RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for UBE2D1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000019927

Ensembl transcript IDs: ENSMUST00000020085.7

Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGCGTCTGGTTGCTTTCTCAGTCACGTCACAGATCTTGCTGGAGATaGAGGGGGTCCAAGTGTCTCGGAAACCGAAAGAAAGGTCCTCTT +
Preference number: 1 (lower is better)
Translates to: SVWLLSQSRHRSCWR*RGSKCLGNRKKGPL
Trigger: AAGAGGACCTTTCTTTCGGTTTCCGAGACACTTGGACCCCCTGCATCTCCAGCAAGATCTGTGACGTGACTGAGAAAGCAACCAGACGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020085.7
3UTR GCA 90 bp AGAAAGAAAAGCGTCTGGTTGCTTTCTCAGTCACGTCACAGATCTTaGTGGAGATGCAGGGGGTCCAAGTGTCTCGGAAACCGAAAGAAA +
Preference number: 1 (lower is better)
Translates to: RKKSVWLLSQSRHRS*WRCRGSKCLGNRKK
Trigger: TTTCTTTCGGTTTCCGAGACACTTGGACCCCCTGCATCTCCAGCAAGATCTGTGACGTGACTGAGAAAGCAACCAGACGCTTTTCTTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020085.7
3UTR CCA 90 bp GTTTCTCGGGTGAAAAACGTCTCGTTTCAGAGAAAGAAAAGCGTCTaGTTGCTTTCTCAGTCACGTCACAGATCTTGCTGGAGATGCAGG +
Preference number: 1 (lower is better)
Translates to: VSRVKNVSFQRKKSV*LLSQSRHRSCWRCR
Trigger: CCTGCATCTCCAGCAAGATCTGTGACGTGACTGAGAAAGCAACCAGACGCTTTTCTTTCTCTGAAACGAGACGTTTTTCACCCGAGAAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020085.7
3UTR CAA 90 bp GAGAAAGAAAAGCGTCTGGTTGCTTTCTCAGTCACGTCACAGATCTaGCTGGAGATGCAGGGGGTCCAAGTGTCTCGGAAACCGAAAGAA +
Preference number: 2 (lower is better)
Translates to: EKEKRLVAFSVTSQI*LEMQGVQVSRKPKE
Trigger: TTCTTTCGGTTTCCGAGACACTTGGACCCCCTGCATCTCCAGCAAGATCTGTGACGTGACTGAGAAAGCAACCAGACGCTTTTCTTTCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020085.7
3UTR CAA 90 bp TCTCGGGTGAAAAACGTCTCGTTTCAGAGAAAGAAAAGCGTCTGGTaGCTTTCTCAGTCACGTCACAGATCTTGCTGGAGATGCAGGGGG +
Preference number: 2 (lower is better)
Translates to: SRVKNVSFQRKKSVW*LSQSRHRSCWRCRG
Trigger: CCCCCTGCATCTCCAGCAAGATCTGTGACGTGACTGAGAAAGCAACCAGACGCTTTTCTTTCTCTGAAACGAGACGTTTTTCACCCGAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020085.7
3UTR-3UTR GCA 90 bp GCAGTTAATTCATCATCAGCTGTTGGGAGCTTCAATACTGTTCACGGGGGATGGAGATCTTGCTGGAGATaGAGGGGGTCCAAGTGTCTC +
Preference number: 2 (lower is better)
Translates to: AVNSSSAVGSFNTVHGGWRSCWR*RGSKCL
Trigger: GAGACACTTGGACCCCCTGCATCTCCAGCAAGATCT...CCATCCCCCGTGAACAGTATTGAAGCTCCCAACAGCTGATGATGAATTAACTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000020085.7
3UTR-3UTR CCA 90 bp GCAGTTAATTCATCATCAGCTGTTGGGAGCTTCAATACTGTTCACGGGGGATGGAGAAAGAAAAGCGTCTaGTTGCTTTCTCAGTCACGT +
Preference number: 2 (lower is better)
