Pregenerated sensors for UBE2D3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078578Ensembl transcript IDs: ENSMUST00000166033.6, ENSMUST00000197134.3, ENSMUST00000197539.5, ENSMUST00000197859.5
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATAGGTGACCTCAAGTCCAGTCCAGTGTCTATACATTCAGAATGTTaGTTTTCCAGGTACTCTGTTCTCTTAAACCTGGAGAAGCCTCTA | + |
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Preference number: 1 (lower is better) Translates to: IGDLKSSPVSIHSEC*FSRYSVLLNLEKPL Trigger: TAGAGGCTTCTCCAGGTTTAAGAGAACAGAGTACCTGGAAAACCAACATTCTGAATGTATAGACACTGGACTGGACTTGAGGTCACCTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197859.5 |
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| 3UTR GCA 90 bp | AAAGGTGGTAGATGGGAGGAATTTGAAAGCCAACTAGAGATCCACTaGTTTGTAAAAATGTTTGTCATATCTGGCTTTCACGACACAGGC | + |
|
Preference number: 1 (lower is better) Translates to: KGGRWEEFESQLEIH*FVKMFVISGFHDTG Trigger: GCCTGTGTCGTGAAAGCCAGATATGACAAACATTTTTACAAAGCAGTGGATCTCTAGTTGGCTTTCAAATTCCTCCCATCTACCACCTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000197859.5 |
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| 3UTR CCA 90 bp | CAATGGTTTAAGGACGTCATCTCTGTAAATACCAAAGGTGGTAGATaGGAGGAATTTGAAAGCCAACTAGAGATCCACTGCTTTGTAAAA | + |
|
Preference number: 1 (lower is better) Translates to: QWFKDVISVNTKGGR*EEFESQLEIHCFVK Trigger: TTTTACAAAGCAGTGGATCTCTAGTTGGCTTTCAAATTCCTCCCATCTACCACCTTTGGTATTTACAGAGATGACGTCCTTAAACCATTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197859.5 |
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| 3UTR-3UTR GCA 90 bp | ATCTCAATGGATAGTCAATATCCCACAGTTAAGTCACTTCAACACAGCCTCATGGCTGCCAGAATCATGTaGAGCGTATTAAAGCTACAC | + |
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Preference number: 2 (lower is better) Translates to: ISMDSQYPTVKSLQHSLMAARIM*SVLKLH Trigger: GTGTAGCTTTAATACGCTGCACATGATTCTGGCAGC...CATGAGGCTGTGTTGAAGTGACTTAACTGTGGGATATTGACTATCCATTGAGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000166033.6 ENSMUST00000197134.3 ENSMUST00000197539.5 ENSMUST00000197859.5 |
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| 3UTR-3UTR GCA 90 bp | CAGTCCAGTGTCTATACATTCAGAATGTTGGTTTTCCAGGTACTCTGTTCTCTTGCTGCCAGAATCATGTaGAGCGTATTAAAGCTACAC | + |
|
Preference number: 2 (lower is better) Translates to: QSSVYTFRMLVFQVLCSLAARIM*SVLKLH Trigger: GTGTAGCTTTAATACGCTGCACATGATTCTGGCAGC...AAGAGAACAGAGTACCTGGAAAACCAACATTCTGAATGTATAGACACTGGACTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197859.5 |
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| 3UTR-3UTR CCA 90 bp | CAGTCCAGTGTCTATACATTCAGAATGTTGGTTTTCCAGGTACTCTGTTCTCTTACCAAAGGTGGTAGATaGGAGGAATTTGAAAGCCAA | + |
|
Preference number: 2 (lower is better) Translates to: QSSVYTFRMLVFQVLCSLTKGGR*EEFESQ Trigger: TTGGCTTTCAAATTCCTCCCATCTACCACCTTTGGT...AAGAGAACAGAGTACCTGGAAAACCAACATTCTGAATGTATAGACACTGGACTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197859.5 |
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| 3UTR CAA 90 bp | GTTTGTCATATCTGGCTTTCACGACACAGGCCTAATAAAGCTGTTTaGAGTACAGGTCTCAGAAAGGACTTTTTAAGAGTCAAAGAATAC | + |
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Preference number: 2 (lower is better) Translates to: VCHIWLSRHRPNKAV*STGLRKDFLRVKEY Trigger: GTATTCTTTGACTCTTAAAAAGTCCTTTCTGAGACCTGTACTCAAAACAGCTTTATTAGGCCTGTGTCGTGAAAGCCAGATATGACAAAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000197859.5 |
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| 3UTR-3UTR CCA 90 bp | CAGTCCAGTGTCTATACATTCAGAATGTTGGTTTTCCAGGTACTCTGTTCTCTTACAAATCCATCTCAATaGATAGTCAATATCCCACAG | + |
|
Preference number: 2 (lower is better) Translates to: QSSVYTFRMLVFQVLCSLTNPSQ*IVNIPQ Trigger: CTGTGGGATATTGACTATCCATTGAGATGGATTTGT...AAGAGAACAGAGTACCTGGAAAACCAACATTCTGAATGTATAGACACTGGACTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197859.5 |
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| 3UTR CAA 72 bp | ATCTGGCTTTCACGACACAGGCCTAATAAAGCTGTTTaGAGTACAGGTCTCAGAAAGGACTTTTTAAGAGTC | + |
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Preference number: 4 (lower is better) Translates to: IWLSRHRPNKAV*STGLRKDFLRV Trigger: GACTCTTAAAAAGTCCTTTCTGAGACCTGTACTCAAAACAGCTTTATTAGGCCTGTGTCGTGAAAGCCAGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000197859.5 |
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| 3UTR CAA 72 bp | TCTTATGCAGATGTCACTATTAAGACATTTAGTGACTaGCATTGGGTTCCTCATAAAATAGGAGACAAATTC | + |
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Preference number: 4 (lower is better) Translates to: SYADVTIKTFSD*HWVPHKIGDKF Trigger: GAATTTGTCTCCTATTTTATGAGGAACCCAATGCAAGTCACTAAATGTCTTAATAGTGACATCTGCATAAGA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197859.5 |
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| CDS-3UTR CAA 90 bp | ATCTCAATGGATAGTCAATATCCCACAGTTAAGTCACTTCAACACAGCCTCATGTCTCTGTCCACTCTCTaGCTAACCTATTGTACTTAT | + |
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Preference number: 5 (lower is better) Translates to: ISMDSQYPTVKSLQHSLMSLSTL*LTYCTY Trigger: ATAAGTACAATAGGTTAGCAAGAGAGTGGACAGAGA...CATGAGGCTGTGTTGAAGTGACTTAACTGTGGGATATTGACTATCCATTGAGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197134.3 |
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| CDS-3UTR CAA 90 bp | ATCTCAATGGATAGTCAATATCCCACAGTTAAGTCACTTCAACACAGCCTCATGTCTCTTGCTAACCTATaGTACTTATCTCTGTCTGTT | + |
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Preference number: 5 (lower is better) Translates to: ISMDSQYPTVKSLQHSLMSLANL*YLSLSV Trigger: AACAGACAGAGATAAGTACAATAGGTTAGCAAGAGA...CATGAGGCTGTGTTGAAGTGACTTAACTGTGGGATATTGACTATCCATTGAGAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000197134.3 |
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