower is better) Translates to: THAFFCTKSQLILQSFSSPWDQH*SLAEGL Trigger: TAGACCCTCCGCCAAACTGCAGTGCTGGTCCCAAGG...AGAGCTGAAACTTTGCAAGATTAGCTGACTTTTAGTACAAAAGAAAGCATGTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022296.7 |
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| CDS-3UTR GCA 90 bp | TATTCCACACTTACAGTTAACAGCTTAAGGTATTTCACTACAGGTTTCCACAAAATGACGAGGAGCTGGTaGTGGCCCTCGAATCGTCAT | + |
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Preference number: 4 (lower is better) Translates to: YSTLTVNSLRYFTTGFHKMTRSW*WPSNRH Trigger: ATGACGATTCGAGGGCCAGCACCAGCTCCTCGTCAT...TTTGTGGAAACCTGTAGTGAAATACCTTAAGCTGTTAACTGTAAGTGTGGAATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022296.7 |
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| CDS-3UTR CCA 90 bp | TATTCCACACTTACAGTTAACAGCTTAAGGTATTTCACTACAGGTTTCCACAAAAAGATGACGAGGAGCTaGTGCTGGCCCTCGAATCGT | + |
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Preference number: 4 (lower is better) Translates to: YSTLTVNSLRYFTTGFHKKMTRS*CWPSNR Trigger: ACGATTCGAGGGCCAGCACCAGCTCCTCGTCATCTT...TTTGTGGAAACCTGTAGTGAAATACCTTAAGCTGTTAACTGTAAGTGTGGAATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022296.7 |
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| CDS-3UTR TCA 90 bp | TACATGGTGTCTTGTAGCCAGGTGTCCATTTTACATATACGAGGTAACAAACTCAGGACCCAGAATGGTTaGTCTCCACTCATAGATGTT | + |
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Preference number: 4 (lower is better) Translates to: YMVSCSQVSILHIRGNKLRTQNG*SPLIDV Trigger: AACATCTATGAGTGGAGATCAACCATTCTGGGTCCT...GAGTTTGTTACCTCGTATATGTAAAATGGACACCTGGCTACAAGACACCATGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022296.7 |
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| CDS-3UTR GCA 90 bp | TATTCCACACTTACAGTTAACAGCTTAAGGTATTTCACTACAGGTTTCCACAAATCTTCTTGGGGGTGCTaGCTTCTTTCTCGGTCTGCT | + |
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Preference number: 4 (lower is better) Translates to: YSTLTVNSLRYFTTGFHKSSWGC*LLSRSA Trigger: AGCAGACCGAGAAAGAAGGCAGCACCCCCAAGAAGA...TTTGTGGAAACCTGTAGTGAAATACCTTAAGCTGTTAACTGTAAGTGTGGAATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022296.7 |
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| CDS-3UTR TCA 90 bp | TATTCCACACTTACAGTTAACAGCTTAAGGTATTTCACTACAGGTTTCCACAAAGCAGTCTGTAAGGAGTaGGCAGATAGAAAGGAGGAC | + |
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Preference number: 4 (lower is better) Translates to: YSTLTVNSLRYFTTGFHKAVCKE*ADRKED Trigger: GTCCTCCTTTCTATCTGCTCACTCCTTACAGACTGC...TTTGTGGAAACCTGTAGTGAAATACCTTAAGCTGTTAACTGTAAGTGTGGAATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022296.7 |
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| CDS-3UTR CCA 90 bp | ACACATGCTTTCTTTTGTACTAAAAGTCAGCTAATCTTGCAAAGTTTCAGCTCTTCTTTCTCGGTCTGCTaGTTGGAGGACGAAGATGAC | + |
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Preference number: 4 (lower is better) Translates to: THAFFCTKSQLILQSFSSSFSVC*LEDEDD Trigger: GTCATCTTCGTCCTCCAACCAGCAGACCGAGAAAGA...AGAGCTGAAACTTTGCAAGATTAGCTGACTTTTAGTACAAAAGAAAGCATGTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022296.7 |
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| CDS-3UTR CCA 90 bp | GCTATTACCAGTTTGTCTACTGTAGCAAGATACCTTAAGTTACAACAAAATCCTTACTCTCCTTCTTCTTaGGGGTGCTGCCTTCTTTCT | + |
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Preference number: 4 (lower is better) Translates to: AITSLSTVARYLKLQQNPYSPSS*GCCLLS Trigger: AGAAAGAAGGCAGCACCCCCAAGAAGAAGGAGAGTA...AGGATTTTGTTGTAACTTAAGGTATCTTGCTACAGTAGACAAACTGGTAATAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022296.7 |