Translates to: AVNSSSAVGSFNTVHGGWRKKSV*LLSQSR
Trigger: ACGTGACTGAGAAAGCAACCAGACGCTTTTCTTTCT...CCATCCCCCGTGAACAGTATTGAAGCTCCCAACAGCTGATGATGAATTAACTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020085.7
3UTR-3UTR GCA 90 bp GAGAAATACAGTGTGCAGATCAGTTCCGGTTTAAGAAATACGCATTCAACCCACGCACAGAATACTAAATaGTCTCAGCAGAGTTTCCAG +
Preference number: 2 (lower is better)
Translates to: EKYSVQISSGLRNTHSTHAQNTK*SQQSFQ
Trigger: CTGGAAACTCTGCTGAGAGCATTTAGTATTCTGTGC...GTGGGTTGAATGCGTATTTCTTAAACCGGAACTGATCTGCACACTGTATTTCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020085.7
3UTR GCA 72 bp TTGCTTTCTCAGTCACGTCACAGATCTTGCTGGAGATaGAGGGGGTCCAAGTGTCTCGGAAACCGAAAGAAA +
Preference number: 3 (lower is better)
Translates to: LLSQSRHRSCWR*RGSKCLGNRKK
Trigger: TTTCTTTCGGTTTCCGAGACACTTGGACCCCCTGCATCTCCAGCAAGATCTGTGACGTGACTGAGAAAGCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020085.7
3UTR-3UTR CAA 90 bp GAAAAGCGTCTGGTTGCTTTCTCAGTCACGTCACAGATCTTGCTGGAGATGCAGGTTTCCAGGGTATTCTaGGAAGTTTGTTTTGTCTTG +
Preference number: 3 (lower is better)
Translates to: EKRLVAFSVTSQILLEMQVSRVF*EVCFVL
Trigger: CAAGACAAAACAAACTTCCAAGAATACCCTGGAAAC...CTGCATCTCCAGCAAGATCTGTGACGTGACTGAGAAAGCAACCAGACGCTTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020085.7
3UTR GCA 72 bp AAAACGTCTCGTTTCAGAGAAAGAAAAGCGTCTGGTTaGTTTCTCAGTCACGTCACAGATCTTGCTGGAGAT +
Preference number: 3 (lower is better)
Translates to: KTSRFRERKASG*FLSHVTDLAGD
Trigger: ATCTCCAGCAAGATCTGTGACGTGACTGAGAAAGCAACCAGACGCTTTTCTTTCTCTGAAACGAGACGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020085.7
3UTR TCA 72 bp AAGTGTCTCGGAAACCGAAAGAAAGGTCCTCTTCAATaGGCACAGAATACTAAATGCTCTCAGCAGAGTTTC +
Preference number: 3 (lower is better)
Translates to: KCLGNRKKGPLQ*AQNTKCSQQSF
Trigger: GAAACTCTGCTGAGAGCATTTAGTATTCTGTGCTCATTGAAGAGGACCTTTCTTTCGGTTTCCGAGACACTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020085.7
CDS-3UTR TCA 90 bp AGAAAAGCGTCTGGTTGCTTTCTCAGTCACGTCACAGATCTTGCTGGAGATGCATCCCACGGGTCCCGCTaGGCAGTGGGCAGGTGGATC +
Preference number: 4 (lower is better)
Translates to: RKASGCFLSHVTDLAGDASHGSR*AVGRWI
Trigger: GATCCACCTGCCCACTGCTCAGCGGGACCCGTGGGA...TGCATCTCCAGCAAGATCTGTGACGTGACTGAGAAAGCAACCAGACGCTTTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020085.7
3UTR CAA 72 bp AAGCGTCTGGTTGCTTTCTCAGTCACGTCACAGATCTaGCTGGAGATGCAGGGGGTCCAAGTGTCTCGGAAA +
Preference number: 4 (lower is better)
Translates to: KRLVAFSVTSQI*LEMQGVQVSRK
Trigger: TTTCCGAGACACTTGGACCCCCTGCATCTCCAGCAAGATCTGTGACGTGACTGAGAAAGCAACCAGACGCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020085.7
