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Pregenerated sensors for UBE2D2B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000063447

Ensembl transcript IDs: ENSMUST00000072578.8

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TACAGTATTTCTGGTGCGTGCAACATGCAGCGGTACTGTATCAGGTaGAGACGGTGCACCAGGGAGGATGAGGCAGGTACAGCGTGGGCG +
Preference number: 1 (lower is better)
Translates to: YSISGACNMQRYCIR*RRCTREDEAGTAWA
Trigger: CGCCCACGCTGTACCTGCCTCATCCTCCCTGGTGCACCGTCTTCACCTGATACAGTACCGCTGCATGTTGCACGCACCAGAAATACTGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072578.8
3UTR TCA 90 bp AGCAATCTCATTGTCTCTTATAGATTGGGGGACCTTTACCCCTTCTaGGCAGTATTGTGTACCCACCACCCTCACACCTTGTGGTTATCC +
Preference number: 1 (lower is better)
Translates to: SNLIVSYRLGDLYPF*AVLCTHHPHTLWLS
Trigger: GGATAACCACAAGGTGTGAGGGTGGTGGGTACACAATACTGCTCAGAAGGGGTAAAGGTCCCCCAATCTATAAGAGACAATGAGATTGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000072578.8
3UTR TCA 90 bp GTAAATGGCTGGGATAATTGGTTTATTACACACATGAATCATTCTTaGATGTACAAGCTCCAGAAGAGCAATAGGGTCTTCATACACAAG +
Preference number: 1 (lower is better)
Translates to: VNGWDNWFITHMNHS*MYKLQKSNRVFIHK
Trigger: CTTGTGTATGAAGACCCTATTGCTCTTCTGGAGCTTGTACATTCAAGAATGATTCATGTGTGTAATAAACCAATTATCCCAGCCATTTAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072578.8
3UTR CCA 90 bp ATTAGTGATGAGTCAACTAAGAAACCACAAATAAACCAAAGAATATaGAGAGAAAGTGTGAAAGAAGGAAGGTTGAGTCATCGAGGTATA +
Preference number: 1 (lower is better)
Translates to: ISDESTKKPQINQRI*RESVKEGRLSHRGI
Trigger: TATACCTCGATGACTCAACCTTCCTTCTTTCACACTTTCTCTCCATATTCTTTGGTTTATTTGTGGTTTCTTAGTTGACTCATCACTAAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072578.8
3UTR-3UTR CCA 90 bp AAAGCAATCTCATTGTCTCTTATAGATTGGGGGACCTTTACCCCTTCTGAGCAGGGTACAGCGTGGGCGTaGGTTCATGGGAAACAGTCC +
Preference number: 2 (lower is better)
Translates to: KAISLSLIDWGTFTPSEQGTAWA*VHGKQS
Trigger: GGACTGTTTCCCATGAACCCACGCCCACGCTGTACC...CTGCTCAGAAGGGGTAAAGGTCCCCCAATCTATAAGAGACAATGAGATTGCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000072578.8
3UTR-3UTR CCA 90 bp AGGTTGAGTCATCGAGGTATAAAAGATTTTGGGAACAAAGCCAGTCACACTTTAGAGGCAGGTACAGCGTaGGCGTGGGTTCATGGGAAA +
Preference number: 2 (lower is better)
Translates to: RLSHRGIKDFGNKASHTLEAGTA*AWVHGK
Trigger: TTTCCCATGAACCCACGCCCACGCTGTACCTGCCTC...TAAAGTGTGACTGGCTTTGTTCCCAAAATCTTTTATACCTCGATGACTCAACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072578.8
3UTR-3UTR CCA 90 bp AGGTTGAGTCATCGAGGTATAAAAGATTTTGGGAACAAAGCCAGTCACACTTTACACCCTCACACCTTGTaGTTATCCAGATTTAAGTCA +
Preference number: 2 (lower is better)
Translates to: RLSHRGIKDFGNKASHTLHPHTL*LSRFKS
Trigger: TGACTTAAATCTGGATAACCACAAGGTGTGAGGGTG...TAAAGTGTGACTGGCTTTGTTCCCAAAATCTTTTATACCTCGATGACTCAACCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072578.8
3UTR CAA 90 bp CAAATAAACCAAAGAATATGGAGAGAAAGTGTGAAAGAAGGAAGGTaGAGTCATCGAGGTATAAAAGATTTTGGGAACAAAGCCAGTCAC +
Preference number: 2 (lower is better)
Translates to: QINQRIWRESVKEGR*SHRGIKDFGNKASH
Trigger: GTGACTGGCTTTGTTCCCAAAATCTTTTATACCTCGATGACTCAACCTTCCTTCTTTCACACTTTCTCTCCATATTCTTTGGTTTATTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072578.8
3UTR CCA 72 bp AGACGGTGCACCAGGGAGGATGAGGCAGGTACAGCGTaGGCGTGGGTTCATGGGAAACAGTCCGGTGGGAAT +
Preference number: 3 (lower is better)
Translates to: RRCTREDEAGTA*AWVHGKQSGGN
Trigger: ATTCCCACCGGACTGTTTCCCATGAACCCACGCCCACGCTGTACCTGCCTCATCCTCCCTGGTGCACCGTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072578.8