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| CDS-3UTR CCA 90 bp | TCTTGTAGCCAGGTGTCCATTTTACATATACGAGGTAACAAACTCATCTTTGCAACGAAATGTAACCTTTaGAGGCTTGAAAGGATACTC | + |
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Preference number: 4 (lower is better) Translates to: SCSQVSILHIRGNKLIFATKCNL*RLERIL Trigger: GAGTATCCTTTCAAGCCTCCAAAGGTTACATTTCGT...TGCAAAGATGAGTTTGTTACCTCGTATATGTAAAATGGACACCTGGCTACAAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022296.7 |
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| 3UTR CAA 72 bp | TGCAAAGTTTCAGCTCTAAAAGTCGCTATTACCAGTTaGTCTACTGTAGCAAGATACCTTAAGTTACAACAA | + |
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Preference number: 4 (lower is better) Translates to: CKVSALKVAITS*STVARYLKLQQ Trigger: TTGTTGTAACTTAAGGTATCTTGCTACAGTAGACAAACTGGTAATAGCGACTTTTAGAGCTGAAACTTTGCA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022296.7 |
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| CDS-3UTR CCA 90 bp | GCTATTACCAGTTTGTCTACTGTAGCAAGATACCTTAAGTTACAACAAAATCCTCTTGAAAGGATACTCTaGTGTAAAAGTAATGTCAAG | + |
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Preference number: 4 (lower is better) Translates to: AITSLSTVARYLKLQQNPLERIL*CKSNVK Trigger: CTTGACATTACTTTTACACCAGAGTATCCTTTCAAG...AGGATTTTGTTGTAACTTAAGGTATCTTGCTACAGTAGACAAACTGGTAATAGC 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022296.7 |
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| CDS CCA 90 bp | TCTCCTTCTTCTTGGGGGTGCTGCCTTCTTTCTCGGTCTGCTGGTTaGAGGACGAAGATGACGAGGAGCTGGTGCTGGCCCTCGAATCGT | + |
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Preference number: 5 (lower is better) Translates to: SPSSWGCCLLSRSAG*RTKMTRSWCWPSNR Trigger: ACGATTCGAGGGCCAGCACCAGCTCCTCGTCATCTTCGTCCTCCAACCAGCAGACCGAGAAAGAAGGCAGCACCCCCAAGAAGAAGGAGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022296.7 |
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| CDS CCA 90 bp | TTACTCTCCTTCTTCTTGGGGGTGCTGCCTTCTTTCTCGGTCTGCTaGTTGGAGGACGAAGATGACGAGGAGCTGGTGCTGGCCCTCGAA | + |
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Preference number: 5 (lower is better) Translates to: LLSFFLGVLPSFSVC*LEDEDDEELVLALE Trigger: TTCGAGGGCCAGCACCAGCTCCTCGTCATCTTCGTCCTCCAACCAGCAGACCGAGAAAGAAGGCAGCACCCCCAAGAAGAAGGAGAGTAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022296.7 |
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| CDS-3UTR CAA 90 bp | TATTCCACACTTACAGTTAACAGCTTAAGGTATTTCACTACAGGTTTCCACAAATTCTCGGTCTGCTGGTaGGAGGACGAAGATGACGAG | + |
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Preference number: 5 (lower is better) Translates to: YSTLTVNSLRYFTTGFHKFSVCW*EDEDDE Trigger: CTCGTCATCTTCGTCCTCCAACCAGCAGACCGAGAA...TTTGTGGAAACCTGTAGTGAAATACCTTAAGCTGTTAACTGTAAGTGTGGAATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022296.7 |
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| CDS-3UTR CAA 90 bp | TATTCCACACTTACAGTTAACAGCTTAAGGTATTTCACTACAGGTTTCCACAAATTACTCTCCTTCTTCTaGGGGGTGCTGCCTTCTTTC | + |
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Preference number: 5 (lower is better) Translates to: YSTLTVNSLRYFTTGFHKLLSFF*GVLPSF Trigger: GAAAGAAGGCAGCACCCCCAAGAAGAAGGAGAGTAA...TTTGTGGAAACCTGTAGTGAAATACCTTAAGCTGTTAACTGTAAGTGTGGAATA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022296.7 |
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| CDS CAA 90 bp | CTCTCCTTCTTCTTGGGGGTGCTGCCTTCTTTCTCGGTCTGCTGGTaGGAGGACGAAGATGACGAGGAGCTGGTGCTGGCCCTCGAATCG | + |