CDS-3UTR TCA 90 bp TCTTGCTGGAGATGCAGGGGGTCCAAGTGTCTCGGAAACCGAAAGAAAGGTCCTTCGGAAAGTGGACAGTaGGGAAGAAGACTCCACCTT +
Preference number: 4 (lower is better)
Translates to: SCWRCRGSKCLGNRKKGPSESGQ*GRRLHL
Trigger: AAGGTGGAGTCTTCTTCCTCACTGTCCACTTTCCGA...AGGACCTTTCTTTCGGTTTCCGAGACACTTGGACCCCCTGCATCTCCAGCAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020085.7
CDS-3UTR GCA 90 bp AGAAAAGCGTCTGGTTGCTTTCTCAGTCACGTCACAGATCTTGCTGGAGATGCAGACAAATACTCCCGTTaGTGTTTATATTTGGGTGGT +
Preference number: 4 (lower is better)
Translates to: RKASGCFLSHVTDLAGDADKYSR*CLYLGG
Trigger: ACCACCCAAATATAAACAGCAACGGGAGTATTTGTC...TGCATCTCCAGCAAGATCTGTGACGTGACTGAGAAAGCAACCAGACGCTTTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020085.7
3UTR CAA 72 bp AAAAACGTCTCGTTTCAGAGAAAGAAAAGCGTCTGGTaGCTTTCTCAGTCACGTCACAGATCTTGCTGGAGA +
Preference number: 4 (lower is better)
Translates to: KNVSFQRKKSVW*LSQSRHRSCWR
Trigger: TCTCCAGCAAGATCTGTGACGTGACTGAGAAAGCAACCAGACGCTTTTCTTTCTCTGAAACGAGACGTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020085.7
CDS-3UTR TCA 90 bp AGAAAAGCGTCTGGTTGCTTTCTCAGTCACGTCACAGATCTTGCTGGAGATGCAGGTAGATTTTTGTTGTaGAAGCAATCTTTGGTGGTT +
Preference number: 4 (lower is better)
Translates to: RKASGCFLSHVTDLAGDAGRFLL*KQSLVV
Trigger: AACCACCAAAGATTGCTTTCACAACAAAAATCTACC...TGCATCTCCAGCAAGATCTGTGACGTGACTGAGAAAGCAACCAGACGCTTTTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020085.7
CDS-3UTR GCA 90 bp ACGTCTCGTTTCAGAGAAAGAAAAGCGTCTGGTTGCTTTCTCAGTCACGTCACAGTCCATTCTCTTGCGTaGCTGTTGTATTTTTCTTTG +
Preference number: 4 (lower is better)
Translates to: TSRFRERKASGCFLSHVTVHSLA*LLYFSL
Trigger: CAAAGAAAAATACAACAGGCACGCAAGAGAATGGAC...TGTGACGTGACTGAGAAAGCAACCAGACGCTTTTCTTTCTCTGAAACGAGACGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020085.7
CDS-3UTR GCA 90 bp GAGAAATACAGTGTGCAGATCAGTTCCGGTTTAAGAAATACGCATTCAACCCACCTGAGTCCATTCTCTTaGGTGCCTGTTGTATTTTTC +
Preference number: 4 (lower is better)
Translates to: EKYSVQISSGLRNTHSTHLSPFS*VPVVFF
Trigger: GAAAAATACAACAGGCACGCAAGAGAATGGACTCAG...GTGGGTTGAATGCGTATTTCTTAAACCGGAACTGATCTGCACACTGTATTTCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020085.7
CDS-3UTR CCA 90 bp ACGTCTCGTTTCAGAGAAAGAAAAGCGTCTGGTTGCTTTCTCAGTCACGTCACAGAAAGCAATCTTTGGTaGTTTAAAGGGATAGTCTGT +
Preference number: 4 (lower is better)
Translates to: TSRFRERKASGCFLSHVTESNLW*FKGIVC
Trigger: ACAGACTATCCCTTTAAACCACCAAAGATTGCTTTC...TGTGACGTGACTGAGAAAGCAACCAGACGCTTTTCTTTCTCTGAAACGAGACGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020085.7