3UTR-3UTR CAA 90 bp GAGTCATCGAGGTATAAAAGATTTTGGGAACAAAGCCAGTCACACTTTATGGGCCACCACCCTCACACCTaGTGGTTATCCAGATTTAAG +
Preference number: 3 (lower is better)
Translates to: ESSRYKRFWEQSQSHFMGHHPHT*WLSRFK
Trigger: CTTAAATCTGGATAACCACAAGGTGTGAGGGTGGTG...GCCCATAAAGTGTGACTGGCTTTGTTCCCAAAATCTTTTATACCTCGATGACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072578.8
3UTR GCA 72 bp TCAATAAGGAAAACTTTTAATCTCACATCCAGGTTATaGCTGGAGAACGCTCGTCTGCTAGGAGACAGTGTT +
Preference number: 3 (lower is better)
Translates to: SIRKTFNLTSRL*LENARLLGDSV
Trigger: AACACTGTCTCCTAGCAGACGAGCGTTCTCCAGGCATAACCTGGATGTGAGATTAAAAGTTTTCCTTATTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072578.8
CDS-3UTR CCA 90 bp AGGAAGGTTGAGTCATCGAGGTATAAAAGATTTTGGGAACAAAGCCAGTCACACTGTGCTGGGGGATCCTaGGCCAGGTCGTTCAGTTCC +
Preference number: 4 (lower is better)
Translates to: RKVESSRYKRFWEQSQSHCAGGS*ARSFSS
Trigger: GGAACTGAACGACCTGGCCCAGGATCCCCCAGCACA...GTGTGACTGGCTTTGTTCCCAAAATCTTTTATACCTCGATGACTCAACCTTCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000072578.8
CDS-3UTR TCA 90 bp AGGAAGGTTGAGTCATCGAGGTATAAAAGATTTTGGGAACAAAGCCAGTCACACCACACAACAGAGAACTaGTGGACAAAAGTACTTTGG +
Preference number: 4 (lower is better)
Translates to: RKVESSRYKRFWEQSQSHHTTEN*WTKVLW
Trigger: CCAAAGTACTTTTGTCCATCAGTTCTCTGTTGTGTG...GTGTGACTGGCTTTGTTCCCAAAATCTTTTATACCTCGATGACTCAACCTTCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000072578.8
CDS-3UTR CCA 90 bp GAGTCATCGAGGTATAAAAGATTTTGGGAACAAAGCCAGTCACACTTTATGGGCGAAGGGGTACTCTGTTaGGAAATCAATTGTCAAGAA +
Preference number: 4 (lower is better)
Translates to: ESSRYKRFWEQSQSHFMGEGVLC*EINCQE
Trigger: TTCTTGACAATTGATTTCCCAACAGAGTACCCCTTC...GCCCATAAAGTGTGACTGGCTTTGTTCCCAAAATCTTTTATACCTCGATGACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000072578.8
3UTR CAA 72 bp CAAAGAATATGGAGAGAAAGTGTGAAAGAAGGAAGGTaGAGTCATCGAGGTATAAAAGATTTTGGGAACAAA +
Preference number: 4 (lower is better)
Translates to: QRIWRESVKEGR*SHRGIKDFGNK
Trigger: TTTGTTCCCAAAATCTTTTATACCTCGATGACTCAACCTTCCTTCTTTCACACTTTCTCTCCATATTCTTTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072578.8
CDS-3UTR CAA 90 bp AATCTCACATCCAGGTTATGCCTGGAGAACGCTCGTCTGCTAGGAGACAGTGTTTCCCGAGCTGTTCTGTaGTACTTGTCTCTATCTGTT +
Preference number: 5 (lower is better)
Translates to: NLTSRLCLENARLLGDSVSRAVL*YLSLSV
Trigger: AACAGATAGAGACAAGTACAACAGAACAGCTCGGGA...AACACTGTCTCCTAGCAGACGAGCGTTCTCCAGGCATAACCTGGATGTGAGATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072578.8
CDS-3UTR CAA 90 bp GGAGAACGCTCGTCTGCTAGGAGACAGTGTTGGTACAGTATTTCTGGTGCGTGCATGGACAAAAGTACTTaGGAAATAGTTAGTGCTGGA +
Preference number: 5 (lower is better)
Translates to: GERSSARRQCWYSISGACMDKST*EIVSAG
Trigger: TCCAGCACTAACTATTTCCAAAGTACTTTTGTCCAT...GCACGCACCAGAAATACTGTACCAACACTGTCTCCTAGCAGACGAGCGTTCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072578.8
CDS-3UTR CAA 90 bp GAGTCATCGAGGTATAAAAGATTTTGGGAACAAAGCCAGTCACACTTTATGGGCAGGTCGTTCAGTTCCTaGTGGATTCTCTTCAGAGCC +
Preference number: 5 (lower is better)
Translates to: ESSRYKRFWEQSQSHFMGRSFSS*WILFRA
Trigger: GGCTCTGAAGAGAATCCACAAGGAACTGAACGACCT...GCCCATAAAGTGTGACTGGCTTTGTTCCCAAAATCTTTTATACCTCGATGACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072578.8
CDS-3UTR CAA 90 bp AGGAAAACTTTTAATCTCACATCCAGGTTATGCCTGGAGAACGCTCGTCTGCTAAAGGGATCATCTGGATaGGGGTCACACAACAGAGAA +
Preference number: 5 (lower is better)
Translates to: RKTFNLTSRLCLENARLLKGSSG*GSHNRE
Trigger: TTCTCTGTTGTGTGACCCCAATCCAGATGATCCCTT...TAGCAGACGAGCGTTCTCCAGGCATAACCTGGATGTGAGATTAAAAGTTTTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000072578.8