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Preference number: 6 (lower is better) Translates to: LSFFLGVLPSFSVCW*EDEDDEELVLALES Trigger: CGATTCGAGGGCCAGCACCAGCTCCTCGTCATCTTCGTCCTCCAACCAGCAGACCGAGAAAGAAGGCAGCACCCCCAAGAAGAAGGAGAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022296.7 |
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| CDS TCA 72 bp | ACCTTCATACACAGACCCTGGAGGACCCAGAATGGTTaGTCTCCACTCATAGATGTTGTCACCCTTGGGACC | + |
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Preference number: 6 (lower is better) Translates to: TFIHRPWRTQNG*SPLIDVVTLGT Trigger: GGTCCCAAGGGTGACAACATCTATGAGTGGAGATCAACCATTCTGGGTCCTCCAGGGTCTGTGTATGAAGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022296.7 ENSMUST00000225612.2 |
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| CDS CAA 90 bp | TCCTTCTGGATCCTCTTAGCGCTGGTGGAGAGAAGCTTCGAATTTTaGCTCATGCTGACTTTACTCTCCTTCTTCTTGGGGGTGCTGCCT | + |
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Preference number: 6 (lower is better) Translates to: SFWILLALVERSFEF*LMLTLLSFFLGVLP Trigger: AGGCAGCACCCCCAAGAAGAAGGAGAGTAAAGTCAGCATGAGCAAAAATTCGAAGCTTCTCTCCACCAGCGCTAAGAGGATCCAGAAGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022296.7 |
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| CDS TCA 72 bp | CGCTGGTGGAGAGAAGCTTCGAATTTTTGCTCATGCTaGCTTTACTCTCCTTCTTCTTGGGGGTGCTGCCTT | + |
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Preference number: 6 (lower is better) Translates to: RWWREASNFCSC*LYSPSSWGCCL Trigger: AAGGCAGCACCCCCAAGAAGAAGGAGAGTAAAGTCAGCATGAGCAAAAATTCGAAGCTTCTCTCCACCAGCG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022296.7 |
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| CDS CAA 90 bp | AGAAGCTTCGAATTTTTGCTCATGCTGACTTTACTCTCCTTCTTCTaGGGGGTGCTGCCTTCTTTCTCGGTCTGCTGGTTGGAGGACGAA | + |
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Preference number: 6 (lower is better) Translates to: RSFEFLLMLTLLSFF*GVLPSFSVCWLEDE Trigger: TTCGTCCTCCAACCAGCAGACCGAGAAAGAAGGCAGCACCCCCAAGAAGAAGGAGAGTAAAGTCAGCATGAGCAAAAATTCGAAGCTTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022296.7 |
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| CDS CAA 72 bp | GAATTTTTGCTCATGCTGACTTTACTCTCCTTCTTCTaGGGGGTGCTGCCTTCTTTCTCGGTCTGCTGGTTG | + |
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Preference number: 6 (lower is better) Translates to: EFLLMLTLLSFF*GVLPSFSVCWL Trigger: CAACCAGCAGACCGAGAAAGAAGGCAGCACCCCCAAGAAGAAGGAGAGTAAAGTCAGCATGAGCAAAAATTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022296.7 |
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| CDS CAA 72 bp | AGGAGGACTTTCGAGATGGTTAGGGCTGGGCTCCAGTaGTCTTTCAATATGTCCAAGCAAATAACTCCTTGG | + |
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Preference number: 6 (lower is better) Translates to: RRTFEMVRAGLQ*SFNMSKQITPW Trigger: CCAAGGAGTTATTTGCTTGGACATATTGAAAGACAACTGGAGCCCAGCCCTAACCATCTCGAAAGTCCTCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022296.7 ENSMUST00000225612.2 |
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| CDS CAA 90 bp | CAGATAGAAAGGAGGACTTTCGAGATGGTTAGGGCTGGGCTCCAGTaGTCTTTCAATATGTCCAAGCAAATAACTCCTTGGCTATTAATA | + |
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Preference number: 6 (lower is better) Translates to: QIERRTFEMVRAGLQ*SFNMSKQITPWLLI Trigger: TATTAATAGCCAAGGAGTTATTTGCTTGGACATATTGAAAGACAACTGGAGCCCAGCCCTAACCATCTCGAAAGTCCTCCTTTCTATCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022296.7 ENSMUST00000225612.2 |
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