CDS-3UTR TCA 90 bp AGTGTCTCGGAAACCGAAAGAAAGGTCCTCTTCAATGAGCACAGAATACTAAATTACATTGCATATTTCTaGGTCCATTCTCTTGCGTGC +
Preference number: 4 (lower is better)
Translates to: SVSETERKVLFNEHRILNYIAYF*VHSLAC
Trigger: GCACGCAAGAGAATGGACTCAGAAATATGCAATGTA...ATTTAGTATTCTGTGCTCATTGAAGAGGACCTTTCTTTCGGTTTCCGAGACACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020085.7
CDS-3UTR CAA 90 bp ACGTCTCGTTTCAGAGAAAGAAAAGCGTCTGGTTGCTTTCTCAGTCACGTCACAGAAGAAGACTCCACCTaGATAGGCGCTGTCAGGGGG +
Preference number: 5 (lower is better)
Translates to: TSRFRERKASGCFLSHVTEEDST*IGAVRG
Trigger: CCCCCTGACAGCGCCTATCAAGGTGGAGTCTTCTTC...TGTGACGTGACTGAGAAAGCAACCAGACGCTTTTCTTTCTCTGAAACGAGACGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020085.7
CDS-3UTR CAA 90 bp TCTTGCTGGAGATGCAGGGGGTCCAAGTGTCTCGGAAACCGAAAGAAAGGTCCTTCTCTTGCGTGCCTGTaGTATTTTTCTTTGTCTGAT +
Preference number: 5 (lower is better)
Translates to: SCWRCRGSKCLGNRKKGPSLACL*YFSLSD
Trigger: ATCAGACAAAGAAAAATACAACAGGCACGCAAGAGA...AGGACCTTTCTTTCGGTTTCCGAGACACTTGGACCCCCTGCATCTCCAGCAAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000020085.7
CDS-3UTR CAA 90 bp AGAAAAGCGTCTGGTTGCTTTCTCAGTCACGTCACAGATCTTGCTGGAGATGCAAGACAAATACTCCCGTaGCTGTTTATATTTGGGTGG +
Preference number: 5 (lower is better)
Translates to: RKASGCFLSHVTDLAGDARQILP*LFIFGW
Trigger: CCACCCAAATATAAACAGCAACGGGAGTATTTGTCT...TGCATCTCCAGCAAGATCTGTGACGTGACTGAGAAAGCAACCAGACGCTTTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020085.7
CDS-3UTR CAA 90 bp AGAAAAGCGTCTGGTTGCTTTCTCAGTCACGTCACAGATCTTGCTGGAGATGCATCTGAGTCCATTCTCTaGCGTGCCTGTTGTATTTTT +
Preference number: 5 (lower is better)
Translates to: RKASGCFLSHVTDLAGDASESIL*RACCIF
Trigger: AAAAATACAACAGGCACGCAAGAGAATGGACTCAGA...TGCATCTCCAGCAAGATCTGTGACGTGACTGAGAAAGCAACCAGACGCTTTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020085.7
CDS-3UTR CAA 90 bp CCCAAACAAGTGTTTCTCCATTCTAATCAGTATACTGAGAAATACAGTGTGCAGCGTTGCTGTTTATATTaGGGTGGTAGATTTTTGTTG +
Preference number: 5 (lower is better)
Translates to: PKQVFLHSNQYTEKYSVQRCCLY*GGRFLL
Trigger: CAACAAAAATCTACCACCCAAATATAAACAGCAACG...CTGCACACTGTATTTCTCAGTATACTGATTAGAATGGAGAAACACTTGTTTGGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020085.7
CDS CCA 72 bp TGGAACAAGTCATCTCCCACGGGTCCCGCTGAGCAGTaGGCAGGTGGATCACGCTGTAAATCACTTAATTCT +
Preference number: 6 (lower is better)
Translates to: WNKSSPTGPAEQ*AGGSRCKSLNS
Trigger: AGAATTAAGTGATTTACAGCGTGATCCACCTGCCCACTGCTCAGCGGGACCCGTGGGAGATGACTTGTTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020085.7